Multiple sequence alignment - TraesCS4B01G190000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G190000 chr4B 100.000 3611 0 0 1 3611 412780212 412776602 0.000000e+00 6669.0
1 TraesCS4B01G190000 chr4A 90.850 1847 126 23 618 2425 138417475 138419317 0.000000e+00 2435.0
2 TraesCS4B01G190000 chr4A 96.465 396 9 4 2452 2843 138419386 138419780 0.000000e+00 649.0
3 TraesCS4B01G190000 chr4A 80.164 610 51 30 2976 3566 138419764 138420322 3.380000e-105 392.0
4 TraesCS4B01G190000 chr4D 92.651 1143 50 13 1725 2843 334963114 334961982 0.000000e+00 1615.0
5 TraesCS4B01G190000 chr4D 91.137 1117 63 13 636 1720 334964314 334963202 0.000000e+00 1482.0
6 TraesCS4B01G190000 chr4D 89.189 185 12 3 382 561 15922854 15922673 1.300000e-54 224.0
7 TraesCS4B01G190000 chr4D 90.511 137 13 0 3475 3611 334961373 334961237 7.960000e-42 182.0
8 TraesCS4B01G190000 chr4D 77.056 231 32 10 3153 3379 334961824 334961611 2.950000e-21 113.0
9 TraesCS4B01G190000 chr5D 84.629 579 49 10 3 559 351002189 351002749 1.140000e-149 540.0
10 TraesCS4B01G190000 chr5D 94.382 89 4 1 471 559 419772454 419772367 6.290000e-28 135.0
11 TraesCS4B01G190000 chr5A 87.000 400 42 6 1 397 531515426 531515818 3.310000e-120 442.0
12 TraesCS4B01G190000 chr5A 77.740 292 52 9 997 1275 238691762 238692053 2.230000e-37 167.0
13 TraesCS4B01G190000 chr5A 86.538 104 14 0 976 1079 610215788 610215891 8.190000e-22 115.0
14 TraesCS4B01G190000 chr5A 100.000 28 0 0 2961 2988 90609684 90609711 7.000000e-03 52.8
15 TraesCS4B01G190000 chr1B 86.992 246 25 4 1906 2149 250524089 250523849 1.650000e-68 270.0
16 TraesCS4B01G190000 chr1B 87.766 188 23 0 2103 2290 201776449 201776636 1.690000e-53 220.0
17 TraesCS4B01G190000 chr1D 87.234 188 24 0 2103 2290 134683420 134683607 7.850000e-52 215.0
18 TraesCS4B01G190000 chr1A 86.772 189 25 0 2102 2290 163382763 163382575 1.020000e-50 211.0
19 TraesCS4B01G190000 chr6B 87.681 138 12 3 1134 1270 133630816 133630683 4.830000e-34 156.0
20 TraesCS4B01G190000 chr6A 88.095 126 12 3 1138 1261 576906871 576906995 2.910000e-31 147.0
21 TraesCS4B01G190000 chr6A 87.302 126 14 2 1138 1261 60420470 60420595 3.760000e-30 143.0
22 TraesCS4B01G190000 chr7D 87.302 126 14 2 1138 1261 351622792 351622667 3.760000e-30 143.0
23 TraesCS4B01G190000 chr7D 79.167 144 18 9 820 961 536652997 536652864 4.970000e-14 89.8
24 TraesCS4B01G190000 chr7A 87.302 126 14 2 1138 1261 419019925 419019800 3.760000e-30 143.0
25 TraesCS4B01G190000 chr3D 87.302 126 14 2 1138 1261 5418080 5417955 3.760000e-30 143.0
26 TraesCS4B01G190000 chr2A 85.612 139 15 4 1134 1271 663558308 663558174 1.350000e-29 141.0
27 TraesCS4B01G190000 chr6D 81.944 144 14 8 820 961 425083480 425083347 1.060000e-20 111.0
28 TraesCS4B01G190000 chrUn 89.610 77 3 2 820 896 34452894 34452965 3.840000e-15 93.5
29 TraesCS4B01G190000 chr7B 100.000 29 0 0 2659 2687 547967795 547967767 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G190000 chr4B 412776602 412780212 3610 True 6669.000000 6669 100.000000 1 3611 1 chr4B.!!$R1 3610
1 TraesCS4B01G190000 chr4A 138417475 138420322 2847 False 1158.666667 2435 89.159667 618 3566 3 chr4A.!!$F1 2948
2 TraesCS4B01G190000 chr4D 334961237 334964314 3077 True 848.000000 1615 87.838750 636 3611 4 chr4D.!!$R2 2975
3 TraesCS4B01G190000 chr5D 351002189 351002749 560 False 540.000000 540 84.629000 3 559 1 chr5D.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 747 0.038159 ATAAGGCCGCGCTCATAGAC 60.038 55.0 5.56 0.0 0.00 2.59 F
1330 1388 0.030235 GTCGGCCCGATTTATTTGGC 59.970 55.0 10.04 0.0 43.26 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1759 0.61326 TTATGCTCTGAGGTGCCGTT 59.387 50.0 6.83 0.0 0.0 4.44 R
3298 3543 0.03601 CAGCCCCTCCAACTACACAG 60.036 60.0 0.00 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.416329 GGAAAGCTTTTATGTTGGTCATATGAT 58.584 33.333 14.05 0.00 38.59 2.45
28 29 9.241317 GAAAGCTTTTATGTTGGTCATATGATG 57.759 33.333 14.05 0.00 38.59 3.07
29 30 7.886629 AGCTTTTATGTTGGTCATATGATGT 57.113 32.000 9.02 0.00 38.59 3.06
62 63 3.070734 CCAATCTCCATGGACTAGACCTG 59.929 52.174 11.44 8.15 40.56 4.00
84 93 7.969536 CTGAAGAAGGATGACTGAAACTAAA 57.030 36.000 0.00 0.00 0.00 1.85
100 109 7.230747 TGAAACTAAAACAGATGGATCCTTCA 58.769 34.615 25.15 13.49 0.00 3.02
101 110 7.890127 TGAAACTAAAACAGATGGATCCTTCAT 59.110 33.333 25.15 12.91 0.00 2.57
105 114 1.202734 ACAGATGGATCCTTCATGGCG 60.203 52.381 25.15 12.59 35.26 5.69
108 117 1.998444 ATGGATCCTTCATGGCGGCA 61.998 55.000 16.34 16.34 35.26 5.69
136 145 1.446366 GGAGGAAGCGGTATGGTCC 59.554 63.158 0.00 0.00 0.00 4.46
168 180 9.624373 GATCATATGGGAGCAATTATATTCAGT 57.376 33.333 2.13 0.00 0.00 3.41
195 207 1.267806 CGCTGTCTTTTCCATTGCACT 59.732 47.619 0.00 0.00 0.00 4.40
236 248 3.338275 TTGCCATACGTGAGGGGGC 62.338 63.158 0.00 4.52 43.20 5.80
258 275 2.368439 TCACTTGCTTTGCAACTGAGT 58.632 42.857 0.00 0.00 43.99 3.41
260 277 3.944650 TCACTTGCTTTGCAACTGAGTAA 59.055 39.130 0.00 0.00 43.99 2.24
266 283 3.489059 GCTTTGCAACTGAGTAACTTGCA 60.489 43.478 5.64 5.64 46.55 4.08
288 305 7.884257 TGCAAATAATGATTGAAACAGACTGA 58.116 30.769 10.08 0.00 0.00 3.41
302 319 4.924625 ACAGACTGACTAGAGGCTCTAAA 58.075 43.478 23.62 12.16 0.00 1.85
303 320 5.515106 ACAGACTGACTAGAGGCTCTAAAT 58.485 41.667 23.62 15.35 0.00 1.40
308 325 5.955355 ACTGACTAGAGGCTCTAAATCTTGT 59.045 40.000 23.62 16.73 32.86 3.16
312 329 7.039011 TGACTAGAGGCTCTAAATCTTGTGAAA 60.039 37.037 23.62 5.74 30.84 2.69
341 359 6.702329 AGGAAACGACAGATCTTCAAATAGT 58.298 36.000 0.00 0.00 0.00 2.12
347 365 9.706691 AACGACAGATCTTCAAATAGTTTTCTA 57.293 29.630 0.00 0.00 36.78 2.10
348 366 9.360093 ACGACAGATCTTCAAATAGTTTTCTAG 57.640 33.333 0.00 0.00 35.72 2.43
349 367 9.360093 CGACAGATCTTCAAATAGTTTTCTAGT 57.640 33.333 0.00 0.00 35.72 2.57
390 408 5.739959 TCATGGATCAACGGAAATCTTGTA 58.260 37.500 0.00 0.00 0.00 2.41
393 411 7.990314 TCATGGATCAACGGAAATCTTGTATTA 59.010 33.333 0.00 0.00 0.00 0.98
406 424 9.297586 GAAATCTTGTATTACTCACATACGTCA 57.702 33.333 0.00 0.00 30.73 4.35
449 467 2.356665 TGCTGGCAGTTTTTGGTAGA 57.643 45.000 17.16 0.00 0.00 2.59
