Multiple sequence alignment - TraesCS4B01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G188000 chr4B 100.000 5279 0 0 1 5279 408959793 408965071 0.000000e+00 9749.0
1 TraesCS4B01G188000 chr4D 92.674 3276 133 33 364 3606 329013768 329016969 0.000000e+00 4621.0
2 TraesCS4B01G188000 chr4D 94.521 1442 50 13 3855 5279 329017103 329018532 0.000000e+00 2198.0
3 TraesCS4B01G188000 chr4D 96.923 195 6 0 1 195 329010881 329011075 1.420000e-85 327.0
4 TraesCS4B01G188000 chr4D 97.902 143 3 0 188 330 329013632 329013774 1.140000e-61 248.0
5 TraesCS4B01G188000 chr2D 93.641 2988 118 24 632 3606 407207549 407204621 0.000000e+00 4399.0
6 TraesCS4B01G188000 chr2D 94.452 1442 52 13 3855 5279 407204487 407203057 0.000000e+00 2194.0
7 TraesCS4B01G188000 chr2D 97.879 330 7 0 1 330 407208641 407208970 5.930000e-159 571.0
8 TraesCS4B01G188000 chr2D 94.702 151 7 1 364 514 407208964 407209113 3.180000e-57 233.0
9 TraesCS4B01G188000 chr2D 94.040 151 8 1 364 514 407208065 407207916 1.480000e-55 228.0
10 TraesCS4B01G188000 chr2D 78.894 199 14 11 1 197 634261458 634261630 5.590000e-20 110.0
11 TraesCS4B01G188000 chr2D 95.745 47 2 0 284 330 407208105 407208059 5.670000e-10 76.8
12 TraesCS4B01G188000 chr4A 94.635 1659 43 12 1965 3606 141111930 141110301 0.000000e+00 2529.0
13 TraesCS4B01G188000 chr4A 89.332 1453 70 38 3855 5279 141109930 141108535 0.000000e+00 1746.0
14 TraesCS4B01G188000 chr4A 87.251 1153 60 24 842 1968 141113091 141112000 0.000000e+00 1234.0
15 TraesCS4B01G188000 chr4A 96.400 250 9 0 3606 3855 141110236 141109987 3.800000e-111 412.0
16 TraesCS4B01G188000 chr4A 91.216 148 12 1 195 342 671960012 671960158 3.220000e-47 200.0
17 TraesCS4B01G188000 chr1B 95.431 1576 49 9 2038 3606 135935677 135934118 0.000000e+00 2490.0
18 TraesCS4B01G188000 chr1B 92.978 1424 77 12 639 2056 135937273 135935867 0.000000e+00 2054.0
19 TraesCS4B01G188000 chr1B 93.937 1072 35 9 3855 4917 135933748 135932698 0.000000e+00 1592.0
20 TraesCS4B01G188000 chr1B 94.403 268 11 3 5014 5279 135932701 135932436 4.920000e-110 409.0
21 TraesCS4B01G188000 chr1B 95.200 250 11 1 3606 3855 135934053 135933805 1.380000e-105 394.0
22 TraesCS4B01G188000 chr1B 97.633 169 4 0 1 169 135938146 135937978 1.860000e-74 291.0
23 TraesCS4B01G188000 chr1B 93.789 161 9 1 364 524 135937863 135937704 1.900000e-59 241.0
24 TraesCS4B01G188000 chr1B 96.748 123 4 0 208 330 135937979 135937857 6.930000e-49 206.0
25 TraesCS4B01G188000 chr1B 83.981 206 12 9 1 197 29581303 29581496 1.510000e-40 178.0
26 TraesCS4B01G188000 chr7B 91.711 941 66 5 1088 2025 412539789 412540720 0.000000e+00 1295.0
27 TraesCS4B01G188000 chr7B 91.392 941 69 5 1088 2025 658771411 658772342 0.000000e+00 1279.0
28 TraesCS4B01G188000 chr7B 91.073 941 72 5 1088 2025 658519445 658520376 0.000000e+00 1262.0
29 TraesCS4B01G188000 chr7B 91.073 941 72 5 1088 2025 658644960 658645891 0.000000e+00 1262.0
30 TraesCS4B01G188000 chr7B 84.252 127 16 4 74 197 595525613 595525488 2.580000e-23 121.0
31 TraesCS4B01G188000 chrUn 90.755 941 74 6 1088 2025 228136413 228135483 0.000000e+00 1243.0
32 TraesCS4B01G188000 chrUn 91.139 869 64 6 1160 2025 404788125 404788983 0.000000e+00 1166.0
33 TraesCS4B01G188000 chr2A 91.892 148 11 1 195 342 591660501 591660647 6.930000e-49 206.0
34 TraesCS4B01G188000 chr2A 97.368 38 1 0 1 38 692525691 692525654 1.230000e-06 65.8
35 TraesCS4B01G188000 chr3B 91.216 148 12 1 195 342 730552789 730552935 3.220000e-47 200.0
36 TraesCS4B01G188000 chr5A 90.541 148 13 1 195 342 549015639 549015493 1.500000e-45 195.0
37 TraesCS4B01G188000 chr5A 100.000 36 0 0 1 36 491537681 491537646 3.410000e-07 67.6
38 TraesCS4B01G188000 chr5B 83.415 205 22 7 1 197 595291803 595292003 4.200000e-41 180.0
