Multiple sequence alignment - TraesCS4B01G187800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G187800 chr4B 100.000 2567 0 0 1 2567 408954018 408951452 0.000000e+00 4741.0
1 TraesCS4B01G187800 chr4B 94.483 145 6 2 2067 2209 373995924 373995780 3.320000e-54 222.0
2 TraesCS4B01G187800 chr4B 93.103 145 9 1 2065 2209 545764571 545764428 7.200000e-51 211.0
3 TraesCS4B01G187800 chr4A 91.088 1526 96 22 494 2003 141124170 141125671 0.000000e+00 2028.0
4 TraesCS4B01G187800 chr4A 88.949 371 20 12 2214 2567 141129972 141130338 3.030000e-119 438.0
5 TraesCS4B01G187800 chr4A 88.398 362 28 5 5 360 141123721 141124074 8.490000e-115 424.0
6 TraesCS4B01G187800 chr4A 87.671 73 4 4 1993 2060 141125724 141125796 2.120000e-11 80.5
7 TraesCS4B01G187800 chr1B 91.828 1187 69 16 570 1750 135960178 135961342 0.000000e+00 1629.0
8 TraesCS4B01G187800 chr1B 96.328 463 11 3 1 458 135958788 135959249 0.000000e+00 756.0
9 TraesCS4B01G187800 chr1B 88.618 369 23 8 2214 2567 135962434 135962798 5.070000e-117 431.0
10 TraesCS4B01G187800 chr1B 97.619 42 1 0 510 551 135960137 135960178 3.540000e-09 73.1
11 TraesCS4B01G187800 chr1B 94.444 36 2 0 456 491 135960111 135960146 3.570000e-04 56.5
12 TraesCS4B01G187800 chr1B 97.059 34 0 1 2028 2060 135962382 135962415 3.570000e-04 56.5
13 TraesCS4B01G187800 chr4D 88.837 860 43 26 353 1209 329001243 329000434 0.000000e+00 1007.0
14 TraesCS4B01G187800 chr4D 88.457 823 61 21 1196 2003 329000224 328999421 0.000000e+00 963.0
15 TraesCS4B01G187800 chr4D 94.580 369 13 2 1 365 329005123 329004758 4.790000e-157 564.0
16 TraesCS4B01G187800 chr4D 88.618 369 23 8 2214 2567 328999261 328998897 5.070000e-117 431.0
17 TraesCS4B01G187800 chr4D 94.595 37 1 1 2028 2063 328999313 328999277 3.570000e-04 56.5
18 TraesCS4B01G187800 chr7D 83.452 1124 130 34 651 1762 113714445 113715524 0.000000e+00 994.0
19 TraesCS4B01G187800 chr7D 82.860 1056 132 27 727 1769 113718512 113719531 0.000000e+00 902.0
20 TraesCS4B01G187800 chr2D 87.791 860 52 27 354 1209 407223661 407224471 0.000000e+00 957.0
21 TraesCS4B01G187800 chr2D 88.335 823 62 20 1196 2003 407224489 407225292 0.000000e+00 957.0
22 TraesCS4B01G187800 chr2D 94.851 369 15 1 1 365 407220961 407221329 7.970000e-160 573.0
23 TraesCS4B01G187800 chr2D 88.889 369 22 8 2214 2567 407225453 407225817 1.090000e-118 436.0
24 TraesCS4B01G187800 chr2D 84.848 66 10 0 2499 2564 43797987 43798052 1.650000e-07 67.6
25 TraesCS4B01G187800 chr2D 97.059 34 0 1 2028 2060 407225401 407225434 3.570000e-04 56.5
26 TraesCS4B01G187800 chr7A 82.203 1135 136 39 651 1769 118573634 118574718 0.000000e+00 917.0
27 TraesCS4B01G187800 chr7A 82.375 1061 133 24 720 1769 118578311 118579328 0.000000e+00 874.0
28 TraesCS4B01G187800 chr7B 83.897 1006 105 29 770 1762 73311190 73312151 0.000000e+00 907.0
29 TraesCS4B01G187800 chr7B 83.598 1006 111 27 770 1762 73233455 73234419 0.000000e+00 894.0
30 TraesCS4B01G187800 chr7B 85.377 848 94 14 889 1727 73334806 73335632 0.000000e+00 852.0
31 TraesCS4B01G187800 chr7B 91.333 150 10 2 2063 2209 367495733 367495882 4.330000e-48 202.0
32 TraesCS4B01G187800 chrUn 96.328 463 11 3 1 458 326355524 326355985 0.000000e+00 756.0
33 TraesCS4B01G187800 chr3B 94.595 148 5 2 2065 2209 443348798 443348945 2.570000e-55 226.0
34 TraesCS4B01G187800 chr6B 93.793 145 7 2 2067 2209 664459026 664459170 1.550000e-52 217.0
35 TraesCS4B01G187800 chr1A 93.289 149 7 2 2064 2209 530169966 530170114 1.550000e-52 217.0
36 TraesCS4B01G187800 chr1A 93.103 145 9 1 2066 2209 12264566 12264422 7.200000e-51 211.0
37 TraesCS4B01G187800 chr5B 93.197 147 7 2 2066 2209 440262955 440262809 2.000000e-51 213.0
38 TraesCS4B01G187800 chr2A 93.151 146 8 2 2066 2209 226553716 226553861 2.000000e-51 213.0
39 TraesCS4B01G187800 chr2B 84.848 66 10 0 2499 2564 68422576 68422641 1.650000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G187800 chr4B 408951452 408954018 2566 True 4741.000000 4741 100.000000 1 2567 1 chr4B.!!$R2 2566
1 TraesCS4B01G187800 chr4A 141123721 141125796 2075 False 844.166667 2028 89.052333 5 2060 3 chr4A.!!$F2 2055
