Multiple sequence alignment - TraesCS4B01G191100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G191100 chr4B 100.000 3840 0 0 1 3840 413498936 413495097 0.000000e+00 7092.0
1 TraesCS4B01G191100 chr4B 99.275 276 2 0 2359 2634 413496442 413496167 2.060000e-137 499.0
2 TraesCS4B01G191100 chr4B 99.275 276 2 0 2495 2770 413496578 413496303 2.060000e-137 499.0
3 TraesCS4B01G191100 chr4B 98.571 140 2 0 2359 2498 413496306 413496167 8.240000e-62 248.0
4 TraesCS4B01G191100 chr4B 98.571 140 2 0 2631 2770 413496578 413496439 8.240000e-62 248.0
5 TraesCS4B01G191100 chr4D 90.158 1646 81 31 554 2151 335347531 335345919 0.000000e+00 2067.0
6 TraesCS4B01G191100 chr4D 89.911 1239 69 18 2631 3840 335345609 335344398 0.000000e+00 1544.0
7 TraesCS4B01G191100 chr4D 95.977 348 14 0 2151 2498 335345817 335345470 2.000000e-157 566.0
8 TraesCS4B01G191100 chr4D 93.333 210 9 2 1 210 335347962 335347758 4.820000e-79 305.0
9 TraesCS4B01G191100 chr4D 95.714 140 6 0 2495 2634 335345609 335345470 3.860000e-55 226.0
10 TraesCS4B01G191100 chr4D 91.667 108 4 4 290 393 323354210 323354316 1.110000e-30 145.0
11 TraesCS4B01G191100 chr4A 87.662 1775 115 49 206 1932 137526844 137528562 0.000000e+00 1969.0
12 TraesCS4B01G191100 chr4A 91.761 1238 68 16 2631 3840 137529547 137530778 0.000000e+00 1690.0
13 TraesCS4B01G191100 chr4A 96.165 339 13 0 2151 2489 137529339 137529677 4.330000e-154 555.0
14 TraesCS4B01G191100 chr4A 93.956 182 7 4 1 182 137525349 137525526 4.890000e-69 272.0
15 TraesCS4B01G191100 chr4A 96.947 131 4 0 2495 2625 137529547 137529677 1.800000e-53 220.0
16 TraesCS4B01G191100 chr4A 88.235 68 0 2 1952 2013 137528629 137528694 1.480000e-09 75.0
17 TraesCS4B01G191100 chr6A 84.364 1164 111 32 2713 3840 81115625 81116753 0.000000e+00 1075.0
18 TraesCS4B01G191100 chr6A 94.792 96 3 1 290 385 18650291 18650198 8.600000e-32 148.0
19 TraesCS4B01G191100 chr6D 83.613 1190 120 35 2677 3840 63765155 63766295 0.000000e+00 1048.0
20 TraesCS4B01G191100 chr6D 93.069 101 3 3 292 392 345289594 345289690 1.110000e-30 145.0
21 TraesCS4B01G191100 chr6B 84.081 691 62 25 2713 3387 137455438 137456096 1.170000e-174 623.0
22 TraesCS4B01G191100 chr6B 90.541 222 17 2 3619 3840 137456626 137456843 1.350000e-74 291.0
23 TraesCS4B01G191100 chr6B 94.792 96 3 2 291 385 32295745 32295651 8.600000e-32 148.0
24 TraesCS4B01G191100 chr6B 93.939 99 4 1 287 385 566524622 566524718 8.600000e-32 148.0
25 TraesCS4B01G191100 chr6B 93.939 99 1 3 287 385 521042281 521042374 1.110000e-30 145.0
26 TraesCS4B01G191100 chr6B 87.671 73 3 3 3539 3611 137456343 137456409 3.180000e-11 80.5
27 TraesCS4B01G191100 chr1D 94.615 130 7 0 2151 2280 247001895 247002024 6.500000e-48 202.0
28 TraesCS4B01G191100 chr1D 94.521 73 3 1 2019 2090 26156862 26156934 1.130000e-20 111.0
29 TraesCS4B01G191100 chr1A 94.792 96 4 1 290 384 11665683 11665588 8.600000e-32 148.0
30 TraesCS4B01G191100 chr3B 90.909 110 6 3 287 393 16445217 16445109 1.110000e-30 145.0
31 TraesCS4B01G191100 chr3B 94.521 73 3 1 2019 2090 354410861 354410933 1.130000e-20 111.0
32 TraesCS4B01G191100 chr7D 88.525 122 7 7 270 390 171421344 171421229 1.440000e-29 141.0
33 TraesCS4B01G191100 chr2D 96.000 75 2 1 2017 2090 267220732 267220806 1.870000e-23 121.0
34 TraesCS4B01G191100 chr1B 94.595 74 3 1 2019 2091 391043541 391043614 3.140000e-21 113.0
35 TraesCS4B01G191100 chr2B 94.521 73 3 1 2019 2090 26705147 26705075 1.130000e-20 111.0
36 TraesCS4B01G191100 chr2B 94.521 73 3 1 2019 2090 26725791 26725719 1.130000e-20 111.0
37 TraesCS4B01G191100 chr2B 93.333 75 3 2 2019 2091 302616544 302616618 4.060000e-20 110.0
38 TraesCS4B01G191100 chr3D 94.444 72 2 2 2020 2090 516077577 516077507 4.060000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G191100 chr4B 413495097 413498936 3839 True 1717.200000 7092 99.138400 1 3840 5 chr4B.!!$R1 3839
1 TraesCS4B01G191100 chr4D 335344398 335347962 3564 True 941.600000 2067 93.018600 1 3840 5 chr4D.!!$R1 3839
2 TraesCS4B01G191100 chr4A 137525349 137530778 5429 False 796.833333 1969 92.454333 1 3840 6 chr4A.!!$F1 3839
3 TraesCS4B01G191100 chr6A 81115625 81116753 1128 False 1075.000000 1075 84.364000 2713 3840 1 chr6A.!!$F1 1127
4 TraesCS4B01G191100 chr6D 63765155 63766295 1140 False 1048.000000 1048 83.613000 2677 3840 1 chr6D.!!$F1 1163
5 TraesCS4B01G191100 chr6B 137455438 137456843 1405 False 331.500000 623 87.431000 2713 3840 3 chr6B.!!$F3 1127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 1743 0.026803 CTTCCAACGCTAAGCATCGC 59.973 55.0 0.00 0.00 0.00 4.58 F
983 2314 0.321919 CCTTTCCTGCAGCAGTAGCA 60.322 55.0 21.26 1.42 45.49 3.49 F
2497 4844 0.463204 AGCTACTCAGTGCGATGCAT 59.537 50.0 0.00 0.00 41.91 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 3124 0.386478 GCAGCGAGGCAAAAGAACAG 60.386 55.000 0.00 0.0 0.00 3.16 R
2614 4961 0.463204 ATGCATCGCACTGAGTAGCT 59.537 50.000 0.00 0.0 43.04 3.32 R
3406 5810 1.738099 GTAGTCAGTGTGCCAGGCG 60.738 63.158 7.03 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 2.430465 GCACATGTGATCCTTGACAGT 58.570 47.619 29.80 0.00 0.00 3.55
144 145 8.362639 ACAGTTTGTAGTATTACGAGGAGAAAA 58.637 33.333 0.00 0.00 32.21 2.29
145 146 9.367444 CAGTTTGTAGTATTACGAGGAGAAAAT 57.633 33.333 0.00 0.00 32.21 1.82
146 147 9.367444 AGTTTGTAGTATTACGAGGAGAAAATG 57.633 33.333 0.00 0.00 32.21 2.32
147 148 7.766219 TTGTAGTATTACGAGGAGAAAATGC 57.234 36.000 0.00 0.00 32.21 3.56
180 213 0.655733 CAGCGTCTCGTGTTGGTTTT 59.344 50.000 0.00 0.00 0.00 2.43
192 1369 5.054477 CGTGTTGGTTTTAGAGAAGAAGGA 58.946 41.667 0.00 0.00 0.00 3.36
233 1531 0.991920 ATTCGGGCAGAGAGGGAAAA 59.008 50.000 0.00 0.00 0.00 2.29
253 1551 1.826385 AAACGAAGCTCAATCCAGGG 58.174 50.000 0.00 0.00 0.00 4.45
257 1555 2.224769 ACGAAGCTCAATCCAGGGAAAA 60.225 45.455 0.00 0.00 0.00 2.29
258 1556 2.421424 CGAAGCTCAATCCAGGGAAAAG 59.579 50.000 0.00 0.00 0.00 2.27
271 1569 6.476378 TCCAGGGAAAAGAAACAGATAGAAG 58.524 40.000 0.00 0.00 0.00 2.85
340 1638 0.107654 GGTTTCGATCCTGGGACCTG 60.108 60.000 0.00 0.00 0.00 4.00
385 1683 0.242017 GCTGCGCCACTCTGATTTTT 59.758 50.000 4.18 0.00 0.00 1.94