39 TraesCS4B01G188000 chr1A 79.602 201 24 13 1 197 518050578 518050765 1.540000e-25 128.0
40 TraesCS4B01G188000 chr1A 78.607 201 26 13 1 197 586704703 586704516 3.340000e-22 117.0
41 TraesCS4B01G188000 chr3A 78.607 201 26 13 1 197 54339481 54339294 3.340000e-22 117.0
42 TraesCS4B01G188000 chr3A 78.607 201 26 13 1 197 54365977 54365790 3.340000e-22 117.0
43 TraesCS4B01G188000 chr3D 78.894 199 13 12 1 197 202477793 202477964 2.010000e-19 108.0
44 TraesCS4B01G188000 chr2B 100.000 38 0 0 1 38 436539423 436539386 2.640000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G188000 chr4B 408959793 408965071 5278 False 9749.000 9749 100.000000 1 5279 1 chr4B.!!$F1 5278
1 TraesCS4B01G188000 chr4D 329010881 329018532 7651 False 1848.500 4621 95.505000 1 5279 4 chr4D.!!$F1 5278
2 TraesCS4B01G188000 chr2D 407203057 407208105 5048 True 1724.450 4399 94.469500 284 5279 4 chr2D.!!$R1 4995
3 TraesCS4B01G188000 chr4A 141108535 141113091 4556 True 1480.250 2529 91.904500 842 5279 4 chr4A.!!$R1 4437
4 TraesCS4B01G188000 chr1B 135932436 135938146 5710 True 959.625 2490 95.014875 1 5279 8 chr1B.!!$R1 5278
5 TraesCS4B01G188000 chr7B 412539789 412540720 931 False 1295.000 1295 91.711000 1088 2025 1 chr7B.!!$F1 937
6 TraesCS4B01G188000 chr7B 658771411 658772342 931 False 1279.000 1279 91.392000 1088 2025 1 chr7B.!!$F4 937
7 TraesCS4B01G188000 chr7B 658519445 658520376 931 False 1262.000 1262 91.073000 1088 2025 1 chr7B.!!$F2 937
8 TraesCS4B01G188000 chr7B 658644960 658645891 931 False 1262.000 1262 91.073000 1088 2025 1 chr7B.!!$F3 937
9 TraesCS4B01G188000 chrUn 228135483 228136413 930 True 1243.000 1243 90.755000 1088 2025 1 chrUn.!!$R1 937
10 TraesCS4B01G188000 chrUn 404788125 404788983 858 False 1166.000 1166 91.139000 1160 2025 1 chrUn.!!$F1 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 2906 0.108615 ATCCTCTTCAACGCGTGAGG 60.109 55.0 28.43 28.43 45.36 3.86 F
636 3802 0.179111 CGTTGAGCCCGCTATTGAGA 60.179 55.0 0.00 0.00 0.00 3.27 F
1713 4922 0.031449 GCGGCTGTGTTGGCTTTTAA 59.969 50.0 0.00 0.00 0.00 1.52 F
2852 6357 0.176680 CTGTGCTACCAGCTGTAGGG 59.823 60.0 13.81 0.00 45.97 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 4463 0.675208 TGATGGGCGTTATTGCACGT 60.675 50.0 0.00 0.00 42.71 4.49 R
1803 5012 0.989890 CTTGAGTAGTACGCGTTGGC 59.010 55.0 20.78 8.69 0.00 4.52 R
3173 6678 1.373570 GGTTGTCAGCATCAGCCTAC 58.626 55.0 0.00 0.00 43.56 3.18 R
4716 8364 0.251742 TCCCAAAGGAACATGCCCAG 60.252 55.0 7.39 0.00 40.08 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 7.624549 AGTGTACATAAAGACACAGGATTCAT 58.375 34.615 0.00 0.00 46.83 2.57
123 124 7.565680 TCTAAATCTGAAACATAACTCCCCTC 58.434 38.462 0.00 0.00 0.00 4.30
173 174 6.007076 TGATGCCCATTTAGTAAACTCAACA 58.993 36.000 0.00 0.00 0.00 3.33
294 2859 0.938168 GGCGACGAAACGACAACTCT 60.938 55.000 0.00 0.00 41.34 3.24
299 2864 2.199236 ACGAAACGACAACTCTGGTTC 58.801 47.619 0.00 0.00 32.73 3.62
335 2900 2.100605 AGGAACATCCTCTTCAACGC 57.899 50.000 0.00 0.00 45.66 4.84
336 2901 0.721718 GGAACATCCTCTTCAACGCG 59.278 55.000 3.53 3.53 32.53 6.01
337 2902 1.429463 GAACATCCTCTTCAACGCGT 58.571 50.000 5.58 5.58 0.00 6.01
338 2903 1.126846 GAACATCCTCTTCAACGCGTG 59.873 52.381 14.98 7.52 0.00 5.34
339 2904 0.317160 ACATCCTCTTCAACGCGTGA 59.683 50.000 14.98 10.15 0.00 4.35
340 2905 0.994995 CATCCTCTTCAACGCGTGAG 59.005 55.000 14.98 15.19 37.61 3.51
341 2906 0.108615 ATCCTCTTCAACGCGTGAGG 60.109 55.000 28.43 28.43 45.36 3.86
342 2907 1.289066 CCTCTTCAACGCGTGAGGA 59.711 57.895 29.77 23.25 46.53 3.71
343 2908 4.966005 TCTTCAACGCGTGAGGAG 57.034 55.556 14.98 13.56 37.43 3.69
344 2909 1.289066 TCTTCAACGCGTGAGGAGG 59.711 57.895 14.98 12.00 37.43 4.30