456 474 3.314357 GGCAGTTTTTGGTAGAACTTCGT 59.686 43.478 0.00 0.00 34.04 3.85
469 487 1.156736 ACTTCGTGTTGCACTATGGC 58.843 50.000 0.00 0.00 31.34 4.40
470 488 1.270839 ACTTCGTGTTGCACTATGGCT 60.271 47.619 0.00 0.00 31.34 4.75
471 489 2.028476 ACTTCGTGTTGCACTATGGCTA 60.028 45.455 0.00 0.00 31.34 3.93
476 494 1.134401 TGTTGCACTATGGCTAGGCTC 60.134 52.381 18.18 0.79 34.04 4.70
477 495 1.139853 GTTGCACTATGGCTAGGCTCT 59.860 52.381 18.18 7.47 34.04 4.09
478 496 2.365617 GTTGCACTATGGCTAGGCTCTA 59.634 50.000 18.18 8.23 34.04 2.43
506 529 7.331026 CCTGATGAGGTTGTTAATCTCTGTAA 58.669 38.462 3.76 0.00 34.16 2.41
589 612 2.588027 TTTTTGGAGCGGTGGTTTTC 57.412 45.000 0.00 0.00 0.00 2.29
590 613 1.770294 TTTTGGAGCGGTGGTTTTCT 58.230 45.000 0.00 0.00 0.00 2.52
591 614 1.770294 TTTGGAGCGGTGGTTTTCTT 58.230 45.000 0.00 0.00 0.00 2.52
592 615 1.770294 TTGGAGCGGTGGTTTTCTTT 58.230 45.000 0.00 0.00 0.00 2.52
593 616 1.770294 TGGAGCGGTGGTTTTCTTTT 58.230 45.000 0.00 0.00 0.00 2.27
594 617 2.104170 TGGAGCGGTGGTTTTCTTTTT 58.896 42.857 0.00 0.00 0.00 1.94
614 637 2.341846 TTTTGAGAAACTGGAGCGGT 57.658 45.000 0.00 0.00 0.00 5.68
615 638 1.593196 TTTGAGAAACTGGAGCGGTG 58.407 50.000 0.00 0.00 0.00 4.94
616 639 0.250295 TTGAGAAACTGGAGCGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
644 667 5.567138 AGCCACATAACACATTCTTTAGC 57.433 39.130 0.00 0.00 0.00 3.09
645 668 4.094887 AGCCACATAACACATTCTTTAGCG 59.905 41.667 0.00 0.00 0.00 4.26
677 706 2.259012 TCATTGAAAAGCCAGCCCAAT 58.741 42.857 0.00 0.00 0.00 3.16
680 709 4.470664 TCATTGAAAAGCCAGCCCAATAAT 59.529 37.500 0.00 0.00 0.00 1.28
715 744 1.080772 CGATAAGGCCGCGCTCATA 60.081 57.895 5.56 0.00 0.00 2.15
716 745 1.073216 CGATAAGGCCGCGCTCATAG 61.073 60.000 5.56 0.00 0.00 2.23
718 747 0.038159 ATAAGGCCGCGCTCATAGAC 60.038 55.000 5.56 0.00 0.00 2.59
720 749 4.266070 GGCCGCGCTCATAGACGA 62.266 66.667 5.56 0.00 0.00 4.20
721 750 2.278596 GCCGCGCTCATAGACGAA 60.279 61.111 5.56 0.00 0.00 3.85
722 751 1.876714 GCCGCGCTCATAGACGAAA 60.877 57.895 5.56 0.00 0.00 3.46
723 752 1.215655 GCCGCGCTCATAGACGAAAT 61.216 55.000 5.56 0.00 0.00 2.17
724 753 1.209128 CCGCGCTCATAGACGAAATT 58.791 50.000 5.56 0.00 0.00 1.82
725 754 2.390938 CCGCGCTCATAGACGAAATTA 58.609 47.619 5.56 0.00 0.00 1.40
811 863 2.438614 TCTCCGCGAGACTCCCAG 60.439 66.667 8.23 0.00 33.35 4.45
813 865 3.997400 CTCCGCGAGACTCCCAGGA 62.997 68.421 8.23 2.77 0.00 3.86
946 1000 0.457853 GCTCGTTGCTGATCCGTGTA 60.458 55.000 0.00 0.00 38.95 2.90
965 1019 4.625800 GCTCTGCGAATCCAACCT 57.374 55.556 0.00 0.00 0.00 3.50
1068 1122 1.285023 CGAGTTCGAGGACACCGTT 59.715 57.895 0.00 0.00 43.02 4.44
1114 1171 0.836400 TCTCCTCTCCCGCCTTTTGT 60.836 55.000 0.00 0.00 0.00 2.83
1116 1173 1.741770 CCTCTCCCGCCTTTTGTCG 60.742 63.158 0.00 0.00 0.00 4.35
1123 1180 1.515081 CCGCCTTTTGTCGTTCCTTA 58.485 50.000 0.00 0.00 0.00 2.69
1137 1194 2.034436 TCCTTAGTTTCCCCCGAACT 57.966 50.000 0.00 0.00 40.28 3.01
1146 1203 2.815647 CCCCGAACTGCTCTTCGC 60.816 66.667 9.93 0.00 41.44 4.70
1190 1247 4.150897 TGCCTGTGGTGGTTAATATCTC 57.849 45.455 0.00 0.00 0.00 2.75
1192 1249 3.431766 GCCTGTGGTGGTTAATATCTCGT 60.432 47.826 0.00 0.00 0.00 4.18
1316 1374 1.001406 CCTCCTGATCTATTGGTCGGC 59.999 57.143 0.00 0.00 0.00 5.54
1330 1388 0.030235 GTCGGCCCGATTTATTTGGC 59.970 55.000 10.04 0.00 43.26 4.52
1332 1390 0.248866 CGGCCCGATTTATTTGGCAC 60.249 55.000 0.00 0.00 45.83 5.01
1334 1392 1.480545 GGCCCGATTTATTTGGCACTT 59.519 47.619 0.00 0.00 45.83 3.16
1336 1394 2.539476 CCCGATTTATTTGGCACTTGC 58.461 47.619 0.00 0.00 41.14 4.01
1339 1397 2.539476 GATTTATTTGGCACTTGCGGG 58.461 47.619 0.00 0.00 43.26 6.13
1353 1411 2.811747 CGGGCGCGTTGTGATACA 60.812 61.111 15.94 0.00 0.00 2.29
1356 1414 0.458889 GGGCGCGTTGTGATACAGTA 60.459 55.000 8.43 0.00 0.00 2.74
1536 1594 2.475200 ACTTTGTTGTGCTTCGCTTC 57.525 45.000 0.00 0.00 0.00 3.86
1571 1629 2.336554 AGCGCATGTTTAAGTTGCTG 57.663 45.000 11.47 1.65 34.23 4.41
1664 1725 7.094805 GGAGCTGACTGAGTATACTAGAATCTG 60.095 44.444 5.09 6.85 0.00 2.90
1667 1728 7.860373 GCTGACTGAGTATACTAGAATCTGTTG 59.140 40.741 5.09 3.09 0.00 3.33
1673 1734 8.188799 TGAGTATACTAGAATCTGTTGTTTCCG 58.811 37.037 5.09 0.00 0.00 4.30
1698 1759 8.233868 CGTGTTAGGATGTGAATGTCAAAATTA 58.766 33.333 0.00 0.00 0.00 1.40
1700 1761 9.906660 TGTTAGGATGTGAATGTCAAAATTAAC 57.093 29.630 0.00 0.00 0.00 2.01
1707 1768 4.279671 TGAATGTCAAAATTAACGGCACCT 59.720 37.500 0.00 0.00 0.00 4.00
1720 1864 2.434336 ACGGCACCTCAGAGCATAATAA 59.566 45.455 0.00 0.00 0.00 1.40
1723 1867 4.153117 CGGCACCTCAGAGCATAATAAATC 59.847 45.833 0.00 0.00 0.00 2.17
1778 1922 6.488006 AGACATAAATGTATCATGGCAAGGTC 59.512 38.462 0.00 0.00 41.95 3.85
1780 1924 3.281727 AATGTATCATGGCAAGGTCGT 57.718 42.857 0.00 0.00 0.00 4.34
1811 1956 4.023193 AGCATGTTTACCTCAAGTTTTCCG 60.023 41.667 0.00 0.00 0.00 4.30
1856 2001 5.766222 CAAATTGCTCAATAGGTAGCCATC 58.234 41.667 0.00 0.00 37.97 3.51
1886 2031 8.394121 GGCATCTATAATAAGCTAATTGCAGTC 58.606 37.037 0.00 0.00 45.94 3.51
1887 2032 8.113062 GCATCTATAATAAGCTAATTGCAGTCG 58.887 37.037 0.00 0.00 45.94 4.18
1892 2037 6.494893 AATAAGCTAATTGCAGTCGTCAAA 57.505 33.333 0.00 0.00 45.94 2.69
1906 2051 5.282510 AGTCGTCAAACTGAAGTTCTACTG 58.717 41.667 4.17 0.00 37.25 2.74
1911 2056 6.255887 CGTCAAACTGAAGTTCTACTGTTCTT 59.744 38.462 4.17 0.00 37.25 2.52
1912 2057 7.201530 CGTCAAACTGAAGTTCTACTGTTCTTT 60.202 37.037 4.17 0.00 37.25 2.52
1965 2110 4.009675 CCAAGCTTATTGGCTACACTTGA 58.990 43.478 0.00 0.00 42.24 3.02
1966 2111 4.095483 CCAAGCTTATTGGCTACACTTGAG 59.905 45.833 0.00 0.00 42.24 3.02
1979 2125 1.534595 CACTTGAGCTCCTTGCACTTC 59.465 52.381 12.15 0.00 45.94 3.01
1994 2140 2.819115 CACTTCGTCCCAGATCATCAG 58.181 52.381 0.00 0.00 0.00 2.90
1996 2142 3.381590 CACTTCGTCCCAGATCATCAGTA 59.618 47.826 0.00 0.00 0.00 2.74
2023 2169 8.996024 AAAAACTGTAACATGTTGTTTAGCTT 57.004 26.923 21.42 10.78 41.45 3.74
2024 2170 7.985634 AAACTGTAACATGTTGTTTAGCTTG 57.014 32.000 21.42 3.82 41.45 4.01
2037 2189 5.890334 TGTTTAGCTTGAGGAGTTTGTTTG 58.110 37.500 0.00 0.00 0.00 2.93