390 1688 2.918131 GCGCCACTCTGATTTTTGTGTC 60.918 50.000 0.00 0.00 0.00 3.67
391 1689 2.549754 CGCCACTCTGATTTTTGTGTCT 59.450 45.455 0.00 0.00 0.00 3.41
395 1693 5.679906 CCACTCTGATTTTTGTGTCTAACG 58.320 41.667 0.00 0.00 0.00 3.18
398 1696 7.359264 CCACTCTGATTTTTGTGTCTAACGTAG 60.359 40.741 0.00 0.00 0.00 3.51
399 1697 7.381408 CACTCTGATTTTTGTGTCTAACGTAGA 59.619 37.037 0.00 0.00 0.00 2.59
420 1718 4.323553 ACCCGTACGGTACTAGTAGTAG 57.676 50.000 31.24 14.45 45.97 2.57
421 1719 3.705072 ACCCGTACGGTACTAGTAGTAGT 59.295 47.826 31.24 15.09 45.97 2.73
422 1720 4.161754 ACCCGTACGGTACTAGTAGTAGTT 59.838 45.833 31.24 0.57 45.97 2.24
423 1721 5.116882 CCCGTACGGTACTAGTAGTAGTTT 58.883 45.833 31.24 0.74 40.23 2.66
424 1722 5.234543 CCCGTACGGTACTAGTAGTAGTTTC 59.765 48.000 31.24 9.19 40.23 2.78
425 1723 6.043411 CCGTACGGTACTAGTAGTAGTTTCT 58.957 44.000 26.39 0.02 40.23 2.52
437 1735 5.709164 AGTAGTAGTTTCTCTTCCAACGCTA 59.291 40.000 0.00 0.00 0.00 4.26
442 1740 3.334583 TTCTCTTCCAACGCTAAGCAT 57.665 42.857 0.00 0.00 0.00 3.79
445 1743 0.026803 CTTCCAACGCTAAGCATCGC 59.973 55.000 0.00 0.00 0.00 4.58
446 1744 0.672091 TTCCAACGCTAAGCATCGCA 60.672 50.000 0.00 0.00 0.00 5.10
448 1746 0.521242 CCAACGCTAAGCATCGCAAC 60.521 55.000 0.00 0.00 0.00 4.17
449 1747 0.521242 CAACGCTAAGCATCGCAACC 60.521 55.000 0.00 0.00 0.00 3.77
450 1748 0.953471 AACGCTAAGCATCGCAACCA 60.953 50.000 0.00 0.00 0.00 3.67
451 1749 0.953471 ACGCTAAGCATCGCAACCAA 60.953 50.000 0.00 0.00 0.00 3.67
455 1753 2.627945 CTAAGCATCGCAACCAACCTA 58.372 47.619 0.00 0.00 0.00 3.08
457 1755 1.668419 AGCATCGCAACCAACCTATC 58.332 50.000 0.00 0.00 0.00 2.08
459 1757 1.331756 GCATCGCAACCAACCTATCAG 59.668 52.381 0.00 0.00 0.00 2.90
462 1760 0.392998 CGCAACCAACCTATCAGGCT 60.393 55.000 0.00 0.00 39.63 4.58
463 1761 1.839424 GCAACCAACCTATCAGGCTT 58.161 50.000 0.00 0.00 39.63 4.35
467 1765 1.985159 ACCAACCTATCAGGCTTCACA 59.015 47.619 0.00 0.00 39.63 3.58
470 1768 3.005554 CAACCTATCAGGCTTCACACTG 58.994 50.000 0.00 0.00 39.63 3.66
482 1784 1.665916 CACACTGTACGCTGCAGCT 60.666 57.895 34.22 23.29 39.32 4.24
489 1791 1.136872 GTACGCTGCAGCTTCTCTCG 61.137 60.000 34.22 19.98 39.32 4.04
498 1800 2.797792 GCAGCTTCTCTCGTGTGGATAG 60.798 54.545 0.00 0.00 0.00 2.08
513 1815 1.202855 GGATAGACATGGCACCAGCAT 60.203 52.381 0.00 0.00 44.61 3.79
521 1823 2.472909 GGCACCAGCATTACGAGCC 61.473 63.158 0.00 0.00 44.61 4.70
536 1838 2.827642 GCCTCAGATGCAGCACCC 60.828 66.667 4.07 0.00 0.00 4.61
537 1839 2.124403 CCTCAGATGCAGCACCCC 60.124 66.667 4.07 0.00 0.00 4.95
538 1840 2.124403 CTCAGATGCAGCACCCCC 60.124 66.667 4.07 0.00 0.00 5.40
539 1841 2.934932 TCAGATGCAGCACCCCCA 60.935 61.111 4.07 0.00 0.00 4.96
540 1842 2.753043 CAGATGCAGCACCCCCAC 60.753 66.667 4.07 0.00 0.00 4.61
541 1843 4.052518 AGATGCAGCACCCCCACC 62.053 66.667 4.07 0.00 0.00 4.61
638 1944 5.989777 CCCATGGAGTAAAGTATAGTTTCGG 59.010 44.000 15.22 1.29 0.00 4.30
644 1950 5.338365 AGTAAAGTATAGTTTCGGCACTCG 58.662 41.667 8.84 0.00 40.90 4.18
684 1999 2.185310 GACAACCCCTGCGATCCACT 62.185 60.000 0.00 0.00 0.00 4.00
775 2090 0.647925 GCGGAAAAACAAAAGCGCAA 59.352 45.000 11.47 0.00 0.00 4.85
776 2091 1.260297 GCGGAAAAACAAAAGCGCAAT 59.740 42.857 11.47 0.00 0.00 3.56
946 2268 0.394565 GCACGGCTCCTGGAAGATAT 59.605 55.000 0.00 0.00 34.07 1.63
983 2314 0.321919 CCTTTCCTGCAGCAGTAGCA 60.322 55.000 21.26 1.42 45.49 3.49
987 2318 2.385875 CCTGCAGCAGTAGCACACG 61.386 63.158 21.26 0.00 45.49 4.49
1062 2420 4.082523 CAGGGGAAGAAGCGCGGA 62.083 66.667 8.83 0.00 0.00 5.54
1198 2556 2.581409 CGGGTGCTACTAACGGCG 60.581 66.667 4.80 4.80 0.00 6.46
1199 2557 2.202837 GGGTGCTACTAACGGCGG 60.203 66.667 13.24 0.00 0.00 6.13
1200 2558 2.889018 GGTGCTACTAACGGCGGC 60.889 66.667 13.24 3.92 0.00 6.53
1201 2559 3.252484 GTGCTACTAACGGCGGCG 61.252 66.667 31.06 31.06 0.00 6.46
1202 2560 4.501714 TGCTACTAACGGCGGCGG 62.502 66.667 35.05 19.88 0.00 6.13
1369 2727 1.873591 CTGGTAAGTCACTGCGCTTTT 59.126 47.619 9.73 0.00 0.00 2.27
1370 2728 3.064207 CTGGTAAGTCACTGCGCTTTTA 58.936 45.455 9.73 0.00 0.00 1.52
1371 2729 2.803956 TGGTAAGTCACTGCGCTTTTAC 59.196 45.455 9.73 8.11 0.00 2.01
1376 2734 4.992381 AGTCACTGCGCTTTTACTTTAG 57.008 40.909 9.73 0.00 0.00 1.85
1443 2806 1.360852 AGCAGAGGAAGAGAGAAGGGA 59.639 52.381 0.00 0.00 0.00 4.20
1570 2933 4.636206 GGGGAAGATGTTGATCACAGTAAC 59.364 45.833 0.00 0.00 39.40 2.50
1584 2947 3.072468 TAACGGTGAGGGCGAGGG 61.072 66.667 0.00 0.00 0.00 4.30
1688 3051 2.570181 GTGCACTGCCAATCTGCC 59.430 61.111 10.32 0.00 0.00 4.85
1715 3078 1.559682 AGTTCCGCCATATCCTTGTGT 59.440 47.619 0.00 0.00 0.00 3.72
1749 3112 2.294233 TGTTTCAGCTGACAGGATTTGC 59.706 45.455 18.03 0.00 0.00 3.68
1753 3116 2.008329 CAGCTGACAGGATTTGCTCTC 58.992 52.381 8.42 0.00 0.00 3.20
1754 3117 1.907936 AGCTGACAGGATTTGCTCTCT 59.092 47.619 4.26 0.00 0.00 3.10
1755 3118 2.093553 AGCTGACAGGATTTGCTCTCTC 60.094 50.000 4.26 0.00 0.00 3.20
1756 3119 2.093553 GCTGACAGGATTTGCTCTCTCT 60.094 50.000 4.26 0.00 0.00 3.10
1757 3120 3.784338 CTGACAGGATTTGCTCTCTCTC 58.216 50.000 0.00 0.00 0.00 3.20
1759 3122 1.836802 ACAGGATTTGCTCTCTCTCCC 59.163 52.381 0.00 0.00 0.00 4.30
1761 3124 2.102925 CAGGATTTGCTCTCTCTCCCTC 59.897 54.545 0.00 0.00 0.00 4.30
1763 3126 2.102925 GGATTTGCTCTCTCTCCCTCTG 59.897 54.545 0.00 0.00 0.00 3.35
1764 3127 2.317371 TTTGCTCTCTCTCCCTCTGT 57.683 50.000 0.00 0.00 0.00 3.41
1765 3128 2.317371 TTGCTCTCTCTCCCTCTGTT 57.683 50.000 0.00 0.00 0.00 3.16
1766 3129 1.846007 TGCTCTCTCTCCCTCTGTTC 58.154 55.000 0.00 0.00 0.00 3.18
1776 3139 1.160137 CCCTCTGTTCTTTTGCCTCG 58.840 55.000 0.00 0.00 0.00 4.63
1850 3213 1.937278 TCGACGACTAGACTAGCAGG 58.063 55.000 9.52 1.89 0.00 4.85
1921 3284 1.742268 GTGCCCTCTTTCTTGATGCTC 59.258 52.381 0.00 0.00 0.00 4.26
2006 3429 4.523558 ACTGGTCCTCCTCGCTTATTATAC 59.476 45.833 0.00 0.00 34.23 1.47
2011 3434 4.833380 TCCTCCTCGCTTATTATACTTGCT 59.167 41.667 0.00 0.00 0.00 3.91
2012 3435 6.008331 TCCTCCTCGCTTATTATACTTGCTA 58.992 40.000 0.00 0.00 0.00 3.49
2013 3436 6.151312 TCCTCCTCGCTTATTATACTTGCTAG 59.849 42.308 0.00 0.00 0.00 3.42