345 2910 2.357034 TTCAACGCGTGAGGAGGC 60.357 61.111 14.98 0.00 37.61 4.70
352 2917 4.504916 CGTGAGGAGGCGCTGGAG 62.505 72.222 7.64 0.00 0.00 3.86
353 2918 4.154347 GTGAGGAGGCGCTGGAGG 62.154 72.222 7.64 0.00 0.00 4.30
354 2919 4.382541 TGAGGAGGCGCTGGAGGA 62.383 66.667 7.64 0.00 0.00 3.71
355 2920 3.077556 GAGGAGGCGCTGGAGGAA 61.078 66.667 7.64 0.00 0.00 3.36
356 2921 3.378399 GAGGAGGCGCTGGAGGAAC 62.378 68.421 7.64 0.00 0.00 3.62
357 2922 3.706373 GGAGGCGCTGGAGGAACA 61.706 66.667 7.64 0.00 0.00 3.18
358 2923 2.125350 GAGGCGCTGGAGGAACAG 60.125 66.667 7.64 0.00 41.41 3.16
365 2930 3.776616 CTGGAGGAACAGCATCTCC 57.223 57.895 0.00 0.00 45.36 3.71
420 2985 2.501128 CGATGTGGAGATGGCGGT 59.499 61.111 0.00 0.00 0.00 5.68
492 3057 1.717937 GCAGTGATGCAGGCGTTAG 59.282 57.895 0.00 0.00 34.41 2.34
563 3484 0.840722 GGAGAAGAGGTGGGGGTGAA 60.841 60.000 0.00 0.00 0.00 3.18
598 3764 0.836400 GAGAAGAGGTGGGGGTGACA 60.836 60.000 0.00 0.00 0.00 3.58
611 3777 2.811747 TGACACGGTTATGCGGCG 60.812 61.111 0.51 0.51 0.00 6.46
630 3796 3.766691 GTCCCGTTGAGCCCGCTA 61.767 66.667 0.00 0.00 0.00 4.26
631 3797 2.762459 TCCCGTTGAGCCCGCTAT 60.762 61.111 0.00 0.00 0.00 2.97
632 3798 2.189521 CCCGTTGAGCCCGCTATT 59.810 61.111 0.00 0.00 0.00 1.73
633 3799 2.180204 CCCGTTGAGCCCGCTATTG 61.180 63.158 0.00 0.00 0.00 1.90
634 3800 1.153449 CCGTTGAGCCCGCTATTGA 60.153 57.895 0.00 0.00 0.00 2.57
635 3801 1.154205 CCGTTGAGCCCGCTATTGAG 61.154 60.000 0.00 0.00 0.00 3.02
636 3802 0.179111 CGTTGAGCCCGCTATTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
637 3803 1.539065 CGTTGAGCCCGCTATTGAGAT 60.539 52.381 0.00 0.00 0.00 2.75
680 3846 3.431725 CGGGCTCTTTTGCGGGAC 61.432 66.667 0.00 0.00 0.00 4.46
707 3873 2.156098 GGCCTGGCAGGATATCCCA 61.156 63.158 37.07 8.46 37.67 4.37
832 4000 4.024809 GGCGAGTGTATATGCCTTTCTTTC 60.025 45.833 0.00 0.00 44.16 2.62
885 4053 6.603237 TTGTCATGTAAACTGAACTGACTG 57.397 37.500 0.00 0.00 35.27 3.51
913 4081 8.380099 ACTTTGGTTTTCATCACTAGTGGTATA 58.620 33.333 22.48 4.66 0.00 1.47
933 4102 6.318900 GGTATATTGGAACCTCTGGTTTTGAG 59.681 42.308 3.34 0.00 46.95 3.02
934 4103 3.662759 TTGGAACCTCTGGTTTTGAGT 57.337 42.857 3.34 0.00 46.95 3.41
935 4104 3.662759 TGGAACCTCTGGTTTTGAGTT 57.337 42.857 3.34 0.00 46.95 3.01
936 4105 3.287222 TGGAACCTCTGGTTTTGAGTTG 58.713 45.455 3.34 0.00 46.95 3.16
950 4119 6.814146 GGTTTTGAGTTGTTGTGGTATTTTGA 59.186 34.615 0.00 0.00 0.00 2.69
981 4173 1.727062 ATTCCGCCTCATCCATCTCT 58.273 50.000 0.00 0.00 0.00 3.10
986 4178 1.871408 CGCCTCATCCATCTCTTTCCG 60.871 57.143 0.00 0.00 0.00 4.30
1005 4199 0.882042 GCCGCAGTTGATCGATGGAT 60.882 55.000 0.54 0.00 34.96 3.41
1018 4212 3.733344 ATGGATCCCAACGCCGACG 62.733 63.158 9.90 0.00 39.62 5.12
1047 4241 0.250513 GTCTTCGCATCACCTCCCTT 59.749 55.000 0.00 0.00 0.00 3.95
1053 4247 0.741221 GCATCACCTCCCTTGACGAC 60.741 60.000 0.00 0.00 0.00 4.34
1096 4290 2.520458 CCAACCAACCTCTGCCCA 59.480 61.111 0.00 0.00 0.00 5.36
1098 4292 1.151450 CAACCAACCTCTGCCCACT 59.849 57.895 0.00 0.00 0.00 4.00
1099 4293 0.400213 CAACCAACCTCTGCCCACTA 59.600 55.000 0.00 0.00 0.00 2.74
1111 4305 4.446413 CCACTACCACCGCGACCC 62.446 72.222 8.23 0.00 0.00 4.46
1140 4340 2.027751 GCCTCGGGCTATGACGAC 59.972 66.667 7.58 0.00 46.69 4.34
1141 4341 2.331805 CCTCGGGCTATGACGACG 59.668 66.667 0.00 0.00 35.04 5.12
1142 4342 2.184830 CCTCGGGCTATGACGACGA 61.185 63.158 0.00 0.00 35.04 4.20
1143 4343 1.280142 CTCGGGCTATGACGACGAG 59.720 63.158 0.00 0.00 43.85 4.18
1305 4512 6.312399 AGCGACACACTTTGATTTTTGATA 57.688 33.333 0.00 0.00 0.00 2.15
1314 4521 8.356657 ACACTTTGATTTTTGATACGATTGGAA 58.643 29.630 0.00 0.00 0.00 3.53
1317 4524 9.357652 CTTTGATTTTTGATACGATTGGAACAT 57.642 29.630 0.00 0.00 39.30 2.71
1331 4539 7.768582 ACGATTGGAACATGTATTAATGTGAGA 59.231 33.333 0.00 0.00 39.89 3.27