2 TraesCS4B01G187800 chr1B 135958788 135962798 4010 False 500.350000 1629 94.316000 1 2567 6 chr1B.!!$F1 2566
3 TraesCS4B01G187800 chr4D 328998897 329005123 6226 True 604.300000 1007 91.017400 1 2567 5 chr4D.!!$R1 2566
4 TraesCS4B01G187800 chr7D 113714445 113719531 5086 False 948.000000 994 83.156000 651 1769 2 chr7D.!!$F1 1118
5 TraesCS4B01G187800 chr2D 407220961 407225817 4856 False 595.900000 957 91.385000 1 2567 5 chr2D.!!$F2 2566
6 TraesCS4B01G187800 chr7A 118573634 118579328 5694 False 895.500000 917 82.289000 651 1769 2 chr7A.!!$F1 1118
7 TraesCS4B01G187800 chr7B 73311190 73312151 961 False 907.000000 907 83.897000 770 1762 1 chr7B.!!$F2 992
8 TraesCS4B01G187800 chr7B 73233455 73234419 964 False 894.000000 894 83.598000 770 1762 1 chr7B.!!$F1 992
9 TraesCS4B01G187800 chr7B 73334806 73335632 826 False 852.000000 852 85.377000 889 1727 1 chr7B.!!$F3 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 4987 0.041982 AACCACACCAACCCCAAGTT 59.958 50.0 0.0 0.0 40.16 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 13003 0.038744 ACCCCTGCTCACAATTGGAG 59.961 55.0 10.83 13.78 35.47 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 4.811024 TCTGAAAATAGTGACGATGATGCC 59.189 41.667 0.00 0.00 0.00 4.40
141 142 1.137872 GTTGGCATGTCTCCGAGAGAT 59.862 52.381 2.17 2.17 40.98 2.75
143 144 1.137675 TGGCATGTCTCCGAGAGATTG 59.862 52.381 5.31 3.66 40.98 2.67
159 160 5.844004 AGAGATTGTTCGACTTTGTGTACT 58.156 37.500 0.00 0.00 0.00 2.73
183 184 8.416329 ACTGTCAAGATGTATTTTTCAAGCTTT 58.584 29.630 0.00 0.00 0.00 3.51
191 196 9.860898 GATGTATTTTTCAAGCTTTCCATAGTT 57.139 29.630 0.00 0.00 0.00 2.24
239 246 5.222631 GGAAGGTTGCACTAATTTTGACAG 58.777 41.667 0.00 0.00 0.00 3.51
392 3929 1.490910 CCCCTGGAATCCTAAGTCACC 59.509 57.143 0.00 0.00 0.00 4.02
586 4987 0.041982 AACCACACCAACCCCAAGTT 59.958 50.000 0.00 0.00 40.16 2.66
696 5101 0.318120 GGTGCCAATTGGACAACAGG 59.682 55.000 29.02 0.00 37.39 4.00
701 5106 2.288395 GCCAATTGGACAACAGGTTCTG 60.288 50.000 29.02 0.00 37.39 3.02
712 5117 3.188159 ACAGGTTCTGCTTCGTTAACA 57.812 42.857 6.39 0.00 34.37 2.41
811 5219 1.954382 GAAAAACTCGACCCTGGCTTT 59.046 47.619 0.00 0.00 0.00 3.51
815 5223 0.834687 ACTCGACCCTGGCTTTGGTA 60.835 55.000 0.00 0.00 34.20 3.25
843 5262 1.918800 GCCCCCACTACTCACCAGT 60.919 63.158 0.00 0.00 36.55 4.00
845 5264 0.544357 CCCCCACTACTCACCAGTCA 60.544 60.000 0.00 0.00 33.62 3.41
847 5266 0.608640 CCCACTACTCACCAGTCACC 59.391 60.000 0.00 0.00 33.62 4.02
848 5267 1.338107 CCACTACTCACCAGTCACCA 58.662 55.000 0.00 0.00 33.62 4.17
849 5268 1.000955 CCACTACTCACCAGTCACCAC 59.999 57.143 0.00 0.00 33.62 4.16
850 5269 1.686587 CACTACTCACCAGTCACCACA 59.313 52.381 0.00 0.00 33.62 4.17
851 5270 1.687123 ACTACTCACCAGTCACCACAC 59.313 52.381 0.00 0.00 33.62 3.82
852 5271 1.000955 CTACTCACCAGTCACCACACC 59.999 57.143 0.00 0.00 33.62 4.16
977 5407 2.957680 ACTCAACACATCATTTGCACCA 59.042 40.909 0.00 0.00 0.00 4.17
1184 5619 2.092429 TCAGGCAGTTCAACTTCACCTT 60.092 45.455 1.39 0.00 0.00 3.50
1285 10544 3.515286 CAGCCATGCCCTTCAGCG 61.515 66.667 0.00 0.00 34.65 5.18
1380 10639 4.492160 GGCACCGCGATCGAGACA 62.492 66.667 21.57 0.00 38.10 3.41
1605 10870 7.228507 GGAACACACATGGTTATGATTATGCTA 59.771 37.037 0.00 0.00 37.73 3.49
1634 10900 5.580297 TGGTTTGATTTTTGTGTGCTTTCTC 59.420 36.000 0.00 0.00 0.00 2.87
1661 10935 3.275999 TCTAATAAAGCCGCTCCAAACC 58.724 45.455 0.00 0.00 0.00 3.27
1662 10936 1.917872 AATAAAGCCGCTCCAAACCA 58.082 45.000 0.00 0.00 0.00 3.67
1663 10937 2.143876 ATAAAGCCGCTCCAAACCAT 57.856 45.000 0.00 0.00 0.00 3.55
1681 10955 2.612672 CCATAAGTAGTGACGCGAGAGA 59.387 50.000 15.93 0.00 0.00 3.10
1698 10972 0.683973 AGAACTGAGCAGAGTGTGGG 59.316 55.000 4.21 0.00 0.00 4.61
1710 10984 2.972713 AGAGTGTGGGCTTGAGAAGTTA 59.027 45.455 0.00 0.00 0.00 2.24
1750 11024 8.801882 TTCAGTATTTGTAACTATCAAAGGGG 57.198 34.615 0.00 0.00 38.02 4.79
1782 11946 5.233083 TGCTTATGTATCTTCCTCATGGG 57.767 43.478 0.00 0.00 0.00 4.00
1786 11950 6.547510 GCTTATGTATCTTCCTCATGGGTTTT 59.452 38.462 0.00 0.00 36.25 2.43
1804 11968 5.046878 GGGTTTTCACGGGAATAAAAGGAAT 60.047 40.000 0.00 0.00 31.93 3.01
