Multiple sequence alignment - TraesCS4B01G190500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G190500 chr4B 100.000 2498 0 0 1 2498 413192280 413189783 0.000000e+00 4614
1 TraesCS4B01G190500 chr4A 89.243 1004 54 9 803 1782 137894486 137895459 0.000000e+00 1206
2 TraesCS4B01G190500 chr4A 93.436 777 45 4 1 774 137892963 137893736 0.000000e+00 1147
3 TraesCS4B01G190500 chr4A 88.806 134 8 1 1780 1906 137902758 137902891 9.250000e-35 158
4 TraesCS4B01G190500 chr4D 95.107 654 32 0 1 654 335177369 335176716 0.000000e+00 1031
5 TraesCS4B01G190500 chr4D 93.627 408 9 4 1144 1551 335174759 335174369 5.950000e-166 593
6 TraesCS4B01G190500 chr4D 90.521 211 10 4 1545 1746 335165561 335165352 1.140000e-68 270
7 TraesCS4B01G190500 chr4D 90.361 166 15 1 952 1116 335174913 335174748 1.500000e-52 217
8 TraesCS4B01G190500 chr4D 94.495 109 6 0 1804 1912 335165351 335165243 4.270000e-38 169
9 TraesCS4B01G190500 chr4D 93.243 74 5 0 642 715 335176701 335176628 2.630000e-20 110
10 TraesCS4B01G190500 chr3B 88.982 599 54 7 1910 2496 665232589 665231991 0.000000e+00 730
11 TraesCS4B01G190500 chr3B 88.167 600 54 14 1912 2498 697191747 697191152 0.000000e+00 699
12 TraesCS4B01G190500 chr3B 87.065 603 58 12 1910 2498 507295528 507294932 0.000000e+00 664
13 TraesCS4B01G190500 chr3B 84.538 595 76 13 1912 2498 644833100 644833686 2.150000e-160 575
14 TraesCS4B01G190500 chr2D 88.040 602 53 14 1912 2498 603207901 603207304 0.000000e+00 695
15 TraesCS4B01G190500 chr5B 87.789 606 51 10 1910 2498 29331614 29331015 0.000000e+00 688
16 TraesCS4B01G190500 chr5B 86.218 595 61 10 1909 2498 94391940 94392518 2.110000e-175 625
17 TraesCS4B01G190500 chr1B 87.500 592 58 13 1913 2497 544448275 544447693 0.000000e+00 669
18 TraesCS4B01G190500 chr7D 84.925 597 58 20 975 1549 560576094 560576680 2.150000e-160 575
19 TraesCS4B01G190500 chr7D 85.455 385 37 7 974 1340 560580294 560580677 1.400000e-102 383
20 TraesCS4B01G190500 chr6B 84.628 605 61 16 1910 2498 717102562 717101974 7.750000e-160 573
21 TraesCS4B01G190500 chr6B 86.475 488 42 9 1910 2385 711790272 711790747 4.760000e-142 514
22 TraesCS4B01G190500 chr5D 84.426 610 59 14 1910 2498 318818553 318819147 3.610000e-158 568
23 TraesCS4B01G190500 chr2B 85.637 557 58 17 1957 2498 80536606 80536057 1.300000e-157 566
24 TraesCS4B01G190500 chr2A 83.860 601 62 20 1912 2498 378596512 378595933 7.860000e-150 540
25 TraesCS4B01G190500 chr2A 82.266 609 70 22 1912 2498 149056823 149056231 2.230000e-135 492
26 TraesCS4B01G190500 chr7A 83.028 601 67 24 1910 2496 146936685 146936106 1.710000e-141 512
27 TraesCS4B01G190500 chr7A 83.798 574 55 18 975 1528 644681519 644682074 6.160000e-141 510
28 TraesCS4B01G190500 chr7A 86.723 354 29 6 1000 1335 644706292 644706645 6.520000e-101 377
29 TraesCS4B01G190500 chr7B 84.270 534 59 16 975 1490 608364285 608364811 4.800000e-137 497
30 TraesCS4B01G190500 chr7B 88.089 361 28 9 1001 1346 608375332 608375692 4.970000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G190500 chr4B 413189783 413192280 2497 True 4614.00 4614 100.0000 1 2498 1 chr4B.!!$R1 2497
1 TraesCS4B01G190500 chr4A 137892963 137895459 2496 False 1176.50 1206 91.3395 1 1782 2 chr4A.!!$F2 1781
2 TraesCS4B01G190500 chr4D 335174369 335177369 3000 True 487.75 1031 93.0845 1 1551 4 chr4D.!!$R2 1550
3 TraesCS4B01G190500 chr3B 665231991 665232589 598 True 730.00 730 88.9820 1910 2496 1 chr3B.!!$R2 586
4 TraesCS4B01G190500 chr3B 697191152 697191747 595 True 699.00 699 88.1670 1912 2498 1 chr3B.!!$R3 586
5 TraesCS4B01G190500 chr3B 507294932 507295528 596 True 664.00 664 87.0650 1910 2498 1 chr3B.!!$R1 588
6 TraesCS4B01G190500 chr3B 644833100 644833686 586 False 575.00 575 84.5380 1912 2498 1 chr3B.!!$F1 586
7 TraesCS4B01G190500 chr2D 603207304 603207901 597 True 695.00 695 88.0400 1912 2498 1 chr2D.!!$R1 586