1438 4646 0.179020 TGCACTTTGTCCTCCAGGTG 60.179 55.000 0.00 0.00 36.34 4.00
1439 4647 1.518903 GCACTTTGTCCTCCAGGTGC 61.519 60.000 0.00 0.00 42.68 5.01
1442 4650 2.054799 ACTTTGTCCTCCAGGTGCTTA 58.945 47.619 0.00 0.00 36.34 3.09
1501 4709 7.899973 TCTTTCCGGAACTTGTACTAGTTAAT 58.100 34.615 18.64 1.51 38.43 1.40
1562 4771 6.816136 TGTAGATTTATGCTCCGATTGAGAA 58.184 36.000 0.00 0.00 44.42 2.87
1608 4817 1.887854 CTGTTCATGTTCATGTGCCCA 59.112 47.619 11.73 5.09 0.00 5.36
1693 4902 0.535102 AAGGTGAAGCAAGTCCCGTG 60.535 55.000 0.00 0.00 0.00 4.94
1696 4905 3.423154 GAAGCAAGTCCCGTGGCG 61.423 66.667 0.00 0.00 0.00 5.69
1713 4922 0.031449 GCGGCTGTGTTGGCTTTTAA 59.969 50.000 0.00 0.00 0.00 1.52
1716 4925 2.223711 CGGCTGTGTTGGCTTTTAAACT 60.224 45.455 0.00 0.00 0.00 2.66
1717 4926 3.736740 CGGCTGTGTTGGCTTTTAAACTT 60.737 43.478 0.00 0.00 0.00 2.66
1718 4927 4.188462 GGCTGTGTTGGCTTTTAAACTTT 58.812 39.130 0.00 0.00 0.00 2.66
1719 4928 4.270084 GGCTGTGTTGGCTTTTAAACTTTC 59.730 41.667 0.00 0.00 0.00 2.62
1720 4929 4.026886 GCTGTGTTGGCTTTTAAACTTTCG 60.027 41.667 0.00 0.00 0.00 3.46
1721 4930 5.312120 TGTGTTGGCTTTTAAACTTTCGA 57.688 34.783 0.00 0.00 0.00 3.71
1722 4931 5.336744 TGTGTTGGCTTTTAAACTTTCGAG 58.663 37.500 0.00 0.00 0.00 4.04
1793 5002 1.529713 GAGGGTTTTCCGGTGCCAA 60.530 57.895 0.00 0.00 41.82 4.52
1803 5012 3.357079 GGTGCCAACTGCCTCGTG 61.357 66.667 0.00 0.00 40.16 4.35
1893 5102 7.320399 AGGTAGTTTTCCTTTTTGTTCAGTTG 58.680 34.615 0.00 0.00 30.18 3.16
1908 5117 3.273434 TCAGTTGCATGGCATCTTAGAC 58.727 45.455 0.00 0.00 36.60 2.59
1974 5259 7.652300 TTCCTGCATTATGTAGTAATTAGCG 57.348 36.000 9.30 0.00 30.53 4.26
1975 5260 6.755206 TCCTGCATTATGTAGTAATTAGCGT 58.245 36.000 9.30 0.00 30.53 5.07
1976 5261 7.214381 TCCTGCATTATGTAGTAATTAGCGTT 58.786 34.615 9.30 0.00 30.53 4.84
1977 5262 8.361889 TCCTGCATTATGTAGTAATTAGCGTTA 58.638 33.333 9.30 0.00 30.53 3.18
2134 5633 2.806434 TGTTTATGCTGGTTGCTCCAT 58.194 42.857 2.00 0.00 46.12 3.41
2140 5639 3.044235 TGCTGGTTGCTCCATATATCG 57.956 47.619 2.00 0.00 46.12 2.92
2301 5802 5.286438 AGTATATTGACGCGCTTACATTCA 58.714 37.500 5.73 0.00 0.00 2.57
2309 5810 2.348872 CGCGCTTACATTCATAGGCAAG 60.349 50.000 5.56 0.00 0.00 4.01
2310 5811 2.614057 GCGCTTACATTCATAGGCAAGT 59.386 45.455 0.00 0.00 0.00 3.16
2311 5812 3.807622 GCGCTTACATTCATAGGCAAGTA 59.192 43.478 0.00 0.00 0.00 2.24
2312 5813 4.084328 GCGCTTACATTCATAGGCAAGTAG 60.084 45.833 0.00 0.00 0.00 2.57
2313 5814 4.449068 CGCTTACATTCATAGGCAAGTAGG 59.551 45.833 0.00 0.00 0.00 3.18
2314 5815 4.214332 GCTTACATTCATAGGCAAGTAGGC 59.786 45.833 0.00 0.00 44.61 3.93
2335 5836 2.191128 ACAATGGCTGTCTTCTGTCC 57.809 50.000 0.00 0.00 29.87 4.02
2407 5908 6.539649 TGATTTCCTTCGTTTACTTGACTG 57.460 37.500 0.00 0.00 0.00 3.51
2469 5970 7.227355 TGGAAAGGGGATAAAATATGTGGTA 57.773 36.000 0.00 0.00 0.00 3.25
2514 6015 6.768483 TGTTCTGAGAAACATCAGGTATTCA 58.232 36.000 0.00 0.00 45.60 2.57
2601 6105 6.095440 GTCATGTCCAAATATACAGCCTTTGT 59.905 38.462 0.00 0.00 43.96 2.83
2694 6198 1.408702 CTTGGACACCAACCAAACAGG 59.591 52.381 0.00 0.00 45.05 4.00
2700 6204 0.178973 ACCAACCAAACAGGCCCTAC 60.179 55.000 0.00 0.00 43.14 3.18
2701 6205 0.178975 CCAACCAAACAGGCCCTACA 60.179 55.000 0.00 0.00 43.14 2.74
2702 6206 1.549950 CCAACCAAACAGGCCCTACAT 60.550 52.381 0.00 0.00 43.14 2.29
2737 6241 3.814316 GCAACCAGGTCCTACTTTGGATT 60.814 47.826 0.00 0.00 38.52 3.01
2743 6247 6.187682 CCAGGTCCTACTTTGGATTAACAAT 58.812 40.000 0.00 0.00 38.52 2.71
2744 6248 6.318900 CCAGGTCCTACTTTGGATTAACAATC 59.681 42.308 0.00 0.00 38.52 2.67
2840 6345 4.060900 CTGAAGCTTCAAGTTCTGTGCTA 58.939 43.478 28.16 2.54 36.64 3.49
2852 6357 0.176680 CTGTGCTACCAGCTGTAGGG 59.823 60.000 13.81 0.00 45.97 3.53
