AutoCloner

Multiple sequence alignment - TraesCS4B01G190700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G190700	chr4B	100.000	3781	0	0	1	3781	413449932	413446152	0.000000e+00	6983
1	TraesCS4B01G190700	chr4A	92.780	2964	162	25	1	2940	137539358	137542293	0.000000e+00	4241
2	TraesCS4B01G190700	chr4A	94.118	493	15	2	3289	3781	137544741	137545219	0.000000e+00	737
3	TraesCS4B01G190700	chr4A	91.026	390	23	8	2916	3293	137542469	137542858	2.010000e-142	516
4	TraesCS4B01G190700	chr4D	92.446	1562	103	8	1	1556	335336855	335335303	0.000000e+00	2217
5	TraesCS4B01G190700	chr4D	96.233	1168	38	4	1771	2938	335335132	335333971	0.000000e+00	1908
6	TraesCS4B01G190700	chr4D	92.944	737	27	3	3056	3781	335315743	335315021	0.000000e+00	1050
7	TraesCS4B01G190700	chr4D	96.850	127	4	0	2934	3060	335315948	335315822	2.960000e-51	213
8	TraesCS4B01G190700	chr4D	93.636	110	7	0	1563	1672	335335260	335335151	8.400000e-37	165
9	TraesCS4B01G190700	chr7B	91.725	858	67	2	1	854	124326422	124327279	0.000000e+00	1188
10	TraesCS4B01G190700	chr7A	90.909	858	73	3	1	854	722260836	722261692	0.000000e+00	1147
11	TraesCS4B01G190700	chr6A	90.024	822	77	3	37	854	140030592	140031412	0.000000e+00	1059
12	TraesCS4B01G190700	chr6A	90.024	822	77	3	37	854	140052734	140053554	0.000000e+00	1059
13	TraesCS4B01G190700	chr6A	77.556	753	163	5	105	852	607851129	607851880	2.070000e-122	449
14	TraesCS4B01G190700	chr1D	85.425	741	104	4	1902	2642	203536261	203535525	0.000000e+00	767
15	TraesCS4B01G190700	chr1D	82.415	381	51	9	1015	1387	203537046	203536674	6.090000e-83	318
16	TraesCS4B01G190700	chr1D	82.143	252	38	5	2650	2899	203535247	203535001	3.830000e-50	209
17	TraesCS4B01G190700	chr1D	77.713	341	53	14	1482	1807	203536577	203536245	1.790000e-43	187
18	TraesCS4B01G190700	chr1A	85.322	729	105	2	1902	2630	258180765	258180039	0.000000e+00	752
19	TraesCS4B01G190700	chr1A	84.091	352	42	12	1043	1387	258181473	258181129	1.010000e-85	327
20	TraesCS4B01G190700	chr1A	80.524	267	42	7	2635	2899	258179775	258179517	2.980000e-46	196
21	TraesCS4B01G190700	chr1B	85.052	582	76	6	1902	2481	297477528	297476956	1.960000e-162	582
22	TraesCS4B01G190700	chr1B	81.143	175	25	6	1215	1387	297480459	297480291	2.370000e-27	134
23	TraesCS4B01G190700	chr5A	77.822	753	161	5	105	852	648189534	648188783	9.570000e-126	460