2355 2507 6.032094 CCTGTTAGAAGTTAAAGCATGCATG 58.968 40.000 22.70 22.70 0.00 4.06
2484 2682 7.495279 AGTGCTGATCTTATCTTGATGTTCTTC 59.505 37.037 0.00 0.00 0.00 2.87
2624 2822 1.202687 CGCCTGAAGATCCATGCCTTA 60.203 52.381 0.00 0.00 0.00 2.69
2625 2823 2.551721 CGCCTGAAGATCCATGCCTTAT 60.552 50.000 0.00 0.00 0.00 1.73
2626 2824 2.818432 GCCTGAAGATCCATGCCTTATG 59.182 50.000 0.00 0.00 36.50 1.90
2653 2854 7.658982 TCTCCATTTTCATATCTTTCTGATCCG 59.341 37.037 0.00 0.00 36.65 4.18
2748 2949 4.079730 GGGGTTAGGAAGTTTGATGGAGAT 60.080 45.833 0.00 0.00 0.00 2.75
2830 3031 5.562696 CGGTTATCTTGTTGCACTTGATTGT 60.563 40.000 0.00 0.00 0.00 2.71
2831 3032 5.858581 GGTTATCTTGTTGCACTTGATTGTC 59.141 40.000 0.00 0.00 0.00 3.18
2832 3033 6.437928 GTTATCTTGTTGCACTTGATTGTCA 58.562 36.000 0.00 0.00 0.00 3.58
2833 3034 5.717078 ATCTTGTTGCACTTGATTGTCAT 57.283 34.783 0.00 0.00 0.00 3.06
2834 3035 5.518848 TCTTGTTGCACTTGATTGTCATT 57.481 34.783 0.00 0.00 0.00 2.57
2835 3036 5.904941 TCTTGTTGCACTTGATTGTCATTT 58.095 33.333 0.00 0.00 0.00 2.32
2836 3037 5.978919 TCTTGTTGCACTTGATTGTCATTTC 59.021 36.000 0.00 0.00 0.00 2.17
2837 3038 5.518848 TGTTGCACTTGATTGTCATTTCT 57.481 34.783 0.00 0.00 0.00 2.52
2838 3039 6.631971 TGTTGCACTTGATTGTCATTTCTA 57.368 33.333 0.00 0.00 0.00 2.10
2839 3040 7.036996 TGTTGCACTTGATTGTCATTTCTAA 57.963 32.000 0.00 0.00 0.00 2.10
2840 3041 7.660112 TGTTGCACTTGATTGTCATTTCTAAT 58.340 30.769 0.00 0.00 0.00 1.73
2841 3042 8.143193 TGTTGCACTTGATTGTCATTTCTAATT 58.857 29.630 0.00 0.00 0.00 1.40
2842 3043 8.430063 GTTGCACTTGATTGTCATTTCTAATTG 58.570 33.333 0.00 0.00 0.00 2.32
2843 3044 7.884257 TGCACTTGATTGTCATTTCTAATTGA 58.116 30.769 0.00 0.00 0.00 2.57
2844 3045 8.024865 TGCACTTGATTGTCATTTCTAATTGAG 58.975 33.333 0.00 0.00 0.00 3.02
2845 3046 7.008992 GCACTTGATTGTCATTTCTAATTGAGC 59.991 37.037 0.00 0.00 0.00 4.26
2846 3047 7.217636 CACTTGATTGTCATTTCTAATTGAGCG 59.782 37.037 0.00 0.00 0.00 5.03
2847 3048 6.741992 TGATTGTCATTTCTAATTGAGCGT 57.258 33.333 0.00 0.00 0.00 5.07
2848 3049 7.144722 TGATTGTCATTTCTAATTGAGCGTT 57.855 32.000 0.00 0.00 0.00 4.84
2849 3050 7.022979 TGATTGTCATTTCTAATTGAGCGTTG 58.977 34.615 0.00 0.00 0.00 4.10
2850 3051 4.722194 TGTCATTTCTAATTGAGCGTTGC 58.278 39.130 0.00 0.00 0.00 4.17
2851 3052 4.455533 TGTCATTTCTAATTGAGCGTTGCT 59.544 37.500 0.00 0.00 43.88 3.91
2852 3053 5.641636 TGTCATTTCTAATTGAGCGTTGCTA 59.358 36.000 0.00 0.00 39.88 3.49
2853 3054 5.960105 GTCATTTCTAATTGAGCGTTGCTAC 59.040 40.000 0.00 0.00 39.88 3.58
2854 3055 5.641636 TCATTTCTAATTGAGCGTTGCTACA 59.358 36.000 0.00 0.00 39.88 2.74
2855 3056 6.316140 TCATTTCTAATTGAGCGTTGCTACAT 59.684 34.615 0.00 0.00 39.88 2.29
2856 3057 5.469373 TTCTAATTGAGCGTTGCTACATG 57.531 39.130 0.00 0.00 39.88 3.21
2857 3058 4.503910 TCTAATTGAGCGTTGCTACATGT 58.496 39.130 2.69 2.69 39.88 3.21
2858 3059 5.656480 TCTAATTGAGCGTTGCTACATGTA 58.344 37.500 5.25 5.25 39.88 2.29
2859 3060 6.103330 TCTAATTGAGCGTTGCTACATGTAA 58.897 36.000 7.06 0.00 39.88 2.41
2860 3061 4.864916 ATTGAGCGTTGCTACATGTAAG 57.135 40.909 7.06 2.80 39.88 2.34
2861 3062 3.586100 TGAGCGTTGCTACATGTAAGA 57.414 42.857 7.06 0.00 39.88 2.10
2862 3063 3.250744 TGAGCGTTGCTACATGTAAGAC 58.749 45.455 7.06 5.15 39.88 3.01
2863 3064 2.603560 GAGCGTTGCTACATGTAAGACC 59.396 50.000 7.06 0.00 39.88 3.85
2864 3065 2.028476 AGCGTTGCTACATGTAAGACCA 60.028 45.455 7.06 0.00 36.99 4.02
2865 3066 2.739913 GCGTTGCTACATGTAAGACCAA 59.260 45.455 7.06 5.60 0.00 3.67
2866 3067 3.181520 GCGTTGCTACATGTAAGACCAAG 60.182 47.826 7.06 0.00 0.00 3.61
2867 3068 4.242475 CGTTGCTACATGTAAGACCAAGA 58.758 43.478 7.06 0.00 0.00 3.02
2868 3069 4.870426 CGTTGCTACATGTAAGACCAAGAT 59.130 41.667 7.06 0.00 0.00 2.40
2869 3070 5.351465 CGTTGCTACATGTAAGACCAAGATT 59.649 40.000 7.06 0.00 0.00 2.40
2870 3071 6.546395 GTTGCTACATGTAAGACCAAGATTG 58.454 40.000 7.06 0.00 0.00 2.67
2871 3072 5.804639 TGCTACATGTAAGACCAAGATTGT 58.195 37.500 7.06 0.00 0.00 2.71
2872 3073 6.941857 TGCTACATGTAAGACCAAGATTGTA 58.058 36.000 7.06 0.00 0.00 2.41
2873 3074 6.816640 TGCTACATGTAAGACCAAGATTGTAC 59.183 38.462 7.06 0.00 0.00 2.90
2874 3075 6.019801 GCTACATGTAAGACCAAGATTGTACG 60.020 42.308 7.06 0.00 0.00 3.67
2875 3076 6.032956 ACATGTAAGACCAAGATTGTACGA 57.967 37.500 0.00 0.00 0.00 3.43
2876 3077 6.640518 ACATGTAAGACCAAGATTGTACGAT 58.359 36.000 0.00 0.00 0.00 3.73
2877 3078 7.103641 ACATGTAAGACCAAGATTGTACGATT 58.896 34.615 0.00 0.00 0.00 3.34
2878 3079 7.606456 ACATGTAAGACCAAGATTGTACGATTT 59.394 33.333 0.00 0.00 0.00 2.17
2879 3080 9.093970 CATGTAAGACCAAGATTGTACGATTTA 57.906 33.333 0.00 0.00 0.00 1.40
2880 3081 9.832445 ATGTAAGACCAAGATTGTACGATTTAT 57.168 29.630 0.00 0.00 0.00 1.40
2881 3082 9.093970 TGTAAGACCAAGATTGTACGATTTATG 57.906 33.333 0.00 0.00 0.00 1.90
2882 3083 9.095065 GTAAGACCAAGATTGTACGATTTATGT 57.905 33.333 0.00 0.00 0.00 2.29
2884 3085 8.644318 AGACCAAGATTGTACGATTTATGTAC 57.356 34.615 0.00 0.00 41.97 2.90
2885 3086 7.434307 AGACCAAGATTGTACGATTTATGTACG 59.566 37.037 0.00 0.00 44.00 3.67
2886 3087 7.259882 ACCAAGATTGTACGATTTATGTACGA 58.740 34.615 0.00 0.00 44.00 3.43
2887 3088 7.221452 ACCAAGATTGTACGATTTATGTACGAC 59.779 37.037 0.00 0.00 44.00 4.34
2888 3089 7.221259 CCAAGATTGTACGATTTATGTACGACA 59.779 37.037 0.00 0.00 44.00 4.35
2889 3090 8.588789 CAAGATTGTACGATTTATGTACGACAA 58.411 33.333 0.00 0.00 44.00 3.18
2890 3091 8.692110 AGATTGTACGATTTATGTACGACAAA 57.308 30.769 0.00 0.00 44.00 2.83
2891 3092 8.589629 AGATTGTACGATTTATGTACGACAAAC 58.410 33.333 0.00 0.00 44.00 2.93
2892 3093 7.634809 TTGTACGATTTATGTACGACAAACA 57.365 32.000 0.00 0.00 44.00 2.83
2893 3094 7.268186 TGTACGATTTATGTACGACAAACAG 57.732 36.000 0.00 0.00 44.00 3.16
2894 3095 5.199424 ACGATTTATGTACGACAAACAGC 57.801 39.130 0.00 0.00 0.00 4.40
2895 3096 4.687018 ACGATTTATGTACGACAAACAGCA 59.313 37.500 0.00 0.00 0.00 4.41
2896 3097 5.163992 ACGATTTATGTACGACAAACAGCAG 60.164 40.000 0.00 0.00 0.00 4.24
2897 3098 4.398549 TTTATGTACGACAAACAGCAGC 57.601 40.909 0.00 0.00 0.00 5.25
