Multiple sequence alignment - TraesCS4B01G190900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G190900 chr4B 100.000 4663 0 0 1 4663 413493045 413488383 0.000000e+00 8612.0
1 TraesCS4B01G190900 chr4B 96.497 314 9 1 4288 4599 413487266 413487579 6.920000e-143 518.0
2 TraesCS4B01G190900 chr4B 78.947 266 41 13 2533 2794 480047736 480047482 2.890000e-37 167.0
3 TraesCS4B01G190900 chr4B 79.630 162 26 7 2535 2693 49756750 49756593 4.930000e-20 110.0
4 TraesCS4B01G190900 chr4D 91.652 2204 123 27 732 2901 335341529 335339353 0.000000e+00 2994.0
5 TraesCS4B01G190900 chr4D 86.772 1081 47 39 2885 3890 335339298 335338239 0.000000e+00 1116.0
6 TraesCS4B01G190900 chr4D 92.568 767 29 7 1 739 335342253 335341487 0.000000e+00 1075.0
7 TraesCS4B01G190900 chr4D 80.247 162 27 5 2535 2693 34710551 34710392 2.950000e-22 117.0
8 TraesCS4B01G190900 chr4A 90.951 1934 106 30 1 1891 137532666 137534573 0.000000e+00 2538.0
9 TraesCS4B01G190900 chr4A 95.007 721 31 3 3182 3899 137536998 137537716 0.000000e+00 1127.0
10 TraesCS4B01G190900 chr4A 96.960 625 18 1 1889 2512 137534830 137535454 0.000000e+00 1048.0
11 TraesCS4B01G190900 chr4A 92.236 644 27 13 2543 3167 137535454 137536093 0.000000e+00 891.0
12 TraesCS4B01G190900 chr4A 91.848 184 12 2 4062 4243 137537864 137538046 2.150000e-63 254.0
13 TraesCS4B01G190900 chr4A 100.000 52 0 0 3963 4014 137537715 137537766 3.840000e-16 97.1
14 TraesCS4B01G190900 chr2B 93.047 489 32 2 1003 1490 65313860 65314347 0.000000e+00 713.0
15 TraesCS4B01G190900 chr2B 80.217 369 54 13 1944 2307 65316013 65316367 4.630000e-65 259.0
16 TraesCS4B01G190900 chr2B 92.857 56 4 0 3888 3943 607246135 607246190 1.080000e-11 82.4
17 TraesCS4B01G190900 chr2B 95.652 46 2 0 3891 3936 48133900 48133945 1.800000e-09 75.0
18 TraesCS4B01G190900 chr2B 89.286 56 3 3 3882 3936 115720982 115721035 3.010000e-07 67.6
19 TraesCS4B01G190900 chr2D 92.638 489 34 2 1003 1490 37533505 37533992 0.000000e+00 702.0
20 TraesCS4B01G190900 chr2D 79.006 362 61 11 1940 2298 37536164 37536513 2.810000e-57 233.0
21 TraesCS4B01G190900 chr2D 89.552 67 7 0 3897 3963 430457856 430457922 8.310000e-13 86.1
22 TraesCS4B01G190900 chr2A 92.462 398 28 2 1094 1490 42398352 42398748 6.770000e-158 568.0
23 TraesCS4B01G190900 chr2A 78.495 372 65 11 1940 2308 42400966 42401325 3.630000e-56 230.0
24 TraesCS4B01G190900 chr6A 82.779 662 62 20 11 667 81120760 81121374 1.140000e-150 544.0
25 TraesCS4B01G190900 chr6A 91.304 69 5 1 3898 3965 9475838 9475770 4.970000e-15 93.5
26 TraesCS4B01G190900 chr6D 82.388 670 57 24 11 667 63767900 63768521 1.150000e-145 527.0
27 TraesCS4B01G190900 chr6D 84.937 239 20 10 4296 4521 327252884 327253119 1.310000e-55 228.0
28 TraesCS4B01G190900 chr6D 85.714 77 8 2 2704 2779 9550660 9550586 1.390000e-10 78.7
29 TraesCS4B01G190900 chr6D 85.714 77 8 2 2704 2779 9789040 9788966 1.390000e-10 78.7
30 TraesCS4B01G190900 chr3B 90.027 371 31 6 4296 4663 769809639 769809272 4.220000e-130 475.0
31 TraesCS4B01G190900 chr3B 83.761 234 28 7 4290 4523 30185561 30185784 3.650000e-51 213.0
32 TraesCS4B01G190900 chr6B 87.760 384 27 13 11 390 137458696 137459063 9.270000e-117 431.0
33 TraesCS4B01G190900 chr6B 81.955 266 39 9 2535 2794 536797335 536797597 2.830000e-52 217.0
34 TraesCS4B01G190900 chr6B 81.887 265 40 8 2535 2794 628514118 628513857 2.830000e-52 217.0
35 TraesCS4B01G190900 chr5B 89.266 177 15 1 4491 4663 18346292 18346468 7.860000e-53 219.0
36 TraesCS4B01G190900 chr5B 97.826 46 1 0 3891 3936 670952852 670952897 3.870000e-11 80.5
37 TraesCS4B01G190900 chr5D 77.333 225 39 12 2577 2795 228058561 228058343 6.340000e-24 122.0
38 TraesCS4B01G190900 chr1D 80.537 149 23 6 2547 2690 437417550 437417697 4.930000e-20 110.0
39 TraesCS4B01G190900 chr7A 100.000 41 0 0 3896 3936 150236822 150236862 5.000000e-10 76.8
40 TraesCS4B01G190900 chr7D 100.000 39 0 0 3898 3936 180683333 180683295 6.470000e-09 73.1
41 TraesCS4B01G190900 chr7B 97.619 42 1 0 3895 3936 312542056 312542097 6.470000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G190900 chr4B 413488383 413493045 4662 True 8612.000000 8612 100.000000 1 4663 1 chr4B.!!$R2 4662
1 TraesCS4B01G190900 chr4D 335338239 335342253 4014 True 1728.333333 2994 90.330667 1 3890 3 chr4D.!!$R2 3889
2 TraesCS4B01G190900 chr4A 137532666 137538046 5380 False 992.516667 2538 94.500333 1 4243 6 chr4A.!!$F1 4242
3 TraesCS4B01G190900 chr2B 65313860 65316367 2507 False 486.000000 713 86.632000 1003 2307 2 chr2B.!!$F4 1304
4 TraesCS4B01G190900 chr2D 37533505 37536513 3008 False 467.500000 702 85.822000 1003 2298 2 chr2D.!!$F2 1295
5 TraesCS4B01G190900 chr2A 42398352 42401325 2973 False 399.000000 568 85.478500 1094 2308 2 chr2A.!!$F1 1214
6 TraesCS4B01G190900 chr6A 81120760 81121374 614 False 544.000000 544 82.779000 11 667 1 chr6A.!!$F1 656
7 TraesCS4B01G190900 chr6D 63767900 63768521 621 False 527.000000 527 82.388000 11 667 1 chr6D.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 735 0.671781 GTGAGGCGCACAAGATCTGT 60.672 55.0 16.77 0.0 46.91 3.41 F
1507 1583 0.907230 GAAGGAGACTGGCCCTGACT 60.907 60.0 0.00 0.0 42.68 3.41 F
2977 5587 1.369625 GGTTGATTGGCTAGTCACCG 58.630 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2324 4858 2.019984 CCTAGAGCCAAAGCCAACATC 58.980 52.381 0.0 0.0 41.25 3.06 R
3249 6796 3.265995 GGTCCTATCCCAAGGAGAAACAA 59.734 47.826 0.0 0.0 46.40 2.83 R
3899 7476 0.035458 GCATTATGGGACGGAGGGAG 59.965 60.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 130 4.054780 TGGAGACATATTAAGTCGGCAC 57.945 45.455 0.00 0.00 40.84 5.01
246 261 7.958088 AGTATTAAGAGATTAGAGTTGGAGGC 58.042 38.462 0.00 0.00 0.00 4.70
510 539 3.501950 GATGAACGGAAAGGCAATGAAC 58.498 45.455 0.00 0.00 0.00 3.18
630 666 0.693430 GTAAGGGAAGGGGATCCGGT 60.693 60.000 5.45 0.00 40.62 5.28
632 668 4.191015 GGGAAGGGGATCCGGTGC 62.191 72.222 5.45 0.00 40.62 5.01
635 671 3.406595 GAAGGGGATCCGGTGCTGG 62.407 68.421 5.45 0.00 38.33 4.85
691 735 0.671781 GTGAGGCGCACAAGATCTGT 60.672 55.000 16.77 0.00 46.91 3.41
706 750 3.072468 TGTTCCCCGCTACCCGAG 61.072 66.667 0.00 0.00 40.02 4.63
739 783 1.913778 TCACAGGAGTACGCTAACCA 58.086 50.000 0.00 0.00 0.00 3.67
788 832 2.767505 CTATCCGGTTCCAATACCTGC 58.232 52.381 0.00 0.00 35.97 4.85
813 857 3.330720 GTGTGGGGGAGAGTGGGG 61.331 72.222 0.00 0.00 0.00 4.96
814 858 3.537506 TGTGGGGGAGAGTGGGGA 61.538 66.667 0.00 0.00 0.00 4.81
823 867 0.973496 GAGAGTGGGGAGACTGGACC 60.973 65.000 0.00 0.00 0.00 4.46