24	TraesCS4B01G190700	chr7D	77.351	755	164	6	103	852	380168734	380169486	1.250000e-119	440

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G190700	chr4B	413446152	413449932	3780	True	6983.000000	6983	100.000000	1	3781	1	chr4B.!!$R1	3780
1	TraesCS4B01G190700	chr4A	137539358	137545219	5861	False	1831.333333	4241	92.641333	1	3781	3	chr4A.!!$F1	3780
2	TraesCS4B01G190700	chr4D	335333971	335336855	2884	True	1430.000000	2217	94.105000	1	2938	3	chr4D.!!$R2	2937
3	TraesCS4B01G190700	chr4D	335315021	335315948	927	True	631.500000	1050	94.897000	2934	3781	2	chr4D.!!$R1	847
4	TraesCS4B01G190700	chr7B	124326422	124327279	857	False	1188.000000	1188	91.725000	1	854	1	chr7B.!!$F1	853
5	TraesCS4B01G190700	chr7A	722260836	722261692	856	False	1147.000000	1147	90.909000	1	854	1	chr7A.!!$F1	853
6	TraesCS4B01G190700	chr6A	140030592	140031412	820	False	1059.000000	1059	90.024000	37	854	1	chr6A.!!$F1	817
7	TraesCS4B01G190700	chr6A	140052734	140053554	820	False	1059.000000	1059	90.024000	37	854	1	chr6A.!!$F2	817
8	TraesCS4B01G190700	chr6A	607851129	607851880	751	False	449.000000	449	77.556000	105	852	1	chr6A.!!$F3	747
9	TraesCS4B01G190700	chr1D	203535001	203537046	2045	True	370.250000	767	81.924000	1015	2899	4	chr1D.!!$R1	1884
10	TraesCS4B01G190700	chr1A	258179517	258181473	1956	True	425.000000	752	83.312333	1043	2899	3	chr1A.!!$R1	1856
11	TraesCS4B01G190700	chr1B	297476956	297480459	3503	True	358.000000	582	83.097500	1215	2481	2	chr1B.!!$R1	1266
12	TraesCS4B01G190700	chr5A	648188783	648189534	751	True	460.000000	460	77.822000	105	852	1	chr5A.!!$R1	747
13	TraesCS4B01G190700	chr7D	380168734	380169486	752	False	440.000000	440	77.351000	103	852	1	chr7D.!!$F1	749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
250	254	0.261991	TCTCGTAGCCAGGGAAGGAT	59.738	55.000	0.00	0.00	0.00	3.24	F
805	824	0.393537	GTGGCTGGTGGATCTCCTTG	60.394	60.000	8.45	4.03	36.82	3.61	F
1439	1481	1.004679	CCATTGCAAGTTGTGGGGC	60.005	57.895	4.94	0.00	0.00	5.80	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1390	1421	0.251209	TATGACCGAGGAGATCCCCG	60.251	60.0	0.00	0.0	36.42	5.73	R
2455	4901	0.179156	GATCAACAGCCACCATTGCG	60.179	55.0	0.00	0.0	0.00	4.85	R
3407	8312	0.111253	AGAAGTTGGGCCAGGACTTG	59.889	55.0	24.53	0.0	34.02	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	3.860754	GCTCATAAACCCACAAAAGTGCC	60.861	47.826	0.00	0.00	0.00	5.01