8 TraesCS4B01G190500 chr5B 29331015 29331614 599 True 688.00 688 87.7890 1910 2498 1 chr5B.!!$R1 588
9 TraesCS4B01G190500 chr5B 94391940 94392518 578 False 625.00 625 86.2180 1909 2498 1 chr5B.!!$F1 589
10 TraesCS4B01G190500 chr1B 544447693 544448275 582 True 669.00 669 87.5000 1913 2497 1 chr1B.!!$R1 584
11 TraesCS4B01G190500 chr7D 560576094 560580677 4583 False 479.00 575 85.1900 974 1549 2 chr7D.!!$F1 575
12 TraesCS4B01G190500 chr6B 717101974 717102562 588 True 573.00 573 84.6280 1910 2498 1 chr6B.!!$R1 588
13 TraesCS4B01G190500 chr5D 318818553 318819147 594 False 568.00 568 84.4260 1910 2498 1 chr5D.!!$F1 588
14 TraesCS4B01G190500 chr2B 80536057 80536606 549 True 566.00 566 85.6370 1957 2498 1 chr2B.!!$R1 541
15 TraesCS4B01G190500 chr2A 378595933 378596512 579 True 540.00 540 83.8600 1912 2498 1 chr2A.!!$R2 586
16 TraesCS4B01G190500 chr2A 149056231 149056823 592 True 492.00 492 82.2660 1912 2498 1 chr2A.!!$R1 586
17 TraesCS4B01G190500 chr7A 146936106 146936685 579 True 512.00 512 83.0280 1910 2496 1 chr7A.!!$R1 586
18 TraesCS4B01G190500 chr7A 644681519 644682074 555 False 510.00 510 83.7980 975 1528 1 chr7A.!!$F1 553
19 TraesCS4B01G190500 chr7B 608364285 608364811 526 False 497.00 497 84.2700 975 1490 1 chr7B.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.026803 GTTTATCTGCCGCTTGCTCG 59.973 55.0 0.0 0.0 42.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 4688 0.178767 TGCAATGTAGATGGCTCGCT 59.821 50.0 0.3 0.0 28.6 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 4.499183 ACAGCCTTTTAGACGAAGATCAG 58.501 43.478 0.00 0.00 0.00 2.90
137 138 4.039151 AGACGAAGATCAGCACAGTATG 57.961 45.455 0.00 0.00 46.00 2.39
158 159 2.346803 GCAAGCGGAAGTTATGACAGA 58.653 47.619 0.00 0.00 0.00 3.41
182 183 6.919721 ACACTATGGCATTTTTACGTTTGAT 58.080 32.000 4.78 0.00 0.00 2.57
188 189 3.367630 GCATTTTTACGTTTGATGGCCAG 59.632 43.478 13.05 0.00 0.00 4.85
218 219 2.586425 CATGTCAACTTGGGTCAAGGT 58.414 47.619 11.65 2.65 42.67 3.50
222 223 1.142870 TCAACTTGGGTCAAGGTCCTG 59.857 52.381 11.65 4.52 39.61 3.86
236 237 1.301716 TCCTGTGGCGCTCAAGAAC 60.302 57.895 7.64 0.00 0.00 3.01
250 251 0.036010 AAGAACGCTCTGGATGTGGG 60.036 55.000 0.00 0.00 30.03 4.61
311 312 7.234355 ACAAAGACCTATCCAATGTTTCTTCT 58.766 34.615 0.00 0.00 0.00 2.85
317 318 9.886132 GACCTATCCAATGTTTCTTCTAGTTTA 57.114 33.333 0.00 0.00 0.00 2.01
332 333 0.026803 GTTTATCTGCCGCTTGCTCG 59.973 55.000 0.00 0.00 42.00 5.03
548 549 0.522180 CTTCTGCTGCTGCTTCCTTG 59.478 55.000 17.00 0.97 40.48 3.61
565 566 2.738139 GCACCCAACATTTGCCGC 60.738 61.111 0.00 0.00 0.00 6.53
583 584 1.588404 CGCGCTGTGGATACTAGTTTG 59.412 52.381 5.56 0.00 37.61 2.93
604 605 6.716934 TTGGGTTTGCATTTACAGTTTAGA 57.283 33.333 0.00 0.00 0.00 2.10
648 676 3.200522 GGCTCGATTTGGGCCTTG 58.799 61.111 7.63 0.00 42.31 3.61
685 713 5.118990 GTGTCTCATGTAGCATGTGGTAAT 58.881 41.667 8.68 0.00 0.00 1.89
689 717 6.018425 GTCTCATGTAGCATGTGGTAATTCAG 60.018 42.308 8.68 0.00 0.00 3.02
699 727 5.304686 TGTGGTAATTCAGAAGTCTTGGT 57.695 39.130 0.00 0.00 0.00 3.67
715 743 3.625764 TCTTGGTGCACTGTCAAAACTAC 59.374 43.478 17.98 0.00 0.00 2.73
719 749 4.131596 GGTGCACTGTCAAAACTACCTAA 58.868 43.478 17.98 0.00 0.00 2.69
726 764 7.224949 GCACTGTCAAAACTACCTAATATCTCC 59.775 40.741 0.00 0.00 0.00 3.71
730 768 8.533657 TGTCAAAACTACCTAATATCTCCGAAA 58.466 33.333 0.00 0.00 0.00 3.46
747 785 4.023963 TCCGAAATTGTGCAAATTCGTACA 60.024 37.500 24.23 11.72 46.46 2.90
748 786 4.320690 CCGAAATTGTGCAAATTCGTACAG 59.679 41.667 24.23 11.85 46.46 2.74
768 806 2.555757 AGTACGTTGTACAGGACTCCAC 59.444 50.000 9.53 0.00 0.00 4.02
774 1195 2.372264 TGTACAGGACTCCACGATACC 58.628 52.381 0.00 0.00 0.00 2.73
777 1198 2.100989 ACAGGACTCCACGATACCTTC 58.899 52.381 0.00 0.00 0.00 3.46
