Multiple sequence alignment - TraesCS4B01G187600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G187600 chr4B 100.000 2993 0 0 1 2993 408602970 408605962 0.000000e+00 5528.0
1 TraesCS4B01G187600 chr4A 92.533 2424 90 35 628 2985 141330005 141327607 0.000000e+00 3389.0
2 TraesCS4B01G187600 chr4A 76.353 499 82 17 564 1038 141331875 141331389 4.990000e-58 235.0
3 TraesCS4B01G187600 chr4A 90.426 94 9 0 505 598 141330098 141330005 1.130000e-24 124.0
4 TraesCS4B01G187600 chr4D 93.241 2086 77 20 934 2971 328806217 328808286 0.000000e+00 3013.0
5 TraesCS4B01G187600 chr4D 92.506 387 19 2 508 894 328805589 328805965 2.030000e-151 545.0
6 TraesCS4B01G187600 chr6B 91.818 440 35 1 1 439 572080013 572080452 1.970000e-171 612.0
7 TraesCS4B01G187600 chr3D 83.704 135 20 2 1 133 51443670 51443536 3.130000e-25 126.0
8 TraesCS4B01G187600 chr2B 82.609 138 16 6 1 133 111070159 111070293 6.780000e-22 115.0
9 TraesCS4B01G187600 chr2B 79.710 138 20 5 1 133 110406503 110406369 3.180000e-15 93.5
10 TraesCS4B01G187600 chr2D 81.955 133 22 2 3 133 73268786 73268654 8.770000e-21 111.0
11 TraesCS4B01G187600 chr2D 79.137 139 19 8 1 133 72999035 72998901 1.480000e-13 87.9
12 TraesCS4B01G187600 chr2D 97.826 46 0 1 1 45 73312371 73312326 8.900000e-11 78.7
13 TraesCS4B01G187600 chr2A 81.884 138 17 5 1 133 72754893 72755027 3.150000e-20 110.0
14 TraesCS4B01G187600 chr2A 79.710 138 20 6 1 133 72751663 72751797 3.180000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G187600 chr4B 408602970 408605962 2992 False 5528.000000 5528 100.000000 1 2993 1 chr4B.!!$F1 2992
1 TraesCS4B01G187600 chr4A 141327607 141331875 4268 True 1249.333333 3389 86.437333 505 2985 3 chr4A.!!$R1 2480
2 TraesCS4B01G187600 chr4D 328805589 328808286 2697 False 1779.000000 3013 92.873500 508 2971 2 chr4D.!!$F1 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.030235 CGTGATGCCAATGCCATCAG 59.970 55.0 7.17 0.0 36.43 2.90 F
307 308 0.036875 GTGTGAAGGGAGGGACTTGG 59.963 60.0 0.00 0.0 41.55 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 3182 1.203001 AGAAATCCTGGCCGTCCAAAA 60.203 47.619 0.0 0.0 42.91 2.44 R
2114 3671 1.422402 AGTTGTAACCACCCCGACAAT 59.578 47.619 0.0 0.0 34.54 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.697756 CCTTGGCGCCGTTCCTGA 62.698 66.667 23.90 0.00 0.00 3.86
35 36 3.423154 CTTGGCGCCGTTCCTGAC 61.423 66.667 23.90 0.00 0.00 3.51
44 45 3.857909 GTTCCTGACGAACTCCGC 58.142 61.111 0.00 0.00 46.33 5.54
45 46 1.737008 GTTCCTGACGAACTCCGCC 60.737 63.158 0.00 0.00 46.33 6.13
46 47 2.204461 TTCCTGACGAACTCCGCCA 61.204 57.895 0.00 0.00 43.32 5.69
47 48 1.541310 TTCCTGACGAACTCCGCCAT 61.541 55.000 0.00 0.00 43.32 4.40
52 53 3.864686 CGAACTCCGCCATTGCCG 61.865 66.667 0.00 0.00 0.00 5.69
53 54 2.746277 GAACTCCGCCATTGCCGT 60.746 61.111 0.00 0.00 0.00 5.68
55 56 3.545124 AACTCCGCCATTGCCGTGA 62.545 57.895 0.00 0.00 0.00 4.35
56 57 2.514592 CTCCGCCATTGCCGTGAT 60.515 61.111 0.00 0.00 0.00 3.06
57 58 2.823593 TCCGCCATTGCCGTGATG 60.824 61.111 0.00 0.00 0.00 3.07
58 59 4.557605 CCGCCATTGCCGTGATGC 62.558 66.667 0.00 0.00 0.00 3.91
59 60 4.557605 CGCCATTGCCGTGATGCC 62.558 66.667 0.00 0.00 0.00 4.40
60 61 3.451004 GCCATTGCCGTGATGCCA 61.451 61.111 0.00 0.00 0.00 4.92
61 62 3.004326 GCCATTGCCGTGATGCCAA 62.004 57.895 0.00 0.00 0.00 4.52
