Multiple sequence alignment - TraesCS4B01G191000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G191000 chr4B 100.000 2797 0 0 2582 5378 413494202 413496998 0.000000e+00 5166.0
1 TraesCS4B01G191000 chr4B 100.000 2312 0 0 1 2312 413491621 413493932 0.000000e+00 4270.0
2 TraesCS4B01G191000 chr4B 99.275 276 2 0 4683 4958 413496167 413496442 2.890000e-137 499.0
3 TraesCS4B01G191000 chr4B 99.275 276 2 0 4547 4822 413496303 413496578 2.890000e-137 499.0
4 TraesCS4B01G191000 chr4B 98.571 140 2 0 4819 4958 413496167 413496306 1.160000e-61 248.0
5 TraesCS4B01G191000 chr4B 98.571 140 2 0 4547 4686 413496439 413496578 1.160000e-61 248.0
6 TraesCS4B01G191000 chr4A 93.922 2139 81 13 2587 4686 137531675 137529547 0.000000e+00 3184.0
7 TraesCS4B01G191000 chr4A 90.004 2351 153 34 4 2310 137534085 137531773 0.000000e+00 2964.0
8 TraesCS4B01G191000 chr4A 96.165 339 13 0 4828 5166 137529677 137529339 6.090000e-154 555.0
9 TraesCS4B01G191000 chr4A 96.947 131 4 0 4692 4822 137529677 137529547 2.520000e-53 220.0
10 TraesCS4B01G191000 chr4A 88.235 68 0 2 5304 5365 137528694 137528629 2.080000e-09 75.0
11 TraesCS4B01G191000 chr4D 93.791 1659 64 12 687 2310 335341487 335343141 0.000000e+00 2457.0
12 TraesCS4B01G191000 chr4D 91.961 1642 69 13 3074 4686 335344002 335345609 0.000000e+00 2242.0
13 TraesCS4B01G191000 chr4D 93.036 718 24 14 1 694 335340814 335341529 0.000000e+00 1026.0
14 TraesCS4B01G191000 chr4D 95.977 348 14 0 4819 5166 335345470 335345817 2.810000e-157 566.0
15 TraesCS4B01G191000 chr4D 93.636 220 4 3 2810 3019 335343783 335344002 2.420000e-83 320.0
16 TraesCS4B01G191000 chr4D 92.958 213 9 3 5166 5378 335345919 335346125 6.770000e-79 305.0
17 TraesCS4B01G191000 chr4D 96.000 175 7 0 2587 2761 335343240 335343414 8.820000e-73 285.0
18 TraesCS4B01G191000 chr4D 95.714 140 6 0 4683 4822 335345470 335345609 5.420000e-55 226.0
19 TraesCS4B01G191000 chr6A 86.862 1842 157 29 2807 4604 81117425 81115625 0.000000e+00 1982.0
20 TraesCS4B01G191000 chr6A 83.645 1070 95 35 759 1816 81121374 81120373 0.000000e+00 933.0
21 TraesCS4B01G191000 chr6A 87.069 464 49 6 1847 2310 81118086 81117634 1.030000e-141 514.0
22 TraesCS4B01G191000 chr6A 89.143 175 17 2 2587 2759 81117595 81117421 3.260000e-52 217.0
23 TraesCS4B01G191000 chr6D 86.634 1848 161 41 2829 4640 63766952 63765155 0.000000e+00 1965.0
24 TraesCS4B01G191000 chr6D 81.407 1393 132 49 759 2109 63768521 63767214 0.000000e+00 1020.0
25 TraesCS4B01G191000 chr6B 85.452 1306 107 45 1036 2302 137459063 137457802 0.000000e+00 1282.0
26 TraesCS4B01G191000 chr6B 90.572 891 67 8 2819 3698 137457510 137456626 0.000000e+00 1164.0
27 TraesCS4B01G191000 chr6B 84.081 691 62 25 3930 4604 137456096 137455438 1.640000e-174 623.0
28 TraesCS4B01G191000 chr6B 87.671 73 3 3 3706 3778 137456409 137456343 4.470000e-11 80.5
29 TraesCS4B01G191000 chr2D 93.632 424 25 2 1 423 37533927 37533505 2.730000e-177 632.0
30 TraesCS4B01G191000 chr2D 96.000 75 2 1 5227 5300 267220806 267220732 2.630000e-23 121.0
31 TraesCS4B01G191000 chr2B 93.632 424 25 2 1 423 65314282 65313860 2.730000e-177 632.0
32 TraesCS4B01G191000 chr2B 94.521 73 3 1 5227 5298 26705075 26705147 1.580000e-20 111.0
33 TraesCS4B01G191000 chr2B 94.521 73 3 1 5227 5298 26725719 26725791 1.580000e-20 111.0
34 TraesCS4B01G191000 chr2B 93.333 75 3 2 5226 5298 302616618 302616544 5.690000e-20 110.0
35 TraesCS4B01G191000 chr2A 92.793 333 22 2 1 332 42398683 42398352 1.050000e-131 481.0
36 TraesCS4B01G191000 chr1D 94.615 130 7 0 5037 5166 247002024 247001895 9.130000e-48 202.0
37 TraesCS4B01G191000 chr1D 94.521 73 3 1 5227 5298 26156934 26156862 1.580000e-20 111.0
38 TraesCS4B01G191000 chr1B 94.595 74 3 1 5226 5298 391043614 391043541 4.400000e-21 113.0
39 TraesCS4B01G191000 chr3B 94.521 73 3 1 5227 5298 354410933 354410861 1.580000e-20 111.0
40 TraesCS4B01G191000 chr3D 94.444 72 2 2 5227 5297 516077507 516077577 5.690000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G191000 chr4B 413491621 413496998 5377 False 1821.666667 5166 99.282000 1 5378 6 chr4B.!!$F1 5377
1 TraesCS4B01G191000 chr4A 137528629 137534085 5456 True 1399.600000 3184 93.054600 4 5365 5 chr4A.!!$R1 5361
2 TraesCS4B01G191000 chr4D 335340814 335346125 5311 False 928.375000 2457 94.134125 1 5378 8 chr4D.!!$F1 5377
3 TraesCS4B01G191000 chr6A 81115625 81121374 5749 True 911.500000 1982 86.679750 759 4604 4 chr6A.!!$R1 3845
4 TraesCS4B01G191000 chr6D 63765155 63768521 3366 True 1492.500000 1965 84.020500 759 4640 2 chr6D.!!$R1 3881
5 TraesCS4B01G191000 chr6B 137455438 137459063 3625 True 787.375000 1282 86.944000 1036 4604 4 chr6B.!!$R1 3568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 597 0.103208 ATCAAGTGAGCCGATCCGAC 59.897 55.000 0.00 0.0 0.0 4.79 F
592 599 0.179100 CAAGTGAGCCGATCCGACAT 60.179 55.000 0.00 0.0 0.0 3.06 F
595 602 0.318275 GTGAGCCGATCCGACATCTC 60.318 60.000 0.00 0.0 0.0 2.75 F
914 971 0.811616 CGGCTTCTTCTCCAATCCCG 60.812 60.000 0.00 0.0 0.0 5.14 F
929 986 0.958382 TCCCGTTCATTGCCTTTCCG 60.958 55.000 0.00 0.0 0.0 4.30 F
2184 4542 1.000274 CATACATCGCGGACATCCTGA 60.000 52.381 6.13 0.0 0.0 3.86 F
2311 4669 1.146774 TGTTTGCCATCTTTCCTCCCA 59.853 47.619 0.00 0.0 0.0 4.37 F
4036 7073 1.070134 GTGCCAGGTCAACAGTCTGTA 59.930 52.381 5.77 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2583 4941 0.480690 TGCAAACAGGGGAAGGCTAA 59.519 50.000 0.00 0.00 0.00 3.09 R
2584 4942 0.704076 ATGCAAACAGGGGAAGGCTA 59.296 50.000 0.00 0.00 0.00 3.93 R
2585 4943 0.901580 CATGCAAACAGGGGAAGGCT 60.902 55.000 0.00 0.00 0.00 4.58 R
2753 5114 4.580580 GGGAAAATGTTAGGTAGGAGCATG 59.419 45.833 0.00 0.00 0.00 4.06 R
2872 5555 5.182001 AGCAAGCTGTTGGAAAACTACATAG 59.818 40.000 0.00 0.00 34.41 2.23 R
3086 5782 1.614051 CCAGCCACTGATTGTTGGCTA 60.614 52.381 14.56 0.00 45.00 3.93 R
4073 7115 3.066621 TCACAACTTTGGCTAAGCACTTG 59.933 43.478 8.62 8.42 37.37 3.16 R
4917 7991 0.700564 TGGGAGGAAGAAATGCAGCT 59.299 50.000 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 1.798813 CGAGCTTGGACTTGTTGTACC 59.201 52.381 0.00 0.00 0.00 3.34
426 427 1.519455 CACTCGAGGTTCGGCATCC 60.519 63.158 18.41 0.00 40.88 3.51
450 451 4.798682 CCTACCGGGTGGGGAGCT 62.799 72.222 21.14 0.00 46.62 4.09
590 597 0.103208 ATCAAGTGAGCCGATCCGAC 59.897 55.000 0.00 0.00 0.00 4.79
591 598 1.215382 CAAGTGAGCCGATCCGACA 59.785 57.895 0.00 0.00 0.00 4.35
592 599 0.179100 CAAGTGAGCCGATCCGACAT 60.179 55.000 0.00 0.00 0.00 3.06
594 601 0.753479 AGTGAGCCGATCCGACATCT 60.753 55.000 0.00 0.00 0.00 2.90
595 602 0.318275 GTGAGCCGATCCGACATCTC 60.318 60.000 0.00 0.00 0.00 2.75
596 603 1.081774 GAGCCGATCCGACATCTCG 60.082 63.158 0.00 0.00 39.83 4.04
653 686 1.219664 CGCAGGTATTGGAACCGGA 59.780 57.895 9.46 0.00 44.77 5.14
663 696 1.477553 TGGAACCGGATAGCGTACTT 58.522 50.000 9.46 0.00 0.00 2.24