113	114	3.438087	CAGACAGGAATTGCAGGTACAAG	59.562	47.826	0.00	0.00	31.96	3.16
179	183	3.016736	CGTATGCACAAGGGGAAATTCT	58.983	45.455	0.00	0.00	0.00	2.40
212	216	3.619038	GGCGAGTTTGACCAGAAGAATAG	59.381	47.826	0.00	0.00	0.00	1.73
221	225	2.578021	ACCAGAAGAATAGTGGCATGGT	59.422	45.455	0.00	0.00	34.40	3.55
236	240	1.270826	CATGGTGTGACACTCTCTCGT	59.729	52.381	16.07	0.00	34.40	4.18
250	254	0.261991	TCTCGTAGCCAGGGAAGGAT	59.738	55.000	0.00	0.00	0.00	3.24
339	343	1.617357	GGTTTACGAGGACCTCACACT	59.383	52.381	21.49	3.07	33.08	3.55
343	347	1.705873	ACGAGGACCTCACACTCTTT	58.294	50.000	21.49	0.00	0.00	2.52
403	408	1.002257	ACACATTGGCGAGCATGGA	60.002	52.632	0.00	0.00	0.00	3.41
449	456	2.359975	GGGACTTGGCTTCCGTGG	60.360	66.667	0.00	0.00	33.43	4.94
468	475	1.098050	GCTTCCGCATCTTCAACCAT	58.902	50.000	0.00	0.00	35.78	3.55
511	518	3.187955	GGGCTACTCACTAGACCGT	57.812	57.895	0.00	0.00	41.20	4.83
526	533	5.834204	ACTAGACCGTATTCCTTATGCTCTT	59.166	40.000	0.00	0.00	0.00	2.85
543	559	7.651027	ATGCTCTTAGGTATTGAAAGCAAAT	57.349	32.000	0.00	0.00	41.15	2.32
805	824	0.393537	GTGGCTGGTGGATCTCCTTG	60.394	60.000	8.45	4.03	36.82	3.61
963	982	5.240623	GGACACACACATATGTCTTTGGAAA	59.759	40.000	5.07	0.00	43.91	3.13
1026	1050	2.124067	CACAACACAACCCCCGGT	60.124	61.111	0.00	0.00	37.65	5.28
1029	1053	1.038681	ACAACACAACCCCCGGTTTC	61.039	55.000	0.00	0.00	44.33	2.78
1031	1055	1.940242	AACACAACCCCCGGTTTCCT	61.940	55.000	0.00	0.00	44.33	3.36
1212	1241	2.683933	TCTGCCGTCCCCTTCCTC	60.684	66.667	0.00	0.00	0.00	3.71
1247	1276	1.227973	CCCCTTTCTGCTATCCCGC	60.228	63.158	0.00	0.00	0.00	6.13
1335	1366	3.138798	CCGACCGGACCATCTCGT	61.139	66.667	9.46	0.00	37.50	4.18
1439	1481	1.004679	CCATTGCAAGTTGTGGGGC	60.005	57.895	4.94	0.00	0.00	5.80
1458	1500	4.262938	GGGGCCTGTATAATCTTCAGTACC	60.263	50.000	0.84	0.00	0.00	3.34
1470	1512	1.596752	CAGTACCGGCAGTTGCACA	60.597	57.895	0.00	0.00	44.36	4.57
1471	1513	1.597027	AGTACCGGCAGTTGCACAC	60.597	57.895	0.00	0.00	44.36	3.82
1472	1514	1.597027	GTACCGGCAGTTGCACACT	60.597	57.895	0.00	0.00	44.36	3.55
1473	1515	1.147376	TACCGGCAGTTGCACACTT	59.853	52.632	0.00	0.00	44.36	3.16
1474	1516	1.163420	TACCGGCAGTTGCACACTTG	61.163	55.000	0.00	0.00	44.36	3.16
1498	1540	4.155826	CAGTGGAGAATGGCGTTAATGAAA	59.844	41.667	0.00	0.00	0.00	2.69
1499	1541	4.764823	AGTGGAGAATGGCGTTAATGAAAA	59.235	37.500	0.00	0.00	0.00	2.29