1806 11970 6.932400 GGTTTTCACGGGAATAAAAGGAATTT 59.068 34.615 0.00 0.00 31.93 1.82
1807 11971 7.095397 GGTTTTCACGGGAATAAAAGGAATTTG 60.095 37.037 0.00 0.00 31.93 2.32
1808 11972 5.652994 TCACGGGAATAAAAGGAATTTGG 57.347 39.130 0.00 0.00 32.27 3.28
1809 11973 5.326069 TCACGGGAATAAAAGGAATTTGGA 58.674 37.500 0.00 0.00 32.27 3.53
1810 11974 5.775701 TCACGGGAATAAAAGGAATTTGGAA 59.224 36.000 0.00 0.00 32.27 3.53
1811 11975 6.439058 TCACGGGAATAAAAGGAATTTGGAAT 59.561 34.615 0.00 0.00 32.27 3.01
1812 11976 7.038658 TCACGGGAATAAAAGGAATTTGGAATT 60.039 33.333 0.00 0.00 32.27 2.17
1813 11977 7.064490 CACGGGAATAAAAGGAATTTGGAATTG 59.936 37.037 0.00 0.00 32.27 2.32
1814 11978 6.538381 CGGGAATAAAAGGAATTTGGAATTGG 59.462 38.462 0.00 0.00 32.27 3.16
1815 11979 7.580495 CGGGAATAAAAGGAATTTGGAATTGGA 60.580 37.037 0.00 0.00 32.27 3.53
1816 11980 8.106462 GGGAATAAAAGGAATTTGGAATTGGAA 58.894 33.333 0.00 0.00 32.27 3.53
1817 11981 9.166173 GGAATAAAAGGAATTTGGAATTGGAAG 57.834 33.333 0.00 0.00 32.27 3.46
1818 11982 9.725019 GAATAAAAGGAATTTGGAATTGGAAGT 57.275 29.630 0.00 0.00 32.27 3.01
1819 11983 9.725019 AATAAAAGGAATTTGGAATTGGAAGTC 57.275 29.630 0.00 0.00 32.27 3.01
1820 11984 7.379059 AAAAGGAATTTGGAATTGGAAGTCT 57.621 32.000 0.00 0.00 0.00 3.24
1821 11985 5.990120 AGGAATTTGGAATTGGAAGTCTG 57.010 39.130 0.00 0.00 0.00 3.51
1822 11986 5.397360 AGGAATTTGGAATTGGAAGTCTGT 58.603 37.500 0.00 0.00 0.00 3.41
1823 11987 5.244626 AGGAATTTGGAATTGGAAGTCTGTG 59.755 40.000 0.00 0.00 0.00 3.66
1824 11988 5.473039 GAATTTGGAATTGGAAGTCTGTGG 58.527 41.667 0.00 0.00 0.00 4.17
1825 11989 3.874383 TTGGAATTGGAAGTCTGTGGA 57.126 42.857 0.00 0.00 0.00 4.02
1826 11990 3.140325 TGGAATTGGAAGTCTGTGGAC 57.860 47.619 0.00 0.00 42.41 4.02
1827 11991 2.224769 TGGAATTGGAAGTCTGTGGACC 60.225 50.000 0.00 0.00 43.05 4.46
1828 11992 2.076863 GAATTGGAAGTCTGTGGACCG 58.923 52.381 0.00 0.00 43.05 4.79
1829 11993 1.348064 ATTGGAAGTCTGTGGACCGA 58.652 50.000 0.00 0.00 43.05 4.69
1830 11994 0.679505 TTGGAAGTCTGTGGACCGAG 59.320 55.000 0.00 0.00 43.05 4.63
1831 11995 0.178973 TGGAAGTCTGTGGACCGAGA 60.179 55.000 0.00 0.00 43.05 4.04
1832 11996 0.966920 GGAAGTCTGTGGACCGAGAA 59.033 55.000 0.00 0.00 43.05 2.87
1833 11997 1.550976 GGAAGTCTGTGGACCGAGAAT 59.449 52.381 0.00 0.00 43.05 2.40
1834 11998 2.611518 GAAGTCTGTGGACCGAGAATG 58.388 52.381 0.00 0.00 43.05 2.67
1835 11999 1.633774 AGTCTGTGGACCGAGAATGT 58.366 50.000 0.00 0.00 43.05 2.71
1836 12000 1.546476 AGTCTGTGGACCGAGAATGTC 59.454 52.381 0.00 0.00 43.05 3.06
1866 12077 5.163992 TGCTCGACTGAACATAATTTCGTTC 60.164 40.000 11.01 11.01 41.53 3.95
1878 12089 6.797033 ACATAATTTCGTTCGCTCTTTTCAAG 59.203 34.615 0.00 0.00 0.00 3.02
1977 12616 1.826024 CGAGGATCCAGGTCCAAGG 59.174 63.158 15.82 0.00 40.90 3.61
1979 12618 0.833949 GAGGATCCAGGTCCAAGGTC 59.166 60.000 15.82 0.00 40.90 3.85
1982 12621 0.976073 GATCCAGGTCCAAGGTCGGA 60.976 60.000 0.00 0.00 0.00 4.55
1995 12634 4.094887 CCAAGGTCGGATCATTTACAAGTG 59.905 45.833 0.00 0.00 0.00 3.16
2027 12730 5.893897 AAAGAAAATCAGGAAGCTAGCTG 57.106 39.130 20.16 6.69 0.00 4.24
2060 12794 3.109619 GCACTGCAAGACGTCTAGATAC 58.890 50.000 20.39 7.34 37.43 2.24
2063 12797 4.973051 CACTGCAAGACGTCTAGATACATC 59.027 45.833 20.39 2.81 37.43 3.06
2065 12799 5.300539 ACTGCAAGACGTCTAGATACATCAT 59.699 40.000 20.39 0.00 37.43 2.45
2066 12800 5.523369 TGCAAGACGTCTAGATACATCATG 58.477 41.667 20.39 10.25 0.00 3.07
2067 12801 4.920340 GCAAGACGTCTAGATACATCATGG 59.080 45.833 20.39 0.00 0.00 3.66
2068 12802 5.278512 GCAAGACGTCTAGATACATCATGGA 60.279 44.000 20.39 0.00 0.00 3.41
2071 12805 7.348080 AGACGTCTAGATACATCATGGAAAA 57.652 36.000 18.46 0.00 0.00 2.29
2072 12806 7.782049 AGACGTCTAGATACATCATGGAAAAA 58.218 34.615 18.46 0.00 0.00 1.94
2095 12829 7.454260 AAAATTCTATGAAACCAGGTCTCAC 57.546 36.000 0.00 0.00 0.00 3.51
2096 12830 3.868757 TCTATGAAACCAGGTCTCACG 57.131 47.619 0.00 0.00 0.00 4.35
2097 12831 2.496070 TCTATGAAACCAGGTCTCACGG 59.504 50.000 0.00 0.00 0.00 4.94
2098 12832 1.348064 ATGAAACCAGGTCTCACGGA 58.652 50.000 0.00 0.00 0.00 4.69
2099 12833 1.348064 TGAAACCAGGTCTCACGGAT 58.652 50.000 0.00 0.00 0.00 4.18