62 63 1.817881 CCATTGCCGTGATGCCAAT 59.182 52.632 0.00 0.00 0.00 3.16
63 64 0.528901 CCATTGCCGTGATGCCAATG 60.529 55.000 1.64 1.64 33.46 2.82
64 65 1.142314 ATTGCCGTGATGCCAATGC 59.858 52.632 0.00 0.00 38.26 3.56
65 66 2.300850 ATTGCCGTGATGCCAATGCC 62.301 55.000 0.00 0.00 36.33 4.40
66 67 3.451004 GCCGTGATGCCAATGCCA 61.451 61.111 0.00 0.00 36.33 4.92
67 68 2.788640 GCCGTGATGCCAATGCCAT 61.789 57.895 0.00 0.00 36.33 4.40
68 69 1.361271 CCGTGATGCCAATGCCATC 59.639 57.895 0.00 0.00 36.33 3.51
70 71 0.030235 CGTGATGCCAATGCCATCAG 59.970 55.000 7.17 0.00 36.43 2.90
71 72 0.249322 GTGATGCCAATGCCATCAGC 60.249 55.000 7.17 0.00 44.14 4.26
82 83 1.146930 CCATCAGCGGTGCCAGTAT 59.853 57.895 10.38 0.00 0.00 2.12
84 85 0.940126 CATCAGCGGTGCCAGTATTC 59.060 55.000 10.38 0.00 0.00 1.75
85 86 0.541392 ATCAGCGGTGCCAGTATTCA 59.459 50.000 10.38 0.00 0.00 2.57
86 87 0.541392 TCAGCGGTGCCAGTATTCAT 59.459 50.000 10.38 0.00 0.00 2.57
97 98 2.301346 CAGTATTCATGGCACCTTCCC 58.699 52.381 0.00 0.00 0.00 3.97
99 100 2.092212 AGTATTCATGGCACCTTCCCAG 60.092 50.000 0.00 0.00 35.48 4.45
100 101 0.685458 ATTCATGGCACCTTCCCAGC 60.685 55.000 0.00 0.00 35.48 4.85
105 106 2.991540 GCACCTTCCCAGCCAACC 60.992 66.667 0.00 0.00 0.00 3.77
106 107 2.846532 CACCTTCCCAGCCAACCT 59.153 61.111 0.00 0.00 0.00 3.50
107 108 1.303643 CACCTTCCCAGCCAACCTC 60.304 63.158 0.00 0.00 0.00 3.85
108 109 1.464198 ACCTTCCCAGCCAACCTCT 60.464 57.895 0.00 0.00 0.00 3.69
119 120 1.447489 CAACCTCTGGCAGCTCGAG 60.447 63.158 10.34 8.45 0.00 4.04
121 122 1.882989 AACCTCTGGCAGCTCGAGAC 61.883 60.000 18.75 7.74 0.00 3.36
122 123 2.493973 CTCTGGCAGCTCGAGACC 59.506 66.667 18.75 14.38 0.00 3.85
123 124 3.408501 CTCTGGCAGCTCGAGACCG 62.409 68.421 18.75 10.17 37.07 4.79
124 125 3.753434 CTGGCAGCTCGAGACCGT 61.753 66.667 18.75 0.00 37.05 4.83
125 126 3.978723 CTGGCAGCTCGAGACCGTG 62.979 68.421 18.75 8.33 37.05 4.94
126 127 4.803426 GGCAGCTCGAGACCGTGG 62.803 72.222 18.75 0.00 37.05 4.94
128 129 2.487428 CAGCTCGAGACCGTGGAG 59.513 66.667 18.75 0.00 37.05 3.86
129 130 2.034376 AGCTCGAGACCGTGGAGT 59.966 61.111 18.75 0.00 33.60 3.85
130 131 1.025113 CAGCTCGAGACCGTGGAGTA 61.025 60.000 18.75 0.00 33.60 2.59
131 132 0.745128 AGCTCGAGACCGTGGAGTAG 60.745 60.000 18.75 0.00 33.60 2.57
132 133 1.722677 CTCGAGACCGTGGAGTAGC 59.277 63.158 6.58 0.00 37.05 3.58
133 134 1.002990 TCGAGACCGTGGAGTAGCA 60.003 57.895 0.00 0.00 37.05 3.49
134 135 0.393944 TCGAGACCGTGGAGTAGCAT 60.394 55.000 0.00 0.00 37.05 3.79
135 136 0.248661 CGAGACCGTGGAGTAGCATG 60.249 60.000 0.00 0.00 0.00 4.06
136 137 0.818296 GAGACCGTGGAGTAGCATGT 59.182 55.000 0.00 0.00 0.00 3.21
137 138 2.022195 GAGACCGTGGAGTAGCATGTA 58.978 52.381 0.00 0.00 0.00 2.29
139 140 2.022195 GACCGTGGAGTAGCATGTAGA 58.978 52.381 0.00 0.00 0.00 2.59
140 141 2.025155 ACCGTGGAGTAGCATGTAGAG 58.975 52.381 0.00 0.00 0.00 2.43
141 142 1.269309 CCGTGGAGTAGCATGTAGAGC 60.269 57.143 0.00 0.00 0.00 4.09
142 143 1.678627 CGTGGAGTAGCATGTAGAGCT 59.321 52.381 0.00 0.00 45.77 4.09
144 145 3.058570 CGTGGAGTAGCATGTAGAGCTAG 60.059 52.174 0.00 0.00 44.54 3.42
146 147 3.885901 TGGAGTAGCATGTAGAGCTAGTG 59.114 47.826 7.22 0.00 45.57 2.74
147 148 4.138290 GGAGTAGCATGTAGAGCTAGTGA 58.862 47.826 7.22 0.00 45.57 3.41
148 149 4.023536 GGAGTAGCATGTAGAGCTAGTGAC 60.024 50.000 7.22 0.00 45.57 3.67