786 1207 2.945008 CCACGATACCTTCCACGTACTA 59.055 50.000 0.00 0.00 37.22 1.82
787 1208 3.567164 CCACGATACCTTCCACGTACTAT 59.433 47.826 0.00 0.00 37.22 2.12
788 1209 4.320057 CCACGATACCTTCCACGTACTATC 60.320 50.000 0.00 0.00 37.22 2.08
789 1210 4.274214 CACGATACCTTCCACGTACTATCA 59.726 45.833 0.00 0.00 37.22 2.15
790 1211 4.883585 ACGATACCTTCCACGTACTATCAA 59.116 41.667 0.00 0.00 37.22 2.57
791 1212 5.210715 CGATACCTTCCACGTACTATCAAC 58.789 45.833 0.00 0.00 0.00 3.18
792 1213 5.008415 CGATACCTTCCACGTACTATCAACT 59.992 44.000 0.00 0.00 0.00 3.16
793 1214 6.203530 CGATACCTTCCACGTACTATCAACTA 59.796 42.308 0.00 0.00 0.00 2.24
794 1215 5.573337 ACCTTCCACGTACTATCAACTAC 57.427 43.478 0.00 0.00 0.00 2.73
795 1216 4.095483 ACCTTCCACGTACTATCAACTACG 59.905 45.833 0.00 0.00 41.24 3.51
797 1218 3.872696 TCCACGTACTATCAACTACGGA 58.127 45.455 0.00 0.00 40.06 4.69
798 1219 4.454678 TCCACGTACTATCAACTACGGAT 58.545 43.478 0.00 0.00 40.06 4.18
799 1220 4.883585 TCCACGTACTATCAACTACGGATT 59.116 41.667 0.00 0.00 40.06 3.01
800 1221 5.357878 TCCACGTACTATCAACTACGGATTT 59.642 40.000 0.00 0.00 40.06 2.17
801 1222 6.038356 CCACGTACTATCAACTACGGATTTT 58.962 40.000 0.00 0.00 40.06 1.82
821 1591 0.883370 GGGATCACGCCCCGATTAAC 60.883 60.000 0.00 0.00 42.62 2.01
829 1599 2.081462 CGCCCCGATTAACTTTCTGTT 58.919 47.619 0.00 0.00 42.31 3.16
851 1621 8.234136 TGTTGATAGAGTAACATACGAAGGAT 57.766 34.615 0.00 0.00 32.30 3.24
882 1658 6.028987 GGGCAACGCGTTTAATTAAGATAAA 58.971 36.000 24.21 0.00 37.60 1.40
927 1720 1.155889 TCGCTTACCTGACGTTACGA 58.844 50.000 13.03 0.00 0.00 3.43
1011 3242 4.054671 GACCTAAGATCATGGCTTCTTCG 58.945 47.826 8.97 4.86 34.22 3.79
1024 3255 0.333312 TTCTTCGGGCTCTCTCCTCT 59.667 55.000 0.00 0.00 0.00 3.69
1029 3260 2.124693 GGGCTCTCTCCTCTCCACG 61.125 68.421 0.00 0.00 0.00 4.94
1358 3604 2.287965 GCGACGACGACAACAACGA 61.288 57.895 12.29 0.00 42.66 3.85
1494 3758 3.573491 GGTGCGCCGTTAGATGGC 61.573 66.667 4.18 1.02 46.71 4.40
1658 4554 5.695424 ATTAGTTTTCCCACCTACTCCTC 57.305 43.478 0.00 0.00 0.00 3.71
1667 4563 3.181468 CCCACCTACTCCTCGTTATTTCC 60.181 52.174 0.00 0.00 0.00 3.13
1670 4566 5.361857 CCACCTACTCCTCGTTATTTCCTTA 59.638 44.000 0.00 0.00 0.00 2.69
1671 4567 6.127253 CCACCTACTCCTCGTTATTTCCTTAA 60.127 42.308 0.00 0.00 0.00 1.85
1675 4571 9.392259 CCTACTCCTCGTTATTTCCTTAAAAAT 57.608 33.333 0.00 0.00 33.54 1.82
1747 4643 5.437289 TTGACCAATCACAAACTTGCTAG 57.563 39.130 0.00 0.00 33.38 3.42
1778 4674 0.750249 TGTGCTGTTGGACGAGAGAA 59.250 50.000 0.00 0.00 37.34 2.87
1782 4678 1.192534 GCTGTTGGACGAGAGAAAACG 59.807 52.381 0.00 0.00 0.00 3.60
1783 4679 2.739292 CTGTTGGACGAGAGAAAACGA 58.261 47.619 0.00 0.00 0.00 3.85
1784 4680 3.318017 CTGTTGGACGAGAGAAAACGAT 58.682 45.455 0.00 0.00 0.00 3.73
1785 4681 3.314553 TGTTGGACGAGAGAAAACGATC 58.685 45.455 0.00 0.00 0.00 3.69
1786 4682 3.005472 TGTTGGACGAGAGAAAACGATCT 59.995 43.478 0.00 0.00 0.00 2.75
1787 4683 3.489180 TGGACGAGAGAAAACGATCTC 57.511 47.619 8.81 8.81 45.06 2.75
1788 4684 2.817844 TGGACGAGAGAAAACGATCTCA 59.182 45.455 16.01 0.00 46.73 3.27
1789 4685 3.444034 TGGACGAGAGAAAACGATCTCAT 59.556 43.478 16.01 5.22 46.73 2.90
1790 4686 4.638865 TGGACGAGAGAAAACGATCTCATA 59.361 41.667 16.01 0.00 46.73 2.15
1791 4687 5.124936 TGGACGAGAGAAAACGATCTCATAA 59.875 40.000 16.01 0.00 46.73 1.90
1792 4688 6.034591 GGACGAGAGAAAACGATCTCATAAA 58.965 40.000 16.01 0.00 46.73 1.40
1793 4689 6.197468 GGACGAGAGAAAACGATCTCATAAAG 59.803 42.308 16.01 7.68 46.73 1.85
1794 4690 5.517054 ACGAGAGAAAACGATCTCATAAAGC 59.483 40.000 16.01 0.00 46.73 3.51
1795 4691 5.331161 CGAGAGAAAACGATCTCATAAAGCG 60.331 44.000 16.01 0.00 46.73 4.68
1796 4692 5.651530 AGAGAAAACGATCTCATAAAGCGA 58.348 37.500 16.01 0.00 46.73 4.93
1797 4693 5.746245 AGAGAAAACGATCTCATAAAGCGAG 59.254 40.000 16.01 0.00 46.73 5.03