2025 3448 7.584122 TTATACTTGCTAGTACTCCTTGGAG 57.416 40.000 14.58 14.58 39.59 3.86
2026 3449 3.780626 ACTTGCTAGTACTCCTTGGAGT 58.219 45.455 23.63 23.63 39.08 3.85
2059 3482 6.262273 TGTGGTGGAAAGAAGTGAAATAAGAC 59.738 38.462 0.00 0.00 0.00 3.01
2091 3514 6.790232 TGGAAAAACCAAGAAAATGAGACT 57.210 33.333 0.00 0.00 46.75 3.24
2153 4228 3.688185 GCCTACTAAACCGGAAAGGAAAG 59.312 47.826 9.46 0.00 45.00 2.62
2228 4303 5.545658 ACAAGACACATATGTTAAAGCGG 57.454 39.130 5.37 0.00 39.95 5.52
2248 4323 3.308323 CGGCTTCTCTGAAGCAAAGATAC 59.692 47.826 26.64 11.59 44.71 2.24
2294 4369 5.334802 CGGCACAGATGAAAACAGATGTTTA 60.335 40.000 11.13 0.00 46.47 2.01
2333 4408 3.199071 ACATATTTCCCTTACCGCAGTGA 59.801 43.478 0.00 0.00 0.00 3.41
2378 4453 2.613474 GGCATTTGGCAGAGCAAAATCA 60.613 45.455 1.50 0.00 39.82 2.57
2453 4528 2.494471 CCACATGCCATGACATCAAACT 59.506 45.455 12.53 0.00 0.00 2.66
2495 4842 2.430546 ATAGCTACTCAGTGCGATGC 57.569 50.000 0.00 0.00 0.00 3.91
2497 4844 0.463204 AGCTACTCAGTGCGATGCAT 59.537 50.000 0.00 0.00 41.91 3.96
2498 4845 1.134580 AGCTACTCAGTGCGATGCATT 60.135 47.619 0.00 0.00 41.91 3.56
2499 4846 1.667724 GCTACTCAGTGCGATGCATTT 59.332 47.619 0.00 0.00 41.91 2.32
2500 4847 2.866156 GCTACTCAGTGCGATGCATTTA 59.134 45.455 0.00 0.00 41.91 1.40
2501 4848 3.060003 GCTACTCAGTGCGATGCATTTAG 60.060 47.826 0.00 0.00 41.91 1.85
2502 4849 1.667724 ACTCAGTGCGATGCATTTAGC 59.332 47.619 0.00 8.22 41.91 3.09
2516 4863 5.637104 GCATTTAGCAGAGCAAAATCATG 57.363 39.130 0.00 0.00 44.79 3.07
2517 4864 4.506654 GCATTTAGCAGAGCAAAATCATGG 59.493 41.667 0.00 0.00 44.79 3.66
2518 4865 4.724074 TTTAGCAGAGCAAAATCATGGG 57.276 40.909 0.00 0.00 0.00 4.00
2519 4866 2.519771 AGCAGAGCAAAATCATGGGA 57.480 45.000 0.00 0.00 0.00 4.37
2520 4867 2.376109 AGCAGAGCAAAATCATGGGAG 58.624 47.619 0.00 0.00 0.00 4.30
2521 4868 1.407979 GCAGAGCAAAATCATGGGAGG 59.592 52.381 0.00 0.00 0.00 4.30
2522 4869 2.947243 GCAGAGCAAAATCATGGGAGGA 60.947 50.000 0.00 0.00 0.00 3.71
2523 4870 3.359033 CAGAGCAAAATCATGGGAGGAA 58.641 45.455 0.00 0.00 0.00 3.36
2524 4871 3.380637 CAGAGCAAAATCATGGGAGGAAG 59.619 47.826 0.00 0.00 0.00 3.46
2525 4872 3.267812 AGAGCAAAATCATGGGAGGAAGA 59.732 43.478 0.00 0.00 0.00 2.87
2526 4873 4.019174 GAGCAAAATCATGGGAGGAAGAA 58.981 43.478 0.00 0.00 0.00 2.52
2527 4874 4.419282 AGCAAAATCATGGGAGGAAGAAA 58.581 39.130 0.00 0.00 0.00 2.52
2528 4875 5.028131 AGCAAAATCATGGGAGGAAGAAAT 58.972 37.500 0.00 0.00 0.00 2.17
2529 4876 5.105064 AGCAAAATCATGGGAGGAAGAAATG 60.105 40.000 0.00 0.00 0.00 2.32
2530 4877 5.114081 CAAAATCATGGGAGGAAGAAATGC 58.886 41.667 0.00 0.00 0.00 3.56
2531 4878 3.675348 ATCATGGGAGGAAGAAATGCA 57.325 42.857 0.00 0.00 0.00 3.96
2532 4879 3.008835 TCATGGGAGGAAGAAATGCAG 57.991 47.619 0.00 0.00 0.00 4.41
2533 4880 1.407979 CATGGGAGGAAGAAATGCAGC 59.592 52.381 0.00 0.00 0.00 5.25
2534 4881 0.700564 TGGGAGGAAGAAATGCAGCT 59.299 50.000 0.00 0.00 0.00 4.24
2535 4882 1.915489 TGGGAGGAAGAAATGCAGCTA 59.085 47.619 0.00 0.00 0.00 3.32
2536 4883 2.092753 TGGGAGGAAGAAATGCAGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
2537 4884 1.946081 GGAGGAAGAAATGCAGCTAGC 59.054 52.381 6.62 6.62 45.96 3.42
2538 4885 2.421248 GGAGGAAGAAATGCAGCTAGCT 60.421 50.000 12.68 12.68 45.94 3.32
2539 4886 3.181461 GGAGGAAGAAATGCAGCTAGCTA 60.181 47.826 18.86 2.62 45.94 3.32
2540 4887 3.802866 AGGAAGAAATGCAGCTAGCTAC 58.197 45.455 18.86 13.19 45.94 3.58
2541 4888 2.541762 GGAAGAAATGCAGCTAGCTACG 59.458 50.000 18.86 7.37 45.94 3.51
2542 4889 3.448686 GAAGAAATGCAGCTAGCTACGA 58.551 45.455 18.86 4.32 45.94 3.43
2543 4890 3.090952 AGAAATGCAGCTAGCTACGAG 57.909 47.619 18.86 6.14 45.94 4.18
2544 4891 2.690497 AGAAATGCAGCTAGCTACGAGA 59.310 45.455 18.86 0.00 45.94 4.04
2545 4892 3.320541 AGAAATGCAGCTAGCTACGAGAT 59.679 43.478 18.86 2.18 45.94 2.75
2546 4893 3.742433 AATGCAGCTAGCTACGAGATT 57.258 42.857 18.86 5.06 45.94 2.40
2547 4894 2.498807 TGCAGCTAGCTACGAGATTG 57.501 50.000 18.86 4.31 45.94 2.67
2548 4895 1.135867 GCAGCTAGCTACGAGATTGC 58.864 55.000 18.86 11.31 41.15 3.56
2549 4896 1.536922 GCAGCTAGCTACGAGATTGCA 60.537 52.381 18.86 0.00 34.94 4.08
2550 4897 2.865670 GCAGCTAGCTACGAGATTGCAT 60.866 50.000 18.86 0.00 34.94 3.96
2551 4898 3.612717 GCAGCTAGCTACGAGATTGCATA 60.613 47.826 18.86 0.00 34.94 3.14
2552 4899 4.550422 CAGCTAGCTACGAGATTGCATAA 58.450 43.478 18.86 0.00 34.94 1.90
2553 4900 4.620609 CAGCTAGCTACGAGATTGCATAAG 59.379 45.833 18.86 0.00 34.94 1.73
2554 4901 4.279671 AGCTAGCTACGAGATTGCATAAGT 59.720 41.667 17.69 0.00 34.94 2.24
2555 4902 4.619336 GCTAGCTACGAGATTGCATAAGTC 59.381 45.833 7.70 0.00 32.85 3.01
2556 4903 4.655762 AGCTACGAGATTGCATAAGTCA 57.344 40.909 0.00 0.00 0.00 3.41
2557 4904 5.011090 AGCTACGAGATTGCATAAGTCAA 57.989 39.130 0.00 0.00 0.00 3.18
2558 4905 5.419542 AGCTACGAGATTGCATAAGTCAAA 58.580 37.500 0.00 0.00 0.00 2.69
2559 4906 5.874810 AGCTACGAGATTGCATAAGTCAAAA 59.125 36.000 0.00 0.00 0.00 2.44
2560 4907 6.540189 AGCTACGAGATTGCATAAGTCAAAAT 59.460 34.615 0.00 0.00 0.00 1.82
2561 4908 6.630443 GCTACGAGATTGCATAAGTCAAAATG 59.370 38.462 0.00 0.00 0.00 2.32
2562 4909 5.335127 ACGAGATTGCATAAGTCAAAATGC 58.665 37.500 0.00 0.44 46.92 3.56
2570 4917 6.055231 GCATAAGTCAAAATGCGTATACCA 57.945 37.500 0.00 0.00 39.15 3.25
2571 4918 5.907391 GCATAAGTCAAAATGCGTATACCAC 59.093 40.000 0.00 0.00 39.15 4.16
2572 4919 6.457663 GCATAAGTCAAAATGCGTATACCACA 60.458 38.462 0.00 0.00 39.15 4.17
2573 4920 7.639039 CATAAGTCAAAATGCGTATACCACAT 58.361 34.615 0.00 0.00 0.00 3.21
2574 4921 5.484173 AGTCAAAATGCGTATACCACATG 57.516 39.130 6.77 0.00 0.00 3.21
2575 4922 4.035017 GTCAAAATGCGTATACCACATGC 58.965 43.478 6.77 0.65 0.00 4.06
2576 4923 3.066064 TCAAAATGCGTATACCACATGCC 59.934 43.478 6.77 0.00 0.00 4.40
2577 4924 2.340210 AATGCGTATACCACATGCCA 57.660 45.000 6.77 0.00 0.00 4.92
2578 4925 2.566833 ATGCGTATACCACATGCCAT 57.433 45.000 5.47 0.00 0.00 4.40
2579 4926 1.592064 TGCGTATACCACATGCCATG 58.408 50.000 2.40 2.40 0.00 3.66
2580 4927 1.139853 TGCGTATACCACATGCCATGA 59.860 47.619 12.53 0.00 0.00 3.07
2581 4928 1.531149 GCGTATACCACATGCCATGAC 59.469 52.381 12.53 0.00 0.00 3.06