702 735 1.067071 GCTTGGTTAGCGTACTCCTGT 60.067 52.381 0.00 0.00 40.71 4.00
703 736 2.607187 CTTGGTTAGCGTACTCCTGTG 58.393 52.381 0.00 0.00 0.00 3.66
711 744 1.836383 CGTACTCCTGTGAATACGCC 58.164 55.000 0.00 0.00 34.62 5.68
738 771 2.432300 CGGGTAGCGGGGAACAGAT 61.432 63.158 0.00 0.00 0.00 2.90
789 830 2.029844 GAAGAGGCACGCACCAGTC 61.030 63.158 0.00 0.00 0.00 3.51
792 833 4.320456 AGGCACGCACCAGTCCAG 62.320 66.667 0.00 0.00 0.00 3.86
914 971 0.811616 CGGCTTCTTCTCCAATCCCG 60.812 60.000 0.00 0.00 0.00 5.14
929 986 0.958382 TCCCGTTCATTGCCTTTCCG 60.958 55.000 0.00 0.00 0.00 4.30
930 987 1.241315 CCCGTTCATTGCCTTTCCGT 61.241 55.000 0.00 0.00 0.00 4.69
932 989 1.401018 CCGTTCATTGCCTTTCCGTTC 60.401 52.381 0.00 0.00 0.00 3.95
1178 1249 2.094597 TCATGGGTAACGTTACTCACCG 60.095 50.000 36.50 29.60 46.06 4.94
1262 1352 2.043939 TCCATGTCTGTACTACTGGGGT 59.956 50.000 0.00 0.00 0.00 4.95
1404 1498 7.393234 TGGTTGTTCATTCTTTAGATGGTTAGG 59.607 37.037 0.00 0.00 0.00 2.69
1567 1662 6.581542 CCGTCTACTGTTAGTTTGTTACTCTG 59.418 42.308 0.00 0.00 38.33 3.35
1681 1778 3.057245 GGAGATGCCTTTGTTTCCAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
1682 1779 3.823304 GAGATGCCTTTGTTTCCAGTTCT 59.177 43.478 0.00 0.00 0.00 3.01
1741 1842 1.492993 GCCTTGGAGAGTTGGGGTCT 61.493 60.000 0.00 0.00 0.00 3.85
1761 1862 7.447545 GGGGTCTTAAGTTTTTGTAGTGATTCT 59.552 37.037 1.63 0.00 0.00 2.40
1762 1863 8.290325 GGGTCTTAAGTTTTTGTAGTGATTCTG 58.710 37.037 1.63 0.00 0.00 3.02
1810 1911 7.461182 TCAACCCAATTAAATTCCAGTACTG 57.539 36.000 16.34 16.34 0.00 2.74
1834 4166 8.684386 TGAACACATATTACCTTTCAAAGACA 57.316 30.769 0.00 0.00 0.00 3.41
1859 4216 8.887717 CATTAAGGTTGAGAGTATTCAGAAAGG 58.112 37.037 0.00 0.00 0.00 3.11
1873 4230 6.457159 TTCAGAAAGGGGTTGGATAAAGTA 57.543 37.500 0.00 0.00 0.00 2.24
1963 4321 5.862924 TTCAGTTGTAGCTACAAGCATTC 57.137 39.130 34.07 23.16 45.82 2.67
1978 4336 3.657634 AGCATTCTGTCATAGGCATACG 58.342 45.455 0.00 0.00 0.00 3.06
1980 4338 4.020751 AGCATTCTGTCATAGGCATACGAT 60.021 41.667 0.00 0.00 0.00 3.73
2024 4382 3.742369 GGTCGACGTTTATTGAAGGTTGA 59.258 43.478 9.92 1.10 41.75 3.18
2126 4484 1.519246 CTGCGCCTCTCTGAATCCA 59.481 57.895 4.18 0.00 0.00 3.41
2151 4509 1.302366 TGTCAGTGCTGCAAGAAGTG 58.698 50.000 2.77 0.00 44.88 3.16
2176 4534 2.035321 TGCAATAGACATACATCGCGGA 59.965 45.455 6.13 0.00 0.00 5.54
2184 4542 1.000274 CATACATCGCGGACATCCTGA 60.000 52.381 6.13 0.00 0.00 3.86
2235 4593 3.010584 ACTGATGTTGTGCCCTTTCCTAT 59.989 43.478 0.00 0.00 0.00 2.57
2256 4614 9.768215 TCCTATTCCTTATTTTCAACCAATCTT 57.232 29.630 0.00 0.00 0.00 2.40
2310 4668 1.923356 TGTTTGCCATCTTTCCTCCC 58.077 50.000 0.00 0.00 0.00 4.30
2311 4669 1.146774 TGTTTGCCATCTTTCCTCCCA 59.853 47.619 0.00 0.00 0.00 4.37
2868 5551 8.418662 TGAGTACTAGTAACATTTCACTTGTGT 58.581 33.333 3.61 0.00 33.71 3.72
3020 5713 5.308014 TCAGTGATATTGATACCATGCACC 58.692 41.667 0.00 0.00 0.00 5.01
3086 5782 8.877864 TTGACATTTGGTATCCTTAAGACAAT 57.122 30.769 3.36 0.00 0.00 2.71
3126 5829 5.123661 GCTGGATACTCCGTCCTATACTAAC 59.876 48.000 0.00 0.00 40.17 2.34
3127 5830 6.445451 TGGATACTCCGTCCTATACTAACT 57.555 41.667 0.00 0.00 40.17 2.24
3128 5831 6.845908 TGGATACTCCGTCCTATACTAACTT 58.154 40.000 0.00 0.00 40.17 2.66
3129 5832 7.977818 TGGATACTCCGTCCTATACTAACTTA 58.022 38.462 0.00 0.00 40.17 2.24
3130 5833 8.099537 TGGATACTCCGTCCTATACTAACTTAG 58.900 40.741 0.00 0.00 40.17 2.18
3131 5834 8.317679 GGATACTCCGTCCTATACTAACTTAGA 58.682 40.741 2.65 0.00 32.85 2.10
3132 5835 9.717942 GATACTCCGTCCTATACTAACTTAGAA 57.282 37.037 2.65 0.00 0.00 2.10
3909 6946 1.738099 GTAGTCAGTGTGCCAGGCG 60.738 63.158 7.03 0.00 0.00 5.52
3918 6955 2.203337 TGCCAGGCGAGCAGTTTT 60.203 55.556 7.03 0.00 34.69 2.43
4027 7064 1.621814 GTAGTAGGTGTGCCAGGTCAA 59.378 52.381 0.00 0.00 37.19 3.18
4036 7073 1.070134 GTGCCAGGTCAACAGTCTGTA 59.930 52.381 5.77 0.00 0.00 2.74
4038 7075 1.941668 GCCAGGTCAACAGTCTGTAGC 60.942 57.143 5.77 1.17 0.00 3.58
4039 7076 1.338200 CCAGGTCAACAGTCTGTAGCC 60.338 57.143 5.77 8.85 0.00 3.93
4040 7077 1.344438 CAGGTCAACAGTCTGTAGCCA 59.656 52.381 5.77 0.00 0.00 4.75
4041 7078 2.047061 AGGTCAACAGTCTGTAGCCAA 58.953 47.619 5.77 0.00 0.00 4.52
4042 7079 2.438021 AGGTCAACAGTCTGTAGCCAAA 59.562 45.455 5.77 0.00 0.00 3.28
4043 7080 2.808543 GGTCAACAGTCTGTAGCCAAAG 59.191 50.000 5.77 0.00 0.00 2.77
4073 7115 4.019231 ACCTTGTCTACCCCTTGATTCTTC 60.019 45.833 0.00 0.00 0.00 2.87
4112 7154 7.713764 AGTTGTGATTGCTTATTTTGAAACC 57.286 32.000 0.00 0.00 0.00 3.27
4117 7159 9.171877 TGTGATTGCTTATTTTGAAACCTTTTT 57.828 25.926 0.00 0.00 0.00 1.94
4218 7272 2.612972 GCACTCTAGCACCACTAGCAAA 60.613 50.000 0.00 0.00 46.93 3.68
4250 7304 1.167851 TGCTGGTTATGCAGCTCAAC 58.832 50.000 0.00 0.00 44.19 3.18
4265 7322 5.066893 GCAGCTCAACTTGATATTTCATCCA 59.933 40.000 0.00 0.00 0.00 3.41
4311 7368 1.077501 TGGCCCTCAAGCTACATGC 60.078 57.895 0.00 0.00 43.29 4.06
4335 7392 3.893763 TGCGTGGGTTTTGGTGCG 61.894 61.111 0.00 0.00 0.00 5.34
4518 7577 3.993081 GCATGTATGTACTCAGAGATGGC 59.007 47.826 3.79 0.00 37.15 4.40
4539 7600 4.201656 GGCGTGACCTAAATTTTACGTCTC 60.202 45.833 14.98 11.84 33.84 3.36
4665 7739 1.287146 AGCTGCATTTCTTCCTCCCAT 59.713 47.619 1.02 0.00 0.00 4.00
4670 7744 4.355549 TGCATTTCTTCCTCCCATGATTT 58.644 39.130 0.00 0.00 0.00 2.17
4671 7745 4.778958 TGCATTTCTTCCTCCCATGATTTT 59.221 37.500 0.00 0.00 0.00 1.82
4672 7746 5.114081 GCATTTCTTCCTCCCATGATTTTG 58.886 41.667 0.00 0.00 0.00 2.44
4673 7747 4.806640 TTTCTTCCTCCCATGATTTTGC 57.193 40.909 0.00 0.00 0.00 3.68
4674 7748 3.744940 TCTTCCTCCCATGATTTTGCT 57.255 42.857 0.00 0.00 0.00 3.91
4675 7749 3.624777 TCTTCCTCCCATGATTTTGCTC 58.375 45.455 0.00 0.00 0.00 4.26
4676 7750 3.267812 TCTTCCTCCCATGATTTTGCTCT 59.732 43.478 0.00 0.00 0.00 4.09
4677 7751 3.008835 TCCTCCCATGATTTTGCTCTG 57.991 47.619 0.00 0.00 0.00 3.35
4678 7752 1.407979 CCTCCCATGATTTTGCTCTGC 59.592 52.381 0.00 0.00 0.00 4.26
4679 7753 2.376109 CTCCCATGATTTTGCTCTGCT 58.624 47.619 0.00 0.00 0.00 4.24
4680 7754 3.548770 CTCCCATGATTTTGCTCTGCTA 58.451 45.455 0.00 0.00 0.00 3.49
4681 7755 3.949754 CTCCCATGATTTTGCTCTGCTAA 59.050 43.478 0.00 0.00 0.00 3.09
4682 7756 4.343231 TCCCATGATTTTGCTCTGCTAAA 58.657 39.130 0.00 2.24 37.61 1.85
4683 7757 4.957954 TCCCATGATTTTGCTCTGCTAAAT 59.042 37.500 10.60 10.60 43.85 1.40
4684 7758 5.047847 CCCATGATTTTGCTCTGCTAAATG 58.952 41.667 14.37 4.78 42.03 2.32
4685 7759 4.506654 CCATGATTTTGCTCTGCTAAATGC 59.493 41.667 14.37 8.40 42.03 3.56
4696 7770 2.380102 GCTAAATGCATCGCACTGAG 57.620 50.000 0.00 0.00 43.04 3.35
4697 7771 1.667724 GCTAAATGCATCGCACTGAGT 59.332 47.619 0.00 0.00 43.04 3.41
4698 7772 2.866156 GCTAAATGCATCGCACTGAGTA 59.134 45.455 0.00 0.00 43.04 2.59
4699 7773 3.060003 GCTAAATGCATCGCACTGAGTAG 60.060 47.826 0.00 0.00 43.04 2.57