1561	1639	9.698617	GCTCGGTTATTTTGTTAGTTATAGTTG	57.301	33.333	0.00	0.00	0.00	3.16
1584	1676	4.215965	GCACGTTACATGATTTTGTTCGT	58.784	39.130	0.00	0.00	38.48	3.85
1622	1714	5.469760	CCGTATATTGGTTGATGAATGCAGA	59.530	40.000	0.00	0.00	0.00	4.26
1672	4117	1.070134	TCCATCCATAGCTACCGCAAC	59.930	52.381	0.00	0.00	39.10	4.17
1679	4124	1.803334	TAGCTACCGCAACAACAAGG	58.197	50.000	0.00	0.00	39.10	3.61
1692	4137	5.861787	GCAACAACAAGGTACATTGGATAAC	59.138	40.000	22.90	5.62	34.36	1.89
1717	4162	8.446599	CCTAAATTTAGGGATACATTGTTCGT	57.553	34.615	29.62	0.00	45.29	3.85
1719	4164	9.716507	CTAAATTTAGGGATACATTGTTCGTTG	57.283	33.333	16.19	0.00	39.74	4.10
1812	4257	8.892723	TCATTAAGATGCACGAATGTTCTATTT	58.107	29.630	0.00	0.00	33.14	1.40
2088	4533	2.086869	CAATGTGAGTCTCCCGCATTT	58.913	47.619	10.03	0.00	41.23	2.32
2313	4758	5.254901	AGTCTCTATGTACGTATCCCCATC	58.745	45.833	0.00	0.00	0.00	3.51
2455	4901	2.251371	GTTGGTTCGGCTTCGCAC	59.749	61.111	0.00	0.00	0.00	5.34
2571	5017	7.441157	GTGTATAACCTGACATGCTGCTTAATA	59.559	37.037	0.00	0.00	0.00	0.98
3033	5957	9.967346	TGACTTGCTTTACTCTATGTATGTATC	57.033	33.333	0.00	0.00	0.00	2.24
3083	6090	5.310451	TCTTACGGTTCCTTAAATGTTGCT	58.690	37.500	0.00	0.00	0.00	3.91
3092	6099	6.418057	TCCTTAAATGTTGCTGTTTTGGAT	57.582	33.333	0.00	0.00	0.00	3.41
3182	6189	8.519799	ACAAAACCATATATTGTAGGGAGTTG	57.480	34.615	0.00	4.64	35.63	3.16
3186	6193	4.601857	CCATATATTGTAGGGAGTTGGGGT	59.398	45.833	0.00	0.00	0.00	4.95
3199	6206	2.034999	GGGGTTGATTCACCGGCA	59.965	61.111	0.00	0.00	37.76	5.69
3282	6300	2.799126	TATCAATTGGAGCGTTGGGT	57.201	45.000	5.42	0.00	0.00	4.51
3357	8262	0.754472	CCATACAATCGGGTACGGGT	59.246	55.000	0.00	0.00	41.39	5.28
3407	8312	1.000955	TCTTTGCCGAACAGGACTCTC	59.999	52.381	0.00	0.00	45.00	3.20
3448	8353	2.692041	ACTTCTTTTCTGCTGCTGCTTT	59.308	40.909	17.00	0.00	40.48	3.51
3460	8365	2.082231	TGCTGCTTTCTGAATCTCAGC	58.918	47.619	21.56	21.56	43.95	4.26
3541	8446	2.225467	GCTGCAACTCTTTCTCAACCT	58.775	47.619	0.00	0.00	0.00	3.50
3542	8447	2.031333	GCTGCAACTCTTTCTCAACCTG	60.031	50.000	0.00	0.00	0.00	4.00
3543	8448	1.949525	TGCAACTCTTTCTCAACCTGC	59.050	47.619	0.00	0.00	0.00	4.85
3544	8449	2.225467	GCAACTCTTTCTCAACCTGCT	58.775	47.619	0.00	0.00	0.00	4.24
3545	8450	2.031333	GCAACTCTTTCTCAACCTGCTG	60.031	50.000	0.00	0.00	0.00	4.41