2582 4929 2.832563 CGTATACCACATGCCATGACA 58.167 47.619 12.53 0.00 0.00 3.58
2583 4930 3.402110 CGTATACCACATGCCATGACAT 58.598 45.455 12.53 0.00 0.00 3.06
2584 4931 3.433274 CGTATACCACATGCCATGACATC 59.567 47.826 12.53 0.00 0.00 3.06
2585 4932 3.581265 ATACCACATGCCATGACATCA 57.419 42.857 12.53 0.00 0.00 3.07
2586 4933 2.219080 ACCACATGCCATGACATCAA 57.781 45.000 12.53 0.00 0.00 2.57
2587 4934 2.527497 ACCACATGCCATGACATCAAA 58.473 42.857 12.53 0.00 0.00 2.69
2588 4935 2.231964 ACCACATGCCATGACATCAAAC 59.768 45.455 12.53 0.00 0.00 2.93
2589 4936 2.494471 CCACATGCCATGACATCAAACT 59.506 45.455 12.53 0.00 0.00 2.66
2590 4937 3.507786 CACATGCCATGACATCAAACTG 58.492 45.455 12.53 0.00 0.00 3.16
2591 4938 2.494471 ACATGCCATGACATCAAACTGG 59.506 45.455 12.53 0.00 0.00 4.00
2592 4939 3.727419 GCCATGACATCAAACTGGC 57.273 52.632 8.77 8.77 44.91 4.85
2593 4940 1.180029 GCCATGACATCAAACTGGCT 58.820 50.000 14.92 0.00 46.97 4.75
2594 4941 2.368439 GCCATGACATCAAACTGGCTA 58.632 47.619 14.92 0.00 46.97 3.93
2595 4942 2.098117 GCCATGACATCAAACTGGCTAC 59.902 50.000 14.92 0.00 46.97 3.58
2596 4943 3.346315 CCATGACATCAAACTGGCTACA 58.654 45.455 0.00 0.00 0.00 2.74
2597 4944 6.215041 GCCATGACATCAAACTGGCTACAG 62.215 50.000 14.92 0.00 46.97 2.74
2609 4956 2.325484 TGGCTACAGACTGGAGAAACA 58.675 47.619 19.49 10.57 26.39 2.83
2610 4957 2.703536 TGGCTACAGACTGGAGAAACAA 59.296 45.455 19.49 0.00 26.39 2.83
2611 4958 3.327757 TGGCTACAGACTGGAGAAACAAT 59.672 43.478 19.49 0.00 26.39 2.71
2612 4959 4.530553 TGGCTACAGACTGGAGAAACAATA 59.469 41.667 19.49 0.00 26.39 1.90
2613 4960 5.189736 TGGCTACAGACTGGAGAAACAATAT 59.810 40.000 19.49 0.00 26.39 1.28
2614 4961 6.382859 TGGCTACAGACTGGAGAAACAATATA 59.617 38.462 19.49 0.00 26.39 0.86
2615 4962 6.926272 GGCTACAGACTGGAGAAACAATATAG 59.074 42.308 19.49 1.79 26.39 1.31
2616 4963 6.422400 GCTACAGACTGGAGAAACAATATAGC 59.578 42.308 19.49 8.04 26.39 2.97
2617 4964 6.552445 ACAGACTGGAGAAACAATATAGCT 57.448 37.500 7.51 0.00 0.00 3.32
2618 4965 7.661536 ACAGACTGGAGAAACAATATAGCTA 57.338 36.000 7.51 0.00 0.00 3.32
2619 4966 7.493367 ACAGACTGGAGAAACAATATAGCTAC 58.507 38.462 7.51 0.00 0.00 3.58
2620 4967 7.343316 ACAGACTGGAGAAACAATATAGCTACT 59.657 37.037 7.51 0.00 0.00 2.57
2621 4968 7.865385 CAGACTGGAGAAACAATATAGCTACTC 59.135 40.741 0.00 0.00 0.00 2.59
2622 4969 7.561722 AGACTGGAGAAACAATATAGCTACTCA 59.438 37.037 0.00 0.00 0.00 3.41
2623 4970 7.721402 ACTGGAGAAACAATATAGCTACTCAG 58.279 38.462 0.00 0.00 0.00 3.35
2624 4971 7.343316 ACTGGAGAAACAATATAGCTACTCAGT 59.657 37.037 0.00 0.36 0.00 3.41
2625 4972 7.492524 TGGAGAAACAATATAGCTACTCAGTG 58.507 38.462 0.00 0.00 0.00 3.66
2626 4973 6.422400 GGAGAAACAATATAGCTACTCAGTGC 59.578 42.308 0.00 0.00 0.00 4.40
2627 4974 5.980116 AGAAACAATATAGCTACTCAGTGCG 59.020 40.000 0.00 0.00 0.00 5.34
2628 4975 5.515797 AACAATATAGCTACTCAGTGCGA 57.484 39.130 0.00 0.00 0.00 5.10
2629 4976 5.713792 ACAATATAGCTACTCAGTGCGAT 57.286 39.130 0.00 0.00 0.00 4.58
2630 4977 5.465051 ACAATATAGCTACTCAGTGCGATG 58.535 41.667 0.00 0.00 0.00 3.84
2631 4978 2.430546 ATAGCTACTCAGTGCGATGC 57.569 50.000 0.00 0.00 0.00 3.91
2632 4979 1.102978 TAGCTACTCAGTGCGATGCA 58.897 50.000 0.00 0.00 35.60 3.96
2633 4980 0.463204 AGCTACTCAGTGCGATGCAT 59.537 50.000 0.00 0.00 41.91 3.96
2634 4981 1.134580 AGCTACTCAGTGCGATGCATT 60.135 47.619 0.00 0.00 41.91 3.56
2635 4982 1.667724 GCTACTCAGTGCGATGCATTT 59.332 47.619 0.00 0.00 41.91 2.32
2636 4983 2.866156 GCTACTCAGTGCGATGCATTTA 59.134 45.455 0.00 0.00 41.91 1.40
2637 4984 3.060003 GCTACTCAGTGCGATGCATTTAG 60.060 47.826 0.00 0.00 41.91 1.85
2638 4985 1.667724 ACTCAGTGCGATGCATTTAGC 59.332 47.619 0.00 8.22 41.91 3.09
2652 4999 5.637104 GCATTTAGCAGAGCAAAATCATG 57.363 39.130 0.00 0.00 44.79 3.07
2653 5000 4.506654 GCATTTAGCAGAGCAAAATCATGG 59.493 41.667 0.00 0.00 44.79 3.66
2654 5001 4.724074 TTTAGCAGAGCAAAATCATGGG 57.276 40.909 0.00 0.00 0.00 4.00
2655 5002 2.519771 AGCAGAGCAAAATCATGGGA 57.480 45.000 0.00 0.00 0.00 4.37
2656 5003 2.376109 AGCAGAGCAAAATCATGGGAG 58.624 47.619 0.00 0.00 0.00 4.30
2657 5004 1.407979 GCAGAGCAAAATCATGGGAGG 59.592 52.381 0.00 0.00 0.00 4.30
2658 5005 2.947243 GCAGAGCAAAATCATGGGAGGA 60.947 50.000 0.00 0.00 0.00 3.71
2659 5006 3.359033 CAGAGCAAAATCATGGGAGGAA 58.641 45.455 0.00 0.00 0.00 3.36
2660 5007 3.380637 CAGAGCAAAATCATGGGAGGAAG 59.619 47.826 0.00 0.00 0.00 3.46
2661 5008 3.267812 AGAGCAAAATCATGGGAGGAAGA 59.732 43.478 0.00 0.00 0.00 2.87
2662 5009 4.019174 GAGCAAAATCATGGGAGGAAGAA 58.981 43.478 0.00 0.00 0.00 2.52
2663 5010 4.419282 AGCAAAATCATGGGAGGAAGAAA 58.581 39.130 0.00 0.00 0.00 2.52
2664 5011 5.028131 AGCAAAATCATGGGAGGAAGAAAT 58.972 37.500 0.00 0.00 0.00 2.17
2665 5012 5.105064 AGCAAAATCATGGGAGGAAGAAATG 60.105 40.000 0.00 0.00 0.00 2.32
2666 5013 5.114081 CAAAATCATGGGAGGAAGAAATGC 58.886 41.667 0.00 0.00 0.00 3.56
2667 5014 3.675348 ATCATGGGAGGAAGAAATGCA 57.325 42.857 0.00 0.00 0.00 3.96
2668 5015 3.008835 TCATGGGAGGAAGAAATGCAG 57.991 47.619 0.00 0.00 0.00 4.41
2669 5016 1.407979 CATGGGAGGAAGAAATGCAGC 59.592 52.381 0.00 0.00 0.00 5.25
2670 5017 0.700564 TGGGAGGAAGAAATGCAGCT 59.299 50.000 0.00 0.00 0.00 4.24
2671 5018 1.915489 TGGGAGGAAGAAATGCAGCTA 59.085 47.619 0.00 0.00 0.00 3.32
2672 5019 2.092753 TGGGAGGAAGAAATGCAGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
2673 5020 1.946081 GGAGGAAGAAATGCAGCTAGC 59.054 52.381 6.62 6.62 45.96 3.42
2674 5021 2.421248 GGAGGAAGAAATGCAGCTAGCT 60.421 50.000 12.68 12.68 45.94 3.32
2675 5022 3.181461 GGAGGAAGAAATGCAGCTAGCTA 60.181 47.826 18.86 2.62 45.94 3.32
2687 5034 3.612717 GCAGCTAGCTACGAGATTGCATA 60.613 47.826 18.86 0.00 34.94 3.14
2690 5037 4.279671 AGCTAGCTACGAGATTGCATAAGT 59.720 41.667 17.69 0.00 34.94 2.24
2691 5038 4.619336 GCTAGCTACGAGATTGCATAAGTC 59.381 45.833 7.70 0.00 32.85 3.01
2706 5053 6.055231 GCATAAGTCAAAATGCGTATACCA 57.945 37.500 0.00 0.00 39.15 3.25
2708 5055 6.457663 GCATAAGTCAAAATGCGTATACCACA 60.458 38.462 0.00 0.00 39.15 4.17
2709 5056 7.639039 CATAAGTCAAAATGCGTATACCACAT 58.361 34.615 0.00 0.00 0.00 3.21