4700 7774 1.293924 AATGCATCGCACTGAGTAGC 58.706 50.000 0.00 0.00 43.04 3.58
4701 7775 0.463204 ATGCATCGCACTGAGTAGCT 59.537 50.000 0.00 0.00 43.04 3.32
4702 7776 1.102978 TGCATCGCACTGAGTAGCTA 58.897 50.000 0.00 0.00 31.71 3.32
4703 7777 1.683385 TGCATCGCACTGAGTAGCTAT 59.317 47.619 0.00 0.00 31.71 2.97
4704 7778 2.884639 TGCATCGCACTGAGTAGCTATA 59.115 45.455 0.00 0.00 31.71 1.31
4705 7779 3.507622 TGCATCGCACTGAGTAGCTATAT 59.492 43.478 0.00 0.00 31.71 0.86
4706 7780 4.021981 TGCATCGCACTGAGTAGCTATATT 60.022 41.667 0.00 0.00 31.71 1.28
4707 7781 4.325741 GCATCGCACTGAGTAGCTATATTG 59.674 45.833 0.00 0.00 0.00 1.90
4708 7782 5.465051 CATCGCACTGAGTAGCTATATTGT 58.535 41.667 0.00 0.00 0.00 2.71
4709 7783 5.515797 TCGCACTGAGTAGCTATATTGTT 57.484 39.130 0.00 0.00 0.00 2.83
4710 7784 5.902681 TCGCACTGAGTAGCTATATTGTTT 58.097 37.500 0.00 0.00 0.00 2.83
4711 7785 5.977725 TCGCACTGAGTAGCTATATTGTTTC 59.022 40.000 0.00 0.00 0.00 2.78
4712 7786 5.980116 CGCACTGAGTAGCTATATTGTTTCT 59.020 40.000 0.00 0.00 0.00 2.52
4713 7787 6.143118 CGCACTGAGTAGCTATATTGTTTCTC 59.857 42.308 0.00 0.00 0.00 2.87
4714 7788 6.422400 GCACTGAGTAGCTATATTGTTTCTCC 59.578 42.308 0.00 0.00 0.00 3.71
4715 7789 7.492524 CACTGAGTAGCTATATTGTTTCTCCA 58.507 38.462 0.00 0.00 0.00 3.86
4716 7790 7.651304 CACTGAGTAGCTATATTGTTTCTCCAG 59.349 40.741 0.00 0.00 0.00 3.86
4717 7791 7.343316 ACTGAGTAGCTATATTGTTTCTCCAGT 59.657 37.037 0.00 0.00 0.00 4.00
4718 7792 7.717568 TGAGTAGCTATATTGTTTCTCCAGTC 58.282 38.462 0.00 0.00 0.00 3.51
4719 7793 7.561722 TGAGTAGCTATATTGTTTCTCCAGTCT 59.438 37.037 0.00 0.00 0.00 3.24
4720 7794 7.721402 AGTAGCTATATTGTTTCTCCAGTCTG 58.279 38.462 0.00 0.00 0.00 3.51
4721 7795 6.552445 AGCTATATTGTTTCTCCAGTCTGT 57.448 37.500 0.00 0.00 0.00 3.41
4722 7796 7.661536 AGCTATATTGTTTCTCCAGTCTGTA 57.338 36.000 0.00 0.00 0.00 2.74
4723 7797 7.721402 AGCTATATTGTTTCTCCAGTCTGTAG 58.279 38.462 0.00 0.00 0.00 2.74
4724 7798 6.422400 GCTATATTGTTTCTCCAGTCTGTAGC 59.578 42.308 0.00 0.00 0.00 3.58
4725 7799 3.402628 TTGTTTCTCCAGTCTGTAGCC 57.597 47.619 0.00 0.00 0.00 3.93
4726 7800 2.325484 TGTTTCTCCAGTCTGTAGCCA 58.675 47.619 0.00 0.00 0.00 4.75
4727 7801 2.300152 TGTTTCTCCAGTCTGTAGCCAG 59.700 50.000 0.00 0.00 40.25 4.85
4728 7802 2.300437 GTTTCTCCAGTCTGTAGCCAGT 59.700 50.000 0.00 0.00 39.82 4.00
4729 7803 2.310779 TCTCCAGTCTGTAGCCAGTT 57.689 50.000 0.00 0.00 39.82 3.16
4730 7804 2.609747 TCTCCAGTCTGTAGCCAGTTT 58.390 47.619 0.00 0.00 39.82 2.66
4731 7805 2.300152 TCTCCAGTCTGTAGCCAGTTTG 59.700 50.000 0.00 0.00 39.82 2.93
4732 7806 2.300152 CTCCAGTCTGTAGCCAGTTTGA 59.700 50.000 0.00 0.00 39.82 2.69
4733 7807 2.906389 TCCAGTCTGTAGCCAGTTTGAT 59.094 45.455 0.00 0.00 39.82 2.57
4734 7808 3.005554 CCAGTCTGTAGCCAGTTTGATG 58.994 50.000 0.00 0.00 39.82 3.07
4735 7809 3.557898 CCAGTCTGTAGCCAGTTTGATGT 60.558 47.826 0.00 0.00 39.82 3.06
4736 7810 3.681897 CAGTCTGTAGCCAGTTTGATGTC 59.318 47.826 0.00 0.00 39.82 3.06
4737 7811 3.324846 AGTCTGTAGCCAGTTTGATGTCA 59.675 43.478 0.00 0.00 39.82 3.58
4738 7812 4.019860 AGTCTGTAGCCAGTTTGATGTCAT 60.020 41.667 0.00 0.00 39.82 3.06
4739 7813 4.093998 GTCTGTAGCCAGTTTGATGTCATG 59.906 45.833 0.00 0.00 39.82 3.07
4740 7814 3.346315 TGTAGCCAGTTTGATGTCATGG 58.654 45.455 0.00 0.00 0.00 3.66
4744 7818 3.159353 CCAGTTTGATGTCATGGCATG 57.841 47.619 19.48 21.42 0.00 4.06
4745 7819 2.494471 CCAGTTTGATGTCATGGCATGT 59.506 45.455 25.62 8.10 0.00 3.21
4746 7820 3.507786 CAGTTTGATGTCATGGCATGTG 58.492 45.455 25.62 10.49 0.00 3.21
4747 7821 2.494471 AGTTTGATGTCATGGCATGTGG 59.506 45.455 25.62 1.95 0.00 4.17
4748 7822 2.219080 TTGATGTCATGGCATGTGGT 57.781 45.000 25.62 13.12 0.00 4.16
4749 7823 3.362870 TTGATGTCATGGCATGTGGTA 57.637 42.857 25.62 11.75 0.00 3.25
4750 7824 3.581265 TGATGTCATGGCATGTGGTAT 57.419 42.857 25.62 15.47 0.00 2.73
4751 7825 4.703379 TGATGTCATGGCATGTGGTATA 57.297 40.909 25.62 6.59 0.00 1.47
4752 7826 4.388485 TGATGTCATGGCATGTGGTATAC 58.612 43.478 25.62 16.00 0.00 1.47
4753 7827 2.832563 TGTCATGGCATGTGGTATACG 58.167 47.619 25.62 0.00 0.00 3.06
4754 7828 1.531149 GTCATGGCATGTGGTATACGC 59.469 52.381 25.62 4.27 0.00 4.42
4755 7829 1.139853 TCATGGCATGTGGTATACGCA 59.860 47.619 25.62 0.69 44.94 5.24
4767 7841 7.010697 TGTGGTATACGCATTTTGACTTATG 57.989 36.000 0.00 0.00 33.95 1.90
4768 7842 5.907391 GTGGTATACGCATTTTGACTTATGC 59.093 40.000 0.00 0.00 42.82 3.14
4769 7843 5.586643 TGGTATACGCATTTTGACTTATGCA 59.413 36.000 0.00 0.00 45.73 3.96
4770 7844 6.094186 TGGTATACGCATTTTGACTTATGCAA 59.906 34.615 0.00 0.00 45.73 4.08
4771 7845 7.138736 GGTATACGCATTTTGACTTATGCAAT 58.861 34.615 0.00 0.00 45.73 3.56
4772 7846 7.323656 GGTATACGCATTTTGACTTATGCAATC 59.676 37.037 0.00 0.00 45.73 2.67
4773 7847 5.314923 ACGCATTTTGACTTATGCAATCT 57.685 34.783 0.00 0.00 45.73 2.40
4774 7848 5.335127 ACGCATTTTGACTTATGCAATCTC 58.665 37.500 0.00 0.00 45.73 2.75
4775 7849 4.435554 CGCATTTTGACTTATGCAATCTCG 59.564 41.667 0.00 0.00 45.73 4.04
4776 7850 5.335127 GCATTTTGACTTATGCAATCTCGT 58.665 37.500 0.00 0.00 44.99 4.18
4777 7851 6.486248 GCATTTTGACTTATGCAATCTCGTA 58.514 36.000 0.00 0.00 44.99 3.43
4778 7852 6.630443 GCATTTTGACTTATGCAATCTCGTAG 59.370 38.462 0.00 0.00 44.99 3.51
4779 7853 5.718649 TTTGACTTATGCAATCTCGTAGC 57.281 39.130 0.00 0.00 0.00 3.58
4780 7854 4.655762 TGACTTATGCAATCTCGTAGCT 57.344 40.909 0.00 0.00 0.00 3.32
4781 7855 5.767816 TGACTTATGCAATCTCGTAGCTA 57.232 39.130 0.00 0.00 0.00 3.32
4782 7856 5.763088 TGACTTATGCAATCTCGTAGCTAG 58.237 41.667 0.00 0.00 0.00 3.42
4783 7857 4.551388 ACTTATGCAATCTCGTAGCTAGC 58.449 43.478 6.62 6.62 0.00 3.42
4784 7858 4.279671 ACTTATGCAATCTCGTAGCTAGCT 59.720 41.667 23.12 23.12 0.00 3.32
4785 7859 2.498807 TGCAATCTCGTAGCTAGCTG 57.501 50.000 27.68 11.72 0.00 4.24
4786 7860 1.135867 GCAATCTCGTAGCTAGCTGC 58.864 55.000 27.68 24.53 43.29 5.25
4787 7861 1.536922 GCAATCTCGTAGCTAGCTGCA 60.537 52.381 28.85 16.50 45.94 4.41
4788 7862 2.865670 GCAATCTCGTAGCTAGCTGCAT 60.866 50.000 28.85 14.61 45.94 3.96
4789 7863 3.388308 CAATCTCGTAGCTAGCTGCATT 58.612 45.455 28.85 19.02 45.94 3.56
4790 7864 3.742433 ATCTCGTAGCTAGCTGCATTT 57.258 42.857 28.85 10.46 45.94 2.32
4791 7865 3.085443 TCTCGTAGCTAGCTGCATTTC 57.915 47.619 28.85 11.29 45.94 2.17
4792 7866 2.690497 TCTCGTAGCTAGCTGCATTTCT 59.310 45.455 28.85 3.92 45.94 2.52
4793 7867 3.131223 TCTCGTAGCTAGCTGCATTTCTT 59.869 43.478 28.85 3.19 45.94 2.52
4794 7868 3.448686 TCGTAGCTAGCTGCATTTCTTC 58.551 45.455 28.85 7.77 45.94 2.87
4795 7869 2.541762 CGTAGCTAGCTGCATTTCTTCC 59.458 50.000 28.85 4.30 45.94 3.46
4796 7870 3.739519 CGTAGCTAGCTGCATTTCTTCCT 60.740 47.826 28.85 1.72 45.94 3.36
4797 7871 2.916640 AGCTAGCTGCATTTCTTCCTC 58.083 47.619 18.57 0.00 45.94 3.71
4798 7872 1.946081 GCTAGCTGCATTTCTTCCTCC 59.054 52.381 7.70 0.00 42.31 4.30