2898 3099 1.877637 ATGTACGACAAACAGCAGCA 58.122 45.000 0.00 0.00 0.00 4.41
2899 3100 1.217001 TGTACGACAAACAGCAGCAG 58.783 50.000 0.00 0.00 0.00 4.24
2900 3101 0.110644 GTACGACAAACAGCAGCAGC 60.111 55.000 0.00 0.00 42.56 5.25
2910 3111 3.991999 GCAGCAGCTGTTGGATGA 58.008 55.556 28.73 0.00 37.91 2.92
2911 3112 2.260247 GCAGCAGCTGTTGGATGAA 58.740 52.632 28.73 0.00 37.91 2.57
2912 3113 0.815734 GCAGCAGCTGTTGGATGAAT 59.184 50.000 28.73 0.00 37.91 2.57
2913 3114 1.203994 GCAGCAGCTGTTGGATGAATT 59.796 47.619 28.73 0.00 37.91 2.17
2914 3115 2.734492 GCAGCAGCTGTTGGATGAATTC 60.734 50.000 28.73 8.50 37.91 2.17
2915 3116 2.097825 AGCAGCTGTTGGATGAATTCC 58.902 47.619 16.64 0.00 45.69 3.01
2924 3125 1.609208 GGATGAATTCCGTGGATGGG 58.391 55.000 2.27 0.00 33.93 4.00
2925 3126 1.133792 GGATGAATTCCGTGGATGGGT 60.134 52.381 2.27 0.00 33.93 4.51
2926 3127 1.949525 GATGAATTCCGTGGATGGGTG 59.050 52.381 2.27 0.00 0.00 4.61
2927 3128 0.988063 TGAATTCCGTGGATGGGTGA 59.012 50.000 2.27 0.00 0.00 4.02
2928 3129 1.065491 TGAATTCCGTGGATGGGTGAG 60.065 52.381 2.27 0.00 0.00 3.51
2929 3130 1.209504 GAATTCCGTGGATGGGTGAGA 59.790 52.381 0.00 0.00 0.00 3.27
2930 3131 1.511613 ATTCCGTGGATGGGTGAGAT 58.488 50.000 0.00 0.00 0.00 2.75
2931 3132 0.830648 TTCCGTGGATGGGTGAGATC 59.169 55.000 0.00 0.00 0.00 2.75
2932 3133 0.325203 TCCGTGGATGGGTGAGATCA 60.325 55.000 0.00 0.00 0.00 2.92
2933 3134 0.761187 CCGTGGATGGGTGAGATCAT 59.239 55.000 0.00 0.00 0.00 2.45
2934 3135 1.270518 CCGTGGATGGGTGAGATCATC 60.271 57.143 0.00 0.00 39.08 2.92
2935 3136 1.690893 CGTGGATGGGTGAGATCATCT 59.309 52.381 0.00 0.00 39.57 2.90
2936 3137 2.288702 CGTGGATGGGTGAGATCATCTC 60.289 54.545 7.83 7.83 43.65 2.75
2937 3138 1.966354 TGGATGGGTGAGATCATCTCG 59.034 52.381 10.19 0.00 46.25 4.04
2938 3139 1.967066 GGATGGGTGAGATCATCTCGT 59.033 52.381 10.19 0.00 46.25 4.18
2939 3140 3.157881 GGATGGGTGAGATCATCTCGTA 58.842 50.000 10.19 0.00 46.25 3.43
2940 3141 3.766591 GGATGGGTGAGATCATCTCGTAT 59.233 47.826 10.19 1.86 46.25 3.06
2941 3142 4.381398 GGATGGGTGAGATCATCTCGTATG 60.381 50.000 10.19 0.00 46.25 2.39
2942 3143 2.893489 TGGGTGAGATCATCTCGTATGG 59.107 50.000 10.19 0.00 46.25 2.74
2943 3144 3.157881 GGGTGAGATCATCTCGTATGGA 58.842 50.000 10.19 0.00 46.25 3.41
2944 3145 3.574396 GGGTGAGATCATCTCGTATGGAA 59.426 47.826 10.19 0.00 46.25 3.53
2945 3146 4.039245 GGGTGAGATCATCTCGTATGGAAA 59.961 45.833 10.19 0.00 46.25 3.13
2946 3147 5.279708 GGGTGAGATCATCTCGTATGGAAAT 60.280 44.000 10.19 0.00 46.25 2.17
2947 3148 6.071334 GGGTGAGATCATCTCGTATGGAAATA 60.071 42.308 10.19 0.00 46.25 1.40
2948 3149 7.032580 GGTGAGATCATCTCGTATGGAAATAG 58.967 42.308 10.19 0.00 46.25 1.73
2949 3150 7.309499 GGTGAGATCATCTCGTATGGAAATAGT 60.309 40.741 10.19 0.00 46.25 2.12
2950 3151 8.731605 GTGAGATCATCTCGTATGGAAATAGTA 58.268 37.037 10.19 0.00 46.25 1.82
2951 3152 8.731605 TGAGATCATCTCGTATGGAAATAGTAC 58.268 37.037 10.19 0.00 46.25 2.73
2952 3153 8.057536 AGATCATCTCGTATGGAAATAGTACC 57.942 38.462 0.00 0.00 0.00 3.34
2953 3154 6.585695 TCATCTCGTATGGAAATAGTACCC 57.414 41.667 0.00 0.00 0.00 3.69
2954 3155 5.182570 TCATCTCGTATGGAAATAGTACCCG 59.817 44.000 0.00 0.00 0.00 5.28
2955 3156 4.717877 TCTCGTATGGAAATAGTACCCGA 58.282 43.478 0.00 0.00 0.00 5.14
2956 3157 4.516698 TCTCGTATGGAAATAGTACCCGAC 59.483 45.833 0.00 0.00 0.00 4.79
2957 3158 4.464008 TCGTATGGAAATAGTACCCGACT 58.536 43.478 0.00 0.00 42.69 4.18
2958 3159 4.889409 TCGTATGGAAATAGTACCCGACTT 59.111 41.667 0.00 0.00 39.81 3.01
2959 3160 5.009010 TCGTATGGAAATAGTACCCGACTTC 59.991 44.000 0.00 0.00 39.81 3.01
2960 3161 5.221106 CGTATGGAAATAGTACCCGACTTCA 60.221 44.000 0.00 0.00 39.81 3.02
2961 3162 5.888982 ATGGAAATAGTACCCGACTTCAT 57.111 39.130 0.00 0.00 39.81 2.57
2962 3163 5.272283 TGGAAATAGTACCCGACTTCATC 57.728 43.478 0.00 0.00 39.81 2.92
2971 3172 3.598678 CGACTTCATCGTACGCAGA 57.401 52.632 11.24 7.91 46.25 4.26
2972 3173 1.457738 CGACTTCATCGTACGCAGAG 58.542 55.000 11.24 8.16 46.25 3.35
2973 3174 1.192793 GACTTCATCGTACGCAGAGC 58.807 55.000 11.24 1.32 0.00 4.09
2974 3175 0.526211 ACTTCATCGTACGCAGAGCA 59.474 50.000 11.24 0.00 0.00 4.26
2975 3176 1.067846 ACTTCATCGTACGCAGAGCAA 60.068 47.619 11.24 0.00 0.00 3.91
2976 3177 2.196749 CTTCATCGTACGCAGAGCAAT 58.803 47.619 11.24 0.00 0.00 3.56
2977 3178 2.293677 TCATCGTACGCAGAGCAATT 57.706 45.000 11.24 0.00 0.00 2.32
2980 3181 0.989164 TCGTACGCAGAGCAATTTCG 59.011 50.000 11.24 0.00 0.00 3.46
2999 3200 9.782028 CAATTTCGTTTCTAATTGTTCAACATG 57.218 29.630 0.00 0.00 37.11 3.21
3000 3201 9.528018 AATTTCGTTTCTAATTGTTCAACATGT 57.472 25.926 0.00 0.00 0.00 3.21
3012 3213 2.959516 TCAACATGTTCTGCCTAGTCG 58.040 47.619 8.48 0.00 0.00 4.18
3013 3214 2.002586 CAACATGTTCTGCCTAGTCGG 58.997 52.381 8.48 0.00 0.00 4.79
3060 3297 4.615949 TGGTATTGTTGTCATGTGTTTGC 58.384 39.130 0.00 0.00 0.00 3.68
3078 3317 5.182570 TGTTTGCGCTCTTCTCTAGTAAGTA 59.817 40.000 9.73 0.00 0.00 2.24
3117 3356 8.469200 ACTTACAATTTGATAACATGATGGTGG 58.531 33.333 0.00 0.00 0.00 4.61
3119 3358 7.104043 ACAATTTGATAACATGATGGTGGAG 57.896 36.000 0.00 0.00 0.00 3.86
3130 3369 3.149981 TGATGGTGGAGTATCTCTAGCG 58.850 50.000 7.54 0.00 41.26 4.26
3148 3393 4.732285 AGCGGCTTTGATTAATATGACG 57.268 40.909 0.00 0.00 0.00 4.35
3193 3438 0.033109 AACTTTAGGGGGCCTGATGC 60.033 55.000 0.84 0.00 34.61 3.91
3296 3541 2.434884 CGTGAGGCCGTGAGCAAT 60.435 61.111 0.00 0.00 46.50 3.56
3297 3542 2.743752 CGTGAGGCCGTGAGCAATG 61.744 63.158 0.00 0.00 46.50 2.82
3298 3543 2.747460 TGAGGCCGTGAGCAATGC 60.747 61.111 0.00 0.00 46.50 3.56
3299 3544 2.437359 GAGGCCGTGAGCAATGCT 60.437 61.111 7.79 7.79 46.50 3.79
3300 3545 2.749044 AGGCCGTGAGCAATGCTG 60.749 61.111 14.48 0.00 46.50 4.41
3303 3548 2.620112 GCCGTGAGCAATGCTGTGT 61.620 57.895 14.48 0.00 39.88 3.72
3307 3552 1.800586 CGTGAGCAATGCTGTGTAGTT 59.199 47.619 14.48 0.00 39.88 2.24
3331 3580 4.719106 GCTGCAGCAGTGGAGGCT 62.719 66.667 33.36 0.00 42.29 4.58
3346 3595 2.017782 GAGGCTGTCAGTGATAGTCGA 58.982 52.381 17.12 0.00 30.84 4.20
3363 3612 1.439644 GAGGACAGCGTGGAGGATC 59.560 63.158 0.00 0.00 0.00 3.36