2873 6378 4.021456 GGGAAAGGTAACCATGTTTGAAGG 60.021 45.833 0.00 0.00 37.17 3.46
2965 6470 0.908198 CCAGCTAGGACTTCTTGGCT 59.092 55.000 0.00 0.00 41.22 4.75
3139 6644 6.570692 CATTCTCTCTTTTATGCTTGCCAAT 58.429 36.000 0.00 0.00 0.00 3.16
3173 6678 8.124823 CCACTGTTTATTCACTGCTATGTTATG 58.875 37.037 0.00 0.00 0.00 1.90
3193 6698 0.108186 TAGGCTGATGCTGACAACCG 60.108 55.000 0.00 0.00 39.59 4.44
3281 6786 4.038271 TGCATGAATCCTCTCCTTGTTT 57.962 40.909 0.00 0.00 0.00 2.83
3498 7007 1.033746 AGCTGGGCGTCCATCAAATG 61.034 55.000 10.40 0.00 43.11 2.32
3584 7094 6.926630 TTTGTCTAGGGCCAAAATATTTGT 57.073 33.333 6.18 0.00 0.00 2.83
3714 7289 4.272991 CCATCTGCTCTCTAAAATGTCTGC 59.727 45.833 0.00 0.00 0.00 4.26
3749 7324 3.792401 TGTTTATGAGCCATCACTACCG 58.208 45.455 0.00 0.00 38.57 4.02
3755 7330 1.204941 GAGCCATCACTACCGTCAGTT 59.795 52.381 0.00 0.00 0.00 3.16
3852 7427 2.049627 ATGCTACTAGGCCAGGCTGC 62.050 60.000 12.43 4.60 0.00 5.25
4029 7669 3.561725 GCCTCCAACATGCTTATCAGTAC 59.438 47.826 0.00 0.00 0.00 2.73
4035 7675 5.220472 CCAACATGCTTATCAGTACTCGTTG 60.220 44.000 0.00 0.00 0.00 4.10
4047 7687 0.400213 ACTCGTTGCATTTCCCTCCA 59.600 50.000 0.00 0.00 0.00 3.86
4054 7694 1.728490 GCATTTCCCTCCATCGTGCC 61.728 60.000 0.00 0.00 0.00 5.01
4058 7698 3.790437 CCCTCCATCGTGCCTGCT 61.790 66.667 0.00 0.00 0.00 4.24
4065 7705 1.867233 CCATCGTGCCTGCTTATACAC 59.133 52.381 0.00 0.00 0.00 2.90
4244 7885 1.067354 CAAGGAAGAGTTTGCATGGGC 60.067 52.381 0.00 0.00 41.68 5.36
4352 7993 5.383476 TCCCCCGATTTAACTTTGTTGTTA 58.617 37.500 0.00 0.00 0.00 2.41
4353 7994 6.011481 TCCCCCGATTTAACTTTGTTGTTAT 58.989 36.000 0.00 0.00 33.16 1.89
4354 7995 6.494146 TCCCCCGATTTAACTTTGTTGTTATT 59.506 34.615 0.00 0.00 33.16 1.40
4482 8124 9.108284 CCACTGTCAAATGTGTATTATGATACA 57.892 33.333 6.24 6.24 44.40 2.29
4645 8287 3.492421 AAGCCTAATTGATGTTGCGTG 57.508 42.857 0.00 0.00 0.00 5.34
4667 8309 4.397103 TGTTTGGATTCTGAAGCTATGCTG 59.603 41.667 5.56 0.00 39.62 4.41
4734 8382 0.251742 TCTGGGCATGTTCCTTTGGG 60.252 55.000 8.34 0.00 0.00 4.12
5008 8756 2.139118 GCGTTCCAAGCCAGATAGATC 58.861 52.381 0.00 0.00 0.00 2.75
5128 8877 7.218228 AGCATTTGATGTGAAATAGTTGTGA 57.782 32.000 0.00 0.00 0.00 3.58
5131 8880 7.756272 GCATTTGATGTGAAATAGTTGTGATCA 59.244 33.333 0.00 0.00 0.00 2.92
5172 8921 9.325198 TCAGTGTGCATCTTTATTTCGTTATAT 57.675 29.630 0.00 0.00 0.00 0.86
5215 8964 0.464735 TGGACACCTTGGACGGTTTG 60.465 55.000 0.00 0.00 34.29 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.845860 AGAGGGTTCTCTCACTGTACAA 58.154 45.455 0.00 0.00 46.79 2.41
123 124 8.883731 AGGATTACTGAATGTTGATTTTACTCG 58.116 33.333 0.00 0.00 0.00 4.18
173 174 5.242795 ACCAAGCAGTAGTTTGTAATCCT 57.757 39.130 0.00 0.00 34.54 3.24
326 2891 1.289066 CCTCCTCACGCGTTGAAGA 59.711 57.895 10.22 9.29 32.21 2.87
327 2892 2.383527 GCCTCCTCACGCGTTGAAG 61.384 63.158 10.22 7.62 32.21 3.02
328 2893 2.357034 GCCTCCTCACGCGTTGAA 60.357 61.111 10.22 0.00 32.21 2.69
329 2894 4.717629 CGCCTCCTCACGCGTTGA 62.718 66.667 10.22 10.23 43.35 3.18
335 2900 4.504916 CTCCAGCGCCTCCTCACG 62.505 72.222 2.29 0.00 0.00 4.35
336 2901 4.154347 CCTCCAGCGCCTCCTCAC 62.154 72.222 2.29 0.00 0.00 3.51
337 2902 3.905153 TTCCTCCAGCGCCTCCTCA 62.905 63.158 2.29 0.00 0.00 3.86
338 2903 3.077556 TTCCTCCAGCGCCTCCTC 61.078 66.667 2.29 0.00 0.00 3.71
339 2904 3.394836 GTTCCTCCAGCGCCTCCT 61.395 66.667 2.29 0.00 0.00 3.69
340 2905 3.672295 CTGTTCCTCCAGCGCCTCC 62.672 68.421 2.29 0.00 0.00 4.30
341 2906 2.125350 CTGTTCCTCCAGCGCCTC 60.125 66.667 2.29 0.00 0.00 4.70
347 2912 3.776616 GGAGATGCTGTTCCTCCAG 57.223 57.895 0.00 0.00 44.42 3.86
349 2914 1.767681 AGATGGAGATGCTGTTCCTCC 59.232 52.381 0.00 0.00 45.07 4.30
350 2915 3.204526 CAAGATGGAGATGCTGTTCCTC 58.795 50.000 3.30 0.00 34.48 3.71