2100 12834 1.697432 TGAAACCAGGTCTCACGGATT 59.303 47.619 0.00 0.00 0.00 3.01
2101 12835 2.901192 TGAAACCAGGTCTCACGGATTA 59.099 45.455 0.00 0.00 0.00 1.75
2102 12836 3.056107 TGAAACCAGGTCTCACGGATTAG 60.056 47.826 0.00 0.00 0.00 1.73
2103 12837 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
2104 12838 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
2105 12839 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
2106 12840 1.115467 AGGTCTCACGGATTAGCAGG 58.885 55.000 0.00 0.00 0.00 4.85
2107 12841 0.824759 GGTCTCACGGATTAGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
2108 12842 1.471676 GGTCTCACGGATTAGCAGGTG 60.472 57.143 0.00 0.00 0.00 4.00
2109 12843 1.476891 GTCTCACGGATTAGCAGGTGA 59.523 52.381 0.00 0.00 37.77 4.02
2111 12845 1.847328 TCACGGATTAGCAGGTGAGA 58.153 50.000 0.00 0.00 34.71 3.27
2112 12846 1.476891 TCACGGATTAGCAGGTGAGAC 59.523 52.381 0.00 0.00 34.71 3.36
2113 12847 0.824759 ACGGATTAGCAGGTGAGACC 59.175 55.000 0.00 0.00 38.99 3.85
2114 12848 0.105039 CGGATTAGCAGGTGAGACCC 59.895 60.000 0.00 0.00 39.75 4.46
2115 12849 1.204146 GGATTAGCAGGTGAGACCCA 58.796 55.000 0.00 0.00 39.75 4.51
2116 12850 1.771255 GGATTAGCAGGTGAGACCCAT 59.229 52.381 0.00 0.00 39.75 4.00
2117 12851 2.224402 GGATTAGCAGGTGAGACCCATC 60.224 54.545 0.00 0.00 39.75 3.51
2118 12852 1.204146 TTAGCAGGTGAGACCCATCC 58.796 55.000 0.00 0.00 39.75 3.51
2119 12853 0.339859 TAGCAGGTGAGACCCATCCT 59.660 55.000 0.00 0.00 39.75 3.24
2120 12854 0.339859 AGCAGGTGAGACCCATCCTA 59.660 55.000 0.00 0.00 39.75 2.94
2121 12855 1.204146 GCAGGTGAGACCCATCCTAA 58.796 55.000 0.00 0.00 39.75 2.69
2122 12856 1.771255 GCAGGTGAGACCCATCCTAAT 59.229 52.381 0.00 0.00 39.75 1.73
2123 12857 2.486191 GCAGGTGAGACCCATCCTAATG 60.486 54.545 0.00 0.00 39.75 1.90
2135 12869 2.979814 TCCTAATGGATGACACGTGG 57.020 50.000 21.57 1.66 37.46 4.94
2136 12870 1.134521 TCCTAATGGATGACACGTGGC 60.135 52.381 21.57 19.24 37.46 5.01
2137 12871 1.406751 CCTAATGGATGACACGTGGCA 60.407 52.381 29.28 29.28 37.54 4.92
2138 12872 1.665679 CTAATGGATGACACGTGGCAC 59.334 52.381 29.77 20.04 34.80 5.01
2139 12873 0.960364 AATGGATGACACGTGGCACC 60.960 55.000 29.77 27.79 34.80 5.01
2140 12874 2.746277 GGATGACACGTGGCACCC 60.746 66.667 29.77 25.95 34.80 4.61
2141 12875 2.031919 GATGACACGTGGCACCCA 59.968 61.111 29.77 12.45 34.80 4.51
2151 12885 3.214023 TGGCACCCACAAATCACAA 57.786 47.368 0.00 0.00 0.00 3.33
2152 12886 1.489481 TGGCACCCACAAATCACAAA 58.511 45.000 0.00 0.00 0.00 2.83
2153 12887 1.411977 TGGCACCCACAAATCACAAAG 59.588 47.619 0.00 0.00 0.00 2.77
2154 12888 1.501169 GCACCCACAAATCACAAAGC 58.499 50.000 0.00 0.00 0.00 3.51
2155 12889 1.202510 GCACCCACAAATCACAAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
2156 12890 2.548493 GCACCCACAAATCACAAAGCAT 60.548 45.455 0.00 0.00 0.00 3.79
2157 12891 3.319755 CACCCACAAATCACAAAGCATC 58.680 45.455 0.00 0.00 0.00 3.91
2158 12892 2.299867 ACCCACAAATCACAAAGCATCC 59.700 45.455 0.00 0.00 0.00 3.51
2159 12893 2.299582 CCCACAAATCACAAAGCATCCA 59.700 45.455 0.00 0.00 0.00 3.41
2160 12894 3.319755 CCACAAATCACAAAGCATCCAC 58.680 45.455 0.00 0.00 0.00 4.02
2161 12895 3.319755 CACAAATCACAAAGCATCCACC 58.680 45.455 0.00 0.00 0.00 4.61
2162 12896 3.006110 CACAAATCACAAAGCATCCACCT 59.994 43.478 0.00 0.00 0.00 4.00
2163 12897 3.256631 ACAAATCACAAAGCATCCACCTC 59.743 43.478 0.00 0.00 0.00 3.85
2164 12898 2.885135 ATCACAAAGCATCCACCTCA 57.115 45.000 0.00 0.00 0.00 3.86
2165 12899 1.896220 TCACAAAGCATCCACCTCAC 58.104 50.000 0.00 0.00 0.00 3.51
2166 12900 0.883833 CACAAAGCATCCACCTCACC 59.116 55.000 0.00 0.00 0.00 4.02
2167 12901 0.251341 ACAAAGCATCCACCTCACCC 60.251 55.000 0.00 0.00 0.00 4.61
2168 12902 0.967380 CAAAGCATCCACCTCACCCC 60.967 60.000 0.00 0.00 0.00 4.95
2169 12903 1.434513 AAAGCATCCACCTCACCCCA 61.435 55.000 0.00 0.00 0.00 4.96
2170 12904 2.044946 GCATCCACCTCACCCCAC 60.045 66.667 0.00 0.00 0.00 4.61
2171 12905 2.677228 CATCCACCTCACCCCACC 59.323 66.667 0.00 0.00 0.00 4.61
2172 12906 1.925455 CATCCACCTCACCCCACCT 60.925 63.158 0.00 0.00 0.00 4.00
2173 12907 1.925455 ATCCACCTCACCCCACCTG 60.925 63.158 0.00 0.00 0.00 4.00