4799 7873 2.570135 CTAGCTGCATTTCTTCCTCCC 58.430 52.381 1.02 0.00 0.00 4.30
4800 7874 0.700564 AGCTGCATTTCTTCCTCCCA 59.299 50.000 1.02 0.00 0.00 4.37
4801 7875 1.287146 AGCTGCATTTCTTCCTCCCAT 59.713 47.619 1.02 0.00 0.00 4.00
4802 7876 1.407979 GCTGCATTTCTTCCTCCCATG 59.592 52.381 0.00 0.00 0.00 3.66
4803 7877 2.947243 GCTGCATTTCTTCCTCCCATGA 60.947 50.000 0.00 0.00 0.00 3.07
4804 7878 3.563223 CTGCATTTCTTCCTCCCATGAT 58.437 45.455 0.00 0.00 0.00 2.45
4805 7879 3.958798 CTGCATTTCTTCCTCCCATGATT 59.041 43.478 0.00 0.00 0.00 2.57
4806 7880 4.355549 TGCATTTCTTCCTCCCATGATTT 58.644 39.130 0.00 0.00 0.00 2.17
4807 7881 4.778958 TGCATTTCTTCCTCCCATGATTTT 59.221 37.500 0.00 0.00 0.00 1.82
4808 7882 5.114081 GCATTTCTTCCTCCCATGATTTTG 58.886 41.667 0.00 0.00 0.00 2.44
4809 7883 4.806640 TTTCTTCCTCCCATGATTTTGC 57.193 40.909 0.00 0.00 0.00 3.68
4810 7884 3.744940 TCTTCCTCCCATGATTTTGCT 57.255 42.857 0.00 0.00 0.00 3.91
4811 7885 3.624777 TCTTCCTCCCATGATTTTGCTC 58.375 45.455 0.00 0.00 0.00 4.26
4812 7886 3.267812 TCTTCCTCCCATGATTTTGCTCT 59.732 43.478 0.00 0.00 0.00 4.09
4813 7887 3.008835 TCCTCCCATGATTTTGCTCTG 57.991 47.619 0.00 0.00 0.00 3.35
4814 7888 1.407979 CCTCCCATGATTTTGCTCTGC 59.592 52.381 0.00 0.00 0.00 4.26
4815 7889 2.376109 CTCCCATGATTTTGCTCTGCT 58.624 47.619 0.00 0.00 0.00 4.24
4816 7890 3.548770 CTCCCATGATTTTGCTCTGCTA 58.451 45.455 0.00 0.00 0.00 3.49
4817 7891 3.949754 CTCCCATGATTTTGCTCTGCTAA 59.050 43.478 0.00 0.00 0.00 3.09
4818 7892 4.343231 TCCCATGATTTTGCTCTGCTAAA 58.657 39.130 0.00 2.24 37.61 1.85
4819 7893 4.957954 TCCCATGATTTTGCTCTGCTAAAT 59.042 37.500 10.60 10.60 43.85 1.40
4820 7894 5.047847 CCCATGATTTTGCTCTGCTAAATG 58.952 41.667 14.37 4.78 42.03 2.32
4821 7895 4.506654 CCATGATTTTGCTCTGCTAAATGC 59.493 41.667 14.37 8.40 42.03 3.56
4832 7906 2.380102 GCTAAATGCATCGCACTGAG 57.620 50.000 0.00 0.00 43.04 3.35
4833 7907 1.667724 GCTAAATGCATCGCACTGAGT 59.332 47.619 0.00 0.00 43.04 3.41
4834 7908 2.866156 GCTAAATGCATCGCACTGAGTA 59.134 45.455 0.00 0.00 43.04 2.59
4835 7909 3.060003 GCTAAATGCATCGCACTGAGTAG 60.060 47.826 0.00 0.00 43.04 2.57
4836 7910 1.293924 AATGCATCGCACTGAGTAGC 58.706 50.000 0.00 0.00 43.04 3.58
4837 7911 0.463204 ATGCATCGCACTGAGTAGCT 59.537 50.000 0.00 0.00 43.04 3.32
4838 7912 1.102978 TGCATCGCACTGAGTAGCTA 58.897 50.000 0.00 0.00 31.71 3.32
4839 7913 1.683385 TGCATCGCACTGAGTAGCTAT 59.317 47.619 0.00 0.00 31.71 2.97
4840 7914 2.884639 TGCATCGCACTGAGTAGCTATA 59.115 45.455 0.00 0.00 31.71 1.31
4841 7915 3.507622 TGCATCGCACTGAGTAGCTATAT 59.492 43.478 0.00 0.00 31.71 0.86
4842 7916 4.021981 TGCATCGCACTGAGTAGCTATATT 60.022 41.667 0.00 0.00 31.71 1.28
4843 7917 4.325741 GCATCGCACTGAGTAGCTATATTG 59.674 45.833 0.00 0.00 0.00 1.90
4844 7918 5.465051 CATCGCACTGAGTAGCTATATTGT 58.535 41.667 0.00 0.00 0.00 2.71
4845 7919 5.515797 TCGCACTGAGTAGCTATATTGTT 57.484 39.130 0.00 0.00 0.00 2.83
4846 7920 5.902681 TCGCACTGAGTAGCTATATTGTTT 58.097 37.500 0.00 0.00 0.00 2.83
4847 7921 5.977725 TCGCACTGAGTAGCTATATTGTTTC 59.022 40.000 0.00 0.00 0.00 2.78
4848 7922 5.980116 CGCACTGAGTAGCTATATTGTTTCT 59.020 40.000 0.00 0.00 0.00 2.52
4849 7923 6.143118 CGCACTGAGTAGCTATATTGTTTCTC 59.857 42.308 0.00 0.00 0.00 2.87
4850 7924 6.422400 GCACTGAGTAGCTATATTGTTTCTCC 59.578 42.308 0.00 0.00 0.00 3.71
4851 7925 7.492524 CACTGAGTAGCTATATTGTTTCTCCA 58.507 38.462 0.00 0.00 0.00 3.86
4852 7926 7.651304 CACTGAGTAGCTATATTGTTTCTCCAG 59.349 40.741 0.00 0.00 0.00 3.86
4853 7927 7.343316 ACTGAGTAGCTATATTGTTTCTCCAGT 59.657 37.037 0.00 0.00 0.00 4.00
4854 7928 7.717568 TGAGTAGCTATATTGTTTCTCCAGTC 58.282 38.462 0.00 0.00 0.00 3.51
4855 7929 7.561722 TGAGTAGCTATATTGTTTCTCCAGTCT 59.438 37.037 0.00 0.00 0.00 3.24
4856 7930 7.721402 AGTAGCTATATTGTTTCTCCAGTCTG 58.279 38.462 0.00 0.00 0.00 3.51
4857 7931 6.552445 AGCTATATTGTTTCTCCAGTCTGT 57.448 37.500 0.00 0.00 0.00 3.41
4858 7932 7.661536 AGCTATATTGTTTCTCCAGTCTGTA 57.338 36.000 0.00 0.00 0.00 2.74
4859 7933 7.721402 AGCTATATTGTTTCTCCAGTCTGTAG 58.279 38.462 0.00 0.00 0.00 2.74
4860 7934 6.422400 GCTATATTGTTTCTCCAGTCTGTAGC 59.578 42.308 0.00 0.00 0.00 3.58
4861 7935 3.402628 TTGTTTCTCCAGTCTGTAGCC 57.597 47.619 0.00 0.00 0.00 3.93
4862 7936 2.325484 TGTTTCTCCAGTCTGTAGCCA 58.675 47.619 0.00 0.00 0.00 4.75
4863 7937 2.300152 TGTTTCTCCAGTCTGTAGCCAG 59.700 50.000 0.00 0.00 40.25 4.85
4864 7938 2.300437 GTTTCTCCAGTCTGTAGCCAGT 59.700 50.000 0.00 0.00 39.82 4.00
4865 7939 2.310779 TCTCCAGTCTGTAGCCAGTT 57.689 50.000 0.00 0.00 39.82 3.16
4866 7940 2.609747 TCTCCAGTCTGTAGCCAGTTT 58.390 47.619 0.00 0.00 39.82 2.66
4867 7941 2.300152 TCTCCAGTCTGTAGCCAGTTTG 59.700 50.000 0.00 0.00 39.82 2.93
4868 7942 2.300152 CTCCAGTCTGTAGCCAGTTTGA 59.700 50.000 0.00 0.00 39.82 2.69
4869 7943 2.906389 TCCAGTCTGTAGCCAGTTTGAT 59.094 45.455 0.00 0.00 39.82 2.57
4870 7944 3.005554 CCAGTCTGTAGCCAGTTTGATG 58.994 50.000 0.00 0.00 39.82 3.07
4871 7945 3.557898 CCAGTCTGTAGCCAGTTTGATGT 60.558 47.826 0.00 0.00 39.82 3.06
4872 7946 3.681897 CAGTCTGTAGCCAGTTTGATGTC 59.318 47.826 0.00 0.00 39.82 3.06
4873 7947 3.324846 AGTCTGTAGCCAGTTTGATGTCA 59.675 43.478 0.00 0.00 39.82 3.58
4874 7948 4.019860 AGTCTGTAGCCAGTTTGATGTCAT 60.020 41.667 0.00 0.00 39.82 3.06
4875 7949 4.093998 GTCTGTAGCCAGTTTGATGTCATG 59.906 45.833 0.00 0.00 39.82 3.07
4876 7950 3.346315 TGTAGCCAGTTTGATGTCATGG 58.654 45.455 0.00 0.00 0.00 3.66
4880 7954 3.159353 CCAGTTTGATGTCATGGCATG 57.841 47.619 19.48 21.42 0.00 4.06
4881 7955 2.494471 CCAGTTTGATGTCATGGCATGT 59.506 45.455 25.62 8.10 0.00 3.21
4882 7956 3.507786 CAGTTTGATGTCATGGCATGTG 58.492 45.455 25.62 10.49 0.00 3.21
4883 7957 2.494471 AGTTTGATGTCATGGCATGTGG 59.506 45.455 25.62 1.95 0.00 4.17
4884 7958 2.219080 TTGATGTCATGGCATGTGGT 57.781 45.000 25.62 13.12 0.00 4.16
4885 7959 3.362870 TTGATGTCATGGCATGTGGTA 57.637 42.857 25.62 11.75 0.00 3.25
4886 7960 3.581265 TGATGTCATGGCATGTGGTAT 57.419 42.857 25.62 15.47 0.00 2.73
4887 7961 4.703379 TGATGTCATGGCATGTGGTATA 57.297 40.909 25.62 6.59 0.00 1.47
4888 7962 4.388485 TGATGTCATGGCATGTGGTATAC 58.612 43.478 25.62 16.00 0.00 1.47
4889 7963 2.832563 TGTCATGGCATGTGGTATACG 58.167 47.619 25.62 0.00 0.00 3.06
4890 7964 1.531149 GTCATGGCATGTGGTATACGC 59.469 52.381 25.62 4.27 0.00 4.42
4891 7965 1.139853 TCATGGCATGTGGTATACGCA 59.860 47.619 25.62 0.69 44.94 5.24
4903 7977 7.010697 TGTGGTATACGCATTTTGACTTATG 57.989 36.000 0.00 0.00 33.95 1.90
4904 7978 5.907391 GTGGTATACGCATTTTGACTTATGC 59.093 40.000 0.00 0.00 42.82 3.14
4905 7979 5.586643 TGGTATACGCATTTTGACTTATGCA 59.413 36.000 0.00 0.00 45.73 3.96
4906 7980 6.094186 TGGTATACGCATTTTGACTTATGCAA 59.906 34.615 0.00 0.00 45.73 4.08
4907 7981 7.138736 GGTATACGCATTTTGACTTATGCAAT 58.861 34.615 0.00 0.00 45.73 3.56
4908 7982 7.323656 GGTATACGCATTTTGACTTATGCAATC 59.676 37.037 0.00 0.00 45.73 2.67