149 150 4.787551 AGTAGCATGTAGAGCTAGTGACT 58.212 43.478 2.04 0.00 44.32 3.41
150 151 4.578516 AGTAGCATGTAGAGCTAGTGACTG 59.421 45.833 0.00 0.00 44.32 3.51
152 153 3.380004 AGCATGTAGAGCTAGTGACTGAC 59.620 47.826 0.00 0.00 41.32 3.51
153 154 3.490078 GCATGTAGAGCTAGTGACTGACC 60.490 52.174 0.00 0.00 0.00 4.02
154 155 2.724454 TGTAGAGCTAGTGACTGACCC 58.276 52.381 0.00 0.00 0.00 4.46
155 156 2.041216 TGTAGAGCTAGTGACTGACCCA 59.959 50.000 0.00 0.00 0.00 4.51
156 157 2.541233 AGAGCTAGTGACTGACCCAT 57.459 50.000 0.00 0.00 0.00 4.00
157 158 2.826488 AGAGCTAGTGACTGACCCATT 58.174 47.619 0.00 0.00 0.00 3.16
158 159 3.982516 AGAGCTAGTGACTGACCCATTA 58.017 45.455 0.00 0.00 0.00 1.90
159 160 3.957497 AGAGCTAGTGACTGACCCATTAG 59.043 47.826 0.00 0.00 0.00 1.73
160 161 2.432510 AGCTAGTGACTGACCCATTAGC 59.567 50.000 8.86 8.86 44.83 3.09
163 164 1.977854 AGTGACTGACCCATTAGCACA 59.022 47.619 0.00 0.00 0.00 4.57
164 165 2.371841 AGTGACTGACCCATTAGCACAA 59.628 45.455 0.00 0.00 0.00 3.33
165 166 3.146066 GTGACTGACCCATTAGCACAAA 58.854 45.455 0.00 0.00 0.00 2.83
166 167 3.058224 GTGACTGACCCATTAGCACAAAC 60.058 47.826 0.00 0.00 0.00 2.93
169 170 4.151883 ACTGACCCATTAGCACAAACATT 58.848 39.130 0.00 0.00 0.00 2.71
170 171 5.321102 ACTGACCCATTAGCACAAACATTA 58.679 37.500 0.00 0.00 0.00 1.90
172 173 5.321102 TGACCCATTAGCACAAACATTACT 58.679 37.500 0.00 0.00 0.00 2.24
173 174 5.414454 TGACCCATTAGCACAAACATTACTC 59.586 40.000 0.00 0.00 0.00 2.59
174 175 5.570320 ACCCATTAGCACAAACATTACTCT 58.430 37.500 0.00 0.00 0.00 3.24
175 176 6.010219 ACCCATTAGCACAAACATTACTCTT 58.990 36.000 0.00 0.00 0.00 2.85
176 177 7.172342 ACCCATTAGCACAAACATTACTCTTA 58.828 34.615 0.00 0.00 0.00 2.10
179 180 8.391106 CCATTAGCACAAACATTACTCTTACTC 58.609 37.037 0.00 0.00 0.00 2.59
180 181 7.576750 TTAGCACAAACATTACTCTTACTCG 57.423 36.000 0.00 0.00 0.00 4.18
181 182 4.929808 AGCACAAACATTACTCTTACTCGG 59.070 41.667 0.00 0.00 0.00 4.63
182 183 4.927425 GCACAAACATTACTCTTACTCGGA 59.073 41.667 0.00 0.00 0.00 4.55
183 184 5.407387 GCACAAACATTACTCTTACTCGGAA 59.593 40.000 0.00 0.00 0.00 4.30
197 198 4.829588 GGAACGTACAGCCTAGCC 57.170 61.111 0.00 0.00 0.00 3.93
198 199 1.895238 GGAACGTACAGCCTAGCCA 59.105 57.895 0.00 0.00 0.00 4.75
199 200 0.179108 GGAACGTACAGCCTAGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
200 201 0.815734 GAACGTACAGCCTAGCCAGA 59.184 55.000 0.00 0.00 0.00 3.86
201 202 1.203994 GAACGTACAGCCTAGCCAGAA 59.796 52.381 0.00 0.00 0.00 3.02
203 204 0.525668 CGTACAGCCTAGCCAGAACG 60.526 60.000 0.00 0.00 0.00 3.95
204 205 0.815734 GTACAGCCTAGCCAGAACGA 59.184 55.000 0.00 0.00 0.00 3.85
206 207 0.905357 ACAGCCTAGCCAGAACGATT 59.095 50.000 0.00 0.00 0.00 3.34
207 208 1.279271 ACAGCCTAGCCAGAACGATTT 59.721 47.619 0.00 0.00 0.00 2.17
208 209 1.667724 CAGCCTAGCCAGAACGATTTG 59.332 52.381 0.00 0.00 0.00 2.32
212 213 1.324736 CTAGCCAGAACGATTTGACGC 59.675 52.381 0.00 0.00 36.70 5.19
213 214 0.602638 AGCCAGAACGATTTGACGCA 60.603 50.000 0.00 0.00 36.70 5.24
214 215 0.447801 GCCAGAACGATTTGACGCAT 59.552 50.000 0.00 0.00 36.70 4.73
215 216 1.529826 GCCAGAACGATTTGACGCATC 60.530 52.381 0.00 0.00 36.70 3.91
222 223 2.879248 CGATTTGACGCATCGTACATG 58.121 47.619 0.00 0.00 41.37 3.21
223 224 2.533942 CGATTTGACGCATCGTACATGA 59.466 45.455 0.00 0.00 41.37 3.07