2174 12908 2.415962 ATCCACCTCACCCCACCTGA 62.416 60.000 0.00 0.00 0.00 3.86
2175 12909 2.153401 CCACCTCACCCCACCTGAA 61.153 63.158 0.00 0.00 0.00 3.02
2176 12910 1.715019 CCACCTCACCCCACCTGAAA 61.715 60.000 0.00 0.00 0.00 2.69
2177 12911 0.405585 CACCTCACCCCACCTGAAAT 59.594 55.000 0.00 0.00 0.00 2.17
2178 12912 0.698818 ACCTCACCCCACCTGAAATC 59.301 55.000 0.00 0.00 0.00 2.17
2179 12913 0.392998 CCTCACCCCACCTGAAATCG 60.393 60.000 0.00 0.00 0.00 3.34
2180 12914 0.392998 CTCACCCCACCTGAAATCGG 60.393 60.000 0.00 0.00 0.00 4.18
2183 12917 2.275418 CCCACCTGAAATCGGGGG 59.725 66.667 12.76 8.38 46.75 5.40
2201 12935 4.445557 GGGGGAAGAGATTAGATGCTTT 57.554 45.455 0.00 0.00 0.00 3.51
2202 12936 4.140536 GGGGGAAGAGATTAGATGCTTTG 58.859 47.826 0.00 0.00 0.00 2.77
2203 12937 4.385754 GGGGGAAGAGATTAGATGCTTTGT 60.386 45.833 0.00 0.00 0.00 2.83
2204 12938 4.578105 GGGGAAGAGATTAGATGCTTTGTG 59.422 45.833 0.00 0.00 0.00 3.33
2205 12939 5.431765 GGGAAGAGATTAGATGCTTTGTGA 58.568 41.667 0.00 0.00 0.00 3.58
2206 12940 6.060788 GGGAAGAGATTAGATGCTTTGTGAT 58.939 40.000 0.00 0.00 0.00 3.06
2207 12941 6.545298 GGGAAGAGATTAGATGCTTTGTGATT 59.455 38.462 0.00 0.00 0.00 2.57
2208 12942 7.067981 GGGAAGAGATTAGATGCTTTGTGATTT 59.932 37.037 0.00 0.00 0.00 2.17
2209 12943 9.113838 GGAAGAGATTAGATGCTTTGTGATTTA 57.886 33.333 0.00 0.00 0.00 1.40
2210 12944 9.928236 GAAGAGATTAGATGCTTTGTGATTTAC 57.072 33.333 0.00 0.00 0.00 2.01
2211 12945 9.453572 AAGAGATTAGATGCTTTGTGATTTACA 57.546 29.630 0.00 0.00 37.56 2.41
2212 12946 9.624373 AGAGATTAGATGCTTTGTGATTTACAT 57.376 29.630 0.00 0.00 39.48 2.29
2244 12982 9.530633 ACATGTCGTAAACTATCTTAAATCCTC 57.469 33.333 0.00 0.00 0.00 3.71
2262 13000 7.513371 AATCCTCTTCTATTCGAGTCGTAAT 57.487 36.000 13.12 12.79 0.00 1.89
2265 13003 7.416022 TCCTCTTCTATTCGAGTCGTAATTTC 58.584 38.462 13.12 0.00 0.00 2.17
2280 13018 5.122239 TCGTAATTTCTCCAATTGTGAGCAG 59.878 40.000 15.30 0.89 35.71 4.24
2408 15222 1.760613 ACGTACAACCGATCCATCCAT 59.239 47.619 0.00 0.00 0.00 3.41
2435 15249 8.649591 CCATCCATCCATAAAATTAACAATCCA 58.350 33.333 0.00 0.00 0.00 3.41
2451 15281 2.104331 CATCTTCGTCGACCCCGG 59.896 66.667 10.58 0.00 36.24 5.73
2453 15283 2.413142 ATCTTCGTCGACCCCGGAC 61.413 63.158 10.58 0.00 36.24 4.79
2466 15296 1.872679 CCGGACGAACGCTAGCTTC 60.873 63.158 13.93 13.78 0.00 3.86
2478 15308 1.470632 GCTAGCTTCGCTCAGTGTCAT 60.471 52.381 7.70 0.00 40.44 3.06
2481 15311 0.997932 GCTTCGCTCAGTGTCATCAG 59.002 55.000 0.00 0.00 0.00 2.90
2482 15312 1.671261 GCTTCGCTCAGTGTCATCAGT 60.671 52.381 0.00 0.00 0.00 3.41
2484 15314 0.961753 TCGCTCAGTGTCATCAGTGT 59.038 50.000 3.53 0.00 43.31 3.55
2485 15315 1.066136 CGCTCAGTGTCATCAGTGTG 58.934 55.000 3.53 2.81 43.31 3.82
2486 15316 1.436600 GCTCAGTGTCATCAGTGTGG 58.563 55.000 3.53 0.81 43.31 4.17
2487 15317 1.436600 CTCAGTGTCATCAGTGTGGC 58.563 55.000 3.53 0.00 43.31 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 2.196749 ACAATGCTGCGATTCTACTCG 58.803 47.619 0.00 0.00 41.54 4.18
141 142 4.496360 TGACAGTACACAAAGTCGAACAA 58.504 39.130 0.00 0.00 33.83 2.83
143 144 4.802039 TCTTGACAGTACACAAAGTCGAAC 59.198 41.667 0.00 0.00 33.83 3.95
159 160 7.867403 GGAAAGCTTGAAAAATACATCTTGACA 59.133 33.333 0.00 0.00 0.00 3.58
183 184 5.049267 GCGGTTTTACAAACTCAACTATGGA 60.049 40.000 0.00 0.00 0.00 3.41
191 196 1.015109 TGCGCGGTTTTACAAACTCA 58.985 45.000 8.83 0.00 0.00 3.41
239 246 4.068599 GCCTTTCAGATATTACCTCCTGC 58.931 47.826 0.00 0.00 0.00 4.85
392 3929 5.290643 ACTCTCTTACTTGTACTAGTACGCG 59.709 44.000 24.36 19.72 38.85 6.01
729 5136 2.032681 GGGTCTGAAAGCACGCCT 59.967 61.111 0.00 0.00 0.00 5.52
783 5191 4.037446 CAGGGTCGAGTTTTTCCAAATTGA 59.963 41.667 0.00 0.00 0.00 2.57
815 5223 0.770557 TAGTGGGGGCTGGTGAAAGT 60.771 55.000 0.00 0.00 0.00 2.66
843 5262 1.147376 CTTGAACGGGGTGTGGTGA 59.853 57.895 0.00 0.00 0.00 4.02
845 5264 2.203294 GCTTGAACGGGGTGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
847 5266 0.817634 TGAAGCTTGAACGGGGTGTG 60.818 55.000 2.10 0.00 0.00 3.82
848 5267 0.818040 GTGAAGCTTGAACGGGGTGT 60.818 55.000 2.10 0.00 0.00 4.16
849 5268 1.515521 GGTGAAGCTTGAACGGGGTG 61.516 60.000 2.10 0.00 0.00 4.61