833 877 4.779733 ACTGGACCGGCCCGAGAT 62.780 66.667 3.71 0.00 34.97 2.75
834 878 4.227134 CTGGACCGGCCCGAGATG 62.227 72.222 3.71 0.00 34.97 2.90
880 950 4.499183 GATCCACCAAGAGAGTACAACAG 58.501 47.826 0.00 0.00 0.00 3.16
974 1050 3.702048 CCCTCCAACTCCGGCGAA 61.702 66.667 9.30 0.00 0.00 4.70
998 1074 3.528370 CACCCGGTAGGCGGAGAG 61.528 72.222 0.00 0.00 40.58 3.20
1347 1423 3.055110 ATCATGCGCCACGTTGCA 61.055 55.556 12.54 10.69 46.51 4.08
1497 1573 1.917568 ACCTACGAGGAGAAGGAGACT 59.082 52.381 7.76 0.00 39.73 3.24
1507 1583 0.907230 GAAGGAGACTGGCCCTGACT 60.907 60.000 0.00 0.00 42.68 3.41
1541 1617 7.926018 GGTTACCCACCAATTATCATGATTTTC 59.074 37.037 14.65 0.00 46.42 2.29
1679 2149 5.486526 AGATGTCAGGTTCTCATTCTGTTC 58.513 41.667 0.00 0.00 0.00 3.18
1943 4194 8.547967 TGTCAGAAAATGGAAGTGATACTTAC 57.452 34.615 0.00 0.00 38.80 2.34
2136 4670 2.954318 CCTGTTTCTGCCTTGGGATATG 59.046 50.000 0.00 0.00 0.00 1.78
2166 4700 5.830991 ACACTTTGGGTTGCTTATTCAGTTA 59.169 36.000 0.00 0.00 0.00 2.24
2324 4858 4.267536 TCTTCAGCCTCTTTCCATGATTG 58.732 43.478 0.00 0.00 0.00 2.67
2337 4871 3.196039 TCCATGATTGATGTTGGCTTTGG 59.804 43.478 0.00 0.00 0.00 3.28
2354 4888 2.478872 TGGCTCTAGGTATCCTGCTT 57.521 50.000 0.00 0.00 34.61 3.91
2364 4898 8.262601 TCTAGGTATCCTGCTTGATTGATTAA 57.737 34.615 0.00 0.00 34.61 1.40
2454 4989 5.572896 ACTGCGCTTTAGCACATTTTATTTC 59.427 36.000 9.73 0.00 42.92 2.17
2478 5013 8.498054 TCTCTTGATTGATTAGATGGTCAAAC 57.502 34.615 0.00 0.00 37.82 2.93
2513 5048 5.371526 AGAAAGAAGCTTCTGATGTGTCAA 58.628 37.500 29.09 0.00 37.65 3.18
2514 5049 5.469421 AGAAAGAAGCTTCTGATGTGTCAAG 59.531 40.000 29.09 0.00 37.65 3.02
2516 5051 4.567971 AGAAGCTTCTGATGTGTCAAGAG 58.432 43.478 27.96 0.00 35.89 2.85
2541 5076 6.927936 GGATTTAAGATTACGAGTTACTCCCC 59.072 42.308 6.80 0.00 0.00 4.81
2582 5117 7.948357 AGGTGTATTAGTTTTTCCAAAAGTCC 58.052 34.615 0.00 0.00 0.00 3.85
2589 5124 8.766000 TTAGTTTTTCCAAAAGTCCAACTTTC 57.234 30.769 5.61 0.00 46.78 2.62
2813 5351 3.403228 ACATTATTGGCTGGGTGGATT 57.597 42.857 0.00 0.00 0.00 3.01
2918 5528 8.855110 ACAATGTTTGATAGTTTGTTGTCCATA 58.145 29.630 0.00 0.00 0.00 2.74
2977 5587 1.369625 GGTTGATTGGCTAGTCACCG 58.630 55.000 0.00 0.00 0.00 4.94
2981 5591 2.388735 TGATTGGCTAGTCACCGAGAT 58.611 47.619 0.00 0.00 0.00 2.75
2982 5592 2.766263 TGATTGGCTAGTCACCGAGATT 59.234 45.455 0.00 0.00 0.00 2.40
2986 5596 2.101415 TGGCTAGTCACCGAGATTGATG 59.899 50.000 0.00 0.00 0.00 3.07
2987 5597 2.131183 GCTAGTCACCGAGATTGATGC 58.869 52.381 0.00 0.00 0.00 3.91
2988 5598 2.223923 GCTAGTCACCGAGATTGATGCT 60.224 50.000 0.00 0.00 0.00 3.79
2992 5623 5.791336 AGTCACCGAGATTGATGCTAATA 57.209 39.130 0.00 0.00 0.00 0.98
3021 5652 3.582647 TCTTCTGTGACCAAGGATGCTAA 59.417 43.478 0.00 0.00 0.00 3.09
3104 5736 5.767665 ACAGTGGTTATTTGCATGAACTGTA 59.232 36.000 0.00 0.00 43.71 2.74
3188 6735 7.550551 CAGCTGTATGAATTTTTAGACCTCAGA 59.449 37.037 5.25 0.00 0.00 3.27
3379 6926 3.577415 ACCTAGAGCTGTAAGTTTTCGGT 59.423 43.478 0.00 0.00 35.30 4.69
3381 6928 2.767505 AGAGCTGTAAGTTTTCGGTGG 58.232 47.619 0.00 0.00 35.30 4.61
3712 7286 3.118775 TCGTTGTATAGCATCAGCCAAGT 60.119 43.478 0.00 0.00 43.56 3.16
3780 7354 0.911769 TCTTGGATGTTCATCGGCCT 59.088 50.000 0.00 0.00 0.00 5.19
3897 7474 3.395639 CAGTCTTGGCATGCAAAATGTT 58.604 40.909 21.36 0.00 0.00 2.71
3898 7475 4.558178 CAGTCTTGGCATGCAAAATGTTA 58.442 39.130 21.36 0.00 0.00 2.41
3899 7476 4.386652 CAGTCTTGGCATGCAAAATGTTAC 59.613 41.667 21.36 7.76 0.00 2.50
3900 7477 4.281688 AGTCTTGGCATGCAAAATGTTACT 59.718 37.500 21.36 9.82 0.00 2.24
3901 7478 4.622740 GTCTTGGCATGCAAAATGTTACTC 59.377 41.667 21.36 0.00 0.00 2.59
3902 7479 3.591196 TGGCATGCAAAATGTTACTCC 57.409 42.857 21.36 0.00 0.00 3.85
3903 7480 2.233431 TGGCATGCAAAATGTTACTCCC 59.767 45.455 21.36 0.00 0.00 4.30
3904 7481 2.497273 GGCATGCAAAATGTTACTCCCT 59.503 45.455 21.36 0.00 0.00 4.20
3905 7482 3.429410 GGCATGCAAAATGTTACTCCCTC 60.429 47.826 21.36 0.00 0.00 4.30
3906 7483 3.429410 GCATGCAAAATGTTACTCCCTCC 60.429 47.826 14.21 0.00 0.00 4.30
3907 7484 2.432444 TGCAAAATGTTACTCCCTCCG 58.568 47.619 0.00 0.00 0.00 4.63
3908 7485 2.224670 TGCAAAATGTTACTCCCTCCGT 60.225 45.455 0.00 0.00 0.00 4.69
3909 7486 2.418976 GCAAAATGTTACTCCCTCCGTC 59.581 50.000 0.00 0.00 0.00 4.79
3910 7487 3.007635 CAAAATGTTACTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
3911 7488 1.201424 AATGTTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
3912 7489 0.042131 ATGTTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3913 7490 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
3914 7491 1.288633 TGTTACTCCCTCCGTCCCATA 59.711 52.381 0.00 0.00 0.00 2.74
3915 7492 2.292389 TGTTACTCCCTCCGTCCCATAA 60.292 50.000 0.00 0.00 0.00 1.90
3916 7493 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
3917 7494 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3918 7495 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56
3919 7496 0.692756 TCCCTCCGTCCCATAATGCA 60.693 55.000 0.00 0.00 0.00 3.96
3920 7497 0.182537 CCCTCCGTCCCATAATGCAA 59.817 55.000 0.00 0.00 0.00 4.08
3921 7498 1.597742 CCTCCGTCCCATAATGCAAG 58.402 55.000 0.00 0.00 0.00 4.01
3922 7499 1.140852 CCTCCGTCCCATAATGCAAGA 59.859 52.381 0.00 0.00 0.00 3.02
3923 7500 2.213499 CTCCGTCCCATAATGCAAGAC 58.787 52.381 0.00 0.00 0.00 3.01
3925 7502 1.651987 CGTCCCATAATGCAAGACGT 58.348 50.000 11.91 0.00 43.89 4.34
3926 7503 2.006888 CGTCCCATAATGCAAGACGTT 58.993 47.619 11.91 0.00 43.89 3.99
3927 7504 2.418628 CGTCCCATAATGCAAGACGTTT 59.581 45.455 11.91 0.00 43.89 3.60
3928 7505 3.119990 CGTCCCATAATGCAAGACGTTTT 60.120 43.478 11.91 0.00 43.89 2.43
3929 7506 4.614993 CGTCCCATAATGCAAGACGTTTTT 60.615 41.667 11.91 0.00 43.89 1.94
3951 7528 6.489127 TTTGACACGATTTTACAGTATGGG 57.511 37.500 0.00 0.00 43.62 4.00
3952 7529 5.408880 TGACACGATTTTACAGTATGGGA 57.591 39.130 0.00 0.00 43.62 4.37
3953 7530 5.172934 TGACACGATTTTACAGTATGGGAC 58.827 41.667 0.00 0.00 43.62 4.46
3954 7531 4.178540 ACACGATTTTACAGTATGGGACG 58.821 43.478 0.00 0.00 43.62 4.79
3955 7532 3.554324 CACGATTTTACAGTATGGGACGG 59.446 47.826 0.00 0.00 43.62 4.79
3956 7533 3.448301 ACGATTTTACAGTATGGGACGGA 59.552 43.478 0.00 0.00 43.62 4.69
3957 7534 4.049186 CGATTTTACAGTATGGGACGGAG 58.951 47.826 0.00 0.00 43.62 4.63
3958 7535 3.899052 TTTTACAGTATGGGACGGAGG 57.101 47.619 0.00 0.00 43.62 4.30
3959 7536 1.784358 TTACAGTATGGGACGGAGGG 58.216 55.000 0.00 0.00 43.62 4.30
3960 7537 0.928505 TACAGTATGGGACGGAGGGA 59.071 55.000 0.00 0.00 43.62 4.20