224 225 3.361051 CGATTTGACGCATCGTACATGAG 60.361 47.826 0.00 7.98 41.37 2.90
225 226 1.921243 TTGACGCATCGTACATGAGG 58.079 50.000 0.00 0.00 41.37 3.86
226 227 1.099689 TGACGCATCGTACATGAGGA 58.900 50.000 0.00 0.00 41.37 3.71
227 228 1.681264 TGACGCATCGTACATGAGGAT 59.319 47.619 0.00 0.00 41.37 3.24
245 246 2.768253 ATGACCTGCATCACTCGAAA 57.232 45.000 0.00 0.00 28.85 3.46
246 247 1.795768 TGACCTGCATCACTCGAAAC 58.204 50.000 0.00 0.00 0.00 2.78
248 249 2.289631 TGACCTGCATCACTCGAAACAT 60.290 45.455 0.00 0.00 0.00 2.71
249 250 2.079158 ACCTGCATCACTCGAAACATG 58.921 47.619 0.00 0.00 0.00 3.21
250 251 2.079158 CCTGCATCACTCGAAACATGT 58.921 47.619 0.00 0.00 0.00 3.21
251 252 2.485426 CCTGCATCACTCGAAACATGTT 59.515 45.455 4.92 4.92 0.00 2.71
252 253 3.485633 CTGCATCACTCGAAACATGTTG 58.514 45.455 12.82 1.67 0.00 3.33
253 254 2.245096 GCATCACTCGAAACATGTTGC 58.755 47.619 12.82 9.54 33.35 4.17
254 255 2.095567 GCATCACTCGAAACATGTTGCT 60.096 45.455 12.82 0.00 36.54 3.91
255 256 3.485633 CATCACTCGAAACATGTTGCTG 58.514 45.455 12.82 8.27 0.00 4.41
256 257 2.832563 TCACTCGAAACATGTTGCTGA 58.167 42.857 12.82 7.37 0.00 4.26
257 258 3.402110 TCACTCGAAACATGTTGCTGAT 58.598 40.909 12.82 0.00 0.00 2.90
258 259 3.433274 TCACTCGAAACATGTTGCTGATC 59.567 43.478 12.82 4.47 0.00 2.92
259 260 3.434641 CACTCGAAACATGTTGCTGATCT 59.565 43.478 12.82 0.00 0.00 2.75
261 262 4.083643 ACTCGAAACATGTTGCTGATCTTG 60.084 41.667 12.82 0.00 0.00 3.02
262 263 3.814842 TCGAAACATGTTGCTGATCTTGT 59.185 39.130 12.82 0.00 0.00 3.16
263 264 4.083855 TCGAAACATGTTGCTGATCTTGTC 60.084 41.667 12.82 0.68 0.00 3.18
264 265 4.479619 GAAACATGTTGCTGATCTTGTCC 58.520 43.478 12.82 0.00 0.00 4.02
265 266 3.144657 ACATGTTGCTGATCTTGTCCA 57.855 42.857 0.00 0.00 0.00 4.02
266 267 3.079578 ACATGTTGCTGATCTTGTCCAG 58.920 45.455 0.00 0.00 0.00 3.86
268 269 2.771089 TGTTGCTGATCTTGTCCAGTC 58.229 47.619 0.00 0.00 33.19 3.51
269 270 2.079925 GTTGCTGATCTTGTCCAGTCC 58.920 52.381 0.00 0.00 33.19 3.85
271 272 1.552337 TGCTGATCTTGTCCAGTCCTC 59.448 52.381 0.00 0.00 33.19 3.71
272 273 1.830477 GCTGATCTTGTCCAGTCCTCT 59.170 52.381 0.00 0.00 33.19 3.69
273 274 3.027412 GCTGATCTTGTCCAGTCCTCTA 58.973 50.000 0.00 0.00 33.19 2.43
275 276 4.277476 CTGATCTTGTCCAGTCCTCTACT 58.723 47.826 0.00 0.00 39.81 2.57
276 277 4.678256 TGATCTTGTCCAGTCCTCTACTT 58.322 43.478 0.00 0.00 35.76 2.24
279 280 2.310779 TGTCCAGTCCTCTACTTGCT 57.689 50.000 0.00 0.00 35.76 3.91
281 282 3.774734 TGTCCAGTCCTCTACTTGCTTA 58.225 45.455 0.00 0.00 35.76 3.09
282 283 3.764434 TGTCCAGTCCTCTACTTGCTTAG 59.236 47.826 0.00 0.00 35.76 2.18
283 284 3.764972 GTCCAGTCCTCTACTTGCTTAGT 59.235 47.826 0.00 0.00 35.76 2.24
284 285 4.017808 TCCAGTCCTCTACTTGCTTAGTC 58.982 47.826 0.00 0.00 35.76 2.59
285 286 4.020543 CCAGTCCTCTACTTGCTTAGTCT 58.979 47.826 0.00 0.00 35.76 3.24
286 287 5.045066 TCCAGTCCTCTACTTGCTTAGTCTA 60.045 44.000 0.00 0.00 35.76 2.59
287 288 5.830991 CCAGTCCTCTACTTGCTTAGTCTAT 59.169 44.000 0.00 0.00 35.76 1.98
288 289 6.238897 CCAGTCCTCTACTTGCTTAGTCTATG 60.239 46.154 0.00 0.00 35.76 2.23
289 290 6.320164 CAGTCCTCTACTTGCTTAGTCTATGT 59.680 42.308 0.00 0.00 35.76 2.29
290 291 6.320164 AGTCCTCTACTTGCTTAGTCTATGTG 59.680 42.308 0.00 0.00 38.33 3.21
291 292 6.095720 GTCCTCTACTTGCTTAGTCTATGTGT 59.904 42.308 0.00 0.00 38.33 3.72