1798 4694 4.268884 AGAAAACGATCTCATAAAGCGAGC 59.731 41.667 0.00 0.00 0.00 5.03
1799 4695 2.141535 ACGATCTCATAAAGCGAGCC 57.858 50.000 0.00 0.00 0.00 4.70
1800 4696 1.409064 ACGATCTCATAAAGCGAGCCA 59.591 47.619 0.00 0.00 0.00 4.75
1801 4697 2.036475 ACGATCTCATAAAGCGAGCCAT 59.964 45.455 0.00 0.00 0.00 4.40
1802 4698 2.665537 CGATCTCATAAAGCGAGCCATC 59.334 50.000 0.00 0.00 0.00 3.51
1803 4699 3.613671 CGATCTCATAAAGCGAGCCATCT 60.614 47.826 0.00 0.00 0.00 2.90
1804 4700 4.379918 CGATCTCATAAAGCGAGCCATCTA 60.380 45.833 0.00 0.00 0.00 1.98
1805 4701 4.244425 TCTCATAAAGCGAGCCATCTAC 57.756 45.455 0.00 0.00 0.00 2.59
1806 4702 3.636764 TCTCATAAAGCGAGCCATCTACA 59.363 43.478 0.00 0.00 0.00 2.74
1807 4703 4.281941 TCTCATAAAGCGAGCCATCTACAT 59.718 41.667 0.00 0.00 0.00 2.29
1808 4704 4.960938 TCATAAAGCGAGCCATCTACATT 58.039 39.130 0.00 0.00 0.00 2.71
1809 4705 4.751600 TCATAAAGCGAGCCATCTACATTG 59.248 41.667 0.00 0.00 0.00 2.82
1810 4706 1.303309 AAGCGAGCCATCTACATTGC 58.697 50.000 0.00 0.00 0.00 3.56
1811 4707 0.178767 AGCGAGCCATCTACATTGCA 59.821 50.000 0.00 0.00 0.00 4.08
1812 4708 1.016627 GCGAGCCATCTACATTGCAA 58.983 50.000 0.00 0.00 0.00 4.08
1813 4709 1.003116 GCGAGCCATCTACATTGCAAG 60.003 52.381 4.94 0.00 0.00 4.01
1814 4710 1.600957 CGAGCCATCTACATTGCAAGG 59.399 52.381 10.01 10.01 0.00 3.61
1815 4711 1.952296 GAGCCATCTACATTGCAAGGG 59.048 52.381 16.45 7.69 0.00 3.95
1816 4712 0.386838 GCCATCTACATTGCAAGGGC 59.613 55.000 16.45 4.76 41.68 5.19
1817 4713 0.664761 CCATCTACATTGCAAGGGCG 59.335 55.000 16.45 5.83 45.35 6.13
1818 4714 1.382522 CATCTACATTGCAAGGGCGT 58.617 50.000 16.45 7.37 45.35 5.68
1819 4715 1.331756 CATCTACATTGCAAGGGCGTC 59.668 52.381 16.45 0.00 45.35 5.19
1820 4716 0.613260 TCTACATTGCAAGGGCGTCT 59.387 50.000 16.45 0.00 45.35 4.18
1821 4717 0.729116 CTACATTGCAAGGGCGTCTG 59.271 55.000 16.45 4.19 45.35 3.51
1822 4718 0.323302 TACATTGCAAGGGCGTCTGA 59.677 50.000 16.45 0.00 45.35 3.27
1823 4719 0.322816 ACATTGCAAGGGCGTCTGAT 60.323 50.000 16.45 0.00 45.35 2.90
1824 4720 0.813184 CATTGCAAGGGCGTCTGATT 59.187 50.000 4.94 0.00 45.35 2.57
1825 4721 0.813184 ATTGCAAGGGCGTCTGATTG 59.187 50.000 4.94 0.00 45.35 2.67
1826 4722 1.243342 TTGCAAGGGCGTCTGATTGG 61.243 55.000 0.00 0.00 45.35 3.16
1827 4723 1.377202 GCAAGGGCGTCTGATTGGA 60.377 57.895 0.00 0.00 0.00 3.53
1828 4724 1.648467 GCAAGGGCGTCTGATTGGAC 61.648 60.000 0.00 0.00 0.00 4.02
1837 4733 3.232213 GTCTGATTGGACGCTTAGACA 57.768 47.619 0.00 0.00 35.75 3.41
1838 4734 3.585862 GTCTGATTGGACGCTTAGACAA 58.414 45.455 0.00 0.00 35.75 3.18
1839 4735 3.368236 GTCTGATTGGACGCTTAGACAAC 59.632 47.826 0.00 0.00 35.75 3.32
1840 4736 3.006430 TCTGATTGGACGCTTAGACAACA 59.994 43.478 0.00 0.00 0.00 3.33
1841 4737 3.734463 TGATTGGACGCTTAGACAACAA 58.266 40.909 0.00 0.00 0.00 2.83
1842 4738 4.130857 TGATTGGACGCTTAGACAACAAA 58.869 39.130 0.00 0.00 0.00 2.83
1843 4739 4.576873 TGATTGGACGCTTAGACAACAAAA 59.423 37.500 0.00 0.00 0.00 2.44
1844 4740 4.966965 TTGGACGCTTAGACAACAAAAA 57.033 36.364 0.00 0.00 0.00 1.94
1845 4741 5.508200 TTGGACGCTTAGACAACAAAAAT 57.492 34.783 0.00 0.00 0.00 1.82
1846 4742 6.621316 TTGGACGCTTAGACAACAAAAATA 57.379 33.333 0.00 0.00 0.00 1.40
1847 4743 6.621316 TGGACGCTTAGACAACAAAAATAA 57.379 33.333 0.00 0.00 0.00 1.40
1848 4744 7.209471 TGGACGCTTAGACAACAAAAATAAT 57.791 32.000 0.00 0.00 0.00 1.28
1849 4745 7.653647 TGGACGCTTAGACAACAAAAATAATT 58.346 30.769 0.00 0.00 0.00 1.40
1850 4746 8.784994 TGGACGCTTAGACAACAAAAATAATTA 58.215 29.630 0.00 0.00 0.00 1.40
1851 4747 9.615295 GGACGCTTAGACAACAAAAATAATTAA 57.385 29.630 0.00 0.00 0.00 1.40
1868 4764 9.950680 AAATAATTAACTAAGGATGTTGCATCG 57.049 29.630 0.00 0.00 0.00 3.84
1869 4765 6.377327 AATTAACTAAGGATGTTGCATCGG 57.623 37.500 0.00 0.00 0.00 4.18
1870 4766 3.350219 AACTAAGGATGTTGCATCGGT 57.650 42.857 0.00 0.00 0.00 4.69