3961 7538 0.397254 ACAGTATGGGACGGAGGGAG 60.397 60.000 0.00 0.00 43.62 4.30
4014 7591 4.792704 GCTGGTTGTTCTTTGTACACATGG 60.793 45.833 0.00 0.00 0.00 3.66
4015 7592 4.274147 TGGTTGTTCTTTGTACACATGGT 58.726 39.130 0.00 0.00 0.00 3.55
4025 7602 0.615261 TACACATGGTACTCCGCCCA 60.615 55.000 0.00 0.00 36.30 5.36
4027 7604 1.916273 ACATGGTACTCCGCCCACA 60.916 57.895 0.00 0.00 36.30 4.17
4028 7605 1.449601 CATGGTACTCCGCCCACAC 60.450 63.158 0.00 0.00 36.30 3.82
4029 7606 3.014085 ATGGTACTCCGCCCACACG 62.014 63.158 0.00 0.00 36.30 4.49
4030 7607 3.376078 GGTACTCCGCCCACACGA 61.376 66.667 0.00 0.00 34.06 4.35
4031 7608 2.718073 GGTACTCCGCCCACACGAT 61.718 63.158 0.00 0.00 34.06 3.73
4035 7612 3.723235 CTCCGCCCACACGATCCAG 62.723 68.421 0.00 0.00 34.06 3.86
4037 7614 2.717044 CCGCCCACACGATCCAGTA 61.717 63.158 0.00 0.00 34.06 2.74
4055 7632 7.633193 TCCAGTACTTTGTGTTTGTTATTGT 57.367 32.000 0.00 0.00 0.00 2.71
4056 7633 7.476667 TCCAGTACTTTGTGTTTGTTATTGTG 58.523 34.615 0.00 0.00 0.00 3.33
4057 7634 7.121463 TCCAGTACTTTGTGTTTGTTATTGTGT 59.879 33.333 0.00 0.00 0.00 3.72
4058 7635 7.757624 CCAGTACTTTGTGTTTGTTATTGTGTT 59.242 33.333 0.00 0.00 0.00 3.32
4060 7637 9.134734 AGTACTTTGTGTTTGTTATTGTGTTTG 57.865 29.630 0.00 0.00 0.00 2.93
4101 7729 1.002257 AGCAATGATGGTGCGGTGA 60.002 52.632 0.00 0.00 46.86 4.02
4102 7730 1.137404 GCAATGATGGTGCGGTGAC 59.863 57.895 0.00 0.00 31.20 3.67
4117 7745 1.451567 TGACGCCTCTCCCTCGTAG 60.452 63.158 0.00 0.00 36.50 3.51
4122 7750 0.955905 GCCTCTCCCTCGTAGTCATC 59.044 60.000 0.00 0.00 0.00 2.92
4126 7754 0.663688 CTCCCTCGTAGTCATCACCG 59.336 60.000 0.00 0.00 0.00 4.94
4145 7773 2.629051 CGAAGGGTTCTGTAACATCCC 58.371 52.381 0.00 0.00 37.34 3.85
4148 7776 0.107361 GGGTTCTGTAACATCCCGGG 60.107 60.000 16.85 16.85 37.34 5.73
4219 7849 5.006165 GTGTCTAGTAAGCATCATCTTGCAC 59.994 44.000 0.00 0.00 45.23 4.57
4274 7904 8.508883 ACCTATAACTATAAGGATGCTAGTCG 57.491 38.462 0.00 0.00 0.00 4.18
4275 7905 8.327271 ACCTATAACTATAAGGATGCTAGTCGA 58.673 37.037 0.00 0.00 0.00 4.20
4276 7906 8.614346 CCTATAACTATAAGGATGCTAGTCGAC 58.386 40.741 7.70 7.70 0.00 4.20
4277 7907 5.708877 AACTATAAGGATGCTAGTCGACC 57.291 43.478 13.01 0.00 0.00 4.79
4278 7908 4.080687 ACTATAAGGATGCTAGTCGACCC 58.919 47.826 13.01 4.95 0.00 4.46
4279 7909 2.750141 TAAGGATGCTAGTCGACCCT 57.250 50.000 13.01 7.49 0.00 4.34
4280 7910 1.404843 AAGGATGCTAGTCGACCCTC 58.595 55.000 13.01 1.58 0.00 4.30
4281 7911 0.468400 AGGATGCTAGTCGACCCTCC 60.468 60.000 13.01 11.13 0.00 4.30
4282 7912 0.468400 GGATGCTAGTCGACCCTCCT 60.468 60.000 13.01 0.00 0.00 3.69
4283 7913 0.955905 GATGCTAGTCGACCCTCCTC 59.044 60.000 13.01 0.47 0.00 3.71
4284 7914 0.468400 ATGCTAGTCGACCCTCCTCC 60.468 60.000 13.01 0.00 0.00 4.30
4285 7915 1.076923 GCTAGTCGACCCTCCTCCA 60.077 63.158 13.01 0.00 0.00 3.86
4286 7916 1.385756 GCTAGTCGACCCTCCTCCAC 61.386 65.000 13.01 0.00 0.00 4.02
4287 7917 1.077930 TAGTCGACCCTCCTCCACG 60.078 63.158 13.01 0.00 0.00 4.94
4288 7918 2.547640 TAGTCGACCCTCCTCCACGG 62.548 65.000 13.01 0.00 0.00 4.94
4289 7919 4.753662 TCGACCCTCCTCCACGGG 62.754 72.222 0.00 0.00 46.26 5.28
4292 7922 3.674050 GACCCTCCTCCACGGGCTA 62.674 68.421 0.00 0.00 44.63 3.93
4293 7923 2.122813 CCCTCCTCCACGGGCTAT 60.123 66.667 0.00 0.00 32.83 2.97
4294 7924 1.766461 CCCTCCTCCACGGGCTATT 60.766 63.158 0.00 0.00 32.83 1.73
4295 7925 1.345715 CCCTCCTCCACGGGCTATTT 61.346 60.000 0.00 0.00 32.83 1.40
4296 7926 0.546598 CCTCCTCCACGGGCTATTTT 59.453 55.000 0.00 0.00 0.00 1.82
4297 7927 1.064685 CCTCCTCCACGGGCTATTTTT 60.065 52.381 0.00 0.00 0.00 1.94
4349 7979 8.840833 ATTTTCAAAAATATTACGCCCTTTGT 57.159 26.923 0.00 0.00 36.88 2.83
4350 7980 8.664211 TTTTCAAAAATATTACGCCCTTTGTT 57.336 26.923 7.54 0.00 0.00 2.83
4351 7981 8.664211 TTTCAAAAATATTACGCCCTTTGTTT 57.336 26.923 7.54 0.00 0.00 2.83
4352 7982 8.664211 TTCAAAAATATTACGCCCTTTGTTTT 57.336 26.923 7.54 0.00 0.00 2.43
4353 7983 9.760077 TTCAAAAATATTACGCCCTTTGTTTTA 57.240 25.926 7.54 0.00 0.00 1.52
4354 7984 9.930693 TCAAAAATATTACGCCCTTTGTTTTAT 57.069 25.926 7.54 0.00 0.00 1.40
4379 8009 9.855021 ATTTTTAAAAATATTACAGCGTCAGCT 57.145 25.926 21.77 0.00 44.75 4.24
4389 8019 2.666989 GCGTCAGCTTACTACAGGC 58.333 57.895 0.00 0.00 41.01 4.85
4390 8020 0.806492 GCGTCAGCTTACTACAGGCC 60.806 60.000 0.00 0.00 41.01 5.19
4391 8021 0.525668 CGTCAGCTTACTACAGGCCG 60.526 60.000 0.00 0.00 0.00 6.13
4392 8022 0.815734 GTCAGCTTACTACAGGCCGA 59.184 55.000 0.00 0.00 0.00 5.54
4393 8023 0.815734 TCAGCTTACTACAGGCCGAC 59.184 55.000 0.00 0.00 0.00 4.79
4394 8024 0.530744 CAGCTTACTACAGGCCGACA 59.469 55.000 0.00 0.00 0.00 4.35
4395 8025 0.818296 AGCTTACTACAGGCCGACAG 59.182 55.000 0.00 0.00 0.00 3.51
4396 8026 0.179108 GCTTACTACAGGCCGACAGG 60.179 60.000 0.00 0.00 41.62 4.00
4397 8027 1.471119 CTTACTACAGGCCGACAGGA 58.529 55.000 0.00 0.00 41.02 3.86
4398 8028 1.405821 CTTACTACAGGCCGACAGGAG 59.594 57.143 0.00 0.00 41.02 3.69
4399 8029 1.035932 TACTACAGGCCGACAGGAGC 61.036 60.000 0.00 0.00 41.02 4.70
4405 8035 3.695606 GCCGACAGGAGCCAGTCA 61.696 66.667 11.81 0.00 41.02 3.41
4406 8036 2.575993 CCGACAGGAGCCAGTCAG 59.424 66.667 11.81 5.30 41.02 3.51
4407 8037 2.125753 CGACAGGAGCCAGTCAGC 60.126 66.667 11.81 0.00 32.94 4.26
4408 8038 2.267324 GACAGGAGCCAGTCAGCC 59.733 66.667 7.13 0.00 33.48 4.85
4409 8039 2.203907 ACAGGAGCCAGTCAGCCT 60.204 61.111 0.00 0.00 0.00 4.58
4410 8040 0.972983 GACAGGAGCCAGTCAGCCTA 60.973 60.000 7.13 0.00 33.48 3.93
4411 8041 1.261238 ACAGGAGCCAGTCAGCCTAC 61.261 60.000 0.00 0.00 0.00 3.18
4412 8042 0.975040 CAGGAGCCAGTCAGCCTACT 60.975 60.000 0.00 0.00 0.00 2.57
4413 8043 0.975040 AGGAGCCAGTCAGCCTACTG 60.975 60.000 8.70 8.70 45.33 2.74
4414 8044 1.153469 GAGCCAGTCAGCCTACTGC 60.153 63.158 9.94 6.48 44.56 4.40
4425 8055 2.355717 GCCTACTGCTAGCCGATTAG 57.644 55.000 13.29 4.75 36.87 1.73
4426 8056 1.067495 GCCTACTGCTAGCCGATTAGG 60.067 57.143 13.29 16.08 39.22 2.69
4427 8057 1.546476 CCTACTGCTAGCCGATTAGGG 59.454 57.143 13.29 1.71 41.48 3.53
4435 8065 1.067582 GCCGATTAGGGTCCAGTCG 59.932 63.158 0.00 0.00 41.48 4.18
4436 8066 1.740285 CCGATTAGGGTCCAGTCGG 59.260 63.158 11.30 11.30 44.72 4.79
4437 8067 1.067582 CGATTAGGGTCCAGTCGGC 59.932 63.158 0.00 0.00 0.00 5.54
4438 8068 1.446366 GATTAGGGTCCAGTCGGCC 59.554 63.158 0.00 0.00 0.00 6.13
4439 8069 1.003051 ATTAGGGTCCAGTCGGCCT 59.997 57.895 0.00 0.00 0.00 5.19
4440 8070 0.263765 ATTAGGGTCCAGTCGGCCTA 59.736 55.000 0.00 0.00 0.00 3.93