3546	8451	3.209410	CAACTCTTTCTCAACCTGCTGT	58.791	45.455	0.00	0.00	0.00	4.40
3547	8452	2.843701	ACTCTTTCTCAACCTGCTGTG	58.156	47.619	0.00	0.00	0.00	3.66
3548	8453	1.534595	CTCTTTCTCAACCTGCTGTGC	59.465	52.381	0.00	0.00	0.00	4.57
3549	8454	0.595095	CTTTCTCAACCTGCTGTGCC	59.405	55.000	0.00	0.00	0.00	5.01
3550	8455	0.183492	TTTCTCAACCTGCTGTGCCT	59.817	50.000	0.00	0.00	0.00	4.75
3551	8456	0.535780	TTCTCAACCTGCTGTGCCTG	60.536	55.000	0.00	0.00	0.00	4.85
3552	8457	1.970114	CTCAACCTGCTGTGCCTGG	60.970	63.158	0.00	0.00	0.00	4.45
3553	8458	2.113774	CAACCTGCTGTGCCTGGA	59.886	61.111	0.00	0.00	0.00	3.86
3554	8459	2.113986	AACCTGCTGTGCCTGGAC	59.886	61.111	0.00	0.00	0.00	4.02
3585	8490	4.566759	GTGATTCATTGCGCAGTCTACTAA	59.433	41.667	11.31	0.00	0.00	2.24
3588	8493	6.983890	TGATTCATTGCGCAGTCTACTAATTA	59.016	34.615	11.31	0.00	0.00	1.40
3615	8520	2.948979	CACAACAGAACAAACCCTGCTA	59.051	45.455	0.00	0.00	33.90	3.49
3629	8534	3.265791	CCCTGCTACAATCTGTGAGTTC	58.734	50.000	0.00	0.00	0.00	3.01
3647	8552	6.955963	GTGAGTTCTGTTATTGTTATTCTGCG	59.044	38.462	0.00	0.00	0.00	5.18
3774	8679	9.720769	AATTAATAAGAGAACCGAACTGAAGAA	57.279	29.630	0.00	0.00	0.00	2.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	5.066505	GGCAACTATCACCAAACTGAATAGG	59.933	44.000	0.00	0.00	0.00	2.57
179	183	2.076100	CAAACTCGCCTGCAACATCTA	58.924	47.619	0.00	0.00	0.00	1.98
212	216	0.250467	AGAGTGTCACACCATGCCAC	60.250	55.000	3.66	0.00	34.49	5.01
221	225	1.166129	GGCTACGAGAGAGTGTCACA	58.834	55.000	5.62	0.00	0.00	3.58
236	240	3.731431	TCAAAGTATCCTTCCCTGGCTA	58.269	45.455	0.00	0.00	0.00	3.93
250	254	5.492895	TGCAGGACGGATTTTATCAAAGTA	58.507	37.500	0.00	0.00	0.00	2.24
339	343	4.584325	CCCATCAAAAGTTCCTCACAAAGA	59.416	41.667	0.00	0.00	0.00	2.52
343	347	3.593442	ACCCATCAAAAGTTCCTCACA	57.407	42.857	0.00	0.00	0.00	3.58
358	362	0.544833	TGCCCATGCTTTGAACCCAT	60.545	50.000	0.00	0.00	38.71	4.00
403	408	5.245075	TGCCCTTTGGTTCGATTATTTTCTT	59.755	36.000	0.00	0.00	0.00	2.52
468	475	1.221466	CTTGACGAGCGAACAAGGCA	61.221	55.000	18.33	0.00	37.80	4.75
491	498	0.106619	CGGTCTAGTGAGTAGCCCCT	60.107	60.000	0.00	0.00	0.00	4.79
493	500	2.338577	TACGGTCTAGTGAGTAGCCC	57.661	55.000	0.00	0.00	0.00	5.19
607	626	1.913951	TTGAGGCCATGCTGGATCGT	61.914	55.000	5.01	0.00	40.96	3.73
682	701	3.866582	GATCCAGGGGTCCAGCCG	61.867	72.222	0.00	0.00	38.44	5.52