4909 7983 5.314923 ACGCATTTTGACTTATGCAATCT 57.685 34.783 0.00 0.00 45.73 2.40
4910 7984 5.335127 ACGCATTTTGACTTATGCAATCTC 58.665 37.500 0.00 0.00 45.73 2.75
4911 7985 4.435554 CGCATTTTGACTTATGCAATCTCG 59.564 41.667 0.00 0.00 45.73 4.04
4912 7986 5.335127 GCATTTTGACTTATGCAATCTCGT 58.665 37.500 0.00 0.00 44.99 4.18
4913 7987 6.486248 GCATTTTGACTTATGCAATCTCGTA 58.514 36.000 0.00 0.00 44.99 3.43
4914 7988 6.630443 GCATTTTGACTTATGCAATCTCGTAG 59.370 38.462 0.00 0.00 44.99 3.51
4915 7989 5.718649 TTTGACTTATGCAATCTCGTAGC 57.281 39.130 0.00 0.00 0.00 3.58
4916 7990 4.655762 TGACTTATGCAATCTCGTAGCT 57.344 40.909 0.00 0.00 0.00 3.32
4917 7991 5.767816 TGACTTATGCAATCTCGTAGCTA 57.232 39.130 0.00 0.00 0.00 3.32
4918 7992 5.763088 TGACTTATGCAATCTCGTAGCTAG 58.237 41.667 0.00 0.00 0.00 3.42
4919 7993 4.551388 ACTTATGCAATCTCGTAGCTAGC 58.449 43.478 6.62 6.62 0.00 3.42
4920 7994 4.279671 ACTTATGCAATCTCGTAGCTAGCT 59.720 41.667 23.12 23.12 0.00 3.32
4921 7995 2.498807 TGCAATCTCGTAGCTAGCTG 57.501 50.000 27.68 11.72 0.00 4.24
4922 7996 1.135867 GCAATCTCGTAGCTAGCTGC 58.864 55.000 27.68 24.53 43.29 5.25
4923 7997 1.536922 GCAATCTCGTAGCTAGCTGCA 60.537 52.381 28.85 16.50 45.94 4.41
4924 7998 2.865670 GCAATCTCGTAGCTAGCTGCAT 60.866 50.000 28.85 14.61 45.94 3.96
4925 7999 3.388308 CAATCTCGTAGCTAGCTGCATT 58.612 45.455 28.85 19.02 45.94 3.56
4926 8000 3.742433 ATCTCGTAGCTAGCTGCATTT 57.258 42.857 28.85 10.46 45.94 2.32
4927 8001 3.085443 TCTCGTAGCTAGCTGCATTTC 57.915 47.619 28.85 11.29 45.94 2.17
4928 8002 2.690497 TCTCGTAGCTAGCTGCATTTCT 59.310 45.455 28.85 3.92 45.94 2.52
4929 8003 3.131223 TCTCGTAGCTAGCTGCATTTCTT 59.869 43.478 28.85 3.19 45.94 2.52
4930 8004 3.448686 TCGTAGCTAGCTGCATTTCTTC 58.551 45.455 28.85 7.77 45.94 2.87
4931 8005 2.541762 CGTAGCTAGCTGCATTTCTTCC 59.458 50.000 28.85 4.30 45.94 3.46
4932 8006 3.739519 CGTAGCTAGCTGCATTTCTTCCT 60.740 47.826 28.85 1.72 45.94 3.36
4933 8007 2.916640 AGCTAGCTGCATTTCTTCCTC 58.083 47.619 18.57 0.00 45.94 3.71
4934 8008 1.946081 GCTAGCTGCATTTCTTCCTCC 59.054 52.381 7.70 0.00 42.31 4.30
4935 8009 2.570135 CTAGCTGCATTTCTTCCTCCC 58.430 52.381 1.02 0.00 0.00 4.30
4936 8010 0.700564 AGCTGCATTTCTTCCTCCCA 59.299 50.000 1.02 0.00 0.00 4.37
4937 8011 1.287146 AGCTGCATTTCTTCCTCCCAT 59.713 47.619 1.02 0.00 0.00 4.00
4938 8012 1.407979 GCTGCATTTCTTCCTCCCATG 59.592 52.381 0.00 0.00 0.00 3.66
4939 8013 2.947243 GCTGCATTTCTTCCTCCCATGA 60.947 50.000 0.00 0.00 0.00 3.07
4940 8014 3.563223 CTGCATTTCTTCCTCCCATGAT 58.437 45.455 0.00 0.00 0.00 2.45
4941 8015 3.958798 CTGCATTTCTTCCTCCCATGATT 59.041 43.478 0.00 0.00 0.00 2.57
4982 8056 1.271163 ACGACACGATTTTGGGGACAT 60.271 47.619 0.00 0.00 42.32 3.06
5067 8141 2.766263 TCACTAGCAGGGGTGTATCTTG 59.234 50.000 0.00 0.00 35.26 3.02
5087 8161 5.641209 TCTTGTATCTTTGCTTCAGAGAAGC 59.359 40.000 21.38 21.38 43.29 3.86
5162 8236 6.231211 TGGTTTCAGAGAACTCTATTTGACC 58.769 40.000 3.95 8.77 37.98 4.02
5209 8935 7.255070 GCTCATCTCATTTTCTTGGTAATCCTC 60.255 40.741 0.00 0.00 34.23 3.71
5289 9015 3.289407 TCTTTCCACCACATGTTCACA 57.711 42.857 0.00 0.00 0.00 3.58
5290 9016 2.948979 TCTTTCCACCACATGTTCACAC 59.051 45.455 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.055110 ATCATGCGCCACGTTGCA 61.055 55.556 12.54 10.69 46.51 4.08
426 427 3.528370 CACCCGGTAGGCGGAGAG 61.528 72.222 0.00 0.00 40.58 3.20
450 451 3.702048 CCCTCCAACTCCGGCGAA 61.702 66.667 9.30 0.00 0.00 4.70
544 551 4.499183 GATCCACCAAGAGAGTACAACAG 58.501 47.826 0.00 0.00 0.00 3.16
590 597 4.227134 CTGGACCGGCCCGAGATG 62.227 72.222 3.71 0.00 34.97 2.90
591 598 4.779733 ACTGGACCGGCCCGAGAT 62.780 66.667 3.71 0.00 34.97 2.75
601 634 0.973496 GAGAGTGGGGAGACTGGACC 60.973 65.000 0.00 0.00 0.00 4.46
610 643 3.537506 TGTGGGGGAGAGTGGGGA 61.538 66.667 0.00 0.00 0.00 4.81
611 644 3.330720 GTGTGGGGGAGAGTGGGG 61.331 72.222 0.00 0.00 0.00 4.96
636 669 2.767505 CTATCCGGTTCCAATACCTGC 58.232 52.381 0.00 0.00 35.97 4.85
685 718 1.913778 TCACAGGAGTACGCTAACCA 58.086 50.000 0.00 0.00 0.00 3.67
718 751 3.072468 TGTTCCCCGCTACCCGAG 61.072 66.667 0.00 0.00 40.02 4.63
733 766 0.671781 GTGAGGCGCACAAGATCTGT 60.672 55.000 16.77 0.00 46.91 3.41
789 830 3.406595 GAAGGGGATCCGGTGCTGG 62.407 68.421 5.45 0.00 38.33 4.85
792 833 4.191015 GGGAAGGGGATCCGGTGC 62.191 72.222 5.45 0.00 40.62 5.01
794 835 0.693430 GTAAGGGAAGGGGATCCGGT 60.693 60.000 5.45 0.00 40.62 5.28
914 971 3.501950 GATGAACGGAAAGGCAATGAAC 58.498 45.455 0.00 0.00 0.00 3.18
1178 1249 7.958088 AGTATTAAGAGATTAGAGTTGGAGGC 58.042 38.462 0.00 0.00 0.00 4.70
1297 1389 4.054780 TGGAGACATATTAAGTCGGCAC 57.945 45.455 0.00 0.00 40.84 5.01
1404 1498 5.992217 ACTATTCAGACAAACAGGTGAAGAC 59.008 40.000 0.00 0.00 32.64 3.01
1543 1638 6.581542 CCAGAGTAACAAACTAACAGTAGACG 59.418 42.308 0.00 0.00 39.07 4.18
1558 1653 2.928801 TTTGAGCAGCCAGAGTAACA 57.071 45.000 0.00 0.00 0.00 2.41
1567 1662 2.611224 CCACCAAAGATTTTGAGCAGCC 60.611 50.000 3.24 0.00 0.00 4.85
1741 1842 8.682710 ACTTGCAGAATCACTACAAAAACTTAA 58.317 29.630 0.00 0.00 32.34 1.85
1761 1862 2.738587 TGACCCCAACTTTACTTGCA 57.261 45.000 0.00 0.00 0.00 4.08
1762 1863 3.153919 TCATGACCCCAACTTTACTTGC 58.846 45.455 0.00 0.00 0.00 4.01
1834 4166 8.049721 CCCTTTCTGAATACTCTCAACCTTAAT 58.950 37.037 0.00 0.00 0.00 1.40
1859 4216 6.884836 AGACAACTTGATACTTTATCCAACCC 59.115 38.462 0.00 0.00 34.26 4.11
1873 4230 3.884037 ACCCCTTTCAGACAACTTGAT 57.116 42.857 0.00 0.00 0.00 2.57
1963 4321 4.243007 TCACATCGTATGCCTATGACAG 57.757 45.455 0.00 0.00 0.00 3.51
1978 4336 6.255020 CCTTGCTATTTTCTGCAAATCACATC 59.745 38.462 0.00 0.00 46.55 3.06
1980 4338 5.010922 ACCTTGCTATTTTCTGCAAATCACA 59.989 36.000 0.00 0.00 46.55 3.58
2126 4484 3.151554 TCTTGCAGCACTGACATGAAAT 58.848 40.909 0.00 0.00 0.00 2.17
2151 4509 5.444613 CCGCGATGTATGTCTATTGCATTAC 60.445 44.000 8.23 0.00 34.11 1.89
2176 4534 5.441718 ACACCAAGTCATTATCAGGATGT 57.558 39.130 0.00 0.00 37.40 3.06
2184 4542 7.394077 TGACATGATCAAACACCAAGTCATTAT 59.606 33.333 0.00 0.00 33.02 1.28
2235 4593 8.950007 AGGTAAGATTGGTTGAAAATAAGGAA 57.050 30.769 0.00 0.00 0.00 3.36
2581 4939 1.967779 GCAAACAGGGGAAGGCTAAAA 59.032 47.619 0.00 0.00 0.00 1.52
2582 4940 1.133325 TGCAAACAGGGGAAGGCTAAA 60.133 47.619 0.00 0.00 0.00 1.85
2583 4941 0.480690 TGCAAACAGGGGAAGGCTAA 59.519 50.000 0.00 0.00 0.00 3.09
2584 4942 0.704076 ATGCAAACAGGGGAAGGCTA 59.296 50.000 0.00 0.00 0.00 3.93
2585 4943 0.901580 CATGCAAACAGGGGAAGGCT 60.902 55.000 0.00 0.00 0.00 4.58
2753 5114 4.580580 GGGAAAATGTTAGGTAGGAGCATG 59.419 45.833 0.00 0.00 0.00 4.06
2868 5551 8.946085 CAAGCTGTTGGAAAACTACATAGATTA 58.054 33.333 0.00 0.00 34.41 1.75
2872 5555 5.182001 AGCAAGCTGTTGGAAAACTACATAG 59.818 40.000 0.00 0.00 34.41 2.23
3086 5782 1.614051 CCAGCCACTGATTGTTGGCTA 60.614 52.381 14.56 0.00 45.00 3.93