3365 3614 1.040339 AGGACAGCGTGGAGGATCTC 61.040 60.000 0.00 0.00 33.73 2.75
3368 3617 1.251527 ACAGCGTGGAGGATCTCGTT 61.252 55.000 0.00 0.00 35.66 3.85
3371 3620 1.519455 CGTGGAGGATCTCGTTGGC 60.519 63.158 0.00 0.00 33.73 4.52
3429 3705 0.683504 GAGGAGTTAGAGGTGCCGGA 60.684 60.000 5.05 0.00 0.00 5.14
3437 3713 0.322546 AGAGGTGCCGGATTTTGACC 60.323 55.000 5.05 0.00 0.00 4.02
3440 3716 0.038618 GGTGCCGGATTTTGACCAAC 60.039 55.000 5.05 0.00 0.00 3.77
3445 3721 1.196808 CCGGATTTTGACCAACGTGAG 59.803 52.381 0.00 0.00 0.00 3.51
3448 3724 2.225727 GGATTTTGACCAACGTGAGACC 59.774 50.000 0.00 0.00 0.00 3.85
3454 3730 0.178533 ACCAACGTGAGACCGGAAAA 59.821 50.000 9.46 0.00 0.00 2.29
3456 3732 0.865769 CAACGTGAGACCGGAAAAGG 59.134 55.000 9.46 0.00 37.30 3.11
3459 3735 1.270147 ACGTGAGACCGGAAAAGGAAG 60.270 52.381 9.46 0.00 34.73 3.46
3461 3737 2.689646 GTGAGACCGGAAAAGGAAGAG 58.310 52.381 9.46 0.00 34.73 2.85
3462 3738 2.037381 GTGAGACCGGAAAAGGAAGAGT 59.963 50.000 9.46 0.00 34.73 3.24
3494 3885 1.515020 GTGCGATGAGAGTGAGGCT 59.485 57.895 0.00 0.00 0.00 4.58
3517 3908 1.674322 GGCTGGGCGCTTCTTGTTA 60.674 57.895 7.64 0.00 39.13 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.615365 TCATATGACCAACATAAAAGCTTTCCT 59.385 33.333 13.10 0.00 43.47 3.36
1 2 7.771183 TCATATGACCAACATAAAAGCTTTCC 58.229 34.615 13.10 0.00 43.47 3.13
12 13 3.496692 CCCCGACATCATATGACCAACAT 60.497 47.826 7.78 0.00 42.39 2.71
18 19 2.872038 GCCTTCCCCGACATCATATGAC 60.872 54.545 7.78 0.00 0.00 3.06
20 21 1.611673 GGCCTTCCCCGACATCATATG 60.612 57.143 0.00 0.00 0.00 1.78
62 63 8.154649 TGTTTTAGTTTCAGTCATCCTTCTTC 57.845 34.615 0.00 0.00 0.00 2.87
73 74 6.784031 AGGATCCATCTGTTTTAGTTTCAGT 58.216 36.000 15.82 0.00 0.00 3.41
75 76 7.230747 TGAAGGATCCATCTGTTTTAGTTTCA 58.769 34.615 17.46 8.95 0.00 2.69
84 93 2.747467 CGCCATGAAGGATCCATCTGTT 60.747 50.000 17.46 0.47 41.22 3.16
100 109 3.118454 CGTTTCGTCTGCCGCCAT 61.118 61.111 0.00 0.00 36.19 4.40
105 114 2.434359 CCTCCCGTTTCGTCTGCC 60.434 66.667 0.00 0.00 0.00 4.85
108 117 1.292541 GCTTCCTCCCGTTTCGTCT 59.707 57.895 0.00 0.00 0.00 4.18
117 126 1.446366 GACCATACCGCTTCCTCCC 59.554 63.158 0.00 0.00 0.00 4.30
136 145 1.270465 TGCTCCCATATGATCACGCAG 60.270 52.381 3.65 0.00 0.00 5.18
218 230 2.994699 CCCCCTCACGTATGGCAA 59.005 61.111 0.00 0.00 0.00 4.52
253 270 9.844790 TTCAATCATTATTTGCAAGTTACTCAG 57.155 29.630 0.00 0.00 0.00 3.35
260 277 8.362639 AGTCTGTTTCAATCATTATTTGCAAGT 58.637 29.630 0.00 0.00 0.00 3.16
288 305 6.859112 TTCACAAGATTTAGAGCCTCTAGT 57.141 37.500 1.04 0.00 29.56 2.57
312 329 5.611374 TGAAGATCTGTCGTTTCCTCTTTT 58.389 37.500 0.00 0.00 0.00 2.27
323 341 9.360093 ACTAGAAAACTATTTGAAGATCTGTCG 57.640 33.333 0.00 0.00 0.00 4.35
353 371 9.045223 CGTTGATCCATGAGTAAAATAATCTCA 57.955 33.333 0.00 0.00 41.43 3.27
354 372 8.499162 CCGTTGATCCATGAGTAAAATAATCTC 58.501 37.037 0.00 0.00 0.00 2.75
355 373 8.210946 TCCGTTGATCCATGAGTAAAATAATCT 58.789 33.333 0.00 0.00 0.00 2.40
356 374 8.378172 TCCGTTGATCCATGAGTAAAATAATC 57.622 34.615 0.00 0.00 0.00 1.75
357 375 8.746052 TTCCGTTGATCCATGAGTAAAATAAT 57.254 30.769 0.00 0.00 0.00 1.28
358 376 8.568676 TTTCCGTTGATCCATGAGTAAAATAA 57.431 30.769 0.00 0.00 0.00 1.40
359 377 8.746052 ATTTCCGTTGATCCATGAGTAAAATA 57.254 30.769 0.00 0.00 0.00 1.40
360 378 7.557719 AGATTTCCGTTGATCCATGAGTAAAAT 59.442 33.333 0.00 0.00 0.00 1.82
361 379 6.884295 AGATTTCCGTTGATCCATGAGTAAAA 59.116 34.615 0.00 0.00 0.00 1.52
362 380 6.414732 AGATTTCCGTTGATCCATGAGTAAA 58.585 36.000 0.00 0.00 0.00 2.01
363 381 5.989477 AGATTTCCGTTGATCCATGAGTAA 58.011 37.500 0.00 0.00 0.00 2.24
364 382 5.614324 AGATTTCCGTTGATCCATGAGTA 57.386 39.130 0.00 0.00 0.00 2.59
365 383 4.494091 AGATTTCCGTTGATCCATGAGT 57.506 40.909 0.00 0.00 0.00 3.41
378 396 7.434307 ACGTATGTGAGTAATACAAGATTTCCG 59.566 37.037 0.00 0.00 31.94 4.30
390 408 9.817809 ATTTTGACTATGACGTATGTGAGTAAT 57.182 29.630 0.00 0.00 0.00 1.89
393 411 9.817809 ATTATTTTGACTATGACGTATGTGAGT 57.182 29.630 0.00 0.00 0.00 3.41
429 447 2.875296 TCTACCAAAAACTGCCAGCAT 58.125 42.857 0.00 0.00 0.00 3.79
432 450 4.554723 CGAAGTTCTACCAAAAACTGCCAG 60.555 45.833 0.56 0.00 35.93 4.85
439 457 4.156190 TGCAACACGAAGTTCTACCAAAAA 59.844 37.500 0.56 0.00 41.61 1.94
442 460 2.610374 GTGCAACACGAAGTTCTACCAA 59.390 45.455 0.56 0.00 41.61 3.67
449 467 1.535462 GCCATAGTGCAACACGAAGTT 59.465 47.619 0.00 0.00 41.61 2.66
456 474 0.911769 AGCCTAGCCATAGTGCAACA 59.088 50.000 0.00 0.00 41.43 3.33
469 487 3.420893 CCTCATCAGGTCTAGAGCCTAG 58.579 54.545 18.14 9.02 34.60 3.02
470 488 3.517296 CCTCATCAGGTCTAGAGCCTA 57.483 52.381 18.14 7.27 34.60 3.93
471 489 2.380064 CCTCATCAGGTCTAGAGCCT 57.620 55.000 18.14 12.41 34.60 4.58
506 529 5.798934 CACGTAGCAAAGTTACTATCGAAGT 59.201 40.000 0.00 0.00 42.62 3.01
518 541 7.900782 ATTTGTATTACTCACGTAGCAAAGT 57.099 32.000 0.00 0.00 32.58 2.66
519 542 9.607285 AAAATTTGTATTACTCACGTAGCAAAG 57.393 29.630 0.00 0.00 32.58 2.77
570 593 2.104170 AGAAAACCACCGCTCCAAAAA 58.896 42.857 0.00 0.00 0.00 1.94
571 594 1.770294 AGAAAACCACCGCTCCAAAA 58.230 45.000 0.00 0.00 0.00 2.44
572 595 1.770294 AAGAAAACCACCGCTCCAAA 58.230 45.000 0.00 0.00 0.00 3.28
573 596 1.770294 AAAGAAAACCACCGCTCCAA 58.230 45.000 0.00 0.00 0.00 3.53
574 597 1.770294 AAAAGAAAACCACCGCTCCA 58.230 45.000 0.00 0.00 0.00 3.86
575 598 2.882927 AAAAAGAAAACCACCGCTCC 57.117 45.000 0.00 0.00 0.00 4.70
594 617 2.357637 CACCGCTCCAGTTTCTCAAAAA 59.642 45.455 0.00 0.00 0.00 1.94
595 618 1.946768 CACCGCTCCAGTTTCTCAAAA 59.053 47.619 0.00 0.00 0.00 2.44
596 619 1.593196 CACCGCTCCAGTTTCTCAAA 58.407 50.000 0.00 0.00 0.00 2.69
597 620 0.250295 CCACCGCTCCAGTTTCTCAA 60.250 55.000 0.00 0.00 0.00 3.02
598 621 1.118965 TCCACCGCTCCAGTTTCTCA 61.119 55.000 0.00 0.00 0.00 3.27
599 622 0.250513 ATCCACCGCTCCAGTTTCTC 59.749 55.000 0.00 0.00 0.00 2.87
600 623 1.568504 TATCCACCGCTCCAGTTTCT 58.431 50.000 0.00 0.00 0.00 2.52
601 624 2.396590 TTATCCACCGCTCCAGTTTC 57.603 50.000 0.00 0.00 0.00 2.78
602 625 2.871096 TTTATCCACCGCTCCAGTTT 57.129 45.000 0.00 0.00 0.00 2.66