1871 4767 2.632377 ACTAAGGATGTTGCATCGGTG 58.368 47.619 0.00 0.00 0.00 4.94
1872 4768 2.027192 ACTAAGGATGTTGCATCGGTGT 60.027 45.455 0.00 0.00 0.00 4.16
1873 4769 1.167851 AAGGATGTTGCATCGGTGTG 58.832 50.000 0.00 0.00 0.00 3.82
1874 4770 0.677731 AGGATGTTGCATCGGTGTGG 60.678 55.000 0.00 0.00 0.00 4.17
1875 4771 1.656818 GGATGTTGCATCGGTGTGGG 61.657 60.000 0.00 0.00 0.00 4.61
1876 4772 0.676466 GATGTTGCATCGGTGTGGGA 60.676 55.000 0.00 0.00 0.00 4.37
1877 4773 0.677731 ATGTTGCATCGGTGTGGGAG 60.678 55.000 0.00 0.00 0.00 4.30
1878 4774 1.302511 GTTGCATCGGTGTGGGAGT 60.303 57.895 0.00 0.00 0.00 3.85
1879 4775 0.889186 GTTGCATCGGTGTGGGAGTT 60.889 55.000 0.00 0.00 0.00 3.01
1880 4776 0.179004 TTGCATCGGTGTGGGAGTTT 60.179 50.000 0.00 0.00 0.00 2.66
1881 4777 0.888736 TGCATCGGTGTGGGAGTTTG 60.889 55.000 0.00 0.00 0.00 2.93
1882 4778 0.889186 GCATCGGTGTGGGAGTTTGT 60.889 55.000 0.00 0.00 0.00 2.83
1883 4779 1.604604 CATCGGTGTGGGAGTTTGTT 58.395 50.000 0.00 0.00 0.00 2.83
1884 4780 1.953686 CATCGGTGTGGGAGTTTGTTT 59.046 47.619 0.00 0.00 0.00 2.83
1885 4781 3.142951 CATCGGTGTGGGAGTTTGTTTA 58.857 45.455 0.00 0.00 0.00 2.01
1886 4782 2.563702 TCGGTGTGGGAGTTTGTTTAC 58.436 47.619 0.00 0.00 0.00 2.01
1887 4783 2.171027 TCGGTGTGGGAGTTTGTTTACT 59.829 45.455 0.00 0.00 0.00 2.24
1888 4784 2.546789 CGGTGTGGGAGTTTGTTTACTC 59.453 50.000 0.00 0.00 43.05 2.59
1889 4785 3.547746 GGTGTGGGAGTTTGTTTACTCA 58.452 45.455 6.17 0.00 45.07 3.41
1890 4786 3.314357 GGTGTGGGAGTTTGTTTACTCAC 59.686 47.826 6.17 2.86 46.54 3.51
1891 4787 3.314357 GTGTGGGAGTTTGTTTACTCACC 59.686 47.826 3.78 4.53 45.94 4.02
1892 4788 2.546789 GTGGGAGTTTGTTTACTCACCG 59.453 50.000 3.78 0.00 45.94 4.94
1893 4789 2.148768 GGGAGTTTGTTTACTCACCGG 58.851 52.381 0.00 0.00 45.07 5.28
1894 4790 2.224354 GGGAGTTTGTTTACTCACCGGA 60.224 50.000 9.46 0.00 45.07 5.14
1895 4791 3.064931 GGAGTTTGTTTACTCACCGGAG 58.935 50.000 9.46 0.00 45.07 4.63
1896 4792 3.243975 GGAGTTTGTTTACTCACCGGAGA 60.244 47.826 9.46 4.36 45.07 3.71
1897 4793 4.374399 GAGTTTGTTTACTCACCGGAGAA 58.626 43.478 9.46 0.00 44.26 2.87
1901 4797 2.960384 TGTTTACTCACCGGAGAAGTGA 59.040 45.455 9.46 0.00 44.26 3.41
1902 4798 3.243636 TGTTTACTCACCGGAGAAGTGAC 60.244 47.826 9.46 11.61 44.26 3.67
1904 4800 2.581216 ACTCACCGGAGAAGTGACTA 57.419 50.000 9.46 0.00 44.26 2.59
1906 4802 1.746220 CTCACCGGAGAAGTGACTAGG 59.254 57.143 9.46 0.00 44.26 3.02
1907 4803 0.818296 CACCGGAGAAGTGACTAGGG 59.182 60.000 9.46 0.00 37.42 3.53
1955 6078 2.012937 AACGGACGGCGATTTTATCA 57.987 45.000 16.62 0.00 0.00 2.15
2043 6335 4.823419 CAACGCGCCGACCCCATA 62.823 66.667 5.73 0.00 0.00 2.74
2045 6337 4.602259 ACGCGCCGACCCCATATG 62.602 66.667 5.73 0.00 0.00 1.78
2164 6833 8.583765 GCCGAATAAAATAAAAATGTCTCACAC 58.416 33.333 0.00 0.00 0.00 3.82
2257 7119 5.534207 ACTCAACCAAATCATTTTGCAGA 57.466 34.783 0.00 0.00 40.77 4.26
2315 7602 2.435372 TTGGGTGAACTGCTCAAACT 57.565 45.000 0.00 0.00 35.22 2.66
2459 7910 1.271543 CCTCCCACAGTTTCTGCATGA 60.272 52.381 0.00 0.00 34.37 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 1.305219 TTCCGCTTGCCATACTGTGC 61.305 55.000 0.00 0.00 0.00 4.57
137 138 1.398390 CTGTCATAACTTCCGCTTGCC 59.602 52.381 0.00 0.00 0.00 4.52
158 159 6.320494 TCAAACGTAAAAATGCCATAGTGT 57.680 33.333 0.00 0.00 0.00 3.55
188 189 2.200373 AGTTGACATGGTACTTGGCC 57.800 50.000 0.00 0.00 0.00 5.36
218 219 1.301716 GTTCTTGAGCGCCACAGGA 60.302 57.895 2.29 8.43 0.00 3.86
236 237 1.227380 GTAGCCCACATCCAGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
250 251 2.614057 CACCATTTCGATGGAAGGTAGC 59.386 50.000 12.02 0.00 44.39 3.58
382 383 0.478072 TGACACATTTCCAGGCCAGT 59.522 50.000 5.01 0.00 0.00 4.00
548 549 2.738139 GCGGCAAATGTTGGGTGC 60.738 61.111 0.00 0.00 37.55 5.01
565 566 2.093658 ACCCAAACTAGTATCCACAGCG 60.094 50.000 0.00 0.00 0.00 5.18