4441 8071 0.685458 TTAGGGTCCAGTCGGCCTAC 60.685 60.000 0.00 0.00 29.40 3.18
4442 8072 2.898920 TAGGGTCCAGTCGGCCTACG 62.899 65.000 0.00 0.00 46.11 3.51
4443 8073 3.834799 GGTCCAGTCGGCCTACGG 61.835 72.222 0.00 6.57 44.45 4.02
4444 8074 3.834799 GTCCAGTCGGCCTACGGG 61.835 72.222 18.92 18.92 44.45 5.28
4445 8075 4.051167 TCCAGTCGGCCTACGGGA 62.051 66.667 22.75 22.75 44.45 5.14
4446 8076 3.072468 CCAGTCGGCCTACGGGAA 61.072 66.667 20.08 0.00 44.45 3.97
4447 8077 2.494918 CAGTCGGCCTACGGGAAG 59.505 66.667 0.00 0.00 44.45 3.46
4448 8078 3.459063 AGTCGGCCTACGGGAAGC 61.459 66.667 0.00 0.00 44.45 3.86
4449 8079 4.525949 GTCGGCCTACGGGAAGCC 62.526 72.222 0.00 0.00 44.45 4.35
4452 8082 3.547513 GGCCTACGGGAAGCCGAT 61.548 66.667 0.00 0.00 36.84 4.18
4453 8083 2.504519 GCCTACGGGAAGCCGATT 59.495 61.111 0.00 0.00 36.94 3.34
4454 8084 1.887707 GCCTACGGGAAGCCGATTG 60.888 63.158 0.00 0.00 36.94 2.67
4455 8085 1.227556 CCTACGGGAAGCCGATTGG 60.228 63.158 0.00 0.00 36.94 3.16
4456 8086 1.227556 CTACGGGAAGCCGATTGGG 60.228 63.158 0.00 0.00 39.58 4.12
4463 8093 2.990479 AGCCGATTGGGTCCAGTC 59.010 61.111 0.00 2.82 44.55 3.51
4467 8097 2.990479 GATTGGGTCCAGTCGGCT 59.010 61.111 0.00 0.00 0.00 5.52
4468 8098 1.299976 GATTGGGTCCAGTCGGCTT 59.700 57.895 0.00 0.00 0.00 4.35
4469 8099 0.744771 GATTGGGTCCAGTCGGCTTC 60.745 60.000 0.00 0.00 0.00 3.86
4470 8100 2.198304 ATTGGGTCCAGTCGGCTTCC 62.198 60.000 0.00 0.00 0.00 3.46
4471 8101 3.003763 GGGTCCAGTCGGCTTCCT 61.004 66.667 0.00 0.00 0.00 3.36
4472 8102 2.266055 GGTCCAGTCGGCTTCCTG 59.734 66.667 0.00 0.00 0.00 3.86
4473 8103 2.584391 GGTCCAGTCGGCTTCCTGT 61.584 63.158 0.00 0.00 0.00 4.00
4474 8104 1.255667 GGTCCAGTCGGCTTCCTGTA 61.256 60.000 0.00 0.00 0.00 2.74
4475 8105 0.606604 GTCCAGTCGGCTTCCTGTAA 59.393 55.000 0.00 0.00 0.00 2.41
4476 8106 0.895530 TCCAGTCGGCTTCCTGTAAG 59.104 55.000 0.00 0.00 38.32 2.34
4493 8123 9.692749 TTCCTGTAAGCTGATTAATACTAATCG 57.307 33.333 0.00 0.00 44.43 3.34
4501 8131 7.748031 CTGATTAATACTAATCGGCTAGCAG 57.252 40.000 18.24 13.50 44.43 4.24
4502 8132 7.228314 TGATTAATACTAATCGGCTAGCAGT 57.772 36.000 18.24 13.17 44.43 4.40
4503 8133 7.667557 TGATTAATACTAATCGGCTAGCAGTT 58.332 34.615 18.24 11.70 44.43 3.16
4504 8134 7.598869 TGATTAATACTAATCGGCTAGCAGTTG 59.401 37.037 18.24 3.03 44.43 3.16
4505 8135 2.604046 ACTAATCGGCTAGCAGTTGG 57.396 50.000 18.24 13.12 0.00 3.77
4506 8136 1.221414 CTAATCGGCTAGCAGTTGGC 58.779 55.000 18.24 0.00 45.30 4.52
4515 8145 3.348236 GCAGTTGGCTGACTGGTG 58.652 61.111 18.56 1.05 45.59 4.17
4516 8146 2.912624 GCAGTTGGCTGACTGGTGC 61.913 63.158 18.56 6.26 45.59 5.01
4517 8147 1.526686 CAGTTGGCTGACTGGTGCA 60.527 57.895 12.00 0.00 45.28 4.57
4518 8148 0.892358 CAGTTGGCTGACTGGTGCAT 60.892 55.000 12.00 0.00 45.28 3.96
4519 8149 0.892358 AGTTGGCTGACTGGTGCATG 60.892 55.000 0.00 0.00 0.00 4.06
4520 8150 1.604308 TTGGCTGACTGGTGCATGG 60.604 57.895 0.00 0.00 0.00 3.66
4521 8151 3.446570 GGCTGACTGGTGCATGGC 61.447 66.667 0.00 0.00 0.00 4.40
4522 8152 3.446570 GCTGACTGGTGCATGGCC 61.447 66.667 0.00 0.00 0.00 5.36
4523 8153 2.753043 CTGACTGGTGCATGGCCC 60.753 66.667 0.00 0.00 0.00 5.80
4524 8154 3.572447 CTGACTGGTGCATGGCCCA 62.572 63.158 0.00 0.00 0.00 5.36
4525 8155 2.043652 GACTGGTGCATGGCCCAT 60.044 61.111 0.00 0.00 30.92 4.00
4526 8156 2.363276 ACTGGTGCATGGCCCATG 60.363 61.111 19.72 19.72 43.91 3.66
4534 8164 3.972107 CATGGCCCATGCAATGTAC 57.028 52.632 11.50 0.00 44.81 2.90
4535 8165 1.112950 CATGGCCCATGCAATGTACA 58.887 50.000 11.50 0.00 44.81 2.90
4536 8166 1.689813 CATGGCCCATGCAATGTACAT 59.310 47.619 11.50 1.41 44.81 2.29
4537 8167 1.112950 TGGCCCATGCAATGTACATG 58.887 50.000 9.63 5.10 44.81 3.21
4538 8168 1.113788 GGCCCATGCAATGTACATGT 58.886 50.000 9.63 2.69 44.81 3.21
4539 8169 1.481772 GGCCCATGCAATGTACATGTT 59.518 47.619 9.63 0.00 44.81 2.71
4540 8170 2.093553 GGCCCATGCAATGTACATGTTT 60.094 45.455 9.63 0.00 44.81 2.83
4541 8171 3.598299 GCCCATGCAATGTACATGTTTT 58.402 40.909 9.63 0.00 44.81 2.43
4542 8172 4.382470 GGCCCATGCAATGTACATGTTTTA 60.382 41.667 9.63 0.00 44.81 1.52
4543 8173 4.566360 GCCCATGCAATGTACATGTTTTAC 59.434 41.667 9.63 0.00 44.81 2.01
4544 8174 4.797868 CCCATGCAATGTACATGTTTTACG 59.202 41.667 9.63 0.00 44.81 3.18
4545 8175 5.398169 CCATGCAATGTACATGTTTTACGT 58.602 37.500 9.63 0.00 44.81 3.57
4546 8176 5.285845 CCATGCAATGTACATGTTTTACGTG 59.714 40.000 9.63 2.30 44.81 4.49
4547 8177 5.855925 CATGCAATGTACATGTTTTACGTGT 59.144 36.000 9.63 9.38 42.60 4.49
4548 8178 5.208503 TGCAATGTACATGTTTTACGTGTG 58.791 37.500 9.63 0.80 46.79 3.82
4549 8179 5.007724 TGCAATGTACATGTTTTACGTGTGA 59.992 36.000 9.63 2.60 46.79 3.58
4550 8180 6.083630 GCAATGTACATGTTTTACGTGTGAT 58.916 36.000 9.63 4.48 46.79 3.06
4551 8181 7.095187 TGCAATGTACATGTTTTACGTGTGATA 60.095 33.333 9.63 2.39 46.79 2.15
4552 8182 7.425309 GCAATGTACATGTTTTACGTGTGATAG 59.575 37.037 9.63 3.26 46.79 2.08
4553 8183 8.440059 CAATGTACATGTTTTACGTGTGATAGT 58.560 33.333 9.63 0.00 46.79 2.12
4554 8184 9.642327 AATGTACATGTTTTACGTGTGATAGTA 57.358 29.630 9.63 0.00 46.79 1.82
4555 8185 8.451687 TGTACATGTTTTACGTGTGATAGTAC 57.548 34.615 2.30 4.32 46.79 2.73
4556 8186 8.081025 TGTACATGTTTTACGTGTGATAGTACA 58.919 33.333 2.30 6.89 46.79 2.90
4557 8187 9.079833 GTACATGTTTTACGTGTGATAGTACAT 57.920 33.333 2.30 0.00 46.79 2.29
4558 8188 8.542497 ACATGTTTTACGTGTGATAGTACATT 57.458 30.769 0.00 0.00 45.78 2.71
4559 8189 8.995220 ACATGTTTTACGTGTGATAGTACATTT 58.005 29.630 0.00 0.00 45.78 2.32
4560 8190 9.820229 CATGTTTTACGTGTGATAGTACATTTT 57.180 29.630 0.00 0.00 32.43 1.82
4581 8211 4.881019 TTTTCTGCTCTCTGCTAGTTCT 57.119 40.909 0.00 0.00 43.37 3.01
4582 8212 3.865011 TTCTGCTCTCTGCTAGTTCTG 57.135 47.619 0.00 0.00 43.37 3.02
4583 8213 1.476085 TCTGCTCTCTGCTAGTTCTGC 59.524 52.381 0.00 0.00 43.37 4.26
4584 8214 0.534412 TGCTCTCTGCTAGTTCTGCC 59.466 55.000 0.00 0.00 43.37 4.85
4585 8215 0.527385 GCTCTCTGCTAGTTCTGCCG 60.527 60.000 0.00 0.00 38.95 5.69
4586 8216 0.527385 CTCTCTGCTAGTTCTGCCGC 60.527 60.000 0.00 0.00 0.00 6.53
4587 8217 1.875813 CTCTGCTAGTTCTGCCGCG 60.876 63.158 0.00 0.00 0.00 6.46
4588 8218 3.558411 CTGCTAGTTCTGCCGCGC 61.558 66.667 0.00 0.00 0.00 6.86
4589 8219 4.371590 TGCTAGTTCTGCCGCGCA 62.372 61.111 8.75 1.04 36.92 6.09
4590 8220 3.854459 GCTAGTTCTGCCGCGCAC 61.854 66.667 8.75 0.00 33.79 5.34
4591 8221 2.432456 CTAGTTCTGCCGCGCACA 60.432 61.111 8.75 3.66 33.79 4.57
4592 8222 2.730672 CTAGTTCTGCCGCGCACAC 61.731 63.158 8.75 0.00 33.79 3.82