850 5269 1.228154 GGTGAAGCTTGAACGGGGT 60.228 57.895 2.10 0.00 0.00 4.95
851 5270 0.821711 TTGGTGAAGCTTGAACGGGG 60.822 55.000 2.10 0.00 0.00 5.73
852 5271 1.028905 TTTGGTGAAGCTTGAACGGG 58.971 50.000 2.10 0.00 0.00 5.28
944 5363 1.742831 GTGTTGAGTTGTGGCTGTTGA 59.257 47.619 0.00 0.00 0.00 3.18
977 5407 2.417924 GCTGTGATGATCAAGGACGACT 60.418 50.000 0.00 0.00 0.00 4.18
1184 5619 2.869646 CGTGACGCGTGGTACCTA 59.130 61.111 20.70 0.00 35.54 3.08
1285 10544 1.066908 CTCGAGCCTCTCCTTCATGAC 59.933 57.143 0.00 0.00 0.00 3.06
1380 10639 1.376424 CTTGATGTGCGAGGTGGCT 60.376 57.895 0.00 0.00 0.00 4.75
1605 10870 4.743348 GCACACAAAAATCAAACCAGGGAT 60.743 41.667 0.00 0.00 0.00 3.85
1634 10900 1.002087 AGCGGCTTTATTAGATCGGGG 59.998 52.381 0.00 0.00 0.00 5.73
1661 10935 3.946308 TCTCTCGCGTCACTACTTATG 57.054 47.619 5.77 0.00 0.00 1.90
1662 10936 3.940221 AGTTCTCTCGCGTCACTACTTAT 59.060 43.478 5.77 0.00 0.00 1.73
1663 10937 3.124806 CAGTTCTCTCGCGTCACTACTTA 59.875 47.826 5.77 0.00 0.00 2.24
1681 10955 1.072159 GCCCACACTCTGCTCAGTT 59.928 57.895 0.00 0.00 0.00 3.16
1750 11024 3.629398 AGATACATAAGCAAGCAACAGCC 59.371 43.478 0.00 0.00 0.00 4.85
1782 11946 7.095397 CCAAATTCCTTTTATTCCCGTGAAAAC 60.095 37.037 0.00 0.00 33.32 2.43
1786 11950 5.326069 TCCAAATTCCTTTTATTCCCGTGA 58.674 37.500 0.00 0.00 0.00 4.35
1804 11968 3.888930 GTCCACAGACTTCCAATTCCAAA 59.111 43.478 0.00 0.00 40.10 3.28
1806 11970 2.224769 GGTCCACAGACTTCCAATTCCA 60.225 50.000 0.00 0.00 43.05 3.53
1807 11971 2.437413 GGTCCACAGACTTCCAATTCC 58.563 52.381 0.00 0.00 43.05 3.01
1808 11972 2.076863 CGGTCCACAGACTTCCAATTC 58.923 52.381 0.00 0.00 43.05 2.17
1809 11973 1.697432 TCGGTCCACAGACTTCCAATT 59.303 47.619 0.00 0.00 43.05 2.32
1810 11974 1.276421 CTCGGTCCACAGACTTCCAAT 59.724 52.381 0.00 0.00 43.05 3.16
1811 11975 0.679505 CTCGGTCCACAGACTTCCAA 59.320 55.000 0.00 0.00 43.05 3.53
1812 11976 0.178973 TCTCGGTCCACAGACTTCCA 60.179 55.000 0.00 0.00 43.05 3.53
1813 11977 0.966920 TTCTCGGTCCACAGACTTCC 59.033 55.000 0.00 0.00 43.05 3.46
1814 11978 2.028930 ACATTCTCGGTCCACAGACTTC 60.029 50.000 0.00 0.00 43.05 3.01
1815 11979 1.971357 ACATTCTCGGTCCACAGACTT 59.029 47.619 0.00 0.00 43.05 3.01
1816 11980 1.546476 GACATTCTCGGTCCACAGACT 59.454 52.381 0.00 0.00 43.05 3.24
1817 11981 1.546476 AGACATTCTCGGTCCACAGAC 59.454 52.381 0.00 0.00 42.73 3.51
1818 11982 1.924731 AGACATTCTCGGTCCACAGA 58.075 50.000 0.00 0.00 35.89 3.41
1819 11983 2.289072 ACAAGACATTCTCGGTCCACAG 60.289 50.000 0.00 0.00 35.89 3.66
1820 11984 1.691976 ACAAGACATTCTCGGTCCACA 59.308 47.619 0.00 0.00 35.89 4.17
1821 11985 2.457366 ACAAGACATTCTCGGTCCAC 57.543 50.000 0.00 0.00 35.89 4.02
1822 11986 3.138304 CAAACAAGACATTCTCGGTCCA 58.862 45.455 0.00 0.00 35.89 4.02
1823 11987 2.095718 GCAAACAAGACATTCTCGGTCC 60.096 50.000 0.00 0.00 35.89 4.46
1824 11988 2.808543 AGCAAACAAGACATTCTCGGTC 59.191 45.455 0.00 0.00 35.50 4.79
1825 11989 2.808543 GAGCAAACAAGACATTCTCGGT 59.191 45.455 0.00 0.00 0.00 4.69
1826 11990 2.159787 CGAGCAAACAAGACATTCTCGG 60.160 50.000 0.00 0.00 38.48 4.63
1827 11991 2.731451 TCGAGCAAACAAGACATTCTCG 59.269 45.455 0.00 0.00 42.04 4.04
1828 11992 3.743396 AGTCGAGCAAACAAGACATTCTC 59.257 43.478 0.00 0.00 36.18 2.87
1829 11993 3.496130 CAGTCGAGCAAACAAGACATTCT 59.504 43.478 0.00 0.00 36.18 2.40
1830 11994 3.494626 TCAGTCGAGCAAACAAGACATTC 59.505 43.478 0.00 0.00 36.18 2.67
1831 11995 3.466836 TCAGTCGAGCAAACAAGACATT 58.533 40.909 0.00 0.00 36.18 2.71
1832 11996 3.111853 TCAGTCGAGCAAACAAGACAT 57.888 42.857 0.00 0.00 36.18 3.06
1833 11997 2.595124 TCAGTCGAGCAAACAAGACA 57.405 45.000 0.00 0.00 36.18 3.41
1834 11998 2.607635 TGTTCAGTCGAGCAAACAAGAC 59.392 45.455 4.45 0.00 28.24 3.01
1835 11999 2.899976 TGTTCAGTCGAGCAAACAAGA 58.100 42.857 4.45 0.00 28.24 3.02
1836 12000 3.885484 ATGTTCAGTCGAGCAAACAAG 57.115 42.857 9.62 0.00 35.84 3.16
1878 12089 1.792949 CAACACACTGTCGCTTCCTAC 59.207 52.381 0.00 0.00 0.00 3.18
1977 12616 3.374058 CACCCACTTGTAAATGATCCGAC 59.626 47.826 0.00 0.00 0.00 4.79
1979 12618 3.343617 ACACCCACTTGTAAATGATCCG 58.656 45.455 0.00 0.00 0.00 4.18
1982 12621 4.647611 TCGAACACCCACTTGTAAATGAT 58.352 39.130 0.00 0.00 0.00 2.45