2710 5057 5.484173 AGTCAAAATGCGTATACCACATG 57.516 39.130 6.77 0.00 0.00 3.21
2711 5058 4.035017 GTCAAAATGCGTATACCACATGC 58.965 43.478 6.77 0.65 0.00 4.06
2716 5072 1.139853 TGCGTATACCACATGCCATGA 59.860 47.619 12.53 0.00 0.00 3.07
2748 5104 4.530553 TGGCTACAGACTGGAGAAACAATA 59.469 41.667 19.49 0.00 26.39 1.90
2763 5119 5.980116 AGAAACAATATAGCTACTCAGTGCG 59.020 40.000 0.00 0.00 0.00 5.34
2797 5179 4.489841 GCGAGACGTAAAATTTAGGTCACG 60.490 45.833 32.63 32.63 43.62 4.35
2938 5322 1.199097 GCAACGTTTCCATCACCGATT 59.801 47.619 0.00 0.00 0.00 3.34
2980 5364 2.370281 TCTCAATCGCCACAGAGAAC 57.630 50.000 0.00 0.00 34.45 3.01
3004 5388 2.265182 AAAACCCACGCACCCGATG 61.265 57.895 0.00 0.00 38.29 3.84
3050 5434 8.088463 TGCAAGGAAAATACCAATTCCATTAT 57.912 30.769 7.25 0.00 46.14 1.28
3082 5469 3.076621 TCAAGTTGAGCTGCATAACCAG 58.923 45.455 0.08 8.06 35.93 4.00
3097 5484 5.450965 GCATAACCAGCAACAGCATAAGAAT 60.451 40.000 0.00 0.00 0.00 2.40
3194 5593 6.094048 GCTTTATAGCTGAATCAAAGGTGACA 59.906 38.462 0.00 0.00 44.27 3.58
3195 5594 7.362056 GCTTTATAGCTGAATCAAAGGTGACAA 60.362 37.037 0.00 0.00 44.27 3.18
3242 5641 3.066621 TCACAACTTTGGCTAAGCACTTG 59.933 43.478 8.62 8.42 37.37 3.16
3270 5669 5.014534 TCAAGGGGTAGACAAGGTAAGTA 57.985 43.478 0.00 0.00 0.00 2.24
3271 5670 5.405279 TCAAGGGGTAGACAAGGTAAGTAA 58.595 41.667 0.00 0.00 0.00 2.24
3272 5671 5.246883 TCAAGGGGTAGACAAGGTAAGTAAC 59.753 44.000 0.00 0.00 0.00 2.50
3273 5672 5.020941 AGGGGTAGACAAGGTAAGTAACT 57.979 43.478 0.00 0.00 0.00 2.24
3274 5673 5.409712 AGGGGTAGACAAGGTAAGTAACTT 58.590 41.667 0.00 0.00 0.00 2.66
3275 5674 5.848369 AGGGGTAGACAAGGTAAGTAACTTT 59.152 40.000 0.00 0.00 0.00 2.66
3277 5676 5.936372 GGGTAGACAAGGTAAGTAACTTTGG 59.064 44.000 5.22 0.00 46.58 3.28
3288 5692 4.957684 AGTAACTTTGGCTACAGACTGT 57.042 40.909 13.68 13.68 0.00 3.55
3358 5762 4.384056 ACAGACAGACATATAGCATTGGC 58.616 43.478 0.00 0.00 41.61 4.52
3397 5801 7.199167 TCTCATATCAGAGAATTTGGGACAA 57.801 36.000 0.00 0.00 42.35 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 7.820386 TGCATTTTCTCCTCGTAATACTACAAA 59.180 33.333 0.00 0.00 0.00 2.83
180 213 5.046950 GGTGCTTCTTCTTCCTTCTTCTCTA 60.047 44.000 0.00 0.00 0.00 2.43
192 1369 1.517242 CTTGCTCGGTGCTTCTTCTT 58.483 50.000 3.53 0.00 43.37 2.52
233 1531 2.162681 CCCTGGATTGAGCTTCGTTTT 58.837 47.619 0.00 0.00 0.00 2.43
242 1540 5.072741 TCTGTTTCTTTTCCCTGGATTGAG 58.927 41.667 0.00 0.00 0.00 3.02
244 1542 5.990120 ATCTGTTTCTTTTCCCTGGATTG 57.010 39.130 0.00 0.00 0.00 2.67
301 1599 7.173907 CGAAACCTGGCTCTGATATGATTATTT 59.826 37.037 0.00 0.00 0.00 1.40
302 1600 6.652481 CGAAACCTGGCTCTGATATGATTATT 59.348 38.462 0.00 0.00 0.00 1.40
303 1601 6.014242 TCGAAACCTGGCTCTGATATGATTAT 60.014 38.462 0.00 0.00 0.00 1.28
304 1602 5.304357 TCGAAACCTGGCTCTGATATGATTA 59.696 40.000 0.00 0.00 0.00 1.75
310 1608 2.365617 GGATCGAAACCTGGCTCTGATA 59.634 50.000 0.00 0.00 0.00 2.15
313 1611 0.539051 AGGATCGAAACCTGGCTCTG 59.461 55.000 12.66 0.00 36.30 3.35
321 1619 0.107654 CAGGTCCCAGGATCGAAACC 60.108 60.000 0.00 0.00 0.00 3.27
405 1703 6.821160 GGAAGAGAAACTACTACTAGTACCGT 59.179 42.308 0.00 0.00 32.46 4.83
413 1711 4.523558 AGCGTTGGAAGAGAAACTACTACT 59.476 41.667 0.00 0.00 0.00 2.57
416 1714 5.464030 TTAGCGTTGGAAGAGAAACTACT 57.536 39.130 0.00 0.00 0.00 2.57
417 1715 4.091655 GCTTAGCGTTGGAAGAGAAACTAC 59.908 45.833 0.00 0.00 0.00 2.73
420 1718 2.806244 TGCTTAGCGTTGGAAGAGAAAC 59.194 45.455 0.00 0.00 0.00 2.78
421 1719 3.120321 TGCTTAGCGTTGGAAGAGAAA 57.880 42.857 0.00 0.00 0.00 2.52
422 1720 2.831685 TGCTTAGCGTTGGAAGAGAA 57.168 45.000 0.00 0.00 0.00 2.87
423 1721 2.735444 CGATGCTTAGCGTTGGAAGAGA 60.735 50.000 5.78 0.00 0.00 3.10
424 1722 1.590238 CGATGCTTAGCGTTGGAAGAG 59.410 52.381 5.78 0.00 0.00 2.85
425 1723 1.640428 CGATGCTTAGCGTTGGAAGA 58.360 50.000 5.78 0.00 0.00 2.87
437 1735 2.017049 GATAGGTTGGTTGCGATGCTT 58.983 47.619 0.00 0.00 0.00 3.91
442 1740 0.392461 GCCTGATAGGTTGGTTGCGA 60.392 55.000 0.00 0.00 37.80 5.10
445 1743 2.749621 GTGAAGCCTGATAGGTTGGTTG 59.250 50.000 0.00 0.00 37.80 3.77
446 1744 2.375174 TGTGAAGCCTGATAGGTTGGTT 59.625 45.455 0.00 0.00 37.80 3.67
448 1746 2.026822 AGTGTGAAGCCTGATAGGTTGG 60.027 50.000 0.00 0.00 37.80 3.77
449 1747 3.005554 CAGTGTGAAGCCTGATAGGTTG 58.994 50.000 0.00 0.00 37.80 3.77
450 1748 2.639839 ACAGTGTGAAGCCTGATAGGTT 59.360 45.455 0.00 0.00 37.80 3.50
451 1749 2.260822 ACAGTGTGAAGCCTGATAGGT 58.739 47.619 0.00 0.00 37.80 3.08
455 1753 1.673033 GCGTACAGTGTGAAGCCTGAT 60.673 52.381 5.88 0.00 32.93 2.90
457 1755 0.319900 AGCGTACAGTGTGAAGCCTG 60.320 55.000 5.88 0.00 34.82 4.85
459 1757 1.901650 GCAGCGTACAGTGTGAAGCC 61.902 60.000 5.88 0.00 0.00 4.35
462 1760 1.221466 GCTGCAGCGTACAGTGTGAA 61.221 55.000 25.23 0.00 37.47 3.18
463 1761 1.664649 GCTGCAGCGTACAGTGTGA 60.665 57.895 25.23 0.00 37.47 3.58
482 1784 3.381590 CCATGTCTATCCACACGAGAGAA 59.618 47.826 0.00 0.00 40.47 2.87
489 1791 1.065491 TGGTGCCATGTCTATCCACAC 60.065 52.381 0.00 0.00 0.00 3.82
498 1800 0.378257 CGTAATGCTGGTGCCATGTC 59.622 55.000 0.00 0.00 38.71 3.06
513 1815 0.179100 GCTGCATCTGAGGCTCGTAA 60.179 55.000 15.78 0.00 0.00 3.18
521 1823 2.124403 GGGGGTGCTGCATCTGAG 60.124 66.667 13.32 0.00 0.00 3.35
543 1845 1.598130 AACTCTGTGAGCAACGGGC 60.598 57.895 0.00 0.00 45.30 6.13
544 1846 1.845809 GCAACTCTGTGAGCAACGGG 61.846 60.000 0.00 0.00 35.67 5.28
545 1847 1.159713 TGCAACTCTGTGAGCAACGG 61.160 55.000 0.00 0.00 33.48 4.44
546 1848 0.041839 GTGCAACTCTGTGAGCAACG 60.042 55.000 0.00 0.00 38.91 4.10
547 1849 3.833706 GTGCAACTCTGTGAGCAAC 57.166 52.632 0.00 0.00 38.91 4.17
608 1910 8.331931 ACTATACTTTACTCCATGGGAATTGA 57.668 34.615 13.02 0.00 0.00 2.57
611 1913 7.931948 CGAAACTATACTTTACTCCATGGGAAT 59.068 37.037 13.02 0.00 0.00 3.01
652 1967 1.678970 GTTGTCTGTGGGGATGCCC 60.679 63.158 16.99 16.99 44.51 5.36
664 1979 1.918293 TGGATCGCAGGGGTTGTCT 60.918 57.895 0.00 0.00 0.00 3.41
725 2040 2.050442 GCACGCAAAACTTCCGGG 60.050 61.111 0.00 0.00 0.00 5.73
775 2090 5.722021 ATTTTTAAGGTCGCTTTGTGGAT 57.278 34.783 0.00 0.00 0.00 3.41
776 2091 6.402766 CGATATTTTTAAGGTCGCTTTGTGGA 60.403 38.462 0.00 0.00 0.00 4.02