4593 8223 3.220999 TAGTTCTGCCGCGCACACT 62.221 57.895 8.75 8.03 33.79 3.55
4594 8224 4.374702 GTTCTGCCGCGCACACTG 62.375 66.667 8.75 0.00 33.79 3.66
4609 8239 4.170062 CTGCACGCAGGGCATTCG 62.170 66.667 11.29 0.00 41.06 3.34
4620 8250 4.179579 GCATTCGGCCCAACGCTC 62.180 66.667 0.00 0.00 37.74 5.03
4621 8251 3.508840 CATTCGGCCCAACGCTCC 61.509 66.667 0.00 0.00 37.74 4.70
4622 8252 3.717294 ATTCGGCCCAACGCTCCT 61.717 61.111 0.00 0.00 37.74 3.69
4623 8253 3.682292 ATTCGGCCCAACGCTCCTC 62.682 63.158 0.00 0.00 37.74 3.71
4626 8256 4.785453 GGCCCAACGCTCCTCCAG 62.785 72.222 0.00 0.00 37.74 3.86
4627 8257 3.706373 GCCCAACGCTCCTCCAGA 61.706 66.667 0.00 0.00 0.00 3.86
4628 8258 3.068881 CCCAACGCTCCTCCAGAA 58.931 61.111 0.00 0.00 0.00 3.02
4629 8259 1.376037 CCCAACGCTCCTCCAGAAC 60.376 63.158 0.00 0.00 0.00 3.01
4630 8260 1.376037 CCAACGCTCCTCCAGAACC 60.376 63.158 0.00 0.00 0.00 3.62
4631 8261 1.371183 CAACGCTCCTCCAGAACCA 59.629 57.895 0.00 0.00 0.00 3.67
4632 8262 0.671781 CAACGCTCCTCCAGAACCAG 60.672 60.000 0.00 0.00 0.00 4.00
4633 8263 2.125350 CGCTCCTCCAGAACCAGC 60.125 66.667 0.00 0.00 0.00 4.85
4634 8264 2.270527 GCTCCTCCAGAACCAGCC 59.729 66.667 0.00 0.00 0.00 4.85
4635 8265 2.297129 GCTCCTCCAGAACCAGCCT 61.297 63.158 0.00 0.00 0.00 4.58
4636 8266 1.601171 CTCCTCCAGAACCAGCCTG 59.399 63.158 0.00 0.00 0.00 4.85
4640 8270 4.335647 CCAGAACCAGCCTGGCGT 62.336 66.667 11.63 2.83 43.93 5.68
4641 8271 2.662596 CAGAACCAGCCTGGCGTA 59.337 61.111 11.63 0.00 42.67 4.42
4642 8272 1.221840 CAGAACCAGCCTGGCGTAT 59.778 57.895 11.63 0.63 42.67 3.06
4643 8273 1.091771 CAGAACCAGCCTGGCGTATG 61.092 60.000 11.63 6.21 42.67 2.39
4644 8274 2.438434 AACCAGCCTGGCGTATGC 60.438 61.111 11.63 0.00 42.67 3.14
4645 8275 4.838152 ACCAGCCTGGCGTATGCG 62.838 66.667 11.63 0.00 42.67 4.73
4647 8277 4.529219 CAGCCTGGCGTATGCGGA 62.529 66.667 13.96 0.00 44.10 5.54
4648 8278 4.530857 AGCCTGGCGTATGCGGAC 62.531 66.667 13.96 0.00 44.10 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.393234 TGGTTGTTCATTCTTTAGATGGTTAGG 59.607 37.037 0.00 0.00 0.00 2.69
162 165 2.043939 TCCATGTCTGTACTACTGGGGT 59.956 50.000 0.00 0.00 0.00 4.95
235 250 0.251653 TACTCACCGCCTCCAACTCT 60.252 55.000 0.00 0.00 0.00 3.24
246 261 2.094597 TCATGGGTAACGTTACTCACCG 60.095 50.000 36.50 29.60 46.06 4.94
492 521 1.401018 CCGTTCATTGCCTTTCCGTTC 60.401 52.381 0.00 0.00 0.00 3.95
494 523 1.241315 CCCGTTCATTGCCTTTCCGT 61.241 55.000 0.00 0.00 0.00 4.69
495 524 0.958382 TCCCGTTCATTGCCTTTCCG 60.958 55.000 0.00 0.00 0.00 4.30
510 539 0.811616 CGGCTTCTTCTCCAATCCCG 60.812 60.000 0.00 0.00 0.00 5.14
632 668 4.320456 AGGCACGCACCAGTCCAG 62.320 66.667 0.00 0.00 0.00 3.86
635 671 2.029844 GAAGAGGCACGCACCAGTC 61.030 63.158 0.00 0.00 0.00 3.51
686 730 2.432300 CGGGTAGCGGGGAACAGAT 61.432 63.158 0.00 0.00 0.00 2.90
713 757 1.836383 CGTACTCCTGTGAATACGCC 58.164 55.000 0.00 0.00 34.62 5.68
721 765 2.607187 CTTGGTTAGCGTACTCCTGTG 58.393 52.381 0.00 0.00 0.00 3.66
722 766 1.067071 GCTTGGTTAGCGTACTCCTGT 60.067 52.381 0.00 0.00 40.71 4.00
761 805 1.477553 TGGAACCGGATAGCGTACTT 58.522 50.000 9.46 0.00 0.00 2.24
771 815 1.219664 CGCAGGTATTGGAACCGGA 59.780 57.895 9.46 0.00 44.77 5.14
828 872 1.081774 GAGCCGATCCGACATCTCG 60.082 63.158 0.00 0.00 39.83 4.04
830 874 0.753479 AGTGAGCCGATCCGACATCT 60.753 55.000 0.00 0.00 0.00 2.90
831 875 0.103208 AAGTGAGCCGATCCGACATC 59.897 55.000 0.00 0.00 0.00 3.06
832 876 0.179100 CAAGTGAGCCGATCCGACAT 60.179 55.000 0.00 0.00 0.00 3.06
833 877 1.215382 CAAGTGAGCCGATCCGACA 59.785 57.895 0.00 0.00 0.00 4.35
834 878 0.103208 ATCAAGTGAGCCGATCCGAC 59.897 55.000 0.00 0.00 0.00 4.79
974 1050 4.798682 CCTACCGGGTGGGGAGCT 62.799 72.222 21.14 0.00 46.62 4.09
998 1074 1.519455 CACTCGAGGTTCGGCATCC 60.519 63.158 18.41 0.00 40.88 3.51
1541 1617 7.865889 TGCATACATCAGGATTAGTACTAAACG 59.134 37.037 18.88 8.19 0.00 3.60
1610 1930 6.712179 TGACATTATCATTTAAGCATGGCA 57.288 33.333 0.00 0.00 29.99 4.92
1627 1947 3.982701 CACGCACAAATTCACATGACATT 59.017 39.130 0.00 0.00 0.00 2.71
1679 2149 2.738743 ACCTTTCTATGGTGCCCATTG 58.261 47.619 11.36 9.86 42.23 2.82
1786 2268 8.737175 ACTAGACTCGACAAGACAAATGTAATA 58.263 33.333 0.00 0.00 0.00 0.98
1791 2273 6.153067 AGAACTAGACTCGACAAGACAAATG 58.847 40.000 0.00 0.00 0.00 2.32
1943 4194 3.941483 CCTTAGTCACCTGCCAGTAAATG 59.059 47.826 0.00 0.00 0.00 2.32
2136 4670 3.733443 AGCAACCCAAAGTGTTCAATC 57.267 42.857 0.00 0.00 0.00 2.67
2166 4700 7.361457 GGCTTGCTGCAATTTCAAATTTAGAAT 60.361 33.333 16.38 0.00 45.15 2.40
2324 4858 2.019984 CCTAGAGCCAAAGCCAACATC 58.980 52.381 0.00 0.00 41.25 3.06
2337 4871 4.039730 TCAATCAAGCAGGATACCTAGAGC 59.960 45.833 0.00 0.00 29.64 4.09
2454 4989 8.503458 AGTTTGACCATCTAATCAATCAAGAG 57.497 34.615 0.00 0.00 34.87 2.85
2504 5039 8.543774 CGTAATCTTAAATCCTCTTGACACATC 58.456 37.037 0.00 0.00 0.00 3.06
2513 5048 8.631797 GGAGTAACTCGTAATCTTAAATCCTCT 58.368 37.037 0.00 0.00 0.00 3.69
2514 5049 7.866898 GGGAGTAACTCGTAATCTTAAATCCTC 59.133 40.741 0.00 0.00 0.00 3.71
2516 5051 6.927936 GGGGAGTAACTCGTAATCTTAAATCC 59.072 42.308 0.00 0.00 0.00 3.01
2541 5076 9.284968 CTAATACACCTTATATTTGGGAACAGG 57.715 37.037 0.00 0.00 44.54 4.00
2582 5117 6.391227 ACTTGGTCAAACATAGGAAAGTTG 57.609 37.500 0.00 0.00 0.00 3.16
2589 5124 8.801882 TTCCTATAAACTTGGTCAAACATAGG 57.198 34.615 0.00 0.00 36.60 2.57
2834 5372 3.369471 GGTGAGCACTATAACAGCCTTCA 60.369 47.826 0.16 0.00 0.00 3.02
2918 5528 7.013655 ACAATGAGAAACAGCAAACTACAGATT 59.986 33.333 0.00 0.00 0.00 2.40
2981 5591 9.269453 CACAGAAGAGAATGATATTAGCATCAA 57.731 33.333 0.00 0.00 38.39 2.57
2982 5592 8.645110 TCACAGAAGAGAATGATATTAGCATCA 58.355 33.333 0.00 0.00 39.20 3.07
2986 5596 7.212976 TGGTCACAGAAGAGAATGATATTAGC 58.787 38.462 0.00 0.00 0.00 3.09
2987 5597 9.258826 CTTGGTCACAGAAGAGAATGATATTAG 57.741 37.037 0.00 0.00 0.00 1.73
2988 5598 8.206867 CCTTGGTCACAGAAGAGAATGATATTA 58.793 37.037 0.00 0.00 0.00 0.98
2992 5623 4.533707 TCCTTGGTCACAGAAGAGAATGAT 59.466 41.667 0.00 0.00 0.00 2.45
3070 5702 6.943146 TGCAAATAACCACTGTTACCTAATCA 59.057 34.615 0.00 0.00 39.66 2.57
3188 6735 9.719355 GAAACATCAAAACCCTAAACCATAATT 57.281 29.630 0.00 0.00 0.00 1.40
3249 6796 3.265995 GGTCCTATCCCAAGGAGAAACAA 59.734 47.826 0.00 0.00 46.40 2.83
3379 6926 7.952671 AGATGTAGAAGAATTATTAGACGCCA 58.047 34.615 0.00 0.00 0.00 5.69
3381 6928 9.685828 AAGAGATGTAGAAGAATTATTAGACGC 57.314 33.333 0.00 0.00 0.00 5.19
3780 7354 2.356665 TCAAAGTAAAGCCCAGCACA 57.643 45.000 0.00 0.00 0.00 4.57