3126 5829 7.041098 AGGCAACAACTTAACATGACTTCTAAG 60.041 37.037 0.00 1.25 41.41 2.18
3127 5830 6.770785 AGGCAACAACTTAACATGACTTCTAA 59.229 34.615 0.00 0.00 41.41 2.10
3128 5831 6.204688 CAGGCAACAACTTAACATGACTTCTA 59.795 38.462 0.00 0.00 41.41 2.10
3129 5832 5.009010 CAGGCAACAACTTAACATGACTTCT 59.991 40.000 0.00 0.00 41.41 2.85
3130 5833 5.008613 TCAGGCAACAACTTAACATGACTTC 59.991 40.000 0.00 0.00 41.41 3.01
3131 5834 4.887071 TCAGGCAACAACTTAACATGACTT 59.113 37.500 0.00 0.00 41.41 3.01
3132 5835 4.460263 TCAGGCAACAACTTAACATGACT 58.540 39.130 0.00 0.00 41.41 3.41
3573 6278 8.504005 ACGATTCAAAGTGTCCAAATAAGTAAG 58.496 33.333 0.00 0.00 0.00 2.34
3918 6955 7.199167 TCTCATATCAGAGAATTTGGGACAA 57.801 36.000 0.00 0.00 42.35 3.18
3957 6994 4.384056 ACAGACAGACATATAGCATTGGC 58.616 43.478 0.00 0.00 41.61 4.52
4027 7064 4.957684 AGTAACTTTGGCTACAGACTGT 57.042 40.909 13.68 13.68 0.00 3.55
4038 7075 5.936372 GGGTAGACAAGGTAAGTAACTTTGG 59.064 44.000 5.22 0.00 46.58 3.28
4040 7077 5.848369 AGGGGTAGACAAGGTAAGTAACTTT 59.152 40.000 0.00 0.00 0.00 2.66
4041 7078 5.409712 AGGGGTAGACAAGGTAAGTAACTT 58.590 41.667 0.00 0.00 0.00 2.66
4042 7079 5.020941 AGGGGTAGACAAGGTAAGTAACT 57.979 43.478 0.00 0.00 0.00 2.24
4043 7080 5.246883 TCAAGGGGTAGACAAGGTAAGTAAC 59.753 44.000 0.00 0.00 0.00 2.50
4073 7115 3.066621 TCACAACTTTGGCTAAGCACTTG 59.933 43.478 8.62 8.42 37.37 3.16
4117 7159 5.596836 AGCTGAATCAAAGGTGACAAAAA 57.403 34.783 0.00 0.00 36.31 1.94
4118 7160 6.899393 ATAGCTGAATCAAAGGTGACAAAA 57.101 33.333 0.00 0.00 36.31 2.44
4218 7272 5.450965 GCATAACCAGCAACAGCATAAGAAT 60.451 40.000 0.00 0.00 0.00 2.40
4233 7287 3.076621 TCAAGTTGAGCTGCATAACCAG 58.923 45.455 0.08 8.06 35.93 4.00
4265 7322 8.088463 TGCAAGGAAAATACCAATTCCATTAT 57.912 30.769 7.25 0.00 46.14 1.28
4311 7368 2.265182 AAAACCCACGCACCCGATG 61.265 57.895 0.00 0.00 38.29 3.84
4335 7392 2.370281 TCTCAATCGCCACAGAGAAC 57.630 50.000 0.00 0.00 34.45 3.01
4518 7577 4.489841 GCGAGACGTAAAATTTAGGTCACG 60.490 45.833 32.63 32.63 43.62 4.35
4677 7751 1.667724 ACTCAGTGCGATGCATTTAGC 59.332 47.619 0.00 8.22 41.91 3.09
4678 7752 3.060003 GCTACTCAGTGCGATGCATTTAG 60.060 47.826 0.00 0.00 41.91 1.85
4679 7753 2.866156 GCTACTCAGTGCGATGCATTTA 59.134 45.455 0.00 0.00 41.91 1.40
4680 7754 1.667724 GCTACTCAGTGCGATGCATTT 59.332 47.619 0.00 0.00 41.91 2.32
4681 7755 1.134580 AGCTACTCAGTGCGATGCATT 60.135 47.619 0.00 0.00 41.91 3.56
4682 7756 0.463204 AGCTACTCAGTGCGATGCAT 59.537 50.000 0.00 0.00 41.91 3.96
4683 7757 1.102978 TAGCTACTCAGTGCGATGCA 58.897 50.000 0.00 0.00 35.60 3.96
4684 7758 2.430546 ATAGCTACTCAGTGCGATGC 57.569 50.000 0.00 0.00 0.00 3.91
4685 7759 5.465051 ACAATATAGCTACTCAGTGCGATG 58.535 41.667 0.00 0.00 0.00 3.84
4686 7760 5.713792 ACAATATAGCTACTCAGTGCGAT 57.286 39.130 0.00 0.00 0.00 4.58
4687 7761 5.515797 AACAATATAGCTACTCAGTGCGA 57.484 39.130 0.00 0.00 0.00 5.10
4688 7762 5.980116 AGAAACAATATAGCTACTCAGTGCG 59.020 40.000 0.00 0.00 0.00 5.34
4689 7763 6.422400 GGAGAAACAATATAGCTACTCAGTGC 59.578 42.308 0.00 0.00 0.00 4.40
4690 7764 7.492524 TGGAGAAACAATATAGCTACTCAGTG 58.507 38.462 0.00 0.00 0.00 3.66
4691 7765 7.343316 ACTGGAGAAACAATATAGCTACTCAGT 59.657 37.037 0.00 0.36 0.00 3.41
4692 7766 7.721402 ACTGGAGAAACAATATAGCTACTCAG 58.279 38.462 0.00 0.00 0.00 3.35
4693 7767 7.561722 AGACTGGAGAAACAATATAGCTACTCA 59.438 37.037 0.00 0.00 0.00 3.41
4694 7768 7.865385 CAGACTGGAGAAACAATATAGCTACTC 59.135 40.741 0.00 0.00 0.00 2.59
4695 7769 7.343316 ACAGACTGGAGAAACAATATAGCTACT 59.657 37.037 7.51 0.00 0.00 2.57
4696 7770 7.493367 ACAGACTGGAGAAACAATATAGCTAC 58.507 38.462 7.51 0.00 0.00 3.58
4697 7771 7.661536 ACAGACTGGAGAAACAATATAGCTA 57.338 36.000 7.51 0.00 0.00 3.32
4698 7772 6.552445 ACAGACTGGAGAAACAATATAGCT 57.448 37.500 7.51 0.00 0.00 3.32
4699 7773 6.422400 GCTACAGACTGGAGAAACAATATAGC 59.578 42.308 19.49 8.04 26.39 2.97
4700 7774 6.926272 GGCTACAGACTGGAGAAACAATATAG 59.074 42.308 19.49 1.79 26.39 1.31
4701 7775 6.382859 TGGCTACAGACTGGAGAAACAATATA 59.617 38.462 19.49 0.00 26.39 0.86
4702 7776 5.189736 TGGCTACAGACTGGAGAAACAATAT 59.810 40.000 19.49 0.00 26.39 1.28
4703 7777 4.530553 TGGCTACAGACTGGAGAAACAATA 59.469 41.667 19.49 0.00 26.39 1.90
4704 7778 3.327757 TGGCTACAGACTGGAGAAACAAT 59.672 43.478 19.49 0.00 26.39 2.71
4705 7779 2.703536 TGGCTACAGACTGGAGAAACAA 59.296 45.455 19.49 0.00 26.39 2.83
4706 7780 2.325484 TGGCTACAGACTGGAGAAACA 58.675 47.619 19.49 10.57 26.39 2.83
4718 7792 6.215041 GCCATGACATCAAACTGGCTACAG 62.215 50.000 14.92 0.00 46.97 2.74
4719 7793 3.346315 CCATGACATCAAACTGGCTACA 58.654 45.455 0.00 0.00 0.00 2.74
4720 7794 2.098117 GCCATGACATCAAACTGGCTAC 59.902 50.000 14.92 0.00 46.97 3.58
4721 7795 2.368439 GCCATGACATCAAACTGGCTA 58.632 47.619 14.92 0.00 46.97 3.93
4722 7796 1.180029 GCCATGACATCAAACTGGCT 58.820 50.000 14.92 0.00 46.97 4.75
4723 7797 3.727419 GCCATGACATCAAACTGGC 57.273 52.632 8.77 8.77 44.91 4.85
4724 7798 2.494471 ACATGCCATGACATCAAACTGG 59.506 45.455 12.53 0.00 0.00 4.00
4725 7799 3.507786 CACATGCCATGACATCAAACTG 58.492 45.455 12.53 0.00 0.00 3.16
4726 7800 2.494471 CCACATGCCATGACATCAAACT 59.506 45.455 12.53 0.00 0.00 2.66
4727 7801 2.231964 ACCACATGCCATGACATCAAAC 59.768 45.455 12.53 0.00 0.00 2.93
4728 7802 2.527497 ACCACATGCCATGACATCAAA 58.473 42.857 12.53 0.00 0.00 2.69
4729 7803 2.219080 ACCACATGCCATGACATCAA 57.781 45.000 12.53 0.00 0.00 2.57
4730 7804 3.581265 ATACCACATGCCATGACATCA 57.419 42.857 12.53 0.00 0.00 3.07
4731 7805 3.433274 CGTATACCACATGCCATGACATC 59.567 47.826 12.53 0.00 0.00 3.06
4732 7806 3.402110 CGTATACCACATGCCATGACAT 58.598 45.455 12.53 0.00 0.00 3.06
4733 7807 2.832563 CGTATACCACATGCCATGACA 58.167 47.619 12.53 0.00 0.00 3.58
4734 7808 1.531149 GCGTATACCACATGCCATGAC 59.469 52.381 12.53 0.00 0.00 3.06
4735 7809 1.139853 TGCGTATACCACATGCCATGA 59.860 47.619 12.53 0.00 0.00 3.07
4736 7810 1.592064 TGCGTATACCACATGCCATG 58.408 50.000 2.40 2.40 0.00 3.66
4737 7811 2.566833 ATGCGTATACCACATGCCAT 57.433 45.000 5.47 0.00 0.00 4.40
4738 7812 2.340210 AATGCGTATACCACATGCCA 57.660 45.000 6.77 0.00 0.00 4.92
4739 7813 3.066064 TCAAAATGCGTATACCACATGCC 59.934 43.478 6.77 0.00 0.00 4.40
4740 7814 4.035017 GTCAAAATGCGTATACCACATGC 58.965 43.478 6.77 0.65 0.00 4.06
4741 7815 5.484173 AGTCAAAATGCGTATACCACATG 57.516 39.130 6.77 0.00 0.00 3.21
4742 7816 7.639039 CATAAGTCAAAATGCGTATACCACAT 58.361 34.615 0.00 0.00 0.00 3.21
4743 7817 6.457663 GCATAAGTCAAAATGCGTATACCACA 60.458 38.462 0.00 0.00 39.15 4.17
4744 7818 5.907391 GCATAAGTCAAAATGCGTATACCAC 59.093 40.000 0.00 0.00 39.15 4.16
4745 7819 6.055231 GCATAAGTCAAAATGCGTATACCA 57.945 37.500 0.00 0.00 39.15 3.25
4753 7827 5.335127 ACGAGATTGCATAAGTCAAAATGC 58.665 37.500 0.00 0.44 46.92 3.56
4754 7828 6.630443 GCTACGAGATTGCATAAGTCAAAATG 59.370 38.462 0.00 0.00 0.00 2.32