603 626 2.711542 CTTTTATCCACCGCTCCAGTT 58.288 47.619 0.00 0.00 0.00 3.16
604 627 1.679032 GCTTTTATCCACCGCTCCAGT 60.679 52.381 0.00 0.00 0.00 4.00
605 628 1.017387 GCTTTTATCCACCGCTCCAG 58.983 55.000 0.00 0.00 0.00 3.86
606 629 0.393808 GGCTTTTATCCACCGCTCCA 60.394 55.000 0.00 0.00 0.00 3.86
607 630 0.393808 TGGCTTTTATCCACCGCTCC 60.394 55.000 0.00 0.00 0.00 4.70
608 631 0.733150 GTGGCTTTTATCCACCGCTC 59.267 55.000 0.89 0.00 46.26 5.03
609 632 2.868253 GTGGCTTTTATCCACCGCT 58.132 52.632 0.89 0.00 46.26 5.52
614 637 6.663093 AGAATGTGTTATGTGGCTTTTATCCA 59.337 34.615 0.00 0.00 0.00 3.41
615 638 7.100458 AGAATGTGTTATGTGGCTTTTATCC 57.900 36.000 0.00 0.00 0.00 2.59
616 639 8.986477 AAAGAATGTGTTATGTGGCTTTTATC 57.014 30.769 0.00 0.00 0.00 1.75
643 666 1.677576 TCAATGAAGATGGGATTGCGC 59.322 47.619 0.00 0.00 0.00 6.09
644 667 4.374843 TTTCAATGAAGATGGGATTGCG 57.625 40.909 0.00 0.00 0.00 4.85
645 668 4.569564 GCTTTTCAATGAAGATGGGATTGC 59.430 41.667 0.00 0.00 0.00 3.56
677 706 2.164338 GTTCTTTCGGGGTTGCCATTA 58.836 47.619 0.00 0.00 0.00 1.90
680 709 1.894756 CGTTCTTTCGGGGTTGCCA 60.895 57.895 0.00 0.00 0.00 4.92
715 744 1.014352 GGCCGCATGTAATTTCGTCT 58.986 50.000 0.00 0.00 0.00 4.18
716 745 0.028902 GGGCCGCATGTAATTTCGTC 59.971 55.000 0.00 0.00 0.00 4.20
718 747 1.010125 CGGGCCGCATGTAATTTCG 60.010 57.895 15.42 0.00 0.00 3.46
720 749 2.781158 GCCGGGCCGCATGTAATTT 61.781 57.895 23.20 0.00 0.00 1.82
721 750 3.216292 GCCGGGCCGCATGTAATT 61.216 61.111 23.20 0.00 0.00 1.40
811 863 1.205055 CTAGGGTTTGGGAGGAGTCC 58.795 60.000 0.00 0.00 43.05 3.85
813 865 1.265454 CGCTAGGGTTTGGGAGGAGT 61.265 60.000 0.00 0.00 0.00 3.85
1095 1149 0.836400 ACAAAAGGCGGGAGAGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
1114 1171 0.609662 CGGGGGAAACTAAGGAACGA 59.390 55.000 0.00 0.00 0.00 3.85
1116 1173 2.039480 AGTTCGGGGGAAACTAAGGAAC 59.961 50.000 0.00 0.00 35.25 3.62
1123 1180 1.128188 AGAGCAGTTCGGGGGAAACT 61.128 55.000 0.00 0.00 37.44 2.66
1146 1203 3.969287 TCAGACCTTGACAGATCCAAG 57.031 47.619 3.86 3.86 40.37 3.61
1190 1247 2.076863 CCAGGTCAAAGAAAGCCTACG 58.923 52.381 0.00 0.00 0.00 3.51
1192 1249 3.248024 TCTCCAGGTCAAAGAAAGCCTA 58.752 45.455 0.00 0.00 0.00 3.93
1316 1374 2.539476 GCAAGTGCCAAATAAATCGGG 58.461 47.619 0.00 0.00 34.31 5.14
1334 1392 4.743975 TATCACAACGCGCCCGCA 62.744 61.111 5.73 0.00 42.06 5.69
1336 1394 2.798501 CTGTATCACAACGCGCCCG 61.799 63.158 5.73 0.00 41.14 6.13
1339 1397 1.320555 CACTACTGTATCACAACGCGC 59.679 52.381 5.73 0.00 0.00 6.86
1364 1422 2.154567 ACATCCATCTGGCTGCAAAT 57.845 45.000 0.50 0.00 34.82 2.32
1509 1567 5.328691 CGAAGCACAACAAAGTAAACAAGA 58.671 37.500 0.00 0.00 0.00 3.02
1536 1594 2.995939 TGCGCTTAGACAGAAACTGATG 59.004 45.455 9.73 0.00 35.18 3.07
1622 1680 5.921408 GTCAGCTCCCAATAACGTATCTAAG 59.079 44.000 0.00 0.00 0.00 2.18
1664 1725 3.810941 TCACATCCTAACACGGAAACAAC 59.189 43.478 0.00 0.00 36.49 3.32
1667 1728 4.454504 ACATTCACATCCTAACACGGAAAC 59.545 41.667 0.00 0.00 36.49 2.78
1673 1734 9.906660 TTAATTTTGACATTCACATCCTAACAC 57.093 29.630 0.00 0.00 0.00 3.32
1698 1759 0.613260 TTATGCTCTGAGGTGCCGTT 59.387 50.000 6.83 0.00 0.00 4.44
1700 1761 2.820059 TATTATGCTCTGAGGTGCCG 57.180 50.000 6.83 0.00 0.00 5.69
1707 1768 8.735692 TGATGTTGTGATTTATTATGCTCTGA 57.264 30.769 0.00 0.00 0.00 3.27
1720 1864 9.896645 ACTTCATAGACTAATGATGTTGTGATT 57.103 29.630 0.00 0.00 39.77 2.57
1769 1913 1.138859 CTCATGGATACGACCTTGCCA 59.861 52.381 0.00 0.00 42.51 4.92
1778 1922 4.380531 AGGTAAACATGCTCATGGATACG 58.619 43.478 13.69 0.00 42.91 3.06
1780 1924 5.628797 TGAGGTAAACATGCTCATGGATA 57.371 39.130 13.69 4.33 42.91 2.59
1811 1956 6.297694 TGCTTTCATTTAAATGCAACCAAC 57.702 33.333 21.15 8.69 36.36 3.77
1856 2001 7.693951 GCAATTAGCTTATTATAGATGCCAACG 59.306 37.037 0.00 0.00 41.15 4.10
1886 2031 5.749109 AGAACAGTAGAACTTCAGTTTGACG 59.251 40.000 0.00 0.00 38.56 4.35
1887 2032 7.541122 AAGAACAGTAGAACTTCAGTTTGAC 57.459 36.000 0.00 0.00 38.56 3.18
1921 2066 6.065374 TGGAGGCAAAGATTTACAGTACAAA 58.935 36.000 0.00 0.00 0.00 2.83
1979 2125 6.986817 AGTTTTTATACTGATGATCTGGGACG 59.013 38.462 4.35 0.00 0.00 4.79
2344 2496 4.221262 ACCAAATGAGTACATGCATGCTTT 59.779 37.500 26.53 11.67 36.79 3.51
2347 2499 3.441163 CACCAAATGAGTACATGCATGC 58.559 45.455 26.53 11.82 36.79 4.06
2355 2507 1.470098 CTGCAGCCACCAAATGAGTAC 59.530 52.381 0.00 0.00 0.00 2.73
2424 2587 0.907486 AGTGCAAGATGCTGCTAGGA 59.093 50.000 0.00 0.00 45.31 2.94
2454 2651 8.192743 ACATCAAGATAAGATCAGCACTAGAT 57.807 34.615 0.00 0.00 0.00 1.98
2484 2682 3.370953 CCTTTGGGTCCAAGTAGATCTGG 60.371 52.174 5.18 0.00 37.24 3.86
2624 2822 9.863650 ATCAGAAAGATATGAAAATGGAGACAT 57.136 29.630 0.00 0.00 44.57 3.06
2625 2823 9.334947 GATCAGAAAGATATGAAAATGGAGACA 57.665 33.333 0.00 0.00 40.76 3.41
2626 2824 8.782144 GGATCAGAAAGATATGAAAATGGAGAC 58.218 37.037 0.00 0.00 37.00 3.36
2653 2854 3.399330 TGAGACCTCGACCAAAACATTC 58.601 45.455 0.00 0.00 0.00 2.67
2748 2949 3.181482 ACATTGTTCACGTTCATTGCCAA 60.181 39.130 0.00 0.00 0.00 4.52
2830 3031 5.641636 TGTAGCAACGCTCAATTAGAAATGA 59.358 36.000 0.00 0.00 40.44 2.57
2831 3032 5.868257 TGTAGCAACGCTCAATTAGAAATG 58.132 37.500 0.00 0.00 40.44 2.32
2832 3033 6.094048 ACATGTAGCAACGCTCAATTAGAAAT 59.906 34.615 0.00 0.00 40.44 2.17
2833 3034 5.411361 ACATGTAGCAACGCTCAATTAGAAA 59.589 36.000 0.00 0.00 40.44 2.52
2834 3035 4.935205 ACATGTAGCAACGCTCAATTAGAA 59.065 37.500 0.00 0.00 40.44 2.10
2835 3036 4.503910 ACATGTAGCAACGCTCAATTAGA 58.496 39.130 0.00 0.00 40.44 2.10
2836 3037 4.864916 ACATGTAGCAACGCTCAATTAG 57.135 40.909 0.00 0.00 40.44 1.73
2837 3038 6.035650 GTCTTACATGTAGCAACGCTCAATTA 59.964 38.462 5.56 0.00 40.44 1.40
2838 3039 4.935205 TCTTACATGTAGCAACGCTCAATT 59.065 37.500 5.56 0.00 40.44 2.32
2839 3040 4.330074 GTCTTACATGTAGCAACGCTCAAT 59.670 41.667 5.56 0.00 40.44 2.57
2840 3041 3.678072 GTCTTACATGTAGCAACGCTCAA 59.322 43.478 5.56 0.00 40.44 3.02
2841 3042 3.250744 GTCTTACATGTAGCAACGCTCA 58.749 45.455 5.56 0.00 40.44 4.26
2842 3043 2.603560 GGTCTTACATGTAGCAACGCTC 59.396 50.000 5.56 0.00 40.44 5.03