946 2268 2.551270 AGGCAGGAACAGATCAGGTAA 58.449 47.619 0.00 0.00 0.00 2.85
976 2307 2.639751 GAAAAAGTGCGTGTGCTACTG 58.360 47.619 0.00 0.00 43.34 2.74
987 2318 2.151202 TCCTCCATCACGAAAAAGTGC 58.849 47.619 0.00 0.00 41.61 4.40
1062 2420 0.682855 CCTCCTGCTCTTCCTCTCGT 60.683 60.000 0.00 0.00 0.00 4.18
1253 2611 2.736236 CAGAGACAGCAAGCGCGT 60.736 61.111 8.43 0.00 45.49 6.01
1348 2706 0.951040 AAGCGCAGTGACTTACCAGC 60.951 55.000 11.47 0.00 0.00 4.85
1350 2708 1.961793 AAAAGCGCAGTGACTTACCA 58.038 45.000 11.47 0.00 0.00 3.25
1358 2716 2.484264 AGGCTAAAGTAAAAGCGCAGTG 59.516 45.455 11.47 0.00 39.71 3.66
1369 2727 1.641123 GCGCGGCAAAGGCTAAAGTA 61.641 55.000 8.83 0.00 40.87 2.24
1370 2728 2.978018 GCGCGGCAAAGGCTAAAGT 61.978 57.895 8.83 0.00 40.87 2.66
1371 2729 2.202479 GCGCGGCAAAGGCTAAAG 60.202 61.111 8.83 0.00 40.87 1.85
1443 2806 1.272769 CTTCGTCCTCGTCTTTCCCTT 59.727 52.381 0.00 0.00 38.33 3.95
1584 2947 1.140652 CTCCCATCTCCTTCTCCTTGC 59.859 57.143 0.00 0.00 0.00 4.01
1688 3051 3.885297 AGGATATGGCGGAACTGAAAATG 59.115 43.478 0.00 0.00 0.00 2.32
1715 3078 2.287547 GCTGAAACAATCGAGGCAACAA 60.288 45.455 0.00 0.00 41.41 2.83
1749 3112 4.819769 CAAAAGAACAGAGGGAGAGAGAG 58.180 47.826 0.00 0.00 0.00 3.20
1753 3116 2.039613 AGGCAAAAGAACAGAGGGAGAG 59.960 50.000 0.00 0.00 0.00 3.20
1754 3117 2.039084 GAGGCAAAAGAACAGAGGGAGA 59.961 50.000 0.00 0.00 0.00 3.71
1755 3118 2.431454 GAGGCAAAAGAACAGAGGGAG 58.569 52.381 0.00 0.00 0.00 4.30
1756 3119 1.270839 CGAGGCAAAAGAACAGAGGGA 60.271 52.381 0.00 0.00 0.00 4.20
1757 3120 1.160137 CGAGGCAAAAGAACAGAGGG 58.840 55.000 0.00 0.00 0.00 4.30
1759 3122 1.196354 CAGCGAGGCAAAAGAACAGAG 59.804 52.381 0.00 0.00 0.00 3.35
1761 3124 0.386478 GCAGCGAGGCAAAAGAACAG 60.386 55.000 0.00 0.00 0.00 3.16
1763 3126 0.386478 CTGCAGCGAGGCAAAAGAAC 60.386 55.000 0.00 0.00 44.40 3.01
1764 3127 0.534877 TCTGCAGCGAGGCAAAAGAA 60.535 50.000 9.47 0.00 44.40 2.52
1765 3128 1.071299 TCTGCAGCGAGGCAAAAGA 59.929 52.632 9.47 0.00 44.40 2.52
1766 3129 1.208614 GTCTGCAGCGAGGCAAAAG 59.791 57.895 9.47 0.00 44.40 2.27
1776 3139 4.767255 CCCCCGAGTGTCTGCAGC 62.767 72.222 9.47 4.92 0.00 5.25
1850 3213 8.897752 AGAAATAACAAGTGCCAAATCTATCTC 58.102 33.333 0.00 0.00 0.00 2.75
2025 3448 2.948979 TCTTTCCACCACATGTTCACAC 59.051 45.455 0.00 0.00 0.00 3.82
2026 3449 3.289407 TCTTTCCACCACATGTTCACA 57.711 42.857 0.00 0.00 0.00 3.58
2106 3529 7.255070 GCTCATCTCATTTTCTTGGTAATCCTC 60.255 40.741 0.00 0.00 34.23 3.71
2153 4228 6.231211 TGGTTTCAGAGAACTCTATTTGACC 58.769 40.000 3.95 8.77 37.98 4.02
2228 4303 5.641209 TCTTGTATCTTTGCTTCAGAGAAGC 59.359 40.000 21.38 21.38 43.29 3.86
2248 4323 2.766263 TCACTAGCAGGGGTGTATCTTG 59.234 50.000 0.00 0.00 35.26 3.02
2333 4408 1.271163 ACGACACGATTTTGGGGACAT 60.271 47.619 0.00 0.00 42.32 3.06
2378 4453 1.287146 AGCTGCATTTCTTCCTCCCAT 59.713 47.619 1.02 0.00 0.00 4.00
2453 4528 2.325484 TGTTTCTCCAGTCTGTAGCCA 58.675 47.619 0.00 0.00 0.00 4.75
2495 4842 5.047847 CCCATGATTTTGCTCTGCTAAATG 58.952 41.667 14.37 4.78 42.03 2.32
2497 4844 4.343231 TCCCATGATTTTGCTCTGCTAAA 58.657 39.130 0.00 2.24 37.61 1.85
2498 4845 3.949754 CTCCCATGATTTTGCTCTGCTAA 59.050 43.478 0.00 0.00 0.00 3.09
2499 4846 3.548770 CTCCCATGATTTTGCTCTGCTA 58.451 45.455 0.00 0.00 0.00 3.49
2500 4847 2.376109 CTCCCATGATTTTGCTCTGCT 58.624 47.619 0.00 0.00 0.00 4.24
2501 4848 1.407979 CCTCCCATGATTTTGCTCTGC 59.592 52.381 0.00 0.00 0.00 4.26
2502 4849 3.008835 TCCTCCCATGATTTTGCTCTG 57.991 47.619 0.00 0.00 0.00 3.35
2503 4850 3.267812 TCTTCCTCCCATGATTTTGCTCT 59.732 43.478 0.00 0.00 0.00 4.09
2504 4851 3.624777 TCTTCCTCCCATGATTTTGCTC 58.375 45.455 0.00 0.00 0.00 4.26
2505 4852 3.744940 TCTTCCTCCCATGATTTTGCT 57.255 42.857 0.00 0.00 0.00 3.91
2506 4853 4.806640 TTTCTTCCTCCCATGATTTTGC 57.193 40.909 0.00 0.00 0.00 3.68
2507 4854 5.114081 GCATTTCTTCCTCCCATGATTTTG 58.886 41.667 0.00 0.00 0.00 2.44
2508 4855 4.778958 TGCATTTCTTCCTCCCATGATTTT 59.221 37.500 0.00 0.00 0.00 1.82
2509 4856 4.355549 TGCATTTCTTCCTCCCATGATTT 58.644 39.130 0.00 0.00 0.00 2.17
2510 4857 3.958798 CTGCATTTCTTCCTCCCATGATT 59.041 43.478 0.00 0.00 0.00 2.57
2511 4858 3.563223 CTGCATTTCTTCCTCCCATGAT 58.437 45.455 0.00 0.00 0.00 2.45
2512 4859 2.947243 GCTGCATTTCTTCCTCCCATGA 60.947 50.000 0.00 0.00 0.00 3.07
2513 4860 1.407979 GCTGCATTTCTTCCTCCCATG 59.592 52.381 0.00 0.00 0.00 3.66
2514 4861 1.287146 AGCTGCATTTCTTCCTCCCAT 59.713 47.619 1.02 0.00 0.00 4.00
2515 4862 0.700564 AGCTGCATTTCTTCCTCCCA 59.299 50.000 1.02 0.00 0.00 4.37
2516 4863 2.570135 CTAGCTGCATTTCTTCCTCCC 58.430 52.381 1.02 0.00 0.00 4.30
2517 4864 1.946081 GCTAGCTGCATTTCTTCCTCC 59.054 52.381 7.70 0.00 42.31 4.30
2518 4865 2.916640 AGCTAGCTGCATTTCTTCCTC 58.083 47.619 18.57 0.00 45.94 3.71
2519 4866 3.739519 CGTAGCTAGCTGCATTTCTTCCT 60.740 47.826 28.85 1.72 45.94 3.36
2520 4867 2.541762 CGTAGCTAGCTGCATTTCTTCC 59.458 50.000 28.85 4.30 45.94 3.46
2521 4868 3.448686 TCGTAGCTAGCTGCATTTCTTC 58.551 45.455 28.85 7.77 45.94 2.87
2522 4869 3.131223 TCTCGTAGCTAGCTGCATTTCTT 59.869 43.478 28.85 3.19 45.94 2.52
2523 4870 2.690497 TCTCGTAGCTAGCTGCATTTCT 59.310 45.455 28.85 3.92 45.94 2.52
2524 4871 3.085443 TCTCGTAGCTAGCTGCATTTC 57.915 47.619 28.85 11.29 45.94 2.17
2525 4872 3.742433 ATCTCGTAGCTAGCTGCATTT 57.258 42.857 28.85 10.46 45.94 2.32
2526 4873 3.388308 CAATCTCGTAGCTAGCTGCATT 58.612 45.455 28.85 19.02 45.94 3.56
2527 4874 2.865670 GCAATCTCGTAGCTAGCTGCAT 60.866 50.000 28.85 14.61 45.94 3.96
2528 4875 1.536922 GCAATCTCGTAGCTAGCTGCA 60.537 52.381 28.85 16.50 45.94 4.41
2529 4876 1.135867 GCAATCTCGTAGCTAGCTGC 58.864 55.000 27.68 24.53 43.29 5.25
2530 4877 2.498807 TGCAATCTCGTAGCTAGCTG 57.501 50.000 27.68 11.72 0.00 4.24
2531 4878 4.279671 ACTTATGCAATCTCGTAGCTAGCT 59.720 41.667 23.12 23.12 0.00 3.32
2532 4879 4.551388 ACTTATGCAATCTCGTAGCTAGC 58.449 43.478 6.62 6.62 0.00 3.42
2533 4880 5.763088 TGACTTATGCAATCTCGTAGCTAG 58.237 41.667 0.00 0.00 0.00 3.42
2534 4881 5.767816 TGACTTATGCAATCTCGTAGCTA 57.232 39.130 0.00 0.00 0.00 3.32
2535 4882 4.655762 TGACTTATGCAATCTCGTAGCT 57.344 40.909 0.00 0.00 0.00 3.32