3821 7395 7.736447 AACTATGTTTCACTCCAAAGAGAAG 57.264 36.000 0.00 0.00 43.39 2.85
3839 7416 9.567848 ACACTTGTTTAGAACAACAAAACTATG 57.432 29.630 2.34 0.00 45.79 2.23
3897 7474 2.605257 CATTATGGGACGGAGGGAGTA 58.395 52.381 0.00 0.00 0.00 2.59
3898 7475 1.424638 CATTATGGGACGGAGGGAGT 58.575 55.000 0.00 0.00 0.00 3.85
3899 7476 0.035458 GCATTATGGGACGGAGGGAG 59.965 60.000 0.00 0.00 0.00 4.30
3900 7477 0.692756 TGCATTATGGGACGGAGGGA 60.693 55.000 0.00 0.00 0.00 4.20
3901 7478 0.182537 TTGCATTATGGGACGGAGGG 59.817 55.000 0.00 0.00 0.00 4.30
3902 7479 1.140852 TCTTGCATTATGGGACGGAGG 59.859 52.381 0.00 0.00 0.00 4.30
3903 7480 2.213499 GTCTTGCATTATGGGACGGAG 58.787 52.381 0.00 0.00 0.00 4.63
3904 7481 1.472552 CGTCTTGCATTATGGGACGGA 60.473 52.381 0.00 0.00 43.69 4.69
3905 7482 0.937304 CGTCTTGCATTATGGGACGG 59.063 55.000 0.00 0.00 43.69 4.79
3907 7484 4.434713 AAAACGTCTTGCATTATGGGAC 57.565 40.909 0.00 0.00 0.00 4.46
3926 7503 7.228906 TCCCATACTGTAAAATCGTGTCAAAAA 59.771 33.333 0.00 0.00 0.00 1.94
3927 7504 6.711194 TCCCATACTGTAAAATCGTGTCAAAA 59.289 34.615 0.00 0.00 0.00 2.44
3928 7505 6.148150 GTCCCATACTGTAAAATCGTGTCAAA 59.852 38.462 0.00 0.00 0.00 2.69
3929 7506 5.640357 GTCCCATACTGTAAAATCGTGTCAA 59.360 40.000 0.00 0.00 0.00 3.18
3930 7507 5.172934 GTCCCATACTGTAAAATCGTGTCA 58.827 41.667 0.00 0.00 0.00 3.58
3931 7508 4.266976 CGTCCCATACTGTAAAATCGTGTC 59.733 45.833 0.00 0.00 0.00 3.67
3932 7509 4.178540 CGTCCCATACTGTAAAATCGTGT 58.821 43.478 0.00 0.00 0.00 4.49
3933 7510 3.554324 CCGTCCCATACTGTAAAATCGTG 59.446 47.826 0.00 0.00 0.00 4.35
3934 7511 3.448301 TCCGTCCCATACTGTAAAATCGT 59.552 43.478 0.00 0.00 0.00 3.73
3935 7512 4.049186 CTCCGTCCCATACTGTAAAATCG 58.951 47.826 0.00 0.00 0.00 3.34
3936 7513 4.377897 CCTCCGTCCCATACTGTAAAATC 58.622 47.826 0.00 0.00 0.00 2.17
3937 7514 3.135895 CCCTCCGTCCCATACTGTAAAAT 59.864 47.826 0.00 0.00 0.00 1.82
3938 7515 2.502538 CCCTCCGTCCCATACTGTAAAA 59.497 50.000 0.00 0.00 0.00 1.52
3939 7516 2.112998 CCCTCCGTCCCATACTGTAAA 58.887 52.381 0.00 0.00 0.00 2.01
3940 7517 1.288633 TCCCTCCGTCCCATACTGTAA 59.711 52.381 0.00 0.00 0.00 2.41
3941 7518 0.928505 TCCCTCCGTCCCATACTGTA 59.071 55.000 0.00 0.00 0.00 2.74
3942 7519 0.397254 CTCCCTCCGTCCCATACTGT 60.397 60.000 0.00 0.00 0.00 3.55
3943 7520 0.397254 ACTCCCTCCGTCCCATACTG 60.397 60.000 0.00 0.00 0.00 2.74
3944 7521 1.229131 TACTCCCTCCGTCCCATACT 58.771 55.000 0.00 0.00 0.00 2.12
3945 7522 2.169330 GATACTCCCTCCGTCCCATAC 58.831 57.143 0.00 0.00 0.00 2.39
3946 7523 1.784593 TGATACTCCCTCCGTCCCATA 59.215 52.381 0.00 0.00 0.00 2.74
3947 7524 0.561184 TGATACTCCCTCCGTCCCAT 59.439 55.000 0.00 0.00 0.00 4.00
3948 7525 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
3949 7526 0.751452 GTTGATACTCCCTCCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
3950 7527 1.409427 CTGTTGATACTCCCTCCGTCC 59.591 57.143 0.00 0.00 0.00 4.79
3951 7528 1.409427 CCTGTTGATACTCCCTCCGTC 59.591 57.143 0.00 0.00 0.00 4.79
3952 7529 1.273098 ACCTGTTGATACTCCCTCCGT 60.273 52.381 0.00 0.00 0.00 4.69
3953 7530 1.137086 CACCTGTTGATACTCCCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
3954 7531 2.188817 ACACCTGTTGATACTCCCTCC 58.811 52.381 0.00 0.00 0.00 4.30
3955 7532 3.983044 AACACCTGTTGATACTCCCTC 57.017 47.619 0.00 0.00 36.80 4.30
3956 7533 4.724279 AAAACACCTGTTGATACTCCCT 57.276 40.909 0.00 0.00 38.44 4.20
3957 7534 5.070685 AGAAAAACACCTGTTGATACTCCC 58.929 41.667 0.00 0.00 38.44 4.30
3958 7535 6.635030 AAGAAAAACACCTGTTGATACTCC 57.365 37.500 0.00 0.00 38.44 3.85
3959 7536 7.139392 GGAAAGAAAAACACCTGTTGATACTC 58.861 38.462 0.00 0.00 38.44 2.59
3960 7537 6.605594 TGGAAAGAAAAACACCTGTTGATACT 59.394 34.615 0.00 0.00 38.44 2.12
3961 7538 6.801575 TGGAAAGAAAAACACCTGTTGATAC 58.198 36.000 0.00 0.00 38.44 2.24
4014 7591 1.226888 GATCGTGTGGGCGGAGTAC 60.227 63.158 0.00 0.00 0.00 2.73
4015 7592 2.420568 GGATCGTGTGGGCGGAGTA 61.421 63.158 0.00 0.00 0.00 2.59
4017 7594 3.723235 CTGGATCGTGTGGGCGGAG 62.723 68.421 0.00 0.00 0.00 4.63
4018 7595 3.770040 CTGGATCGTGTGGGCGGA 61.770 66.667 0.00 0.00 0.00 5.54
4019 7596 2.717044 TACTGGATCGTGTGGGCGG 61.717 63.158 0.27 0.00 0.00 6.13
4020 7597 1.518572 GTACTGGATCGTGTGGGCG 60.519 63.158 0.27 0.00 0.00 6.13
4021 7598 0.249398 AAGTACTGGATCGTGTGGGC 59.751 55.000 0.00 0.00 0.00 5.36
4022 7599 2.289444 ACAAAGTACTGGATCGTGTGGG 60.289 50.000 0.00 0.00 0.00 4.61
4023 7600 2.736721 CACAAAGTACTGGATCGTGTGG 59.263 50.000 0.00 0.00 33.04 4.17
4025 7602 3.746045 ACACAAAGTACTGGATCGTGT 57.254 42.857 0.00 3.31 0.00 4.49
4027 7604 4.448210 ACAAACACAAAGTACTGGATCGT 58.552 39.130 0.00 0.00 0.00 3.73
4028 7605 5.418310 AACAAACACAAAGTACTGGATCG 57.582 39.130 0.00 0.00 0.00 3.69
4029 7606 8.349983 ACAATAACAAACACAAAGTACTGGATC 58.650 33.333 0.00 0.00 0.00 3.36
4030 7607 8.134895 CACAATAACAAACACAAAGTACTGGAT 58.865 33.333 0.00 0.00 0.00 3.41
4031 7608 7.121463 ACACAATAACAAACACAAAGTACTGGA 59.879 33.333 0.00 0.00 0.00 3.86
4035 7612 8.917655 ACAAACACAATAACAAACACAAAGTAC 58.082 29.630 0.00 0.00 0.00 2.73
4037 7614 7.954788 ACAAACACAATAACAAACACAAAGT 57.045 28.000 0.00 0.00 0.00 2.66
4055 7632 2.364970 CCCCATCAGAAGCAAACAAACA 59.635 45.455 0.00 0.00 0.00 2.83
4056 7633 2.627699 TCCCCATCAGAAGCAAACAAAC 59.372 45.455 0.00 0.00 0.00 2.93
4057 7634 2.956132 TCCCCATCAGAAGCAAACAAA 58.044 42.857 0.00 0.00 0.00 2.83
4058 7635 2.673775 TCCCCATCAGAAGCAAACAA 57.326 45.000 0.00 0.00 0.00 2.83
4060 7637 1.672881 CGATCCCCATCAGAAGCAAAC 59.327 52.381 0.00 0.00 0.00 2.93
4101 7729 1.451747 GACTACGAGGGAGAGGCGT 60.452 63.158 0.00 0.00 41.58 5.68
4102 7730 0.820074 ATGACTACGAGGGAGAGGCG 60.820 60.000 0.00 0.00 0.00 5.52
4117 7745 1.002087 ACAGAACCCTTCGGTGATGAC 59.998 52.381 0.00 0.00 43.71 3.06
4122 7750 2.536761 TGTTACAGAACCCTTCGGTG 57.463 50.000 0.00 0.00 43.71 4.94
4126 7754 2.629051 CGGGATGTTACAGAACCCTTC 58.371 52.381 17.69 0.00 38.51 3.46
4130 7758 0.906775 TCCCGGGATGTTACAGAACC 59.093 55.000 22.63 0.00 34.38 3.62
4165 7793 6.763135 TGCACAAACAATATAACAGGCAAAAA 59.237 30.769 0.00 0.00 0.00 1.94
4174 7802 7.970061 AGACACATGATGCACAAACAATATAAC 59.030 33.333 0.00 0.00 0.00 1.89
4248 7878 8.958506 CGACTAGCATCCTTATAGTTATAGGTT 58.041 37.037 0.00 0.00 30.04 3.50
4249 7879 8.327271 TCGACTAGCATCCTTATAGTTATAGGT 58.673 37.037 0.00 0.00 30.04 3.08
4250 7880 8.614346 GTCGACTAGCATCCTTATAGTTATAGG 58.386 40.741 8.70 0.00 30.04 2.57
4251 7881 8.614346 GGTCGACTAGCATCCTTATAGTTATAG 58.386 40.741 16.46 0.00 30.04 1.31
4252 7882 7.555554 GGGTCGACTAGCATCCTTATAGTTATA 59.444 40.741 16.46 0.00 30.04 0.98