292 293 6.095580 TCCTCTACTTGCTTAGTCTATGTGTG 59.904 42.308 0.00 0.00 38.33 3.82
293 294 6.095580 CCTCTACTTGCTTAGTCTATGTGTGA 59.904 42.308 0.00 0.00 38.33 3.58
294 295 7.363007 CCTCTACTTGCTTAGTCTATGTGTGAA 60.363 40.741 0.00 0.00 38.33 3.18
296 297 5.482908 ACTTGCTTAGTCTATGTGTGAAGG 58.517 41.667 0.00 0.00 28.23 3.46
297 298 4.471904 TGCTTAGTCTATGTGTGAAGGG 57.528 45.455 0.00 0.00 0.00 3.95
298 299 4.093743 TGCTTAGTCTATGTGTGAAGGGA 58.906 43.478 0.00 0.00 0.00 4.20
299 300 4.160439 TGCTTAGTCTATGTGTGAAGGGAG 59.840 45.833 0.00 0.00 0.00 4.30
300 301 4.442192 GCTTAGTCTATGTGTGAAGGGAGG 60.442 50.000 0.00 0.00 0.00 4.30
301 302 2.472029 AGTCTATGTGTGAAGGGAGGG 58.528 52.381 0.00 0.00 0.00 4.30
302 303 2.044492 AGTCTATGTGTGAAGGGAGGGA 59.956 50.000 0.00 0.00 0.00 4.20
303 304 2.168728 GTCTATGTGTGAAGGGAGGGAC 59.831 54.545 0.00 0.00 0.00 4.46
305 306 1.747444 ATGTGTGAAGGGAGGGACTT 58.253 50.000 0.00 0.00 41.55 3.01
306 307 0.764890 TGTGTGAAGGGAGGGACTTG 59.235 55.000 0.00 0.00 41.55 3.16
307 308 0.036875 GTGTGAAGGGAGGGACTTGG 59.963 60.000 0.00 0.00 41.55 3.61
308 309 1.002011 GTGAAGGGAGGGACTTGGC 60.002 63.158 0.00 0.00 41.55 4.52
309 310 1.463214 TGAAGGGAGGGACTTGGCA 60.463 57.895 0.00 0.00 41.55 4.92
310 311 1.065410 TGAAGGGAGGGACTTGGCAA 61.065 55.000 0.00 0.00 41.55 4.52
311 312 0.112412 GAAGGGAGGGACTTGGCAAA 59.888 55.000 0.00 0.00 41.55 3.68
312 313 0.113190 AAGGGAGGGACTTGGCAAAG 59.887 55.000 0.00 0.00 41.55 2.77
314 315 0.895559 GGGAGGGACTTGGCAAAGTG 60.896 60.000 12.33 0.00 46.84 3.16
316 317 0.110486 GAGGGACTTGGCAAAGTGGA 59.890 55.000 12.33 0.00 46.84 4.02
318 319 1.147817 AGGGACTTGGCAAAGTGGAAT 59.852 47.619 12.33 0.00 46.84 3.01
321 322 1.546029 GACTTGGCAAAGTGGAATCCC 59.454 52.381 12.33 0.00 46.84 3.85
322 323 1.133199 ACTTGGCAAAGTGGAATCCCA 60.133 47.619 5.44 0.00 45.12 4.37
335 336 4.251103 GGAATCCCACTTATTCCCAACT 57.749 45.455 3.88 0.00 44.47 3.16
336 337 5.382664 GGAATCCCACTTATTCCCAACTA 57.617 43.478 3.88 0.00 44.47 2.24
337 338 5.762279 GGAATCCCACTTATTCCCAACTAA 58.238 41.667 3.88 0.00 44.47 2.24
340 341 5.382664 TCCCACTTATTCCCAACTAATCC 57.617 43.478 0.00 0.00 0.00 3.01
341 342 4.791334 TCCCACTTATTCCCAACTAATCCA 59.209 41.667 0.00 0.00 0.00 3.41
343 344 4.887655 CCACTTATTCCCAACTAATCCACC 59.112 45.833 0.00 0.00 0.00 4.61
344 345 5.340027 CCACTTATTCCCAACTAATCCACCT 60.340 44.000 0.00 0.00 0.00 4.00
345 346 6.126594 CCACTTATTCCCAACTAATCCACCTA 60.127 42.308 0.00 0.00 0.00 3.08
347 348 7.832187 CACTTATTCCCAACTAATCCACCTAAA 59.168 37.037 0.00 0.00 0.00 1.85
348 349 8.566109 ACTTATTCCCAACTAATCCACCTAAAT 58.434 33.333 0.00 0.00 0.00 1.40
349 350 9.421399 CTTATTCCCAACTAATCCACCTAAATT 57.579 33.333 0.00 0.00 0.00 1.82
350 351 9.777008 TTATTCCCAACTAATCCACCTAAATTT 57.223 29.630 0.00 0.00 0.00 1.82
351 352 8.679344 ATTCCCAACTAATCCACCTAAATTTT 57.321 30.769 0.00 0.00 0.00 1.82
352 353 9.777008 ATTCCCAACTAATCCACCTAAATTTTA 57.223 29.630 0.00 0.00 0.00 1.52
354 355 8.395605 TCCCAACTAATCCACCTAAATTTTACT 58.604 33.333 0.00 0.00 0.00 2.24
355 356 9.689501 CCCAACTAATCCACCTAAATTTTACTA 57.310 33.333 0.00 0.00 0.00 1.82
374 375 8.669055 TTTACTAGGTTCTTAGTTATCACCCA 57.331 34.615 0.00 0.00 35.57 4.51
376 377 6.262207 ACTAGGTTCTTAGTTATCACCCACT 58.738 40.000 0.00 0.00 29.72 4.00