1995 12634 4.277423 TCCTGATTTTCTTTTCGAACACCC 59.723 41.667 0.00 0.00 0.00 4.61
2027 12730 5.573146 GTCTTGCAGTGCTAAATTGTATCC 58.427 41.667 17.60 0.00 0.00 2.59
2071 12805 6.149474 CGTGAGACCTGGTTTCATAGAATTTT 59.851 38.462 21.29 0.00 29.77 1.82
2072 12806 5.643777 CGTGAGACCTGGTTTCATAGAATTT 59.356 40.000 21.29 0.00 29.77 1.82
2075 12809 3.056107 CCGTGAGACCTGGTTTCATAGAA 60.056 47.826 21.29 0.00 29.77 2.10
2076 12810 2.496070 CCGTGAGACCTGGTTTCATAGA 59.504 50.000 21.29 0.00 29.77 1.98
2077 12811 2.496070 TCCGTGAGACCTGGTTTCATAG 59.504 50.000 21.29 17.42 29.77 2.23
2078 12812 2.531771 TCCGTGAGACCTGGTTTCATA 58.468 47.619 21.29 9.08 29.77 2.15
2079 12813 1.348064 TCCGTGAGACCTGGTTTCAT 58.652 50.000 21.29 0.00 29.77 2.57
2080 12814 1.348064 ATCCGTGAGACCTGGTTTCA 58.652 50.000 15.44 15.44 0.00 2.69
2081 12815 2.474410 AATCCGTGAGACCTGGTTTC 57.526 50.000 10.29 10.29 0.00 2.78
2082 12816 2.354805 GCTAATCCGTGAGACCTGGTTT 60.355 50.000 0.00 0.00 0.00 3.27
2083 12817 1.207329 GCTAATCCGTGAGACCTGGTT 59.793 52.381 0.00 0.00 0.00 3.67
2084 12818 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
2085 12819 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
2086 12820 1.202463 CCTGCTAATCCGTGAGACCTG 60.202 57.143 0.00 0.00 0.00 4.00
2087 12821 1.115467 CCTGCTAATCCGTGAGACCT 58.885 55.000 0.00 0.00 0.00 3.85
2088 12822 0.824759 ACCTGCTAATCCGTGAGACC 59.175 55.000 0.00 0.00 0.00 3.85
2089 12823 1.476891 TCACCTGCTAATCCGTGAGAC 59.523 52.381 0.00 0.00 31.80 3.36
2090 12824 1.847328 TCACCTGCTAATCCGTGAGA 58.153 50.000 0.00 0.00 31.80 3.27
2091 12825 2.215907 CTCACCTGCTAATCCGTGAG 57.784 55.000 2.01 2.01 44.38 3.51
2092 12826 1.476891 GTCTCACCTGCTAATCCGTGA 59.523 52.381 0.00 0.00 34.26 4.35
2093 12827 1.471676 GGTCTCACCTGCTAATCCGTG 60.472 57.143 0.00 0.00 34.73 4.94
2094 12828 0.824759 GGTCTCACCTGCTAATCCGT 59.175 55.000 0.00 0.00 34.73 4.69
2095 12829 0.105039 GGGTCTCACCTGCTAATCCG 59.895 60.000 0.00 0.00 38.64 4.18
2096 12830 1.204146 TGGGTCTCACCTGCTAATCC 58.796 55.000 0.00 0.00 38.64 3.01
2097 12831 2.224402 GGATGGGTCTCACCTGCTAATC 60.224 54.545 0.00 0.00 38.64 1.75
2098 12832 1.771255 GGATGGGTCTCACCTGCTAAT 59.229 52.381 0.00 0.00 38.64 1.73
2099 12833 1.204146 GGATGGGTCTCACCTGCTAA 58.796 55.000 0.00 0.00 38.64 3.09
2100 12834 0.339859 AGGATGGGTCTCACCTGCTA 59.660 55.000 0.00 0.00 38.64 3.49
2101 12835 0.339859 TAGGATGGGTCTCACCTGCT 59.660 55.000 0.00 0.00 38.64 4.24
2102 12836 1.204146 TTAGGATGGGTCTCACCTGC 58.796 55.000 0.00 0.00 38.64 4.85
2103 12837 3.482156 CATTAGGATGGGTCTCACCTG 57.518 52.381 0.00 0.00 38.64 4.00
2117 12851 1.299541 GCCACGTGTCATCCATTAGG 58.700 55.000 15.65 0.00 0.00 2.69
2118 12852 1.665679 GTGCCACGTGTCATCCATTAG 59.334 52.381 15.65 0.00 0.00 1.73
2119 12853 1.677518 GGTGCCACGTGTCATCCATTA 60.678 52.381 15.65 0.00 0.00 1.90
2120 12854 0.960364 GGTGCCACGTGTCATCCATT 60.960 55.000 15.65 0.00 0.00 3.16
2121 12855 1.377202 GGTGCCACGTGTCATCCAT 60.377 57.895 15.65 0.00 0.00 3.41
2122 12856 2.031919 GGTGCCACGTGTCATCCA 59.968 61.111 15.65 0.55 0.00 3.41
2123 12857 2.746277 GGGTGCCACGTGTCATCC 60.746 66.667 13.90 13.90 0.00 3.51
2124 12858 2.031919 TGGGTGCCACGTGTCATC 59.968 61.111 15.65 8.29 0.00 2.92
2125 12859 2.281484 GTGGGTGCCACGTGTCAT 60.281 61.111 15.65 0.00 44.95 3.06
2133 12867 1.411977 CTTTGTGATTTGTGGGTGCCA 59.588 47.619 0.00 0.00 0.00 4.92
2134 12868 1.873486 GCTTTGTGATTTGTGGGTGCC 60.873 52.381 0.00 0.00 0.00 5.01
2135 12869 1.202510 TGCTTTGTGATTTGTGGGTGC 60.203 47.619 0.00 0.00 0.00 5.01
2136 12870 2.886862 TGCTTTGTGATTTGTGGGTG 57.113 45.000 0.00 0.00 0.00 4.61
2137 12871 2.299867 GGATGCTTTGTGATTTGTGGGT 59.700 45.455 0.00 0.00 0.00 4.51
2138 12872 2.299582 TGGATGCTTTGTGATTTGTGGG 59.700 45.455 0.00 0.00 0.00 4.61
2139 12873 3.319755 GTGGATGCTTTGTGATTTGTGG 58.680 45.455 0.00 0.00 0.00 4.17
2140 12874 3.006110 AGGTGGATGCTTTGTGATTTGTG 59.994 43.478 0.00 0.00 0.00 3.33
2141 12875 3.233507 AGGTGGATGCTTTGTGATTTGT 58.766 40.909 0.00 0.00 0.00 2.83
2142 12876 3.256383 TGAGGTGGATGCTTTGTGATTTG 59.744 43.478 0.00 0.00 0.00 2.32
2143 12877 3.256631 GTGAGGTGGATGCTTTGTGATTT 59.743 43.478 0.00 0.00 0.00 2.17