4755 7829 6.540189 AGCTACGAGATTGCATAAGTCAAAAT 59.460 34.615 0.00 0.00 0.00 1.82
4756 7830 5.874810 AGCTACGAGATTGCATAAGTCAAAA 59.125 36.000 0.00 0.00 0.00 2.44
4757 7831 5.419542 AGCTACGAGATTGCATAAGTCAAA 58.580 37.500 0.00 0.00 0.00 2.69
4758 7832 5.011090 AGCTACGAGATTGCATAAGTCAA 57.989 39.130 0.00 0.00 0.00 3.18
4759 7833 4.655762 AGCTACGAGATTGCATAAGTCA 57.344 40.909 0.00 0.00 0.00 3.41
4760 7834 4.619336 GCTAGCTACGAGATTGCATAAGTC 59.381 45.833 7.70 0.00 32.85 3.01
4761 7835 4.279671 AGCTAGCTACGAGATTGCATAAGT 59.720 41.667 17.69 0.00 34.94 2.24
4762 7836 4.620609 CAGCTAGCTACGAGATTGCATAAG 59.379 45.833 18.86 0.00 34.94 1.73
4763 7837 4.550422 CAGCTAGCTACGAGATTGCATAA 58.450 43.478 18.86 0.00 34.94 1.90
4764 7838 3.612717 GCAGCTAGCTACGAGATTGCATA 60.613 47.826 18.86 0.00 34.94 3.14
4765 7839 2.865670 GCAGCTAGCTACGAGATTGCAT 60.866 50.000 18.86 0.00 34.94 3.96
4766 7840 1.536922 GCAGCTAGCTACGAGATTGCA 60.537 52.381 18.86 0.00 34.94 4.08
4767 7841 1.135867 GCAGCTAGCTACGAGATTGC 58.864 55.000 18.86 11.31 41.15 3.56
4768 7842 2.498807 TGCAGCTAGCTACGAGATTG 57.501 50.000 18.86 4.31 45.94 2.67
4769 7843 3.742433 AATGCAGCTAGCTACGAGATT 57.258 42.857 18.86 5.06 45.94 2.40
4770 7844 3.320541 AGAAATGCAGCTAGCTACGAGAT 59.679 43.478 18.86 2.18 45.94 2.75
4771 7845 2.690497 AGAAATGCAGCTAGCTACGAGA 59.310 45.455 18.86 0.00 45.94 4.04
4772 7846 3.090952 AGAAATGCAGCTAGCTACGAG 57.909 47.619 18.86 6.14 45.94 4.18
4773 7847 3.448686 GAAGAAATGCAGCTAGCTACGA 58.551 45.455 18.86 4.32 45.94 3.43
4774 7848 2.541762 GGAAGAAATGCAGCTAGCTACG 59.458 50.000 18.86 7.37 45.94 3.51
4775 7849 3.802866 AGGAAGAAATGCAGCTAGCTAC 58.197 45.455 18.86 13.19 45.94 3.58
4776 7850 3.181461 GGAGGAAGAAATGCAGCTAGCTA 60.181 47.826 18.86 2.62 45.94 3.32
4777 7851 2.421248 GGAGGAAGAAATGCAGCTAGCT 60.421 50.000 12.68 12.68 45.94 3.32
4778 7852 1.946081 GGAGGAAGAAATGCAGCTAGC 59.054 52.381 6.62 6.62 45.96 3.42
4779 7853 2.092753 TGGGAGGAAGAAATGCAGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
4780 7854 1.915489 TGGGAGGAAGAAATGCAGCTA 59.085 47.619 0.00 0.00 0.00 3.32
4781 7855 0.700564 TGGGAGGAAGAAATGCAGCT 59.299 50.000 0.00 0.00 0.00 4.24
4782 7856 1.407979 CATGGGAGGAAGAAATGCAGC 59.592 52.381 0.00 0.00 0.00 5.25
4783 7857 3.008835 TCATGGGAGGAAGAAATGCAG 57.991 47.619 0.00 0.00 0.00 4.41
4784 7858 3.675348 ATCATGGGAGGAAGAAATGCA 57.325 42.857 0.00 0.00 0.00 3.96
4785 7859 5.114081 CAAAATCATGGGAGGAAGAAATGC 58.886 41.667 0.00 0.00 0.00 3.56
4786 7860 5.105064 AGCAAAATCATGGGAGGAAGAAATG 60.105 40.000 0.00 0.00 0.00 2.32
4787 7861 5.028131 AGCAAAATCATGGGAGGAAGAAAT 58.972 37.500 0.00 0.00 0.00 2.17
4788 7862 4.419282 AGCAAAATCATGGGAGGAAGAAA 58.581 39.130 0.00 0.00 0.00 2.52
4789 7863 4.019174 GAGCAAAATCATGGGAGGAAGAA 58.981 43.478 0.00 0.00 0.00 2.52
4790 7864 3.267812 AGAGCAAAATCATGGGAGGAAGA 59.732 43.478 0.00 0.00 0.00 2.87
4791 7865 3.380637 CAGAGCAAAATCATGGGAGGAAG 59.619 47.826 0.00 0.00 0.00 3.46
4792 7866 3.359033 CAGAGCAAAATCATGGGAGGAA 58.641 45.455 0.00 0.00 0.00 3.36
4793 7867 2.947243 GCAGAGCAAAATCATGGGAGGA 60.947 50.000 0.00 0.00 0.00 3.71
4794 7868 1.407979 GCAGAGCAAAATCATGGGAGG 59.592 52.381 0.00 0.00 0.00 4.30
4795 7869 2.376109 AGCAGAGCAAAATCATGGGAG 58.624 47.619 0.00 0.00 0.00 4.30
4796 7870 2.519771 AGCAGAGCAAAATCATGGGA 57.480 45.000 0.00 0.00 0.00 4.37
4797 7871 4.724074 TTTAGCAGAGCAAAATCATGGG 57.276 40.909 0.00 0.00 0.00 4.00
4798 7872 4.506654 GCATTTAGCAGAGCAAAATCATGG 59.493 41.667 0.00 0.00 44.79 3.66
4799 7873 5.637104 GCATTTAGCAGAGCAAAATCATG 57.363 39.130 0.00 0.00 44.79 3.07
4813 7887 1.667724 ACTCAGTGCGATGCATTTAGC 59.332 47.619 0.00 8.22 41.91 3.09
4814 7888 3.060003 GCTACTCAGTGCGATGCATTTAG 60.060 47.826 0.00 0.00 41.91 1.85
4815 7889 2.866156 GCTACTCAGTGCGATGCATTTA 59.134 45.455 0.00 0.00 41.91 1.40
4816 7890 1.667724 GCTACTCAGTGCGATGCATTT 59.332 47.619 0.00 0.00 41.91 2.32
4817 7891 1.134580 AGCTACTCAGTGCGATGCATT 60.135 47.619 0.00 0.00 41.91 3.56
4818 7892 0.463204 AGCTACTCAGTGCGATGCAT 59.537 50.000 0.00 0.00 41.91 3.96
4819 7893 1.102978 TAGCTACTCAGTGCGATGCA 58.897 50.000 0.00 0.00 35.60 3.96
4820 7894 2.430546 ATAGCTACTCAGTGCGATGC 57.569 50.000 0.00 0.00 0.00 3.91
4821 7895 5.465051 ACAATATAGCTACTCAGTGCGATG 58.535 41.667 0.00 0.00 0.00 3.84
4822 7896 5.713792 ACAATATAGCTACTCAGTGCGAT 57.286 39.130 0.00 0.00 0.00 4.58
4823 7897 5.515797 AACAATATAGCTACTCAGTGCGA 57.484 39.130 0.00 0.00 0.00 5.10
4824 7898 5.980116 AGAAACAATATAGCTACTCAGTGCG 59.020 40.000 0.00 0.00 0.00 5.34
4825 7899 6.422400 GGAGAAACAATATAGCTACTCAGTGC 59.578 42.308 0.00 0.00 0.00 4.40
4826 7900 7.492524 TGGAGAAACAATATAGCTACTCAGTG 58.507 38.462 0.00 0.00 0.00 3.66
4827 7901 7.343316 ACTGGAGAAACAATATAGCTACTCAGT 59.657 37.037 0.00 0.36 0.00 3.41
4828 7902 7.721402 ACTGGAGAAACAATATAGCTACTCAG 58.279 38.462 0.00 0.00 0.00 3.35
4829 7903 7.561722 AGACTGGAGAAACAATATAGCTACTCA 59.438 37.037 0.00 0.00 0.00 3.41
4830 7904 7.865385 CAGACTGGAGAAACAATATAGCTACTC 59.135 40.741 0.00 0.00 0.00 2.59
4831 7905 7.343316 ACAGACTGGAGAAACAATATAGCTACT 59.657 37.037 7.51 0.00 0.00 2.57
4832 7906 7.493367 ACAGACTGGAGAAACAATATAGCTAC 58.507 38.462 7.51 0.00 0.00 3.58
4833 7907 7.661536 ACAGACTGGAGAAACAATATAGCTA 57.338 36.000 7.51 0.00 0.00 3.32
4834 7908 6.552445 ACAGACTGGAGAAACAATATAGCT 57.448 37.500 7.51 0.00 0.00 3.32
4835 7909 6.422400 GCTACAGACTGGAGAAACAATATAGC 59.578 42.308 19.49 8.04 26.39 2.97
4836 7910 6.926272 GGCTACAGACTGGAGAAACAATATAG 59.074 42.308 19.49 1.79 26.39 1.31
4837 7911 6.382859 TGGCTACAGACTGGAGAAACAATATA 59.617 38.462 19.49 0.00 26.39 0.86
4838 7912 5.189736 TGGCTACAGACTGGAGAAACAATAT 59.810 40.000 19.49 0.00 26.39 1.28
4839 7913 4.530553 TGGCTACAGACTGGAGAAACAATA 59.469 41.667 19.49 0.00 26.39 1.90
4840 7914 3.327757 TGGCTACAGACTGGAGAAACAAT 59.672 43.478 19.49 0.00 26.39 2.71
4841 7915 2.703536 TGGCTACAGACTGGAGAAACAA 59.296 45.455 19.49 0.00 26.39 2.83
4842 7916 2.325484 TGGCTACAGACTGGAGAAACA 58.675 47.619 19.49 10.57 26.39 2.83
4854 7928 6.215041 GCCATGACATCAAACTGGCTACAG 62.215 50.000 14.92 0.00 46.97 2.74
4855 7929 3.346315 CCATGACATCAAACTGGCTACA 58.654 45.455 0.00 0.00 0.00 2.74
4856 7930 2.098117 GCCATGACATCAAACTGGCTAC 59.902 50.000 14.92 0.00 46.97 3.58
4857 7931 2.368439 GCCATGACATCAAACTGGCTA 58.632 47.619 14.92 0.00 46.97 3.93
4858 7932 1.180029 GCCATGACATCAAACTGGCT 58.820 50.000 14.92 0.00 46.97 4.75
4859 7933 3.727419 GCCATGACATCAAACTGGC 57.273 52.632 8.77 8.77 44.91 4.85
4860 7934 2.494471 ACATGCCATGACATCAAACTGG 59.506 45.455 12.53 0.00 0.00 4.00
4861 7935 3.507786 CACATGCCATGACATCAAACTG 58.492 45.455 12.53 0.00 0.00 3.16
4862 7936 2.494471 CCACATGCCATGACATCAAACT 59.506 45.455 12.53 0.00 0.00 2.66
4863 7937 2.231964 ACCACATGCCATGACATCAAAC 59.768 45.455 12.53 0.00 0.00 2.93
4864 7938 2.527497 ACCACATGCCATGACATCAAA 58.473 42.857 12.53 0.00 0.00 2.69