686	705	2.286121	GTGGGATCCAGGGGTCCA	60.286	66.667	19.05	6.00	36.19	4.02
791	810	4.043310	AGAATTGTTCAAGGAGATCCACCA	59.957	41.667	0.92	0.00	38.89	4.17
805	824	2.030274	CCGGGTTGGTGAAGAATTGTTC	60.030	50.000	8.35	8.35	0.00	3.18
870	889	2.631160	TTCGGTTTGCTCTTTCCTCA	57.369	45.000	0.00	0.00	0.00	3.86
939	958	4.323417	TCCAAAGACATATGTGTGTGTCC	58.677	43.478	19.00	1.97	44.73	4.02
941	960	6.707440	TTTTCCAAAGACATATGTGTGTGT	57.293	33.333	19.00	1.22	39.09	3.72
963	982	3.053320	AGCTAGCTTTATCCTGGGCTTTT	60.053	43.478	12.68	0.00	36.40	2.27
1026	1050	1.603455	CTGCCTGCCGGAAAGGAAA	60.603	57.895	23.93	11.96	45.00	3.13
1029	1053	2.747855	GACTGCCTGCCGGAAAGG	60.748	66.667	17.23	17.23	44.97	3.11
1031	1055	4.344865	GGGACTGCCTGCCGGAAA	62.345	66.667	5.05	0.00	0.00	3.13
1231	1260	1.144057	ACGCGGGATAGCAGAAAGG	59.856	57.895	12.47	0.00	36.85	3.11
1335	1366	1.776662	CTTACACGATGGGGAGGAGA	58.223	55.000	0.00	0.00	0.00	3.71
1390	1421	0.251209	TATGACCGAGGAGATCCCCG	60.251	60.000	0.00	0.00	36.42	5.73
1439	1481	4.038763	TGCCGGTACTGAAGATTATACAGG	59.961	45.833	1.90	0.00	36.36	4.00
1471	1513	0.957395	ACGCCATTCTCCACTGCAAG	60.957	55.000	0.00	0.00	42.29	4.01
1472	1514	0.537143	AACGCCATTCTCCACTGCAA	60.537	50.000	0.00	0.00	0.00	4.08
1473	1515	0.323302	TAACGCCATTCTCCACTGCA	59.677	50.000	0.00	0.00	0.00	4.41
1474	1516	1.448985	TTAACGCCATTCTCCACTGC	58.551	50.000	0.00	0.00	0.00	4.40
1475	1517	3.270027	TCATTAACGCCATTCTCCACTG	58.730	45.455	0.00	0.00	0.00	3.66
1476	1518	3.627395	TCATTAACGCCATTCTCCACT	57.373	42.857	0.00	0.00	0.00	4.00
1477	1519	4.695217	TTTCATTAACGCCATTCTCCAC	57.305	40.909	0.00	0.00	0.00	4.02
1498	1540	0.611618	TGGACGGCAGCATGGAAATT	60.612	50.000	0.00	0.00	35.86	1.82
1499	1541	0.396139	ATGGACGGCAGCATGGAAAT	60.396	50.000	0.00	0.00	35.86	2.17
1561	1639	3.602062	CGAACAAAATCATGTAACGTGCC	59.398	43.478	0.00	0.00	32.02	5.01
1584	1676	2.851263	ATACGGTGCCAGTTTCAGAA	57.149	45.000	0.00	0.00	0.00	3.02
1672	4117	7.931578	TTAGGTTATCCAATGTACCTTGTTG	57.068	36.000	9.62	1.38	41.16	3.33
1717	4162	5.705441	GTGATTCAGTCATTAACCTCCACAA	59.295	40.000	0.00	0.00	39.48	3.33
1719	4164	5.245531	TGTGATTCAGTCATTAACCTCCAC	58.754	41.667	0.00	0.00	39.48	4.02
1756	4201	7.919091	TGATTTTGCATATCTTTGAATCTGAGC	59.081	33.333	9.83	0.00	0.00	4.26
2088	4533	9.793259	ACATAAATGAGGAAAGTTTAGACTCAA	57.207	29.630	16.38	5.85	41.03	3.02
2455	4901	0.179156	GATCAACAGCCACCATTGCG	60.179	55.000	0.00	0.00	0.00	4.85