2144 12878 2.821969 GTGAGGTGGATGCTTTGTGATT 59.178 45.455 0.00 0.00 0.00 2.57
2145 12879 2.440409 GTGAGGTGGATGCTTTGTGAT 58.560 47.619 0.00 0.00 0.00 3.06
2146 12880 1.545428 GGTGAGGTGGATGCTTTGTGA 60.545 52.381 0.00 0.00 0.00 3.58
2147 12881 0.883833 GGTGAGGTGGATGCTTTGTG 59.116 55.000 0.00 0.00 0.00 3.33
2148 12882 0.251341 GGGTGAGGTGGATGCTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
2149 12883 0.967380 GGGGTGAGGTGGATGCTTTG 60.967 60.000 0.00 0.00 0.00 2.77
2150 12884 1.384191 GGGGTGAGGTGGATGCTTT 59.616 57.895 0.00 0.00 0.00 3.51
2151 12885 1.852157 TGGGGTGAGGTGGATGCTT 60.852 57.895 0.00 0.00 0.00 3.91
2152 12886 2.204136 TGGGGTGAGGTGGATGCT 60.204 61.111 0.00 0.00 0.00 3.79
2153 12887 2.044946 GTGGGGTGAGGTGGATGC 60.045 66.667 0.00 0.00 0.00 3.91
2154 12888 1.925455 AGGTGGGGTGAGGTGGATG 60.925 63.158 0.00 0.00 0.00 3.51
2155 12889 1.925455 CAGGTGGGGTGAGGTGGAT 60.925 63.158 0.00 0.00 0.00 3.41
2156 12890 2.529136 CAGGTGGGGTGAGGTGGA 60.529 66.667 0.00 0.00 0.00 4.02
2157 12891 1.715019 TTTCAGGTGGGGTGAGGTGG 61.715 60.000 0.00 0.00 0.00 4.61
2158 12892 0.405585 ATTTCAGGTGGGGTGAGGTG 59.594 55.000 0.00 0.00 0.00 4.00
2159 12893 0.698818 GATTTCAGGTGGGGTGAGGT 59.301 55.000 0.00 0.00 0.00 3.85
2160 12894 0.392998 CGATTTCAGGTGGGGTGAGG 60.393 60.000 0.00 0.00 0.00 3.86
2161 12895 0.392998 CCGATTTCAGGTGGGGTGAG 60.393 60.000 0.00 0.00 0.00 3.51
2162 12896 1.682849 CCGATTTCAGGTGGGGTGA 59.317 57.895 0.00 0.00 0.00 4.02
2163 12897 1.378514 CCCGATTTCAGGTGGGGTG 60.379 63.158 0.00 0.00 38.03 4.61
2164 12898 3.087065 CCCGATTTCAGGTGGGGT 58.913 61.111 0.00 0.00 38.03 4.95
2166 12900 2.275418 CCCCCGATTTCAGGTGGG 59.725 66.667 0.00 0.00 41.56 4.61
2180 12914 4.140536 CAAAGCATCTAATCTCTTCCCCC 58.859 47.826 0.00 0.00 0.00 5.40
2181 12915 4.578105 CACAAAGCATCTAATCTCTTCCCC 59.422 45.833 0.00 0.00 0.00 4.81
2182 12916 5.431765 TCACAAAGCATCTAATCTCTTCCC 58.568 41.667 0.00 0.00 0.00 3.97
2183 12917 7.565323 AATCACAAAGCATCTAATCTCTTCC 57.435 36.000 0.00 0.00 0.00 3.46
2184 12918 9.928236 GTAAATCACAAAGCATCTAATCTCTTC 57.072 33.333 0.00 0.00 0.00 2.87
2185 12919 9.453572 TGTAAATCACAAAGCATCTAATCTCTT 57.546 29.630 0.00 0.00 32.95 2.85
2186 12920 9.624373 ATGTAAATCACAAAGCATCTAATCTCT 57.376 29.630 0.00 0.00 41.55 3.10
2187 12921 9.661187 CATGTAAATCACAAAGCATCTAATCTC 57.339 33.333 0.00 0.00 41.55 2.75
2188 12922 9.399797 TCATGTAAATCACAAAGCATCTAATCT 57.600 29.630 0.00 0.00 41.55 2.40
2191 12925 9.176460 TGATCATGTAAATCACAAAGCATCTAA 57.824 29.630 0.00 0.00 41.55 2.10
2192 12926 8.735692 TGATCATGTAAATCACAAAGCATCTA 57.264 30.769 0.00 0.00 41.55 1.98
2193 12927 7.634671 TGATCATGTAAATCACAAAGCATCT 57.365 32.000 0.00 0.00 41.55 2.90
2194 12928 7.756272 TGTTGATCATGTAAATCACAAAGCATC 59.244 33.333 0.00 0.00 41.55 3.91
2195 12929 7.604549 TGTTGATCATGTAAATCACAAAGCAT 58.395 30.769 0.00 0.00 41.55 3.79
2196 12930 6.979465 TGTTGATCATGTAAATCACAAAGCA 58.021 32.000 0.00 0.00 41.55 3.91
2197 12931 7.891782 CATGTTGATCATGTAAATCACAAAGC 58.108 34.615 0.00 0.00 46.18 3.51
2211 12945 8.948631 AAGATAGTTTACGACATGTTGATCAT 57.051 30.769 20.26 1.56 37.22 2.45
2212 12946 9.863845 TTAAGATAGTTTACGACATGTTGATCA 57.136 29.630 20.26 0.00 0.00 2.92
2232 12970 8.293867 CGACTCGAATAGAAGAGGATTTAAGAT 58.706 37.037 0.00 0.00 38.72 2.40
2244 12982 7.194278 TGGAGAAATTACGACTCGAATAGAAG 58.806 38.462 5.20 0.00 0.00 2.85
2252 12990 5.347635 TCACAATTGGAGAAATTACGACTCG 59.652 40.000 10.83 0.00 36.28 4.18
2262 13000 2.517959 CCCTGCTCACAATTGGAGAAA 58.482 47.619 21.24 11.30 34.24 2.52
2265 13003 0.038744 ACCCCTGCTCACAATTGGAG 59.961 55.000 10.83 13.78 35.47 3.86
2280 13018 1.376037 CTGCTCTTTCGGACACCCC 60.376 63.158 0.00 0.00 0.00 4.95
2408 15222 8.869109 GGATTGTTAATTTTATGGATGGATGGA 58.131 33.333 0.00 0.00 0.00 3.41
2435 15249 2.044650 TCCGGGGTCGACGAAGAT 60.045 61.111 9.92 0.00 39.00 2.40
2437 15251 4.471726 CGTCCGGGGTCGACGAAG 62.472 72.222 9.92 2.63 39.97 3.79
2441 15271 4.766088 CGTTCGTCCGGGGTCGAC 62.766 72.222 7.13 7.13 39.00 4.20
2466 15296 1.066136 CACACTGATGACACTGAGCG 58.934 55.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.