2536 4883 5.718649 TTTGACTTATGCAATCTCGTAGC 57.281 39.130 0.00 0.00 0.00 3.58
2537 4884 6.630443 GCATTTTGACTTATGCAATCTCGTAG 59.370 38.462 0.00 0.00 44.99 3.51
2538 4885 6.486248 GCATTTTGACTTATGCAATCTCGTA 58.514 36.000 0.00 0.00 44.99 3.43
2539 4886 5.335127 GCATTTTGACTTATGCAATCTCGT 58.665 37.500 0.00 0.00 44.99 4.18
2540 4887 4.435554 CGCATTTTGACTTATGCAATCTCG 59.564 41.667 0.00 0.00 45.73 4.04
2541 4888 5.335127 ACGCATTTTGACTTATGCAATCTC 58.665 37.500 0.00 0.00 45.73 2.75
2542 4889 5.314923 ACGCATTTTGACTTATGCAATCT 57.685 34.783 0.00 0.00 45.73 2.40
2543 4890 7.323656 GGTATACGCATTTTGACTTATGCAATC 59.676 37.037 0.00 0.00 45.73 2.67
2544 4891 7.138736 GGTATACGCATTTTGACTTATGCAAT 58.861 34.615 0.00 0.00 45.73 3.56
2545 4892 6.094186 TGGTATACGCATTTTGACTTATGCAA 59.906 34.615 0.00 0.00 45.73 4.08
2546 4893 5.586643 TGGTATACGCATTTTGACTTATGCA 59.413 36.000 0.00 0.00 45.73 3.96
2547 4894 5.907391 GTGGTATACGCATTTTGACTTATGC 59.093 40.000 0.00 0.00 42.82 3.14
2548 4895 7.010697 TGTGGTATACGCATTTTGACTTATG 57.989 36.000 0.00 0.00 33.95 1.90
2560 4907 1.139853 TCATGGCATGTGGTATACGCA 59.860 47.619 25.62 0.69 44.94 5.24
2561 4908 1.531149 GTCATGGCATGTGGTATACGC 59.469 52.381 25.62 4.27 0.00 4.42
2562 4909 2.832563 TGTCATGGCATGTGGTATACG 58.167 47.619 25.62 0.00 0.00 3.06
2563 4910 4.388485 TGATGTCATGGCATGTGGTATAC 58.612 43.478 25.62 16.00 0.00 1.47
2564 4911 4.703379 TGATGTCATGGCATGTGGTATA 57.297 40.909 25.62 6.59 0.00 1.47
2565 4912 3.581265 TGATGTCATGGCATGTGGTAT 57.419 42.857 25.62 15.47 0.00 2.73
2566 4913 3.362870 TTGATGTCATGGCATGTGGTA 57.637 42.857 25.62 11.75 0.00 3.25
2567 4914 2.219080 TTGATGTCATGGCATGTGGT 57.781 45.000 25.62 13.12 0.00 4.16
2568 4915 2.494471 AGTTTGATGTCATGGCATGTGG 59.506 45.455 25.62 1.95 0.00 4.17
2569 4916 3.507786 CAGTTTGATGTCATGGCATGTG 58.492 45.455 25.62 10.49 0.00 3.21
2570 4917 2.494471 CCAGTTTGATGTCATGGCATGT 59.506 45.455 25.62 8.10 0.00 3.21
2571 4918 3.159353 CCAGTTTGATGTCATGGCATG 57.841 47.619 19.48 21.42 0.00 4.06
2575 4922 3.346315 TGTAGCCAGTTTGATGTCATGG 58.654 45.455 0.00 0.00 0.00 3.66
2576 4923 4.093998 GTCTGTAGCCAGTTTGATGTCATG 59.906 45.833 0.00 0.00 39.82 3.07
2577 4924 4.019860 AGTCTGTAGCCAGTTTGATGTCAT 60.020 41.667 0.00 0.00 39.82 3.06
2578 4925 3.324846 AGTCTGTAGCCAGTTTGATGTCA 59.675 43.478 0.00 0.00 39.82 3.58
2579 4926 3.681897 CAGTCTGTAGCCAGTTTGATGTC 59.318 47.826 0.00 0.00 39.82 3.06
2580 4927 3.557898 CCAGTCTGTAGCCAGTTTGATGT 60.558 47.826 0.00 0.00 39.82 3.06
2581 4928 3.005554 CCAGTCTGTAGCCAGTTTGATG 58.994 50.000 0.00 0.00 39.82 3.07
2582 4929 2.906389 TCCAGTCTGTAGCCAGTTTGAT 59.094 45.455 0.00 0.00 39.82 2.57
2583 4930 2.300152 CTCCAGTCTGTAGCCAGTTTGA 59.700 50.000 0.00 0.00 39.82 2.69
2584 4931 2.300152 TCTCCAGTCTGTAGCCAGTTTG 59.700 50.000 0.00 0.00 39.82 2.93
2585 4932 2.609747 TCTCCAGTCTGTAGCCAGTTT 58.390 47.619 0.00 0.00 39.82 2.66
2586 4933 2.310779 TCTCCAGTCTGTAGCCAGTT 57.689 50.000 0.00 0.00 39.82 3.16
2587 4934 2.300437 GTTTCTCCAGTCTGTAGCCAGT 59.700 50.000 0.00 0.00 39.82 4.00
2588 4935 2.300152 TGTTTCTCCAGTCTGTAGCCAG 59.700 50.000 0.00 0.00 40.25 4.85
2589 4936 2.325484 TGTTTCTCCAGTCTGTAGCCA 58.675 47.619 0.00 0.00 0.00 4.75
2590 4937 3.402628 TTGTTTCTCCAGTCTGTAGCC 57.597 47.619 0.00 0.00 0.00 3.93
2591 4938 6.422400 GCTATATTGTTTCTCCAGTCTGTAGC 59.578 42.308 0.00 0.00 0.00 3.58
2592 4939 7.721402 AGCTATATTGTTTCTCCAGTCTGTAG 58.279 38.462 0.00 0.00 0.00 2.74
2593 4940 7.661536 AGCTATATTGTTTCTCCAGTCTGTA 57.338 36.000 0.00 0.00 0.00 2.74
2594 4941 6.552445 AGCTATATTGTTTCTCCAGTCTGT 57.448 37.500 0.00 0.00 0.00 3.41
2595 4942 7.721402 AGTAGCTATATTGTTTCTCCAGTCTG 58.279 38.462 0.00 0.00 0.00 3.51
2596 4943 7.561722 TGAGTAGCTATATTGTTTCTCCAGTCT 59.438 37.037 0.00 0.00 0.00 3.24
2597 4944 7.717568 TGAGTAGCTATATTGTTTCTCCAGTC 58.282 38.462 0.00 0.00 0.00 3.51
2598 4945 7.343316 ACTGAGTAGCTATATTGTTTCTCCAGT 59.657 37.037 0.00 0.00 0.00 4.00
2599 4946 7.651304 CACTGAGTAGCTATATTGTTTCTCCAG 59.349 40.741 0.00 0.00 0.00 3.86
2600 4947 7.492524 CACTGAGTAGCTATATTGTTTCTCCA 58.507 38.462 0.00 0.00 0.00 3.86
2601 4948 6.422400 GCACTGAGTAGCTATATTGTTTCTCC 59.578 42.308 0.00 0.00 0.00 3.71
2602 4949 6.143118 CGCACTGAGTAGCTATATTGTTTCTC 59.857 42.308 0.00 0.00 0.00 2.87
2603 4950 5.980116 CGCACTGAGTAGCTATATTGTTTCT 59.020 40.000 0.00 0.00 0.00 2.52
2604 4951 5.977725 TCGCACTGAGTAGCTATATTGTTTC 59.022 40.000 0.00 0.00 0.00 2.78
2605 4952 5.902681 TCGCACTGAGTAGCTATATTGTTT 58.097 37.500 0.00 0.00 0.00 2.83
2606 4953 5.515797 TCGCACTGAGTAGCTATATTGTT 57.484 39.130 0.00 0.00 0.00 2.83
2607 4954 5.465051 CATCGCACTGAGTAGCTATATTGT 58.535 41.667 0.00 0.00 0.00 2.71
2608 4955 4.325741 GCATCGCACTGAGTAGCTATATTG 59.674 45.833 0.00 0.00 0.00 1.90
2609 4956 4.021981 TGCATCGCACTGAGTAGCTATATT 60.022 41.667 0.00 0.00 31.71 1.28
2610 4957 3.507622 TGCATCGCACTGAGTAGCTATAT 59.492 43.478 0.00 0.00 31.71 0.86
2611 4958 2.884639 TGCATCGCACTGAGTAGCTATA 59.115 45.455 0.00 0.00 31.71 1.31
2612 4959 1.683385 TGCATCGCACTGAGTAGCTAT 59.317 47.619 0.00 0.00 31.71 2.97
2613 4960 1.102978 TGCATCGCACTGAGTAGCTA 58.897 50.000 0.00 0.00 31.71 3.32
2614 4961 0.463204 ATGCATCGCACTGAGTAGCT 59.537 50.000 0.00 0.00 43.04 3.32
2615 4962 1.293924 AATGCATCGCACTGAGTAGC 58.706 50.000 0.00 0.00 43.04 3.58
2616 4963 3.060003 GCTAAATGCATCGCACTGAGTAG 60.060 47.826 0.00 0.00 43.04 2.57
2617 4964 2.866156 GCTAAATGCATCGCACTGAGTA 59.134 45.455 0.00 0.00 43.04 2.59
2618 4965 1.667724 GCTAAATGCATCGCACTGAGT 59.332 47.619 0.00 0.00 43.04 3.41
2619 4966 2.380102 GCTAAATGCATCGCACTGAG 57.620 50.000 0.00 0.00 43.04 3.35
2630 4977 4.506654 CCATGATTTTGCTCTGCTAAATGC 59.493 41.667 14.37 8.40 42.03 3.56
2631 4978 5.047847 CCCATGATTTTGCTCTGCTAAATG 58.952 41.667 14.37 4.78 42.03 2.32
2632 4979 4.957954 TCCCATGATTTTGCTCTGCTAAAT 59.042 37.500 10.60 10.60 43.85 1.40
2633 4980 4.343231 TCCCATGATTTTGCTCTGCTAAA 58.657 39.130 0.00 2.24 37.61 1.85
2634 4981 3.949754 CTCCCATGATTTTGCTCTGCTAA 59.050 43.478 0.00 0.00 0.00 3.09
2635 4982 3.548770 CTCCCATGATTTTGCTCTGCTA 58.451 45.455 0.00 0.00 0.00 3.49