2571	5017	6.984474	CCTACGGATCACAATACAACAGTAAT	59.016	38.462	0.00	0.00	0.00	1.89
2802	5522	8.617809	GGTCGCTTTGATTTACCATTTCTAATA	58.382	33.333	0.00	0.00	0.00	0.98
3003	5926	8.935844	CATACATAGAGTAAAGCAAGTCAACAA	58.064	33.333	0.00	0.00	36.05	2.83
3043	5967	7.163441	ACCGTAAGAAGTACAATGGTATGTTT	58.837	34.615	0.00	0.00	43.02	2.83
3046	5970	6.257193	GGAACCGTAAGAAGTACAATGGTATG	59.743	42.308	0.00	0.00	43.02	2.39
3144	6151	2.093764	TGGTTTTGTTGGGCTTTCTGTG	60.094	45.455	0.00	0.00	0.00	3.66
3182	6189	2.034999	TGCCGGTGAATCAACCCC	59.965	61.111	1.90	0.00	36.84	4.95
3186	6193	2.745884	CGCCTGCCGGTGAATCAA	60.746	61.111	1.90	0.00	43.70	2.57
3357	8262	4.026744	CAGAGTAGGAGACAAGGGATGAA	58.973	47.826	0.00	0.00	0.00	2.57
3407	8312	0.111253	AGAAGTTGGGCCAGGACTTG	59.889	55.000	24.53	0.00	34.02	3.16
3541	8446	0.831711	TCAGTAGTCCAGGCACAGCA	60.832	55.000	0.00	0.00	0.00	4.41
3542	8447	0.390472	GTCAGTAGTCCAGGCACAGC	60.390	60.000	0.00	0.00	0.00	4.40
3543	8448	0.109086	CGTCAGTAGTCCAGGCACAG	60.109	60.000	0.00	0.00	0.00	3.66
3544	8449	0.826256	ACGTCAGTAGTCCAGGCACA	60.826	55.000	0.00	0.00	0.00	4.57
3545	8450	0.388649	CACGTCAGTAGTCCAGGCAC	60.389	60.000	0.00	0.00	0.00	5.01
3546	8451	0.538746	TCACGTCAGTAGTCCAGGCA	60.539	55.000	0.00	0.00	0.00	4.75
3547	8452	0.818296	ATCACGTCAGTAGTCCAGGC	59.182	55.000	0.00	0.00	0.00	4.85
3548	8453	2.492088	TGAATCACGTCAGTAGTCCAGG	59.508	50.000	0.00	0.00	0.00	4.45
3549	8454	3.850122	TGAATCACGTCAGTAGTCCAG	57.150	47.619	0.00	0.00	0.00	3.86
3550	8455	4.494484	CAATGAATCACGTCAGTAGTCCA	58.506	43.478	0.00	0.00	0.00	4.02
3551	8456	3.307242	GCAATGAATCACGTCAGTAGTCC	59.693	47.826	0.00	0.00	0.00	3.85
3552	8457	3.000674	CGCAATGAATCACGTCAGTAGTC	60.001	47.826	0.00	0.00	0.00	2.59
3553	8458	2.923655	CGCAATGAATCACGTCAGTAGT	59.076	45.455	0.00	0.00	0.00	2.73
3554	8459	2.285256	GCGCAATGAATCACGTCAGTAG	60.285	50.000	0.30	0.00	0.00	2.57
3585	8490	5.221244	GGTTTGTTCTGTTGTGGCTTCTAAT	60.221	40.000	0.00	0.00	0.00	1.73
3588	8493	2.427095	GGTTTGTTCTGTTGTGGCTTCT	59.573	45.455	0.00	0.00	0.00	2.85
3615	8520	7.807977	AACAATAACAGAACTCACAGATTGT	57.192	32.000	0.00	0.00	37.76	2.71
3629	8534	5.248087	CGACACGCAGAATAACAATAACAG	58.752	41.667	0.00	0.00	0.00	3.16
3647	8552	4.373348	AGATAGTACTGGAAAGCGACAC	57.627	45.455	5.39	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.