4865 7939 2.219080 ACCACATGCCATGACATCAA 57.781 45.000 12.53 0.00 0.00 2.57
4866 7940 3.581265 ATACCACATGCCATGACATCA 57.419 42.857 12.53 0.00 0.00 3.07
4867 7941 3.433274 CGTATACCACATGCCATGACATC 59.567 47.826 12.53 0.00 0.00 3.06
4868 7942 3.402110 CGTATACCACATGCCATGACAT 58.598 45.455 12.53 0.00 0.00 3.06
4869 7943 2.832563 CGTATACCACATGCCATGACA 58.167 47.619 12.53 0.00 0.00 3.58
4870 7944 1.531149 GCGTATACCACATGCCATGAC 59.469 52.381 12.53 0.00 0.00 3.06
4871 7945 1.139853 TGCGTATACCACATGCCATGA 59.860 47.619 12.53 0.00 0.00 3.07
4872 7946 1.592064 TGCGTATACCACATGCCATG 58.408 50.000 2.40 2.40 0.00 3.66
4873 7947 2.566833 ATGCGTATACCACATGCCAT 57.433 45.000 5.47 0.00 0.00 4.40
4874 7948 2.340210 AATGCGTATACCACATGCCA 57.660 45.000 6.77 0.00 0.00 4.92
4875 7949 3.066064 TCAAAATGCGTATACCACATGCC 59.934 43.478 6.77 0.00 0.00 4.40
4876 7950 4.035017 GTCAAAATGCGTATACCACATGC 58.965 43.478 6.77 0.65 0.00 4.06
4877 7951 5.484173 AGTCAAAATGCGTATACCACATG 57.516 39.130 6.77 0.00 0.00 3.21
4878 7952 7.639039 CATAAGTCAAAATGCGTATACCACAT 58.361 34.615 0.00 0.00 0.00 3.21
4879 7953 6.457663 GCATAAGTCAAAATGCGTATACCACA 60.458 38.462 0.00 0.00 39.15 4.17
4880 7954 5.907391 GCATAAGTCAAAATGCGTATACCAC 59.093 40.000 0.00 0.00 39.15 4.16
4881 7955 6.055231 GCATAAGTCAAAATGCGTATACCA 57.945 37.500 0.00 0.00 39.15 3.25
4889 7963 5.335127 ACGAGATTGCATAAGTCAAAATGC 58.665 37.500 0.00 0.44 46.92 3.56
4890 7964 6.630443 GCTACGAGATTGCATAAGTCAAAATG 59.370 38.462 0.00 0.00 0.00 2.32
4891 7965 6.540189 AGCTACGAGATTGCATAAGTCAAAAT 59.460 34.615 0.00 0.00 0.00 1.82
4892 7966 5.874810 AGCTACGAGATTGCATAAGTCAAAA 59.125 36.000 0.00 0.00 0.00 2.44
4893 7967 5.419542 AGCTACGAGATTGCATAAGTCAAA 58.580 37.500 0.00 0.00 0.00 2.69
4894 7968 5.011090 AGCTACGAGATTGCATAAGTCAA 57.989 39.130 0.00 0.00 0.00 3.18
4895 7969 4.655762 AGCTACGAGATTGCATAAGTCA 57.344 40.909 0.00 0.00 0.00 3.41
4896 7970 4.619336 GCTAGCTACGAGATTGCATAAGTC 59.381 45.833 7.70 0.00 32.85 3.01
4897 7971 4.279671 AGCTAGCTACGAGATTGCATAAGT 59.720 41.667 17.69 0.00 34.94 2.24
4898 7972 4.620609 CAGCTAGCTACGAGATTGCATAAG 59.379 45.833 18.86 0.00 34.94 1.73
4899 7973 4.550422 CAGCTAGCTACGAGATTGCATAA 58.450 43.478 18.86 0.00 34.94 1.90
4900 7974 3.612717 GCAGCTAGCTACGAGATTGCATA 60.613 47.826 18.86 0.00 34.94 3.14
4901 7975 2.865670 GCAGCTAGCTACGAGATTGCAT 60.866 50.000 18.86 0.00 34.94 3.96
4902 7976 1.536922 GCAGCTAGCTACGAGATTGCA 60.537 52.381 18.86 0.00 34.94 4.08
4903 7977 1.135867 GCAGCTAGCTACGAGATTGC 58.864 55.000 18.86 11.31 41.15 3.56
4904 7978 2.498807 TGCAGCTAGCTACGAGATTG 57.501 50.000 18.86 4.31 45.94 2.67
4905 7979 3.742433 AATGCAGCTAGCTACGAGATT 57.258 42.857 18.86 5.06 45.94 2.40
4906 7980 3.320541 AGAAATGCAGCTAGCTACGAGAT 59.679 43.478 18.86 2.18 45.94 2.75
4907 7981 2.690497 AGAAATGCAGCTAGCTACGAGA 59.310 45.455 18.86 0.00 45.94 4.04
4908 7982 3.090952 AGAAATGCAGCTAGCTACGAG 57.909 47.619 18.86 6.14 45.94 4.18
4909 7983 3.448686 GAAGAAATGCAGCTAGCTACGA 58.551 45.455 18.86 4.32 45.94 3.43
4910 7984 2.541762 GGAAGAAATGCAGCTAGCTACG 59.458 50.000 18.86 7.37 45.94 3.51
4911 7985 3.802866 AGGAAGAAATGCAGCTAGCTAC 58.197 45.455 18.86 13.19 45.94 3.58
4912 7986 3.181461 GGAGGAAGAAATGCAGCTAGCTA 60.181 47.826 18.86 2.62 45.94 3.32
4913 7987 2.421248 GGAGGAAGAAATGCAGCTAGCT 60.421 50.000 12.68 12.68 45.94 3.32
4914 7988 1.946081 GGAGGAAGAAATGCAGCTAGC 59.054 52.381 6.62 6.62 45.96 3.42
4915 7989 2.092753 TGGGAGGAAGAAATGCAGCTAG 60.093 50.000 0.00 0.00 0.00 3.42
4916 7990 1.915489 TGGGAGGAAGAAATGCAGCTA 59.085 47.619 0.00 0.00 0.00 3.32
4917 7991 0.700564 TGGGAGGAAGAAATGCAGCT 59.299 50.000 0.00 0.00 0.00 4.24
4918 7992 1.407979 CATGGGAGGAAGAAATGCAGC 59.592 52.381 0.00 0.00 0.00 5.25
4919 7993 3.008835 TCATGGGAGGAAGAAATGCAG 57.991 47.619 0.00 0.00 0.00 4.41
4920 7994 3.675348 ATCATGGGAGGAAGAAATGCA 57.325 42.857 0.00 0.00 0.00 3.96
4921 7995 5.114081 CAAAATCATGGGAGGAAGAAATGC 58.886 41.667 0.00 0.00 0.00 3.56
4922 7996 5.105064 AGCAAAATCATGGGAGGAAGAAATG 60.105 40.000 0.00 0.00 0.00 2.32
4923 7997 5.028131 AGCAAAATCATGGGAGGAAGAAAT 58.972 37.500 0.00 0.00 0.00 2.17
4924 7998 4.419282 AGCAAAATCATGGGAGGAAGAAA 58.581 39.130 0.00 0.00 0.00 2.52
4925 7999 4.019174 GAGCAAAATCATGGGAGGAAGAA 58.981 43.478 0.00 0.00 0.00 2.52
4926 8000 3.267812 AGAGCAAAATCATGGGAGGAAGA 59.732 43.478 0.00 0.00 0.00 2.87
4927 8001 3.380637 CAGAGCAAAATCATGGGAGGAAG 59.619 47.826 0.00 0.00 0.00 3.46
4928 8002 3.359033 CAGAGCAAAATCATGGGAGGAA 58.641 45.455 0.00 0.00 0.00 3.36
4929 8003 2.947243 GCAGAGCAAAATCATGGGAGGA 60.947 50.000 0.00 0.00 0.00 3.71
4930 8004 1.407979 GCAGAGCAAAATCATGGGAGG 59.592 52.381 0.00 0.00 0.00 4.30
4931 8005 1.407979 GGCAGAGCAAAATCATGGGAG 59.592 52.381 0.00 0.00 0.00 4.30
4932 8006 1.272592 TGGCAGAGCAAAATCATGGGA 60.273 47.619 0.00 0.00 0.00 4.37
4933 8007 1.187974 TGGCAGAGCAAAATCATGGG 58.812 50.000 0.00 0.00 0.00 4.00
4934 8008 3.322211 TTTGGCAGAGCAAAATCATGG 57.678 42.857 0.00 0.00 0.00 3.66
4935 8009 3.063452 GCATTTGGCAGAGCAAAATCATG 59.937 43.478 1.50 0.00 39.82 3.07
4936 8010 3.267483 GCATTTGGCAGAGCAAAATCAT 58.733 40.909 1.50 0.00 39.82 2.45
4937 8011 2.613474 GGCATTTGGCAGAGCAAAATCA 60.613 45.455 1.50 0.00 39.82 2.57
4938 8012 2.004733 GGCATTTGGCAGAGCAAAATC 58.995 47.619 1.50 0.00 39.82 2.17
4939 8013 1.348366 TGGCATTTGGCAGAGCAAAAT 59.652 42.857 2.26 0.00 42.19 1.82
4940 8014 0.757512 TGGCATTTGGCAGAGCAAAA 59.242 45.000 2.26 0.00 46.12 2.44
4941 8015 2.438730 TGGCATTTGGCAGAGCAAA 58.561 47.368 2.26 0.00 46.12 3.68
4982 8056 3.199071 ACATATTTCCCTTACCGCAGTGA 59.801 43.478 0.00 0.00 0.00 3.41
5021 8095 5.334802 CGGCACAGATGAAAACAGATGTTTA 60.335 40.000 11.13 0.00 46.47 2.01
5067 8141 3.308323 CGGCTTCTCTGAAGCAAAGATAC 59.692 47.826 26.64 11.59 44.71 2.24
5087 8161 5.545658 ACAAGACACATATGTTAAAGCGG 57.454 39.130 5.37 0.00 39.95 5.52
5162 8236 3.688185 GCCTACTAAACCGGAAAGGAAAG 59.312 47.826 9.46 0.00 45.00 2.62
5224 8950 6.790232 TGGAAAAACCAAGAAAATGAGACT 57.210 33.333 0.00 0.00 46.75 3.24
5256 8982 6.262273 TGTGGTGGAAAGAAGTGAAATAAGAC 59.738 38.462 0.00 0.00 0.00 3.01
5289 9015 3.780626 ACTTGCTAGTACTCCTTGGAGT 58.219 45.455 23.63 23.63 39.08 3.85
5290 9016 7.584122 TTATACTTGCTAGTACTCCTTGGAG 57.416 40.000 14.58 14.58 39.59 3.86
5302 9028 6.151312 TCCTCCTCGCTTATTATACTTGCTAG 59.849 42.308 0.00 0.00 0.00 3.42
5303 9029 6.008331 TCCTCCTCGCTTATTATACTTGCTA 58.992 40.000 0.00 0.00 0.00 3.49
5305 9031 4.924462 GTCCTCCTCGCTTATTATACTTGC 59.076 45.833 0.00 0.00 0.00 4.01
5307 9033 5.145564 TGGTCCTCCTCGCTTATTATACTT 58.854 41.667 0.00 0.00 34.23 2.24
5308 9034 4.737578 TGGTCCTCCTCGCTTATTATACT 58.262 43.478 0.00 0.00 34.23 2.12
5309 9035 4.523558 ACTGGTCCTCCTCGCTTATTATAC 59.476 45.833 0.00 0.00 34.23 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.