2843 3044 2.028476 TGGTCTTACATGTAGCAACGCT 60.028 45.455 5.56 0.00 43.41 5.07
2844 3045 2.343101 TGGTCTTACATGTAGCAACGC 58.657 47.619 5.56 2.12 0.00 4.84
2845 3046 4.242475 TCTTGGTCTTACATGTAGCAACG 58.758 43.478 5.56 4.48 0.00 4.10
2846 3047 6.149474 ACAATCTTGGTCTTACATGTAGCAAC 59.851 38.462 5.56 5.85 0.00 4.17
2847 3048 6.237901 ACAATCTTGGTCTTACATGTAGCAA 58.762 36.000 5.56 8.43 0.00 3.91
2848 3049 5.804639 ACAATCTTGGTCTTACATGTAGCA 58.195 37.500 5.56 0.00 0.00 3.49
2849 3050 6.019801 CGTACAATCTTGGTCTTACATGTAGC 60.020 42.308 5.56 0.00 0.00 3.58
2850 3051 7.255569 TCGTACAATCTTGGTCTTACATGTAG 58.744 38.462 5.56 1.19 0.00 2.74
2851 3052 7.160547 TCGTACAATCTTGGTCTTACATGTA 57.839 36.000 0.08 0.08 0.00 2.29
2852 3053 6.032956 TCGTACAATCTTGGTCTTACATGT 57.967 37.500 2.69 2.69 0.00 3.21
2853 3054 7.539712 AATCGTACAATCTTGGTCTTACATG 57.460 36.000 0.00 0.00 0.00 3.21
2854 3055 9.832445 ATAAATCGTACAATCTTGGTCTTACAT 57.168 29.630 0.00 0.00 0.00 2.29
2855 3056 9.093970 CATAAATCGTACAATCTTGGTCTTACA 57.906 33.333 0.00 0.00 0.00 2.41
2856 3057 9.095065 ACATAAATCGTACAATCTTGGTCTTAC 57.905 33.333 0.00 0.00 0.00 2.34
2858 3059 9.095065 GTACATAAATCGTACAATCTTGGTCTT 57.905 33.333 0.00 0.00 39.24 3.01
2859 3060 7.434307 CGTACATAAATCGTACAATCTTGGTCT 59.566 37.037 0.00 0.00 39.36 3.85
2860 3061 7.433131 TCGTACATAAATCGTACAATCTTGGTC 59.567 37.037 0.00 0.00 39.36 4.02
2861 3062 7.221452 GTCGTACATAAATCGTACAATCTTGGT 59.779 37.037 0.00 0.00 39.36 3.67
2862 3063 7.221259 TGTCGTACATAAATCGTACAATCTTGG 59.779 37.037 0.00 0.00 39.36 3.61
2863 3064 8.110970 TGTCGTACATAAATCGTACAATCTTG 57.889 34.615 0.00 0.00 39.36 3.02
2864 3065 8.692110 TTGTCGTACATAAATCGTACAATCTT 57.308 30.769 0.00 0.00 39.36 2.40
2865 3066 8.589629 GTTTGTCGTACATAAATCGTACAATCT 58.410 33.333 0.00 0.00 39.36 2.40
2866 3067 8.374728 TGTTTGTCGTACATAAATCGTACAATC 58.625 33.333 0.00 0.00 39.36 2.67
2867 3068 8.242085 TGTTTGTCGTACATAAATCGTACAAT 57.758 30.769 0.00 0.00 39.36 2.71
2868 3069 7.619776 GCTGTTTGTCGTACATAAATCGTACAA 60.620 37.037 0.00 0.00 39.36 2.41
2869 3070 6.183360 GCTGTTTGTCGTACATAAATCGTACA 60.183 38.462 0.00 0.00 39.36 2.90
2870 3071 6.173724 GCTGTTTGTCGTACATAAATCGTAC 58.826 40.000 0.00 0.00 36.66 3.67
2871 3072 5.862860 TGCTGTTTGTCGTACATAAATCGTA 59.137 36.000 0.00 0.00 0.00 3.43
2872 3073 4.687018 TGCTGTTTGTCGTACATAAATCGT 59.313 37.500 0.00 0.00 0.00 3.73
2873 3074 5.198116 TGCTGTTTGTCGTACATAAATCG 57.802 39.130 0.00 0.00 0.00 3.34
2874 3075 5.022021 GCTGCTGTTTGTCGTACATAAATC 58.978 41.667 0.00 0.00 0.00 2.17
2875 3076 4.454161 TGCTGCTGTTTGTCGTACATAAAT 59.546 37.500 0.00 0.00 0.00 1.40
2876 3077 3.810386 TGCTGCTGTTTGTCGTACATAAA 59.190 39.130 0.00 0.00 0.00 1.40
2877 3078 3.394719 TGCTGCTGTTTGTCGTACATAA 58.605 40.909 0.00 0.00 0.00 1.90
2878 3079 2.993220 CTGCTGCTGTTTGTCGTACATA 59.007 45.455 0.00 0.00 0.00 2.29
2879 3080 1.800586 CTGCTGCTGTTTGTCGTACAT 59.199 47.619 0.00 0.00 0.00 2.29
2880 3081 1.217001 CTGCTGCTGTTTGTCGTACA 58.783 50.000 0.00 0.00 0.00 2.90
2881 3082 0.110644 GCTGCTGCTGTTTGTCGTAC 60.111 55.000 8.53 0.00 36.03 3.67
2882 3083 2.234613 GCTGCTGCTGTTTGTCGTA 58.765 52.632 8.53 0.00 36.03 3.43
2883 3084 3.025619 GCTGCTGCTGTTTGTCGT 58.974 55.556 8.53 0.00 36.03 4.34
2893 3094 0.815734 ATTCATCCAACAGCTGCTGC 59.184 50.000 28.39 7.62 34.37 5.25
2894 3095 3.146618 GAATTCATCCAACAGCTGCTG 57.853 47.619 27.02 27.02 37.52 4.41
2905 3106 1.133792 ACCCATCCACGGAATTCATCC 60.134 52.381 7.93 0.00 45.57 3.51
2906 3107 1.949525 CACCCATCCACGGAATTCATC 59.050 52.381 7.93 0.00 0.00 2.92
2907 3108 1.563879 TCACCCATCCACGGAATTCAT 59.436 47.619 7.93 0.00 0.00 2.57
2908 3109 0.988063 TCACCCATCCACGGAATTCA 59.012 50.000 7.93 0.00 0.00 2.57
2909 3110 1.209504 TCTCACCCATCCACGGAATTC 59.790 52.381 0.00 0.00 0.00 2.17
2910 3111 1.285280 TCTCACCCATCCACGGAATT 58.715 50.000 0.00 0.00 0.00 2.17
2911 3112 1.417890 GATCTCACCCATCCACGGAAT 59.582 52.381 0.00 0.00 0.00 3.01
2912 3113 0.830648 GATCTCACCCATCCACGGAA 59.169 55.000 0.00 0.00 0.00 4.30
2913 3114 0.325203 TGATCTCACCCATCCACGGA 60.325 55.000 0.00 0.00 0.00 4.69
2914 3115 0.761187 ATGATCTCACCCATCCACGG 59.239 55.000 0.00 0.00 0.00 4.94
2915 3116 1.690893 AGATGATCTCACCCATCCACG 59.309 52.381 0.00 0.00 39.85 4.94
2916 3117 2.288702 CGAGATGATCTCACCCATCCAC 60.289 54.545 21.22 0.00 43.55 4.02
2917 3118 1.966354 CGAGATGATCTCACCCATCCA 59.034 52.381 21.22 0.00 43.55 3.41
2918 3119 1.967066 ACGAGATGATCTCACCCATCC 59.033 52.381 21.22 0.00 43.55 3.51
2919 3120 4.381398 CCATACGAGATGATCTCACCCATC 60.381 50.000 21.22 0.52 43.55 3.51
2920 3121 3.513119 CCATACGAGATGATCTCACCCAT 59.487 47.826 21.22 6.31 43.55 4.00
2921 3122 2.893489 CCATACGAGATGATCTCACCCA 59.107 50.000 21.22 4.33 43.55 4.51
2922 3123 3.157881 TCCATACGAGATGATCTCACCC 58.842 50.000 21.22 0.00 43.55 4.61
2923 3124 4.855715 TTCCATACGAGATGATCTCACC 57.144 45.455 21.22 0.00 43.55 4.02
2924 3125 7.598278 ACTATTTCCATACGAGATGATCTCAC 58.402 38.462 21.22 0.00 43.55 3.51
2925 3126 7.767250 ACTATTTCCATACGAGATGATCTCA 57.233 36.000 21.22 4.19 43.55 3.27
2926 3127 8.185505 GGTACTATTTCCATACGAGATGATCTC 58.814 40.741 12.38 12.38 40.06 2.75
2927 3128 7.122948 GGGTACTATTTCCATACGAGATGATCT 59.877 40.741 0.00 0.00 0.00 2.75
2928 3129 7.259161 GGGTACTATTTCCATACGAGATGATC 58.741 42.308 0.00 0.00 0.00 2.92
2929 3130 6.127703 CGGGTACTATTTCCATACGAGATGAT 60.128 42.308 0.00 0.00 0.00 2.45
2930 3131 5.182570 CGGGTACTATTTCCATACGAGATGA 59.817 44.000 0.00 0.00 0.00 2.92
2931 3132 5.182570 TCGGGTACTATTTCCATACGAGATG 59.817 44.000 0.00 0.00 0.00 2.90
2932 3133 5.182760 GTCGGGTACTATTTCCATACGAGAT 59.817 44.000 0.00 0.00 0.00 2.75
2933 3134 4.516698 GTCGGGTACTATTTCCATACGAGA 59.483 45.833 0.00 0.00 0.00 4.04
2934 3135 4.518211 AGTCGGGTACTATTTCCATACGAG 59.482 45.833 0.00 0.00 36.36 4.18
2935 3136 4.464008 AGTCGGGTACTATTTCCATACGA 58.536 43.478 0.00 0.00 36.36 3.43
2936 3137 4.843220 AGTCGGGTACTATTTCCATACG 57.157 45.455 0.00 0.00 36.36 3.06
2937 3138 6.152932 TGAAGTCGGGTACTATTTCCATAC 57.847 41.667 0.00 0.00 37.50 2.39