351 2916 2.092538 CCAAGATGGAGATGCTGTTCCT 60.093 50.000 0.00 0.00 40.96 3.36
352 2917 2.092753 TCCAAGATGGAGATGCTGTTCC 60.093 50.000 0.00 0.00 42.67 3.62
353 2918 3.272574 TCCAAGATGGAGATGCTGTTC 57.727 47.619 0.00 0.00 42.67 3.18
363 2928 2.502947 CTCACATGTCCTCCAAGATGGA 59.497 50.000 0.00 0.00 45.98 3.41
364 2929 2.421107 CCTCACATGTCCTCCAAGATGG 60.421 54.545 0.00 0.00 39.43 3.51
365 2930 2.421107 CCCTCACATGTCCTCCAAGATG 60.421 54.545 0.00 0.00 0.00 2.90
366 2931 1.842562 CCCTCACATGTCCTCCAAGAT 59.157 52.381 0.00 0.00 0.00 2.40
377 2942 1.153489 CTCACGCCTCCCTCACATG 60.153 63.158 0.00 0.00 0.00 3.21
379 2944 2.997315 CCTCACGCCTCCCTCACA 60.997 66.667 0.00 0.00 0.00 3.58
403 2968 1.884464 CACCGCCATCTCCACATCG 60.884 63.158 0.00 0.00 0.00 3.84
477 3042 1.421410 CGACCTAACGCCTGCATCAC 61.421 60.000 0.00 0.00 0.00 3.06
554 3475 1.075896 AAAAACCGCTTCACCCCCA 60.076 52.632 0.00 0.00 0.00 4.96
585 3509 2.968902 TAACCGTGTCACCCCCACCT 62.969 60.000 0.00 0.00 0.00 4.00
586 3510 1.844544 ATAACCGTGTCACCCCCACC 61.845 60.000 0.00 0.00 0.00 4.61
587 3511 0.675522 CATAACCGTGTCACCCCCAC 60.676 60.000 0.00 0.00 0.00 4.61
588 3512 1.680487 CATAACCGTGTCACCCCCA 59.320 57.895 0.00 0.00 0.00 4.96
613 3779 2.588856 AATAGCGGGCTCAACGGGAC 62.589 60.000 0.00 0.00 0.00 4.46
627 3793 1.413382 CTGACCGCGATCTCAATAGC 58.587 55.000 8.23 0.00 0.00 2.97
628 3794 1.413382 GCTGACCGCGATCTCAATAG 58.587 55.000 8.23 0.00 0.00 1.73
629 3795 0.032130 GGCTGACCGCGATCTCAATA 59.968 55.000 8.23 0.00 40.44 1.90
630 3796 1.227380 GGCTGACCGCGATCTCAAT 60.227 57.895 8.23 0.00 40.44 2.57
631 3797 2.184322 GGCTGACCGCGATCTCAA 59.816 61.111 8.23 0.00 40.44 3.02
632 3798 3.838271 GGGCTGACCGCGATCTCA 61.838 66.667 8.23 4.13 40.44 3.27
633 3799 3.781770 CTGGGCTGACCGCGATCTC 62.782 68.421 8.23 0.00 44.64 2.75
634 3800 3.842923 CTGGGCTGACCGCGATCT 61.843 66.667 8.23 0.00 44.64 2.75
654 3820 1.111277 AAAAGAGCCCGCAAAACTGT 58.889 45.000 0.00 0.00 0.00 3.55
683 3849 2.963928 TATCCTGCCAGGCCGCAATG 62.964 60.000 9.64 1.76 38.56 2.82
684 3850 2.072874 ATATCCTGCCAGGCCGCAAT 62.073 55.000 9.64 1.64 38.56 3.56
685 3851 2.680974 GATATCCTGCCAGGCCGCAA 62.681 60.000 9.64 0.00 38.56 4.85
697 3863 1.707427 GCAAGGTGGATGGGATATCCT 59.293 52.381 21.18 2.09 38.95 3.24
707 3873 0.606401 CGTCAGGTTGCAAGGTGGAT 60.606 55.000 0.00 0.00 0.00 3.41
799 3965 2.093306 TACACTCGCCCTTTCACATG 57.907 50.000 0.00 0.00 0.00 3.21
800 3966 4.380531 CATATACACTCGCCCTTTCACAT 58.619 43.478 0.00 0.00 0.00 3.21
807 3975 1.424638 AAGGCATATACACTCGCCCT 58.575 50.000 0.00 0.00 46.08 5.19
808 3976 2.143925 GAAAGGCATATACACTCGCCC 58.856 52.381 0.00 0.00 46.08 6.13
832 4000 4.746115 ACTAGCGTCTGTCTAAGATACTCG 59.254 45.833 0.00 0.00 37.23 4.18
885 4053 5.215160 CACTAGTGATGAAAACCAAAGTGC 58.785 41.667 18.45 0.00 0.00 4.40
913 4081 4.184649 ACTCAAAACCAGAGGTTCCAAT 57.815 40.909 1.34 0.00 46.20 3.16
950 4119 2.755103 GAGGCGGAATTGAGAAAATGGT 59.245 45.455 0.00 0.00 0.00 3.55
964 4133 1.414181 GAAAGAGATGGATGAGGCGGA 59.586 52.381 0.00 0.00 0.00 5.54
981 4173 2.387445 CGATCAACTGCGGCGGAAA 61.387 57.895 17.15 0.23 0.00 3.13
986 4178 0.882042 ATCCATCGATCAACTGCGGC 60.882 55.000 0.00 0.00 0.00 6.53
1018 4212 0.736325 ATGCGAAGACCACGTAGCAC 60.736 55.000 0.00 0.00 38.54 4.40
1019 4213 0.457853 GATGCGAAGACCACGTAGCA 60.458 55.000 0.00 0.00 39.64 3.49
1047 4241 1.735571 TCATCATCGTCTTCGTCGTCA 59.264 47.619 0.00 0.00 38.33 4.35
1053 4247 4.623167 AGTTCTGTTTCATCATCGTCTTCG 59.377 41.667 0.00 0.00 38.55 3.79
1068 4262 1.111277 GTTGGTTGGGCAGTTCTGTT 58.889 50.000 1.78 0.00 0.00 3.16
1096 4290 3.379445 CAGGGTCGCGGTGGTAGT 61.379 66.667 6.13 0.00 0.00 2.73
1137 4337 2.294097 CTTCGTCCTCGTCCTCGTCG 62.294 65.000 0.00 0.00 38.33 5.12