2636 4983 2.376109 CTCCCATGATTTTGCTCTGCT 58.624 47.619 0.00 0.00 0.00 4.24
2637 4984 1.407979 CCTCCCATGATTTTGCTCTGC 59.592 52.381 0.00 0.00 0.00 4.26
2638 4985 3.008835 TCCTCCCATGATTTTGCTCTG 57.991 47.619 0.00 0.00 0.00 3.35
2639 4986 3.267812 TCTTCCTCCCATGATTTTGCTCT 59.732 43.478 0.00 0.00 0.00 4.09
2640 4987 3.624777 TCTTCCTCCCATGATTTTGCTC 58.375 45.455 0.00 0.00 0.00 4.26
2641 4988 3.744940 TCTTCCTCCCATGATTTTGCT 57.255 42.857 0.00 0.00 0.00 3.91
2642 4989 4.806640 TTTCTTCCTCCCATGATTTTGC 57.193 40.909 0.00 0.00 0.00 3.68
2643 4990 5.114081 GCATTTCTTCCTCCCATGATTTTG 58.886 41.667 0.00 0.00 0.00 2.44
2644 4991 4.778958 TGCATTTCTTCCTCCCATGATTTT 59.221 37.500 0.00 0.00 0.00 1.82
2645 4992 4.355549 TGCATTTCTTCCTCCCATGATTT 58.644 39.130 0.00 0.00 0.00 2.17
2646 4993 3.958798 CTGCATTTCTTCCTCCCATGATT 59.041 43.478 0.00 0.00 0.00 2.57
2647 4994 3.563223 CTGCATTTCTTCCTCCCATGAT 58.437 45.455 0.00 0.00 0.00 2.45
2648 4995 2.947243 GCTGCATTTCTTCCTCCCATGA 60.947 50.000 0.00 0.00 0.00 3.07
2649 4996 1.407979 GCTGCATTTCTTCCTCCCATG 59.592 52.381 0.00 0.00 0.00 3.66
2650 4997 1.287146 AGCTGCATTTCTTCCTCCCAT 59.713 47.619 1.02 0.00 0.00 4.00
2651 4998 0.700564 AGCTGCATTTCTTCCTCCCA 59.299 50.000 1.02 0.00 0.00 4.37
2652 4999 2.570135 CTAGCTGCATTTCTTCCTCCC 58.430 52.381 1.02 0.00 0.00 4.30
2653 5000 1.946081 GCTAGCTGCATTTCTTCCTCC 59.054 52.381 7.70 0.00 42.31 4.30
2654 5001 2.916640 AGCTAGCTGCATTTCTTCCTC 58.083 47.619 18.57 0.00 45.94 3.71
2655 5002 3.739519 CGTAGCTAGCTGCATTTCTTCCT 60.740 47.826 28.85 1.72 45.94 3.36
2656 5003 2.541762 CGTAGCTAGCTGCATTTCTTCC 59.458 50.000 28.85 4.30 45.94 3.46
2657 5004 3.448686 TCGTAGCTAGCTGCATTTCTTC 58.551 45.455 28.85 7.77 45.94 2.87
2658 5005 3.131223 TCTCGTAGCTAGCTGCATTTCTT 59.869 43.478 28.85 3.19 45.94 2.52
2659 5006 2.690497 TCTCGTAGCTAGCTGCATTTCT 59.310 45.455 28.85 3.92 45.94 2.52
2660 5007 3.085443 TCTCGTAGCTAGCTGCATTTC 57.915 47.619 28.85 11.29 45.94 2.17
2661 5008 3.742433 ATCTCGTAGCTAGCTGCATTT 57.258 42.857 28.85 10.46 45.94 2.32
2662 5009 3.388308 CAATCTCGTAGCTAGCTGCATT 58.612 45.455 28.85 19.02 45.94 3.56
2663 5010 2.865670 GCAATCTCGTAGCTAGCTGCAT 60.866 50.000 28.85 14.61 45.94 3.96
2664 5011 1.536922 GCAATCTCGTAGCTAGCTGCA 60.537 52.381 28.85 16.50 45.94 4.41
2665 5012 1.135867 GCAATCTCGTAGCTAGCTGC 58.864 55.000 27.68 24.53 43.29 5.25
2666 5013 2.498807 TGCAATCTCGTAGCTAGCTG 57.501 50.000 27.68 11.72 0.00 4.24
2667 5014 4.279671 ACTTATGCAATCTCGTAGCTAGCT 59.720 41.667 23.12 23.12 0.00 3.32
2668 5015 4.551388 ACTTATGCAATCTCGTAGCTAGC 58.449 43.478 6.62 6.62 0.00 3.42
2669 5016 5.763088 TGACTTATGCAATCTCGTAGCTAG 58.237 41.667 0.00 0.00 0.00 3.42
2670 5017 5.767816 TGACTTATGCAATCTCGTAGCTA 57.232 39.130 0.00 0.00 0.00 3.32
2671 5018 4.655762 TGACTTATGCAATCTCGTAGCT 57.344 40.909 0.00 0.00 0.00 3.32
2672 5019 5.718649 TTTGACTTATGCAATCTCGTAGC 57.281 39.130 0.00 0.00 0.00 3.58
2673 5020 6.630443 GCATTTTGACTTATGCAATCTCGTAG 59.370 38.462 0.00 0.00 44.99 3.51
2674 5021 6.486248 GCATTTTGACTTATGCAATCTCGTA 58.514 36.000 0.00 0.00 44.99 3.43
2675 5022 5.335127 GCATTTTGACTTATGCAATCTCGT 58.665 37.500 0.00 0.00 44.99 4.18
2704 5051 2.494471 AGTTTGATGTCATGGCATGTGG 59.506 45.455 25.62 1.95 0.00 4.17
2705 5052 3.507786 CAGTTTGATGTCATGGCATGTG 58.492 45.455 25.62 10.49 0.00 3.21
2706 5053 2.494471 CCAGTTTGATGTCATGGCATGT 59.506 45.455 25.62 8.10 0.00 3.21
2711 5058 3.346315 TGTAGCCAGTTTGATGTCATGG 58.654 45.455 0.00 0.00 0.00 3.66
2716 5072 3.557898 CCAGTCTGTAGCCAGTTTGATGT 60.558 47.826 0.00 0.00 39.82 3.06
2737 5093 6.422400 GCACTGAGTAGCTATATTGTTTCTCC 59.578 42.308 0.00 0.00 0.00 3.71
2738 5094 6.143118 CGCACTGAGTAGCTATATTGTTTCTC 59.857 42.308 0.00 0.00 0.00 2.87
2739 5095 5.980116 CGCACTGAGTAGCTATATTGTTTCT 59.020 40.000 0.00 0.00 0.00 2.52
2740 5096 5.977725 TCGCACTGAGTAGCTATATTGTTTC 59.022 40.000 0.00 0.00 0.00 2.78
2741 5097 5.902681 TCGCACTGAGTAGCTATATTGTTT 58.097 37.500 0.00 0.00 0.00 2.83
2742 5098 5.515797 TCGCACTGAGTAGCTATATTGTT 57.484 39.130 0.00 0.00 0.00 2.83
2743 5099 5.465051 CATCGCACTGAGTAGCTATATTGT 58.535 41.667 0.00 0.00 0.00 2.71
2744 5100 4.861462 CCATCGCACTGAGTAGCTATATTG 59.139 45.833 0.00 0.00 0.00 1.90
2748 5104 2.587522 TCCATCGCACTGAGTAGCTAT 58.412 47.619 0.00 0.00 0.00 2.97
2763 5119 1.442857 CGTCTCGCGGCTATCCATC 60.443 63.158 6.13 0.00 36.85 3.51
2776 5136 4.201656 GGCGTGACCTAAATTTTACGTCTC 60.202 45.833 14.98 11.84 33.84 3.36
2797 5179 3.993081 GCATGTATGTACTCAGAGATGGC 59.007 47.826 3.79 0.00 37.15 4.40
2938 5322 5.791336 AGTTCATGGAGCGATATAACTGA 57.209 39.130 0.00 0.00 0.00 3.41
2980 5364 3.893763 TGCGTGGGTTTTGGTGCG 61.894 61.111 0.00 0.00 0.00 5.34
3004 5388 1.077501 TGGCCCTCAAGCTACATGC 60.078 57.895 0.00 0.00 43.29 4.06
3050 5434 5.066893 GCAGCTCAACTTGATATTTCATCCA 59.933 40.000 0.00 0.00 0.00 3.41
3065 5452 1.167851 TGCTGGTTATGCAGCTCAAC 58.832 50.000 0.00 0.00 44.19 3.18
3097 5484 2.612972 GCACTCTAGCACCACTAGCAAA 60.613 50.000 0.00 0.00 46.93 3.68
3203 5602 7.713764 AGTTGTGATTGCTTATTTTGAAACC 57.286 32.000 0.00 0.00 0.00 3.27
3242 5641 4.019231 ACCTTGTCTACCCCTTGATTCTTC 60.019 45.833 0.00 0.00 0.00 2.87
3270 5669 3.877508 GTCAACAGTCTGTAGCCAAAGTT 59.122 43.478 5.77 0.00 0.00 2.66
3271 5670 3.467803 GTCAACAGTCTGTAGCCAAAGT 58.532 45.455 5.77 0.00 0.00 2.66
3272 5671 2.808543 GGTCAACAGTCTGTAGCCAAAG 59.191 50.000 5.77 0.00 0.00 2.77
3273 5672 2.438021 AGGTCAACAGTCTGTAGCCAAA 59.562 45.455 5.77 0.00 0.00 3.28
3274 5673 2.047061 AGGTCAACAGTCTGTAGCCAA 58.953 47.619 5.77 0.00 0.00 4.52
3275 5674 1.344438 CAGGTCAACAGTCTGTAGCCA 59.656 52.381 5.77 0.00 0.00 4.75
3276 5675 1.338200 CCAGGTCAACAGTCTGTAGCC 60.338 57.143 5.77 8.85 0.00 3.93
3277 5676 1.941668 GCCAGGTCAACAGTCTGTAGC 60.942 57.143 5.77 1.17 0.00 3.58
3279 5678 1.070134 GTGCCAGGTCAACAGTCTGTA 59.930 52.381 5.77 0.00 0.00 2.74
3288 5692 1.621814 GTAGTAGGTGTGCCAGGTCAA 59.378 52.381 0.00 0.00 37.19 3.18
3397 5801 2.203337 TGCCAGGCGAGCAGTTTT 60.203 55.556 7.03 0.00 34.69 2.43
3406 5810 1.738099 GTAGTCAGTGTGCCAGGCG 60.738 63.158 7.03 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.