4253 7883 6.377712 GGGTCGACTAGCATCCTTATAGTTAT 59.622 42.308 16.46 0.00 30.04 1.89
4254 7884 5.709164 GGGTCGACTAGCATCCTTATAGTTA 59.291 44.000 16.46 0.00 30.04 2.24
4255 7885 4.523558 GGGTCGACTAGCATCCTTATAGTT 59.476 45.833 16.46 0.00 30.04 2.24
4256 7886 4.080687 GGGTCGACTAGCATCCTTATAGT 58.919 47.826 16.46 0.00 32.53 2.12
4257 7887 4.337145 AGGGTCGACTAGCATCCTTATAG 58.663 47.826 16.46 0.00 0.00 1.31
4258 7888 4.333690 GAGGGTCGACTAGCATCCTTATA 58.666 47.826 16.46 0.00 30.28 0.98
4259 7889 3.158676 GAGGGTCGACTAGCATCCTTAT 58.841 50.000 16.46 0.00 30.28 1.73
4260 7890 2.584236 GAGGGTCGACTAGCATCCTTA 58.416 52.381 16.46 0.00 30.28 2.69
4261 7891 1.404843 GAGGGTCGACTAGCATCCTT 58.595 55.000 16.46 0.00 30.28 3.36
4262 7892 3.119225 GAGGGTCGACTAGCATCCT 57.881 57.895 16.46 12.00 30.28 3.24
4264 7894 0.955905 GAGGAGGGTCGACTAGCATC 59.044 60.000 16.46 5.97 35.69 3.91
4265 7895 0.468400 GGAGGAGGGTCGACTAGCAT 60.468 60.000 16.46 2.16 0.00 3.79
4266 7896 1.076923 GGAGGAGGGTCGACTAGCA 60.077 63.158 16.46 0.00 0.00 3.49
4267 7897 1.076923 TGGAGGAGGGTCGACTAGC 60.077 63.158 16.46 4.59 0.00 3.42
4268 7898 1.096386 CGTGGAGGAGGGTCGACTAG 61.096 65.000 16.46 0.00 0.00 2.57
4269 7899 1.077930 CGTGGAGGAGGGTCGACTA 60.078 63.158 16.46 0.00 0.00 2.59
4270 7900 2.361357 CGTGGAGGAGGGTCGACT 60.361 66.667 16.46 0.00 0.00 4.18
4271 7901 3.450115 CCGTGGAGGAGGGTCGAC 61.450 72.222 7.13 7.13 45.00 4.20
4272 7902 4.753662 CCCGTGGAGGAGGGTCGA 62.754 72.222 0.00 0.00 45.00 4.20
4277 7907 0.546598 AAAATAGCCCGTGGAGGAGG 59.453 55.000 0.00 0.00 45.00 4.30
4278 7908 2.420058 AAAAATAGCCCGTGGAGGAG 57.580 50.000 0.00 0.00 45.00 3.69
4323 7953 9.278978 ACAAAGGGCGTAATATTTTTGAAAATT 57.721 25.926 12.67 0.00 39.24 1.82
4324 7954 8.840833 ACAAAGGGCGTAATATTTTTGAAAAT 57.159 26.923 12.67 6.88 41.24 1.82
4325 7955 8.664211 AACAAAGGGCGTAATATTTTTGAAAA 57.336 26.923 12.67 0.00 31.79 2.29
4326 7956 8.664211 AAACAAAGGGCGTAATATTTTTGAAA 57.336 26.923 12.67 0.00 31.79 2.69
4327 7957 8.664211 AAAACAAAGGGCGTAATATTTTTGAA 57.336 26.923 12.67 0.00 31.79 2.69
4328 7958 9.930693 ATAAAACAAAGGGCGTAATATTTTTGA 57.069 25.926 12.67 0.00 31.79 2.69
4353 7983 9.855021 AGCTGACGCTGTAATATTTTTAAAAAT 57.145 25.926 25.18 25.18 46.86 1.82
4371 8001 0.806492 GGCCTGTAGTAAGCTGACGC 60.806 60.000 0.00 0.00 0.00 5.19
4372 8002 0.525668 CGGCCTGTAGTAAGCTGACG 60.526 60.000 0.00 0.00 34.73 4.35
4373 8003 0.815734 TCGGCCTGTAGTAAGCTGAC 59.184 55.000 0.00 0.00 37.00 3.51
4374 8004 0.815734 GTCGGCCTGTAGTAAGCTGA 59.184 55.000 0.00 0.00 39.54 4.26
4375 8005 0.530744 TGTCGGCCTGTAGTAAGCTG 59.469 55.000 0.00 0.00 0.00 4.24
4376 8006 0.818296 CTGTCGGCCTGTAGTAAGCT 59.182 55.000 0.00 0.00 0.00 3.74
4377 8007 0.179108 CCTGTCGGCCTGTAGTAAGC 60.179 60.000 0.00 0.00 0.00 3.09
4378 8008 1.405821 CTCCTGTCGGCCTGTAGTAAG 59.594 57.143 0.00 0.00 0.00 2.34
4379 8009 1.471119 CTCCTGTCGGCCTGTAGTAA 58.529 55.000 0.00 0.00 0.00 2.24
4380 8010 1.035932 GCTCCTGTCGGCCTGTAGTA 61.036 60.000 0.00 0.00 0.00 1.82
4381 8011 2.352032 GCTCCTGTCGGCCTGTAGT 61.352 63.158 0.00 0.00 0.00 2.73
4382 8012 2.496817 GCTCCTGTCGGCCTGTAG 59.503 66.667 0.00 0.00 0.00 2.74
4383 8013 3.075005 GGCTCCTGTCGGCCTGTA 61.075 66.667 0.00 0.00 44.48 2.74
4388 8018 3.655810 CTGACTGGCTCCTGTCGGC 62.656 68.421 17.85 0.50 44.40 5.54
4389 8019 2.575993 CTGACTGGCTCCTGTCGG 59.424 66.667 16.78 16.78 44.40 4.79
4390 8020 2.125753 GCTGACTGGCTCCTGTCG 60.126 66.667 17.32 13.76 44.40 4.35
4391 8021 2.267324 GGCTGACTGGCTCCTGTC 59.733 66.667 16.15 16.15 42.65 3.51
4406 8036 1.067495 CCTAATCGGCTAGCAGTAGGC 60.067 57.143 18.24 0.00 46.22 3.93
4407 8037 1.546476 CCCTAATCGGCTAGCAGTAGG 59.454 57.143 18.24 18.55 0.00 3.18
4408 8038 2.229302 GACCCTAATCGGCTAGCAGTAG 59.771 54.545 18.24 10.86 0.00 2.57
4409 8039 2.236766 GACCCTAATCGGCTAGCAGTA 58.763 52.381 18.24 3.28 0.00 2.74
4410 8040 1.041437 GACCCTAATCGGCTAGCAGT 58.959 55.000 18.24 0.00 0.00 4.40
4411 8041 0.318762 GGACCCTAATCGGCTAGCAG 59.681 60.000 18.24 13.50 0.00 4.24
4412 8042 0.397957 TGGACCCTAATCGGCTAGCA 60.398 55.000 18.24 0.00 0.00 3.49
4413 8043 0.318762 CTGGACCCTAATCGGCTAGC 59.681 60.000 6.04 6.04 0.00 3.42
4414 8044 1.614413 GACTGGACCCTAATCGGCTAG 59.386 57.143 0.00 0.00 0.00 3.42
4415 8045 1.700955 GACTGGACCCTAATCGGCTA 58.299 55.000 0.00 0.00 0.00 3.93
4416 8046 1.392710 CGACTGGACCCTAATCGGCT 61.393 60.000 0.00 0.00 0.00 5.52
4417 8047 1.067582 CGACTGGACCCTAATCGGC 59.932 63.158 0.00 0.00 0.00 5.54
4418 8048 1.740285 CCGACTGGACCCTAATCGG 59.260 63.158 8.03 8.03 45.61 4.18
4419 8049 1.067582 GCCGACTGGACCCTAATCG 59.932 63.158 0.00 0.00 37.49 3.34
4420 8050 1.446366 GGCCGACTGGACCCTAATC 59.554 63.158 0.00 0.00 37.27 1.75
4421 8051 3.643398 GGCCGACTGGACCCTAAT 58.357 61.111 0.00 0.00 37.27 1.73
4442 8072 2.124278 GGACCCAATCGGCTTCCC 60.124 66.667 0.00 0.00 33.26 3.97
4443 8073 1.452108 CTGGACCCAATCGGCTTCC 60.452 63.158 0.00 0.00 34.73 3.46
4444 8074 0.744771 GACTGGACCCAATCGGCTTC 60.745 60.000 0.00 0.00 33.26 3.86
4445 8075 1.299976 GACTGGACCCAATCGGCTT 59.700 57.895 0.00 0.00 33.26 4.35
4446 8076 2.990479 GACTGGACCCAATCGGCT 59.010 61.111 0.00 0.00 33.26 5.52
4447 8077 2.511600 CGACTGGACCCAATCGGC 60.512 66.667 11.58 0.00 41.20 5.54
4449 8079 2.511600 GCCGACTGGACCCAATCG 60.512 66.667 12.36 12.36 43.95 3.34
4450 8080 0.744771 GAAGCCGACTGGACCCAATC 60.745 60.000 0.00 0.00 37.49 2.67
4451 8081 1.299976 GAAGCCGACTGGACCCAAT 59.700 57.895 0.00 0.00 37.49 3.16
4452 8082 2.747686 GAAGCCGACTGGACCCAA 59.252 61.111 0.00 0.00 37.49 4.12
4453 8083 3.319198 GGAAGCCGACTGGACCCA 61.319 66.667 0.00 0.00 37.49 4.51
4454 8084 3.003763 AGGAAGCCGACTGGACCC 61.004 66.667 0.00 0.00 37.49 4.46
4455 8085 1.255667 TACAGGAAGCCGACTGGACC 61.256 60.000 0.00 0.00 39.00 4.46
4456 8086 0.606604 TTACAGGAAGCCGACTGGAC 59.393 55.000 0.00 0.00 39.00 4.02
4457 8087 0.895530 CTTACAGGAAGCCGACTGGA 59.104 55.000 0.00 0.00 39.00 3.86
4458 8088 3.442996 CTTACAGGAAGCCGACTGG 57.557 57.895 0.00 0.00 39.00 4.00
4467 8097 9.692749 CGATTAGTATTAATCAGCTTACAGGAA 57.307 33.333 15.76 0.00 43.49 3.36
4468 8098 8.304596 CCGATTAGTATTAATCAGCTTACAGGA 58.695 37.037 15.76 0.00 43.49 3.86
4469 8099 7.063544 GCCGATTAGTATTAATCAGCTTACAGG 59.936 40.741 15.36 8.55 42.48 4.00
4470 8100 7.954447 GCCGATTAGTATTAATCAGCTTACAG 58.046 38.462 15.36 0.72 42.48 2.74
4471 8101 7.884816 GCCGATTAGTATTAATCAGCTTACA 57.115 36.000 15.36 0.00 42.48 2.41
4476 8106 6.100004 TGCTAGCCGATTAGTATTAATCAGC 58.900 40.000 13.29 15.00 44.53 4.26