583 584 6.149633 CAGTCTAAACTGTAAATGCAAACCC 58.850 40.000 0.00 0.00 46.52 4.11
604 605 1.561076 TCATTGGGCAGCTACATCAGT 59.439 47.619 0.00 0.00 0.00 3.41
648 676 6.336566 ACATGAGACACATAGACACATCTTC 58.663 40.000 0.00 0.00 37.46 2.87
685 713 2.092968 ACAGTGCACCAAGACTTCTGAA 60.093 45.455 14.63 0.00 0.00 3.02
689 717 1.953559 TGACAGTGCACCAAGACTTC 58.046 50.000 14.63 0.27 0.00 3.01
699 727 7.620880 AGATATTAGGTAGTTTTGACAGTGCA 58.379 34.615 0.00 0.00 0.00 4.57
715 743 6.618287 TTGCACAATTTCGGAGATATTAGG 57.382 37.500 0.00 0.00 36.09 2.69
719 749 6.201517 CGAATTTGCACAATTTCGGAGATAT 58.798 36.000 22.92 0.00 44.06 1.63
747 785 2.555757 GTGGAGTCCTGTACAACGTACT 59.444 50.000 11.33 0.00 0.00 2.73
748 786 2.666619 CGTGGAGTCCTGTACAACGTAC 60.667 54.545 11.33 0.00 31.15 3.67
758 796 1.409427 GGAAGGTATCGTGGAGTCCTG 59.591 57.143 11.33 3.04 0.00 3.86
768 806 5.008415 AGTTGATAGTACGTGGAAGGTATCG 59.992 44.000 0.00 0.00 39.60 2.92
786 1207 4.881850 GTGATCCCAAAATCCGTAGTTGAT 59.118 41.667 0.00 0.00 0.00 2.57
787 1208 4.258543 GTGATCCCAAAATCCGTAGTTGA 58.741 43.478 0.00 0.00 0.00 3.18
788 1209 3.063452 CGTGATCCCAAAATCCGTAGTTG 59.937 47.826 0.00 0.00 0.00 3.16
789 1210 3.267483 CGTGATCCCAAAATCCGTAGTT 58.733 45.455 0.00 0.00 0.00 2.24
790 1211 2.901249 CGTGATCCCAAAATCCGTAGT 58.099 47.619 0.00 0.00 0.00 2.73
791 1212 1.597663 GCGTGATCCCAAAATCCGTAG 59.402 52.381 0.00 0.00 0.00 3.51
792 1213 1.658994 GCGTGATCCCAAAATCCGTA 58.341 50.000 0.00 0.00 0.00 4.02
793 1214 1.029947 GGCGTGATCCCAAAATCCGT 61.030 55.000 0.00 0.00 0.00 4.69
794 1215 1.724582 GGGCGTGATCCCAAAATCCG 61.725 60.000 0.00 0.00 45.82 4.18
795 1216 2.115510 GGGCGTGATCCCAAAATCC 58.884 57.895 0.00 0.00 45.82 3.01
821 1591 9.569167 TTCGTATGTTACTCTATCAACAGAAAG 57.431 33.333 0.00 0.00 38.01 2.62
829 1599 8.380867 TCCTATCCTTCGTATGTTACTCTATCA 58.619 37.037 0.00 0.00 0.00 2.15
841 1611 2.258109 GCCCCTTCCTATCCTTCGTAT 58.742 52.381 0.00 0.00 0.00 3.06
851 1621 2.400269 AAACGCGTTGCCCCTTCCTA 62.400 55.000 27.34 0.00 0.00 2.94
882 1658 3.365969 GGCGAAGTCCAAACGAATCAAAT 60.366 43.478 0.00 0.00 0.00 2.32
950 3181 0.736053 GAGTGAGGAGGCTGACGTAG 59.264 60.000 0.00 0.00 0.00 3.51
988 3219 4.384940 GAAGAAGCCATGATCTTAGGTCC 58.615 47.826 0.00 0.00 36.08 4.46
1011 3242 2.124693 CGTGGAGAGGAGAGAGCCC 61.125 68.421 0.00 0.00 0.00 5.19
1024 3255 4.007644 CAGCACCAGGAGCGTGGA 62.008 66.667 15.43 0.00 40.44 4.02
1340 3580 2.164673 CGTTGTTGTCGTCGTCGC 59.835 61.111 0.00 0.00 36.96 5.19
1349 3595 2.660552 CCTCGCCGTCGTTGTTGT 60.661 61.111 0.00 0.00 36.96 3.32
1350 3596 3.411351 CCCTCGCCGTCGTTGTTG 61.411 66.667 0.00 0.00 36.96 3.33
1358 3604 4.241555 GATGATGCCCCTCGCCGT 62.242 66.667 0.00 0.00 36.24 5.68
1466 3730 2.985847 GCGCACCAAGCCCTTTCT 60.986 61.111 0.30 0.00 41.38 2.52
1494 3758 4.920340 CACACACTGACTCAGCTTAGTTAG 59.080 45.833 16.08 16.08 38.65 2.34
1610 3884 5.248477 TGGTTTGAGGATGACTACTAGCTTT 59.752 40.000 0.00 0.00 0.00 3.51
1615 3889 9.656323 ACTAATATGGTTTGAGGATGACTACTA 57.344 33.333 0.00 0.00 0.00 1.82
1778 4674 2.866762 GGCTCGCTTTATGAGATCGTTT 59.133 45.455 0.00 0.00 35.43 3.60
1782 4678 3.924144 AGATGGCTCGCTTTATGAGATC 58.076 45.455 0.00 0.00 35.43 2.75
1783 4679 4.281941 TGTAGATGGCTCGCTTTATGAGAT 59.718 41.667 0.00 0.00 35.43 2.75
1784 4680 3.636764 TGTAGATGGCTCGCTTTATGAGA 59.363 43.478 0.00 0.00 35.43 3.27
1785 4681 3.982475 TGTAGATGGCTCGCTTTATGAG 58.018 45.455 0.00 0.00 36.53 2.90
1786 4682 4.607293 ATGTAGATGGCTCGCTTTATGA 57.393 40.909 0.00 0.00 0.00 2.15
1787 4683 4.612259 GCAATGTAGATGGCTCGCTTTATG 60.612 45.833 0.00 0.00 0.00 1.90
1788 4684 3.499918 GCAATGTAGATGGCTCGCTTTAT 59.500 43.478 0.00 0.00 0.00 1.40
1789 4685 2.872245 GCAATGTAGATGGCTCGCTTTA 59.128 45.455 0.00 0.00 0.00 1.85
1790 4686 1.672881 GCAATGTAGATGGCTCGCTTT 59.327 47.619 0.00 0.00 0.00 3.51