377 378 7.416731 ACTAGGTTCTTAGTTATCACCCACTA 58.583 38.462 0.00 0.00 29.72 2.74
380 381 7.392418 AGGTTCTTAGTTATCACCCACTAAAC 58.608 38.462 0.00 0.00 35.53 2.01
381 382 7.237055 AGGTTCTTAGTTATCACCCACTAAACT 59.763 37.037 0.00 0.00 35.53 2.66
384 385 8.842358 TCTTAGTTATCACCCACTAAACTTTG 57.158 34.615 0.00 0.00 35.53 2.77
385 386 8.653191 TCTTAGTTATCACCCACTAAACTTTGA 58.347 33.333 0.00 0.00 35.53 2.69
386 387 9.449719 CTTAGTTATCACCCACTAAACTTTGAT 57.550 33.333 0.00 0.00 35.53 2.57
387 388 7.687941 AGTTATCACCCACTAAACTTTGATG 57.312 36.000 0.00 0.00 0.00 3.07
388 389 6.659242 AGTTATCACCCACTAAACTTTGATGG 59.341 38.462 0.00 0.00 0.00 3.51
395 396 6.743575 CCACTAAACTTTGATGGGACTAAG 57.256 41.667 0.00 0.00 0.00 2.18
396 397 6.238648 CCACTAAACTTTGATGGGACTAAGT 58.761 40.000 0.00 0.00 37.42 2.24
397 398 6.149474 CCACTAAACTTTGATGGGACTAAGTG 59.851 42.308 0.00 0.00 36.40 3.16
398 399 6.149474 CACTAAACTTTGATGGGACTAAGTGG 59.851 42.308 0.00 0.00 36.40 4.00
399 400 4.993705 AACTTTGATGGGACTAAGTGGA 57.006 40.909 0.00 0.00 36.40 4.02
400 401 5.520748 AACTTTGATGGGACTAAGTGGAT 57.479 39.130 0.00 0.00 36.40 3.41
401 402 5.520748 ACTTTGATGGGACTAAGTGGATT 57.479 39.130 0.00 0.00 35.39 3.01
402 403 5.256474 ACTTTGATGGGACTAAGTGGATTG 58.744 41.667 0.00 0.00 35.39 2.67
403 404 4.927267 TTGATGGGACTAAGTGGATTGT 57.073 40.909 0.00 0.00 0.00 2.71
404 405 4.220693 TGATGGGACTAAGTGGATTGTG 57.779 45.455 0.00 0.00 0.00 3.33
405 406 3.054434 TGATGGGACTAAGTGGATTGTGG 60.054 47.826 0.00 0.00 0.00 4.17
406 407 2.344592 TGGGACTAAGTGGATTGTGGT 58.655 47.619 0.00 0.00 0.00 4.16
407 408 2.039746 TGGGACTAAGTGGATTGTGGTG 59.960 50.000 0.00 0.00 0.00 4.17
409 410 2.618045 GGACTAAGTGGATTGTGGTGGG 60.618 54.545 0.00 0.00 0.00 4.61
410 411 2.304761 GACTAAGTGGATTGTGGTGGGA 59.695 50.000 0.00 0.00 0.00 4.37
411 412 2.039879 ACTAAGTGGATTGTGGTGGGAC 59.960 50.000 0.00 0.00 0.00 4.46
425 426 1.299976 GGGACACCCACATCCAGTC 59.700 63.158 1.54 0.00 44.65 3.51
426 427 1.299976 GGACACCCACATCCAGTCC 59.700 63.158 0.00 0.00 41.59 3.85
428 429 1.463214 ACACCCACATCCAGTCCCA 60.463 57.895 0.00 0.00 0.00 4.37
429 430 1.002134 CACCCACATCCAGTCCCAC 60.002 63.158 0.00 0.00 0.00 4.61
430 431 2.231380 ACCCACATCCAGTCCCACC 61.231 63.158 0.00 0.00 0.00 4.61
431 432 1.925455 CCCACATCCAGTCCCACCT 60.925 63.158 0.00 0.00 0.00 4.00
432 433 1.300963 CCACATCCAGTCCCACCTG 59.699 63.158 0.00 0.00 0.00 4.00
434 435 1.847506 ACATCCAGTCCCACCTGCA 60.848 57.895 0.00 0.00 0.00 4.41
436 437 2.976490 ATCCAGTCCCACCTGCAGC 61.976 63.158 8.66 0.00 0.00 5.25
437 438 4.729918 CCAGTCCCACCTGCAGCC 62.730 72.222 8.66 0.00 0.00 4.85
438 439 3.644606 CAGTCCCACCTGCAGCCT 61.645 66.667 8.66 0.00 0.00 4.58
440 441 3.640407 GTCCCACCTGCAGCCTGA 61.640 66.667 8.66 0.00 0.00 3.86
441 442 3.324930 TCCCACCTGCAGCCTGAG 61.325 66.667 8.66 0.00 0.00 3.35
462 463 3.535561 GCTATAAGGCAGCTGTTTGAGA 58.464 45.455 16.64 0.00 36.07 3.27
465 466 2.283145 AAGGCAGCTGTTTGAGATGT 57.717 45.000 16.64 0.00 40.48 3.06
466 467 2.283145 AGGCAGCTGTTTGAGATGTT 57.717 45.000 16.64 0.00 40.48 2.71
467 468 2.590821 AGGCAGCTGTTTGAGATGTTT 58.409 42.857 16.64 0.00 40.48 2.83
468 469 2.295349 AGGCAGCTGTTTGAGATGTTTG 59.705 45.455 16.64 0.00 40.48 2.93
469 470 2.035066 GGCAGCTGTTTGAGATGTTTGT 59.965 45.455 16.64 0.00 40.48 2.83