1138 4338 1.018226 TCTTCGTCCTCGTCCTCGTC 61.018 60.000 0.00 0.00 38.33 4.20
1139 4339 0.392729 ATCTTCGTCCTCGTCCTCGT 60.393 55.000 0.00 0.00 38.33 4.18
1140 4340 0.028242 CATCTTCGTCCTCGTCCTCG 59.972 60.000 0.00 0.00 38.33 4.63
1141 4341 1.380524 TCATCTTCGTCCTCGTCCTC 58.619 55.000 0.00 0.00 38.33 3.71
1142 4342 1.746220 CTTCATCTTCGTCCTCGTCCT 59.254 52.381 0.00 0.00 38.33 3.85
1143 4343 1.743958 TCTTCATCTTCGTCCTCGTCC 59.256 52.381 0.00 0.00 38.33 4.79
1257 4463 0.675208 TGATGGGCGTTATTGCACGT 60.675 50.000 0.00 0.00 42.71 4.49
1305 4512 7.768582 TCTCACATTAATACATGTTCCAATCGT 59.231 33.333 2.30 0.67 35.03 3.73
1331 4539 5.417580 ACGCCTGGACAAAATACATAAACAT 59.582 36.000 0.00 0.00 0.00 2.71
1337 4545 2.091541 CCACGCCTGGACAAAATACAT 58.908 47.619 0.00 0.00 40.55 2.29
1438 4646 3.074412 TGCTTCTAGGCACAAAGTAAGC 58.926 45.455 0.00 0.00 37.29 3.09
1439 4647 5.886960 ATTGCTTCTAGGCACAAAGTAAG 57.113 39.130 0.00 0.00 42.27 2.34
1442 4650 3.891366 ACAATTGCTTCTAGGCACAAAGT 59.109 39.130 5.05 0.00 42.27 2.66
1522 4730 4.235079 TCTACAGGATCCAAACCCAATG 57.765 45.455 15.82 2.97 0.00 2.82
1693 4902 1.801309 TAAAAGCCAACACAGCCGCC 61.801 55.000 0.00 0.00 0.00 6.13
1696 4905 3.452755 AGTTTAAAAGCCAACACAGCC 57.547 42.857 0.00 0.00 0.00 4.85
1713 4922 6.570692 TGTTTTCAGTCTCTACTCGAAAGTT 58.429 36.000 0.00 0.00 35.79 2.66
1716 4925 8.335356 CAAAATGTTTTCAGTCTCTACTCGAAA 58.665 33.333 0.00 0.00 34.16 3.46
1717 4926 7.518370 GCAAAATGTTTTCAGTCTCTACTCGAA 60.518 37.037 0.00 0.00 31.97 3.71
1718 4927 6.073765 GCAAAATGTTTTCAGTCTCTACTCGA 60.074 38.462 0.00 0.00 31.97 4.04
1719 4928 6.073548 AGCAAAATGTTTTCAGTCTCTACTCG 60.074 38.462 0.00 0.00 31.97 4.18
1720 4929 7.041780 TCAGCAAAATGTTTTCAGTCTCTACTC 60.042 37.037 0.00 0.00 31.97 2.59
1721 4930 6.767902 TCAGCAAAATGTTTTCAGTCTCTACT 59.232 34.615 0.00 0.00 35.91 2.57
1722 4931 6.959361 TCAGCAAAATGTTTTCAGTCTCTAC 58.041 36.000 0.00 0.00 0.00 2.59
1803 5012 0.989890 CTTGAGTAGTACGCGTTGGC 59.010 55.000 20.78 8.69 0.00 4.52
1810 5019 3.504906 TGGAGGTTCACTTGAGTAGTACG 59.495 47.826 0.00 0.00 34.56 3.67
1813 5022 3.967987 ACTTGGAGGTTCACTTGAGTAGT 59.032 43.478 0.00 0.00 37.68 2.73
1893 5102 4.272018 CACAGTAAGTCTAAGATGCCATGC 59.728 45.833 0.00 0.00 0.00 4.06
1908 5117 9.988350 CATACAAAACTTATTAGGCACAGTAAG 57.012 33.333 0.00 0.00 0.00 2.34
1929 5138 7.657354 CAGGAAATGTAGCACTAATAGCATACA 59.343 37.037 3.42 3.42 33.50 2.29
1975 5260 9.905713 ACATAAGCACATTTTCCTCTAGAATAA 57.094 29.630 0.00 0.00 33.44 1.40
1976 5261 9.547753 GACATAAGCACATTTTCCTCTAGAATA 57.452 33.333 0.00 0.00 33.44 1.75
1977 5262 7.500559 GGACATAAGCACATTTTCCTCTAGAAT 59.499 37.037 0.00 0.00 33.44 2.40
1979 5264 6.070251 TGGACATAAGCACATTTTCCTCTAGA 60.070 38.462 0.00 0.00 0.00 2.43
1980 5265 6.115446 TGGACATAAGCACATTTTCCTCTAG 58.885 40.000 0.00 0.00 0.00 2.43
1981 5266 6.061022 TGGACATAAGCACATTTTCCTCTA 57.939 37.500 0.00 0.00 0.00 2.43
1982 5267 4.922206 TGGACATAAGCACATTTTCCTCT 58.078 39.130 0.00 0.00 0.00 3.69
1983 5268 4.439289 GCTGGACATAAGCACATTTTCCTC 60.439 45.833 0.00 0.00 40.52 3.71
2056 5550 7.792374 TGAAGACATAGGAATTCATAAGTGC 57.208 36.000 12.21 5.20 0.00 4.40
2134 5633 4.948341 TTAGAAGCAAGGTGCCGATATA 57.052 40.909 0.00 0.00 46.52 0.86
2140 5639 2.716217 AGACATTAGAAGCAAGGTGCC 58.284 47.619 0.00 0.00 46.52 5.01
2288 5789 1.217001 TGCCTATGAATGTAAGCGCG 58.783 50.000 0.00 0.00 0.00 6.86
2301 5802 3.290710 CCATTGTTGCCTACTTGCCTAT 58.709 45.455 0.00 0.00 0.00 2.57
2309 5810 1.826385 AGACAGCCATTGTTGCCTAC 58.174 50.000 0.00 0.00 41.05 3.18
2310 5811 2.040278 AGAAGACAGCCATTGTTGCCTA 59.960 45.455 0.00 0.00 41.05 3.93
2311 5812 1.202976 AGAAGACAGCCATTGTTGCCT 60.203 47.619 0.00 0.00 41.05 4.75
2312 5813 1.068055 CAGAAGACAGCCATTGTTGCC 60.068 52.381 0.00 0.00 41.05 4.52