1791 4687 1.303309 GCAATGTAGATGGCTCGCTT 58.697 50.000 0.00 0.00 0.00 4.68
1792 4688 0.178767 TGCAATGTAGATGGCTCGCT 59.821 50.000 0.30 0.00 28.60 4.93
1793 4689 1.003116 CTTGCAATGTAGATGGCTCGC 60.003 52.381 0.00 0.00 28.60 5.03
1794 4690 1.600957 CCTTGCAATGTAGATGGCTCG 59.399 52.381 0.00 0.00 28.60 5.03
1795 4691 1.952296 CCCTTGCAATGTAGATGGCTC 59.048 52.381 0.00 0.00 28.60 4.70
1796 4692 2.025863 GCCCTTGCAATGTAGATGGCT 61.026 52.381 0.00 0.00 37.47 4.75
1797 4693 0.386838 GCCCTTGCAATGTAGATGGC 59.613 55.000 0.00 0.26 37.47 4.40
1798 4694 0.664761 CGCCCTTGCAATGTAGATGG 59.335 55.000 0.00 0.00 37.32 3.51
1799 4695 1.331756 GACGCCCTTGCAATGTAGATG 59.668 52.381 0.00 0.00 37.32 2.90
1800 4696 1.210478 AGACGCCCTTGCAATGTAGAT 59.790 47.619 0.00 0.00 37.32 1.98
1801 4697 0.613260 AGACGCCCTTGCAATGTAGA 59.387 50.000 0.00 0.00 37.32 2.59
1802 4698 0.729116 CAGACGCCCTTGCAATGTAG 59.271 55.000 0.00 0.00 37.32 2.74
1803 4699 0.323302 TCAGACGCCCTTGCAATGTA 59.677 50.000 0.00 0.00 37.32 2.29
1804 4700 0.322816 ATCAGACGCCCTTGCAATGT 60.323 50.000 0.00 0.00 37.32 2.71
1805 4701 0.813184 AATCAGACGCCCTTGCAATG 59.187 50.000 0.00 0.00 37.32 2.82
1806 4702 0.813184 CAATCAGACGCCCTTGCAAT 59.187 50.000 0.00 0.00 37.32 3.56
1807 4703 1.243342 CCAATCAGACGCCCTTGCAA 61.243 55.000 0.00 0.00 37.32 4.08
1808 4704 1.675310 CCAATCAGACGCCCTTGCA 60.675 57.895 0.00 0.00 37.32 4.08
1809 4705 1.377202 TCCAATCAGACGCCCTTGC 60.377 57.895 0.00 0.00 0.00 4.01
1810 4706 2.471255 GTCCAATCAGACGCCCTTG 58.529 57.895 0.00 0.00 0.00 3.61
1817 4713 3.232213 TGTCTAAGCGTCCAATCAGAC 57.768 47.619 0.00 0.00 34.39 3.51
1818 4714 3.006430 TGTTGTCTAAGCGTCCAATCAGA 59.994 43.478 0.00 0.00 0.00 3.27
1819 4715 3.325870 TGTTGTCTAAGCGTCCAATCAG 58.674 45.455 0.00 0.00 0.00 2.90
1820 4716 3.394674 TGTTGTCTAAGCGTCCAATCA 57.605 42.857 0.00 0.00 0.00 2.57
1821 4717 4.742438 TTTGTTGTCTAAGCGTCCAATC 57.258 40.909 0.00 0.00 0.00 2.67
1822 4718 5.508200 TTTTTGTTGTCTAAGCGTCCAAT 57.492 34.783 0.00 0.00 0.00 3.16
1823 4719 4.966965 TTTTTGTTGTCTAAGCGTCCAA 57.033 36.364 0.00 0.00 0.00 3.53
1824 4720 6.621316 TTATTTTTGTTGTCTAAGCGTCCA 57.379 33.333 0.00 0.00 0.00 4.02
1825 4721 9.615295 TTAATTATTTTTGTTGTCTAAGCGTCC 57.385 29.630 0.00 0.00 0.00 4.79
1842 4738 9.950680 CGATGCAACATCCTTAGTTAATTATTT 57.049 29.630 0.00 0.00 0.00 1.40
1843 4739 8.567948 CCGATGCAACATCCTTAGTTAATTATT 58.432 33.333 0.00 0.00 0.00 1.40
1844 4740 7.719633 ACCGATGCAACATCCTTAGTTAATTAT 59.280 33.333 0.00 0.00 0.00 1.28
1845 4741 7.011950 CACCGATGCAACATCCTTAGTTAATTA 59.988 37.037 0.00 0.00 0.00 1.40
1846 4742 5.885912 ACCGATGCAACATCCTTAGTTAATT 59.114 36.000 0.00 0.00 0.00 1.40
1847 4743 5.296780 CACCGATGCAACATCCTTAGTTAAT 59.703 40.000 0.00 0.00 0.00 1.40
1848 4744 4.634004 CACCGATGCAACATCCTTAGTTAA 59.366 41.667 0.00 0.00 0.00 2.01
1849 4745 4.188462 CACCGATGCAACATCCTTAGTTA 58.812 43.478 0.00 0.00 0.00 2.24
1850 4746 3.009723 CACCGATGCAACATCCTTAGTT 58.990 45.455 0.00 0.00 0.00 2.24
1851 4747 2.027192 ACACCGATGCAACATCCTTAGT 60.027 45.455 0.00 0.00 0.00 2.24
1852 4748 2.352651 CACACCGATGCAACATCCTTAG 59.647 50.000 0.00 0.00 0.00 2.18
1853 4749 2.355197 CACACCGATGCAACATCCTTA 58.645 47.619 0.00 0.00 0.00 2.69
1854 4750 1.167851 CACACCGATGCAACATCCTT 58.832 50.000 0.00 0.00 0.00 3.36
1855 4751 0.677731 CCACACCGATGCAACATCCT 60.678 55.000 0.00 0.00 0.00 3.24
1856 4752 1.656818 CCCACACCGATGCAACATCC 61.657 60.000 0.00 0.00 0.00 3.51
1857 4753 0.676466 TCCCACACCGATGCAACATC 60.676 55.000 0.00 0.00 0.00 3.06
1858 4754 0.677731 CTCCCACACCGATGCAACAT 60.678 55.000 0.00 0.00 0.00 2.71
1859 4755 1.302431 CTCCCACACCGATGCAACA 60.302 57.895 0.00 0.00 0.00 3.33
1860 4756 0.889186 AACTCCCACACCGATGCAAC 60.889 55.000 0.00 0.00 0.00 4.17
1861 4757 0.179004 AAACTCCCACACCGATGCAA 60.179 50.000 0.00 0.00 0.00 4.08