4477 8107 7.316640 ACTGCTAGCCGATTAGTATTAATCAG 58.683 38.462 13.29 7.57 43.49 2.90
4478 8108 7.228314 ACTGCTAGCCGATTAGTATTAATCA 57.772 36.000 13.29 0.00 43.49 2.57
4479 8109 7.063544 CCAACTGCTAGCCGATTAGTATTAATC 59.936 40.741 13.29 7.70 41.08 1.75
4480 8110 6.874134 CCAACTGCTAGCCGATTAGTATTAAT 59.126 38.462 13.29 0.00 32.19 1.40
4481 8111 6.220930 CCAACTGCTAGCCGATTAGTATTAA 58.779 40.000 13.29 0.00 0.00 1.40
4482 8112 5.779922 CCAACTGCTAGCCGATTAGTATTA 58.220 41.667 13.29 0.00 0.00 0.98
4483 8113 4.632153 CCAACTGCTAGCCGATTAGTATT 58.368 43.478 13.29 0.00 0.00 1.89
4484 8114 3.555168 GCCAACTGCTAGCCGATTAGTAT 60.555 47.826 13.29 0.00 36.87 2.12
4485 8115 2.223971 GCCAACTGCTAGCCGATTAGTA 60.224 50.000 13.29 0.00 36.87 1.82
4486 8116 1.473434 GCCAACTGCTAGCCGATTAGT 60.473 52.381 13.29 5.47 36.87 2.24
4487 8117 1.221414 GCCAACTGCTAGCCGATTAG 58.779 55.000 13.29 4.75 36.87 1.73
4488 8118 3.379650 GCCAACTGCTAGCCGATTA 57.620 52.632 13.29 0.00 36.87 1.75
4489 8119 4.225497 GCCAACTGCTAGCCGATT 57.775 55.556 13.29 0.43 36.87 3.34
4498 8128 2.912624 GCACCAGTCAGCCAACTGC 61.913 63.158 9.95 0.00 44.34 4.40
4499 8129 0.892358 ATGCACCAGTCAGCCAACTG 60.892 55.000 8.72 8.72 45.10 3.16
4500 8130 0.892358 CATGCACCAGTCAGCCAACT 60.892 55.000 0.00 0.00 0.00 3.16
4501 8131 1.582968 CATGCACCAGTCAGCCAAC 59.417 57.895 0.00 0.00 0.00 3.77
4502 8132 1.604308 CCATGCACCAGTCAGCCAA 60.604 57.895 0.00 0.00 0.00 4.52
4503 8133 2.034532 CCATGCACCAGTCAGCCA 59.965 61.111 0.00 0.00 0.00 4.75
4504 8134 3.446570 GCCATGCACCAGTCAGCC 61.447 66.667 0.00 0.00 0.00 4.85
4505 8135 3.446570 GGCCATGCACCAGTCAGC 61.447 66.667 0.00 0.00 0.00 4.26
4506 8136 2.753043 GGGCCATGCACCAGTCAG 60.753 66.667 4.39 0.00 0.00 3.51
4507 8137 2.921500 ATGGGCCATGCACCAGTCA 61.921 57.895 20.49 0.00 40.67 3.41
4508 8138 2.043652 ATGGGCCATGCACCAGTC 60.044 61.111 20.49 0.00 40.67 3.51
4509 8139 2.363276 CATGGGCCATGCACCAGT 60.363 61.111 31.96 0.00 40.67 4.00
4516 8146 1.112950 TGTACATTGCATGGGCCATG 58.887 50.000 36.69 36.69 45.87 3.66
4517 8147 1.689813 CATGTACATTGCATGGGCCAT 59.310 47.619 14.78 14.78 39.82 4.40
4518 8148 1.112950 CATGTACATTGCATGGGCCA 58.887 50.000 9.61 9.61 39.82 5.36
4519 8149 1.113788 ACATGTACATTGCATGGGCC 58.886 50.000 5.37 0.00 45.68 5.80
4520 8150 2.965572 AACATGTACATTGCATGGGC 57.034 45.000 5.37 0.00 45.68 5.36
4521 8151 4.797868 CGTAAAACATGTACATTGCATGGG 59.202 41.667 5.37 0.00 45.68 4.00
4522 8152 5.285845 CACGTAAAACATGTACATTGCATGG 59.714 40.000 5.37 0.00 45.68 3.66
4523 8153 5.855925 ACACGTAAAACATGTACATTGCATG 59.144 36.000 5.37 0.00 46.51 4.06
4524 8154 5.855925 CACACGTAAAACATGTACATTGCAT 59.144 36.000 5.37 0.00 0.00 3.96
4525 8155 5.007724 TCACACGTAAAACATGTACATTGCA 59.992 36.000 5.37 0.00 0.00 4.08
4526 8156 5.444983 TCACACGTAAAACATGTACATTGC 58.555 37.500 5.37 0.00 0.00 3.56
4527 8157 8.440059 ACTATCACACGTAAAACATGTACATTG 58.560 33.333 5.37 4.77 0.00 2.82
4528 8158 8.542497 ACTATCACACGTAAAACATGTACATT 57.458 30.769 5.37 0.00 0.00 2.71
4529 8159 9.079833 GTACTATCACACGTAAAACATGTACAT 57.920 33.333 1.41 1.41 0.00 2.29
4530 8160 8.081025 TGTACTATCACACGTAAAACATGTACA 58.919 33.333 0.00 0.00 34.86 2.90
4531 8161 8.451687 TGTACTATCACACGTAAAACATGTAC 57.548 34.615 0.00 0.00 0.00 2.90
4532 8162 9.642327 AATGTACTATCACACGTAAAACATGTA 57.358 29.630 0.00 0.00 0.00 2.29
4533 8163 8.542497 AATGTACTATCACACGTAAAACATGT 57.458 30.769 0.00 0.00 0.00 3.21
4534 8164 9.820229 AAAATGTACTATCACACGTAAAACATG 57.180 29.630 0.00 0.00 0.00 3.21
4566 8196 0.527385 CGGCAGAACTAGCAGAGAGC 60.527 60.000 0.00 0.00 46.19 4.09
4567 8197 0.527385 GCGGCAGAACTAGCAGAGAG 60.527 60.000 0.00 0.00 0.00 3.20
4568 8198 1.513158 GCGGCAGAACTAGCAGAGA 59.487 57.895 0.00 0.00 0.00 3.10
4569 8199 1.875813 CGCGGCAGAACTAGCAGAG 60.876 63.158 0.00 0.00 0.00 3.35
4570 8200 2.181777 CGCGGCAGAACTAGCAGA 59.818 61.111 0.00 0.00 0.00 4.26
4571 8201 3.558411 GCGCGGCAGAACTAGCAG 61.558 66.667 8.83 0.00 0.00 4.24
4572 8202 4.371590 TGCGCGGCAGAACTAGCA 62.372 61.111 8.83 0.00 33.32 3.49
4573 8203 3.854459 GTGCGCGGCAGAACTAGC 61.854 66.667 8.83 0.00 40.08 3.42
4574 8204 2.432456 TGTGCGCGGCAGAACTAG 60.432 61.111 8.83 0.00 40.08 2.57
4575 8205 2.736995 GTGTGCGCGGCAGAACTA 60.737 61.111 8.83 0.00 40.08 2.24
4576 8206 4.609018 AGTGTGCGCGGCAGAACT 62.609 61.111 8.83 10.15 40.08 3.01
4577 8207 4.374702 CAGTGTGCGCGGCAGAAC 62.375 66.667 8.83 8.05 40.08 3.01
4589 8219 4.648626 ATGCCCTGCGTGCAGTGT 62.649 61.111 19.58 1.08 42.92 3.55
4590 8220 3.332493 GAATGCCCTGCGTGCAGTG 62.332 63.158 19.58 10.41 42.92 3.66
4591 8221 3.058160 GAATGCCCTGCGTGCAGT 61.058 61.111 19.58 1.39 42.92 4.40
4592 8222 4.170062 CGAATGCCCTGCGTGCAG 62.170 66.667 14.82 14.82 42.92 4.41
4603 8233 4.179579 GAGCGTTGGGCCGAATGC 62.180 66.667 31.00 31.00 45.17 3.56
4604 8234 3.508840 GGAGCGTTGGGCCGAATG 61.509 66.667 14.92 14.92 45.17 2.67
4605 8235 3.682292 GAGGAGCGTTGGGCCGAAT 62.682 63.158 2.57 0.00 45.17 3.34
4606 8236 4.388499 GAGGAGCGTTGGGCCGAA 62.388 66.667 0.00 0.00 45.17 4.30
4609 8239 4.785453 CTGGAGGAGCGTTGGGCC 62.785 72.222 0.00 0.00 45.17 5.80
4610 8240 3.254024 TTCTGGAGGAGCGTTGGGC 62.254 63.158 0.00 0.00 44.05 5.36
4611 8241 1.376037 GTTCTGGAGGAGCGTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
4612 8242 1.376037 GGTTCTGGAGGAGCGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
4613 8243 0.671781 CTGGTTCTGGAGGAGCGTTG 60.672 60.000 0.00 0.00 0.00 4.10
4614 8244 1.674057 CTGGTTCTGGAGGAGCGTT 59.326 57.895 0.00 0.00 0.00 4.84
4615 8245 2.948720 GCTGGTTCTGGAGGAGCGT 61.949 63.158 0.00 0.00 0.00 5.07
4616 8246 2.125350 GCTGGTTCTGGAGGAGCG 60.125 66.667 0.00 0.00 0.00 5.03
4617 8247 2.270527 GGCTGGTTCTGGAGGAGC 59.729 66.667 0.00 0.00 0.00 4.70
4618 8248 1.601171 CAGGCTGGTTCTGGAGGAG 59.399 63.158 6.61 0.00 0.00 3.69
4619 8249 3.811702 CAGGCTGGTTCTGGAGGA 58.188 61.111 6.61 0.00 0.00 3.71
4624 8254 1.091771 CATACGCCAGGCTGGTTCTG 61.092 60.000 32.80 21.96 40.46 3.02
4625 8255 1.221840 CATACGCCAGGCTGGTTCT 59.778 57.895 32.80 18.20 40.46 3.01
4626 8256 2.472909 GCATACGCCAGGCTGGTTC 61.473 63.158 32.80 17.41 40.46 3.62
4627 8257 2.438434 GCATACGCCAGGCTGGTT 60.438 61.111 32.80 22.57 40.46 3.67
4628 8258 4.838152 CGCATACGCCAGGCTGGT 62.838 66.667 32.80 18.04 40.46 4.00
4630 8260 4.529219 TCCGCATACGCCAGGCTG 62.529 66.667 10.54 7.75 38.22 4.85
4631 8261 4.530857 GTCCGCATACGCCAGGCT 62.531 66.667 10.54 0.00 38.22 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.