2938 3139 6.294342 CGATGAAGTCGGGTACTATTTCCATA 60.294 42.308 0.00 0.00 46.47 2.74
2939 3140 5.509163 CGATGAAGTCGGGTACTATTTCCAT 60.509 44.000 0.00 0.00 46.47 3.41
2940 3141 4.202080 CGATGAAGTCGGGTACTATTTCCA 60.202 45.833 0.00 0.00 46.47 3.53
2941 3142 4.296690 CGATGAAGTCGGGTACTATTTCC 58.703 47.826 0.00 0.00 46.47 3.13
2954 3155 1.192793 GCTCTGCGTACGATGAAGTC 58.807 55.000 21.65 0.00 0.00 3.01
2955 3156 0.526211 TGCTCTGCGTACGATGAAGT 59.474 50.000 21.65 0.00 0.00 3.01
2956 3157 1.629013 TTGCTCTGCGTACGATGAAG 58.371 50.000 21.65 10.91 0.00 3.02
2957 3158 2.293677 ATTGCTCTGCGTACGATGAA 57.706 45.000 21.65 2.32 0.00 2.57
2958 3159 2.293677 AATTGCTCTGCGTACGATGA 57.706 45.000 21.65 14.40 0.00 2.92
2959 3160 2.595188 CGAAATTGCTCTGCGTACGATG 60.595 50.000 21.65 10.55 0.00 3.84
2960 3161 1.588404 CGAAATTGCTCTGCGTACGAT 59.412 47.619 21.65 0.00 0.00 3.73
2961 3162 0.989164 CGAAATTGCTCTGCGTACGA 59.011 50.000 21.65 3.19 0.00 3.43
2962 3163 0.713883 ACGAAATTGCTCTGCGTACG 59.286 50.000 11.84 11.84 32.94 3.67
2963 3164 2.875080 AACGAAATTGCTCTGCGTAC 57.125 45.000 0.00 0.00 34.46 3.67
2964 3165 3.064207 AGAAACGAAATTGCTCTGCGTA 58.936 40.909 0.00 0.00 34.46 4.42
2965 3166 1.873591 AGAAACGAAATTGCTCTGCGT 59.126 42.857 0.00 0.00 36.68 5.24
2966 3167 2.601481 AGAAACGAAATTGCTCTGCG 57.399 45.000 0.00 0.00 0.00 5.18
2967 3168 5.858581 ACAATTAGAAACGAAATTGCTCTGC 59.141 36.000 7.50 0.00 43.65 4.26
2968 3169 7.591057 TGAACAATTAGAAACGAAATTGCTCTG 59.409 33.333 7.50 0.00 43.65 3.35
2969 3170 7.648142 TGAACAATTAGAAACGAAATTGCTCT 58.352 30.769 7.50 0.00 43.65 4.09
2970 3171 7.851822 TGAACAATTAGAAACGAAATTGCTC 57.148 32.000 7.50 6.12 43.65 4.26
2971 3172 7.704472 TGTTGAACAATTAGAAACGAAATTGCT 59.296 29.630 0.00 0.00 43.65 3.91
2972 3173 7.836512 TGTTGAACAATTAGAAACGAAATTGC 58.163 30.769 0.00 0.00 43.65 3.56
2973 3174 9.782028 CATGTTGAACAATTAGAAACGAAATTG 57.218 29.630 0.62 6.30 44.78 2.32
2974 3175 9.528018 ACATGTTGAACAATTAGAAACGAAATT 57.472 25.926 0.62 0.00 0.00 1.82
2975 3176 9.528018 AACATGTTGAACAATTAGAAACGAAAT 57.472 25.926 11.07 0.00 0.00 2.17
2976 3177 8.918961 AACATGTTGAACAATTAGAAACGAAA 57.081 26.923 11.07 0.00 0.00 3.46
2977 3178 8.402472 AGAACATGTTGAACAATTAGAAACGAA 58.598 29.630 17.58 0.00 0.00 3.85
2980 3181 7.096065 GGCAGAACATGTTGAACAATTAGAAAC 60.096 37.037 17.58 0.00 0.00 2.78
2999 3200 0.320421 TTGCACCGACTAGGCAGAAC 60.320 55.000 0.00 0.00 46.52 3.01
3000 3201 0.613260 ATTGCACCGACTAGGCAGAA 59.387 50.000 0.00 0.00 46.52 3.02
3036 3237 5.695816 GCAAACACATGACAACAATACCAAT 59.304 36.000 0.00 0.00 0.00 3.16
3060 3297 8.963130 CATCAAAATACTTACTAGAGAAGAGCG 58.037 37.037 13.73 0.00 0.00 5.03
3100 3339 7.290948 AGAGATACTCCACCATCATGTTATCAA 59.709 37.037 0.00 0.00 0.00 2.57
3101 3340 6.784473 AGAGATACTCCACCATCATGTTATCA 59.216 38.462 0.00 0.00 0.00 2.15
3103 3342 7.093552 GCTAGAGATACTCCACCATCATGTTAT 60.094 40.741 0.00 0.00 0.00 1.89
3104 3343 6.209589 GCTAGAGATACTCCACCATCATGTTA 59.790 42.308 0.00 0.00 0.00 2.41
3106 3345 4.526262 GCTAGAGATACTCCACCATCATGT 59.474 45.833 0.00 0.00 0.00 3.21
3109 3348 3.149981 CGCTAGAGATACTCCACCATCA 58.850 50.000 0.00 0.00 0.00 3.07
3110 3349 2.490115 CCGCTAGAGATACTCCACCATC 59.510 54.545 0.00 0.00 0.00 3.51
3114 3353 1.611519 AGCCGCTAGAGATACTCCAC 58.388 55.000 0.00 0.00 0.00 4.02
3117 3356 3.992260 TCAAAGCCGCTAGAGATACTC 57.008 47.619 0.00 0.00 0.00 2.59
3119 3358 8.812329 CATATTAATCAAAGCCGCTAGAGATAC 58.188 37.037 0.00 0.00 0.00 2.24
3130 3369 4.537015 GGCACGTCATATTAATCAAAGCC 58.463 43.478 0.00 0.00 0.00 4.35
3148 3393 3.676291 ACATACAATTTTGGTGGGCAC 57.324 42.857 0.00 0.00 0.00 5.01
3181 3426 1.898574 CATTACGCATCAGGCCCCC 60.899 63.158 0.00 0.00 40.31 5.40
3193 3438 2.009051 TGCTGCAACATCTCCATTACG 58.991 47.619 0.00 0.00 0.00 3.18
3224 3469 3.469629 CAATTGCAACGAGTTGTAGACG 58.530 45.455 16.14 0.00 42.31 4.18
3250 3495 1.838112 TGCAAGGGGCTAACAATCAG 58.162 50.000 0.00 0.00 45.15 2.90
3279 3524 2.434884 ATTGCTCACGGCCTCACG 60.435 61.111 0.00 0.00 40.92 4.35
3283 3528 2.749044 CAGCATTGCTCACGGCCT 60.749 61.111 8.54 0.00 36.40 5.19
3286 3531 0.723414 CTACACAGCATTGCTCACGG 59.277 55.000 8.54 0.00 36.40 4.94
3287 3532 1.432514 ACTACACAGCATTGCTCACG 58.567 50.000 8.54 0.10 36.40 4.35
3288 3533 2.095567 CCAACTACACAGCATTGCTCAC 60.096 50.000 8.54 0.00 36.40 3.51
3290 3535 2.417933 CTCCAACTACACAGCATTGCTC 59.582 50.000 8.54 0.00 36.40 4.26
3291 3536 2.430465 CTCCAACTACACAGCATTGCT 58.570 47.619 5.03 5.03 40.77 3.91
3294 3539 1.004745 CCCCTCCAACTACACAGCATT 59.995 52.381 0.00 0.00 0.00 3.56
3296 3541 2.066340 CCCCTCCAACTACACAGCA 58.934 57.895 0.00 0.00 0.00 4.41
3297 3542 1.377333 GCCCCTCCAACTACACAGC 60.377 63.158 0.00 0.00 0.00 4.40
3298 3543 0.036010 CAGCCCCTCCAACTACACAG 60.036 60.000 0.00 0.00 0.00 3.66
3299 3544 2.066340 CAGCCCCTCCAACTACACA 58.934 57.895 0.00 0.00 0.00 3.72
3300 3545 1.377333 GCAGCCCCTCCAACTACAC 60.377 63.158 0.00 0.00 0.00 2.90
3303 3548 2.971598 GCTGCAGCCCCTCCAACTA 61.972 63.158 28.76 0.00 34.31 2.24
3324 3569 2.103373 GACTATCACTGACAGCCTCCA 58.897 52.381 1.25 0.00 0.00 3.86
3331 3580 3.010420 CTGTCCTCGACTATCACTGACA 58.990 50.000 0.00 0.00 33.15 3.58
3346 3595 1.000993 AGATCCTCCACGCTGTCCT 59.999 57.895 0.00 0.00 0.00 3.85
3418 3693 0.322546 GGTCAAAATCCGGCACCTCT 60.323 55.000 0.00 0.00 0.00 3.69
3429 3705 1.871039 CGGTCTCACGTTGGTCAAAAT 59.129 47.619 0.00 0.00 0.00 1.82
3437 3713 0.865769 CCTTTTCCGGTCTCACGTTG 59.134 55.000 0.00 0.00 0.00 4.10
3440 3716 1.000506 TCTTCCTTTTCCGGTCTCACG 59.999 52.381 0.00 0.00 0.00 4.35
3445 3721 2.613223 CCTCACTCTTCCTTTTCCGGTC 60.613 54.545 0.00 0.00 0.00 4.79
3448 3724 1.348036 ACCCTCACTCTTCCTTTTCCG 59.652 52.381 0.00 0.00 0.00 4.30
3454 3730 2.286523 CGCCACCCTCACTCTTCCT 61.287 63.158 0.00 0.00 0.00 3.36
3456 3732 1.079750 GTCGCCACCCTCACTCTTC 60.080 63.158 0.00 0.00 0.00 2.87
3459 3735 4.436998 CCGTCGCCACCCTCACTC 62.437 72.222 0.00 0.00 0.00 3.51
3504 3895 1.135523 GCTGCTAACAAGAAGCGCC 59.864 57.895 2.29 0.00 43.11 6.53
3569 3960 4.899239 CTCCACGCCCGATCAGCC 62.899 72.222 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.