470 471 3.253188 GGCAGCTGTTTGAGATGTTTGTA 59.747 43.478 16.64 0.00 40.48 2.41
473 474 5.616424 GCAGCTGTTTGAGATGTTTGTAGAG 60.616 44.000 16.64 0.00 40.48 2.43
474 475 5.698089 CAGCTGTTTGAGATGTTTGTAGAGA 59.302 40.000 5.25 0.00 33.07 3.10
475 476 5.698545 AGCTGTTTGAGATGTTTGTAGAGAC 59.301 40.000 0.00 0.00 0.00 3.36
476 477 5.466728 GCTGTTTGAGATGTTTGTAGAGACA 59.533 40.000 0.00 0.00 0.00 3.41
477 478 6.148480 GCTGTTTGAGATGTTTGTAGAGACAT 59.852 38.462 0.00 0.00 39.09 3.06
478 479 7.331934 GCTGTTTGAGATGTTTGTAGAGACATA 59.668 37.037 0.00 0.00 36.67 2.29
479 480 9.376075 CTGTTTGAGATGTTTGTAGAGACATAT 57.624 33.333 0.00 0.00 36.67 1.78
480 481 9.371136 TGTTTGAGATGTTTGTAGAGACATATC 57.629 33.333 10.23 10.23 42.10 1.63
483 484 9.591792 TTGAGATGTTTGTAGAGACATATCTTG 57.408 33.333 15.99 0.00 42.19 3.02
484 485 8.753133 TGAGATGTTTGTAGAGACATATCTTGT 58.247 33.333 15.99 0.00 42.19 3.16
485 486 8.939201 AGATGTTTGTAGAGACATATCTTGTG 57.061 34.615 0.00 0.00 39.18 3.33
488 489 5.939764 TTGTAGAGACATATCTTGTGCCT 57.060 39.130 0.00 0.00 39.18 4.75
489 490 5.939764 TGTAGAGACATATCTTGTGCCTT 57.060 39.130 0.00 0.00 39.18 4.35
491 492 7.603180 TGTAGAGACATATCTTGTGCCTTAT 57.397 36.000 0.00 0.00 39.18 1.73
493 494 8.486210 TGTAGAGACATATCTTGTGCCTTATTT 58.514 33.333 0.00 0.00 39.18 1.40
494 495 8.983724 GTAGAGACATATCTTGTGCCTTATTTC 58.016 37.037 0.00 0.00 39.18 2.17
495 496 7.800092 AGAGACATATCTTGTGCCTTATTTCT 58.200 34.615 0.00 0.00 39.18 2.52
496 497 8.928448 AGAGACATATCTTGTGCCTTATTTCTA 58.072 33.333 0.00 0.00 39.18 2.10
497 498 9.202273 GAGACATATCTTGTGCCTTATTTCTAG 57.798 37.037 0.00 0.00 39.18 2.43
499 500 7.512992 ACATATCTTGTGCCTTATTTCTAGCT 58.487 34.615 0.00 0.00 37.11 3.32
501 502 9.494271 CATATCTTGTGCCTTATTTCTAGCTTA 57.506 33.333 0.00 0.00 0.00 3.09
521 1795 6.483640 AGCTTATAAAAATAGGCCTTCACTCG 59.516 38.462 12.58 0.00 30.45 4.18
554 1828 0.950836 CAACAATGAAGCGACACCCA 59.049 50.000 0.00 0.00 0.00 4.51
555 1829 1.541147 CAACAATGAAGCGACACCCAT 59.459 47.619 0.00 0.00 0.00 4.00
556 1830 1.909700 ACAATGAAGCGACACCCATT 58.090 45.000 0.00 0.00 0.00 3.16
597 1892 1.610624 CCTACAGACGTGCATTGGGTT 60.611 52.381 0.00 0.00 0.00 4.11
598 1893 1.464608 CTACAGACGTGCATTGGGTTG 59.535 52.381 0.00 0.00 0.00 3.77
599 1894 1.172180 ACAGACGTGCATTGGGTTGG 61.172 55.000 0.00 0.00 0.00 3.77
600 1895 1.603455 AGACGTGCATTGGGTTGGG 60.603 57.895 0.00 0.00 0.00 4.12
601 1896 1.901464 GACGTGCATTGGGTTGGGT 60.901 57.895 0.00 0.00 0.00 4.51
602 1897 1.456705 ACGTGCATTGGGTTGGGTT 60.457 52.632 0.00 0.00 0.00 4.11
603 1898 1.006337 CGTGCATTGGGTTGGGTTG 60.006 57.895 0.00 0.00 0.00 3.77
604 1899 1.301637 GTGCATTGGGTTGGGTTGC 60.302 57.895 0.00 0.00 0.00 4.17
605 1900 1.763655 TGCATTGGGTTGGGTTGCA 60.764 52.632 0.00 0.00 40.73 4.08
606 1901 1.004679 GCATTGGGTTGGGTTGCAG 60.005 57.895 0.00 0.00 33.58 4.41
607 1902 1.672898 CATTGGGTTGGGTTGCAGG 59.327 57.895 0.00 0.00 0.00 4.85
608 1903 1.536174 ATTGGGTTGGGTTGCAGGG 60.536 57.895 0.00 0.00 0.00 4.45
609 1904 4.932105 TGGGTTGGGTTGCAGGGC 62.932 66.667 0.00 0.00 0.00 5.19
611 1906 4.966787 GGTTGGGTTGCAGGGCGA 62.967 66.667 0.00 0.00 0.00 5.54
612 1907 2.676471 GTTGGGTTGCAGGGCGAT 60.676 61.111 0.00 0.00 0.00 4.58
613 1908 2.676121 TTGGGTTGCAGGGCGATG 60.676 61.111 0.00 0.00 0.00 3.84
635 1930 5.260424 TGCCATTACATATGGTCACAAACT 58.740 37.500 7.80 0.00 41.17 2.66