2313 5814 1.610522 ACAGAAGACAGCCATTGTTGC 59.389 47.619 0.00 0.00 41.05 4.17
2314 5815 2.227388 GGACAGAAGACAGCCATTGTTG 59.773 50.000 0.00 0.00 41.05 3.33
2315 5816 2.508526 GGACAGAAGACAGCCATTGTT 58.491 47.619 0.00 0.00 41.05 2.83
2316 5817 1.609061 CGGACAGAAGACAGCCATTGT 60.609 52.381 0.00 0.00 44.55 2.71
2324 5825 2.483013 CCAGTTTGACGGACAGAAGACA 60.483 50.000 0.00 0.00 0.00 3.41
2325 5826 2.135933 CCAGTTTGACGGACAGAAGAC 58.864 52.381 0.00 0.00 0.00 3.01
2335 5836 8.335356 CCATCTATTAACATAACCAGTTTGACG 58.665 37.037 0.00 0.00 0.00 4.35
2469 5970 3.187227 CAGTAACGTGATTTCTTGCAGCT 59.813 43.478 0.00 0.00 0.00 4.24
2694 6198 3.690460 CCAAAGGGATATGATGTAGGGC 58.310 50.000 0.00 0.00 35.59 5.19
2700 6204 3.298619 TGGTTGCCAAAGGGATATGATG 58.701 45.455 0.00 0.00 35.59 3.07
2701 6205 3.569491 CTGGTTGCCAAAGGGATATGAT 58.431 45.455 0.00 0.00 35.59 2.45
2702 6206 2.358090 CCTGGTTGCCAAAGGGATATGA 60.358 50.000 0.00 0.00 35.59 2.15
2737 6241 7.442364 CCTGAGAAAGAGTCACAAAGATTGTTA 59.558 37.037 0.00 0.00 43.23 2.41
2743 6247 3.134623 TGCCTGAGAAAGAGTCACAAAGA 59.865 43.478 0.00 0.00 0.00 2.52
2744 6248 3.249559 GTGCCTGAGAAAGAGTCACAAAG 59.750 47.826 0.00 0.00 0.00 2.77
2777 6282 6.212888 AGGCAATCATTTTTATGACCAGAC 57.787 37.500 0.00 0.00 32.79 3.51
2840 6345 2.305052 GTTACCTTTCCCTACAGCTGGT 59.695 50.000 19.93 5.18 0.00 4.00
2852 6357 4.280929 AGCCTTCAAACATGGTTACCTTTC 59.719 41.667 2.07 0.00 0.00 2.62
2924 6429 5.649395 TGGAACTGCAAATAGAGAGGAATTG 59.351 40.000 0.00 0.00 0.00 2.32
2965 6470 5.245977 TCGTCAATGGCTATCTGATATTCCA 59.754 40.000 16.25 16.25 0.00 3.53
2981 6486 5.941733 TCCAAATCAACTTCATCGTCAATG 58.058 37.500 0.00 0.00 36.65 2.82
3139 6644 6.093495 GCAGTGAATAAACAGTGGTTGCTATA 59.907 38.462 2.90 0.00 40.36 1.31
3173 6678 1.373570 GGTTGTCAGCATCAGCCTAC 58.626 55.000 0.00 0.00 43.56 3.18
3281 6786 7.713073 GGGAAAAGTAAATTGAAAACATCACCA 59.287 33.333 0.00 0.00 37.92 4.17
3498 7007 2.158842 AGCTACATGAAGGGATGTCAGC 60.159 50.000 0.00 0.00 37.70 4.26
3714 7289 1.173043 TAAACAGAGCATTTGCCCGG 58.827 50.000 0.00 0.00 43.38 5.73
3780 7355 7.436376 GTGATCGATAACTTCTGAATCATGTCA 59.564 37.037 5.58 0.00 0.00 3.58
3991 7623 2.548875 GAGGCATCACTGACTAAGCAG 58.451 52.381 0.00 0.00 42.39 4.24
4029 7669 1.672881 GATGGAGGGAAATGCAACGAG 59.327 52.381 0.00 0.00 0.00 4.18
4035 7675 1.728490 GGCACGATGGAGGGAAATGC 61.728 60.000 0.00 0.00 0.00 3.56
4047 7687 2.979814 TGTGTATAAGCAGGCACGAT 57.020 45.000 0.00 0.00 34.86 3.73
4065 7705 7.658982 AGTGTAAGGATATGTAAGCACATGATG 59.341 37.037 0.00 0.00 45.17 3.07
4244 7885 8.100508 TGAGATTGACGTAGGATATAACTGAG 57.899 38.462 0.00 0.00 0.00 3.35
4352 7993 8.781196 CATATGCATGAGCTTTTGTAGACTAAT 58.219 33.333 10.16 0.00 42.74 1.73
4353 7994 7.227314 CCATATGCATGAGCTTTTGTAGACTAA 59.773 37.037 10.16 0.00 42.74 2.24
4354 7995 6.707608 CCATATGCATGAGCTTTTGTAGACTA 59.292 38.462 10.16 0.00 42.74 2.59
4413 8054 0.523072 ACATGAAGCATGCCAACGTC 59.477 50.000 15.66 5.07 44.80 4.34
4632 8274 3.940209 ATCCAAACACGCAACATCAAT 57.060 38.095 0.00 0.00 0.00 2.57
4645 8287 4.637534 TCAGCATAGCTTCAGAATCCAAAC 59.362 41.667 0.00 0.00 36.40 2.93
4667 8309 6.369615 AGCAAACAAAATGGTGATTAGCAATC 59.630 34.615 0.00 0.00 37.91 2.67
4716 8364 0.251742 TCCCAAAGGAACATGCCCAG 60.252 55.000 7.39 0.00 40.08 4.45
4889 8583 4.837093 TGGGTTACTAGGACCATCTTTG 57.163 45.455 16.54 0.00 38.98 2.77
5103 8852 8.334263 TCACAACTATTTCACATCAAATGCTA 57.666 30.769 0.00 0.00 0.00 3.49
5172 8921 8.577296 CCACATAAAGAGACGAAGAATCCTATA 58.423 37.037 0.00 0.00 0.00 1.31
5173 8922 7.287927 TCCACATAAAGAGACGAAGAATCCTAT 59.712 37.037 0.00 0.00 0.00 2.57
5215 8964 3.902467 AGAATCCTAACGAGTAATCCCCC 59.098 47.826 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.