1862 4758 0.888736 CAAACTCCCACACCGATGCA 60.889 55.000 0.00 0.00 0.00 3.96
1863 4759 0.889186 ACAAACTCCCACACCGATGC 60.889 55.000 0.00 0.00 0.00 3.91
1864 4760 1.604604 AACAAACTCCCACACCGATG 58.395 50.000 0.00 0.00 0.00 3.84
1865 4761 2.358322 AAACAAACTCCCACACCGAT 57.642 45.000 0.00 0.00 0.00 4.18
1866 4762 2.171027 AGTAAACAAACTCCCACACCGA 59.829 45.455 0.00 0.00 0.00 4.69
1867 4763 2.546789 GAGTAAACAAACTCCCACACCG 59.453 50.000 0.00 0.00 40.06 4.94
1868 4764 3.314357 GTGAGTAAACAAACTCCCACACC 59.686 47.826 1.82 0.00 44.40 4.16
1869 4765 3.314357 GGTGAGTAAACAAACTCCCACAC 59.686 47.826 1.82 0.00 44.40 3.82
1870 4766 3.547746 GGTGAGTAAACAAACTCCCACA 58.452 45.455 1.82 0.00 44.40 4.17
1871 4767 2.546789 CGGTGAGTAAACAAACTCCCAC 59.453 50.000 1.82 0.00 44.40 4.61
1872 4768 2.485835 CCGGTGAGTAAACAAACTCCCA 60.486 50.000 0.00 0.00 44.40 4.37
1873 4769 2.148768 CCGGTGAGTAAACAAACTCCC 58.851 52.381 0.00 2.51 44.40 4.30
1874 4770 3.064931 CTCCGGTGAGTAAACAAACTCC 58.935 50.000 0.00 0.00 44.40 3.85
1875 4771 3.986277 TCTCCGGTGAGTAAACAAACTC 58.014 45.455 0.00 0.00 45.10 3.01
1876 4772 4.141779 ACTTCTCCGGTGAGTAAACAAACT 60.142 41.667 6.29 0.00 39.75 2.66
1877 4773 4.025145 CACTTCTCCGGTGAGTAAACAAAC 60.025 45.833 6.29 0.00 39.75 2.93
1878 4774 4.124238 CACTTCTCCGGTGAGTAAACAAA 58.876 43.478 6.29 0.00 39.75 2.83
1879 4775 3.385433 TCACTTCTCCGGTGAGTAAACAA 59.615 43.478 6.29 0.00 38.57 2.83
1880 4776 2.960384 TCACTTCTCCGGTGAGTAAACA 59.040 45.455 6.29 0.00 38.57 2.83
1881 4777 3.005578 AGTCACTTCTCCGGTGAGTAAAC 59.994 47.826 6.29 8.23 43.09 2.01
1882 4778 3.228453 AGTCACTTCTCCGGTGAGTAAA 58.772 45.455 6.29 0.00 43.09 2.01
1883 4779 2.872732 AGTCACTTCTCCGGTGAGTAA 58.127 47.619 6.29 0.00 43.09 2.24
1884 4780 2.581216 AGTCACTTCTCCGGTGAGTA 57.419 50.000 6.29 0.00 43.09 2.59
1885 4781 2.438411 CTAGTCACTTCTCCGGTGAGT 58.562 52.381 6.29 5.51 45.62 3.41
1886 4782 1.746220 CCTAGTCACTTCTCCGGTGAG 59.254 57.143 6.29 3.32 43.17 3.51
1887 4783 1.616187 CCCTAGTCACTTCTCCGGTGA 60.616 57.143 0.00 0.06 40.78 4.02
1888 4784 0.818296 CCCTAGTCACTTCTCCGGTG 59.182 60.000 0.00 0.00 36.17 4.94
1889 4785 0.971447 GCCCTAGTCACTTCTCCGGT 60.971 60.000 0.00 0.00 0.00 5.28
1890 4786 0.684805 AGCCCTAGTCACTTCTCCGG 60.685 60.000 0.00 0.00 0.00 5.14
1891 4787 2.054232 TAGCCCTAGTCACTTCTCCG 57.946 55.000 0.00 0.00 0.00 4.63
1892 4788 3.633418 TCTTAGCCCTAGTCACTTCTCC 58.367 50.000 0.00 0.00 0.00 3.71
1893 4789 3.067601 GCTCTTAGCCCTAGTCACTTCTC 59.932 52.174 0.00 0.00 34.48 2.87
1894 4790 3.028130 GCTCTTAGCCCTAGTCACTTCT 58.972 50.000 0.00 0.00 34.48 2.85
1895 4791 2.761208 TGCTCTTAGCCCTAGTCACTTC 59.239 50.000 0.00 0.00 41.51 3.01
1896 4792 2.821437 TGCTCTTAGCCCTAGTCACTT 58.179 47.619 0.00 0.00 41.51 3.16
1897 4793 2.498078 GTTGCTCTTAGCCCTAGTCACT 59.502 50.000 0.00 0.00 41.51 3.41
1901 4797 3.173965 TGAAGTTGCTCTTAGCCCTAGT 58.826 45.455 0.00 0.00 41.51 2.57
1902 4798 3.895232 TGAAGTTGCTCTTAGCCCTAG 57.105 47.619 0.00 0.00 41.51 3.02
1904 4800 3.009473 TCATTGAAGTTGCTCTTAGCCCT 59.991 43.478 0.00 0.00 41.51 5.19
1906 4802 3.376546 CCTCATTGAAGTTGCTCTTAGCC 59.623 47.826 0.00 0.00 41.51 3.93
1907 4803 4.006319 ACCTCATTGAAGTTGCTCTTAGC 58.994 43.478 0.00 0.00 42.82 3.09
2123 6742 6.995511 TTATTCGGCTTGTAAACTATGCTT 57.004 33.333 0.00 0.00 0.00 3.91
2164 6833 5.396362 CGTTTGCAAAACTATGTGAGAACTG 59.604 40.000 14.67 0.00 0.00 3.16
2257 7119 3.093814 TGATTGGAAAGCTCATGTGCAT 58.906 40.909 20.92 7.11 30.31 3.96
2268 7130 3.189080 TCAAGACATGCGTGATTGGAAAG 59.811 43.478 14.17 0.00 29.81 2.62
2315 7602 2.751436 GCATGGAGGAGCGGCAAA 60.751 61.111 1.45 0.00 0.00 3.68
2386 7836 3.198582 GTAGAAGACGAGCGCCCT 58.801 61.111 2.29 0.00 0.00 5.19
2459 7910 3.769844 CGGTATCCTGCTAATACCTGGAT 59.230 47.826 0.00 0.00 44.33 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.