666 1961 0.519077 GCCCAAAAGCTCGAGAGTTG 59.481 55.000 18.75 15.31 0.00 3.16
676 1971 0.389817 TCGAGAGTTGGGCGAACATG 60.390 55.000 14.88 0.00 36.98 3.21
718 2013 6.659824 CAAACCTGTAAATAGGACCATACCT 58.340 40.000 0.00 0.00 40.42 3.08
797 2092 0.745845 CTTCAGTGGCCCCAATCTCG 60.746 60.000 0.00 0.00 0.00 4.04
1153 2664 2.279517 GTCGGCTCGCCATGGTAG 60.280 66.667 14.67 12.45 35.37 3.18
1168 2683 1.380112 GTAGGCTCCTGTCCTCCGT 60.380 63.158 0.00 0.00 35.21 4.69
1169 2684 1.076923 TAGGCTCCTGTCCTCCGTC 60.077 63.158 0.00 0.00 35.21 4.79
1270 2785 1.634702 GATGTCTTGCTCTGACCGTC 58.365 55.000 0.00 0.00 33.83 4.79
1395 2910 2.070639 CCTCCCATTAGCCCTAGCC 58.929 63.158 0.00 0.00 41.25 3.93
1472 3000 3.075005 AGGGCCATGTACGACGCT 61.075 61.111 6.18 0.00 0.00 5.07
1491 3019 1.281925 TGGCCTCTTTGATCCCCTCC 61.282 60.000 3.32 0.00 0.00 4.30
1540 3070 4.473199 GTTTCTTTCCGTGCTTATTGTCC 58.527 43.478 0.00 0.00 0.00 4.02
1547 3077 1.801395 CGTGCTTATTGTCCCGTCGAT 60.801 52.381 0.00 0.00 0.00 3.59
1629 3167 1.745087 GACCGACGTACAATGTCCCTA 59.255 52.381 0.00 0.00 30.49 3.53
1644 3182 6.670695 ATGTCCCTAAAATTTTGCTCTTGT 57.329 33.333 13.76 0.00 0.00 3.16
1743 3281 2.267961 CGCTGACCCAACTACCCC 59.732 66.667 0.00 0.00 0.00 4.95
1744 3282 2.675371 GCTGACCCAACTACCCCC 59.325 66.667 0.00 0.00 0.00 5.40
1746 3284 1.916777 CTGACCCAACTACCCCCGT 60.917 63.158 0.00 0.00 0.00 5.28
1751 3289 1.004200 CCAACTACCCCCGTGACAC 60.004 63.158 0.00 0.00 0.00 3.67
1752 3290 1.477685 CCAACTACCCCCGTGACACT 61.478 60.000 3.68 0.00 0.00 3.55
1754 3292 1.203994 CAACTACCCCCGTGACACTAG 59.796 57.143 3.68 0.91 0.00 2.57
1756 3294 1.203100 ACTACCCCCGTGACACTAGTT 60.203 52.381 3.68 0.00 0.00 2.24
1769 3322 7.274033 CCGTGACACTAGTTTAATCGTGATTAA 59.726 37.037 10.25 10.25 40.39 1.40
1770 3323 8.311822 CGTGACACTAGTTTAATCGTGATTAAG 58.688 37.037 13.13 6.39 42.26 1.85
1771 3324 9.136952 GTGACACTAGTTTAATCGTGATTAAGT 57.863 33.333 13.13 8.17 42.26 2.24
1774 3327 9.578439 ACACTAGTTTAATCGTGATTAAGTACC 57.422 33.333 13.13 5.66 42.26 3.34
1783 3337 5.845103 TCGTGATTAAGTACCTGTTGAACA 58.155 37.500 0.00 0.00 0.00 3.18
1794 3348 7.370383 AGTACCTGTTGAACAATTTGCTATTG 58.630 34.615 0.00 9.62 35.29 1.90
2114 3671 3.765381 TCAGAATTGTTGCTCAATCCCA 58.235 40.909 7.82 0.00 44.85 4.37
2214 3771 4.043200 GCTGGTTGGTGCTTCGGC 62.043 66.667 0.00 0.00 42.19 5.54
2258 3815 2.438434 CGGCCGCCCAAAGATTCT 60.438 61.111 14.67 0.00 0.00 2.40
2263 3820 1.604278 GCCGCCCAAAGATTCTATCAC 59.396 52.381 0.00 0.00 0.00 3.06
2369 3926 0.318762 GGTGAGTCCTGTCCTGTGTC 59.681 60.000 0.00 0.00 0.00 3.67
2370 3927 0.318762 GTGAGTCCTGTCCTGTGTCC 59.681 60.000 0.00 0.00 0.00 4.02
2407 3977 0.326595 TTTGGCCTGCCATTACGAGA 59.673 50.000 12.40 0.00 46.64 4.04
2408 3978 0.107703 TTGGCCTGCCATTACGAGAG 60.108 55.000 12.40 0.00 46.64 3.20
2425 3995 1.202770 AGAGTACCACAGGCACAAACC 60.203 52.381 0.00 0.00 0.00 3.27
2439 4009 2.965147 CACAAACCTCCCCATTGTCTTT 59.035 45.455 0.00 0.00 35.22 2.52
2440 4010 2.965147 ACAAACCTCCCCATTGTCTTTG 59.035 45.455 0.00 0.00 32.02 2.77
2470 4046 2.419667 GCTTTGCCAACTTCGGTAGTA 58.580 47.619 0.00 0.00 35.54 1.82
2522 4098 2.355837 TCTTGTCTCGTGCCGTGC 60.356 61.111 0.00 0.00 0.00 5.34
2652 4236 4.933064 GTCGAGATCAGCGGCGGG 62.933 72.222 9.78 0.00 0.00 6.13
2742 4326 2.296792 CCATCATCCGTATTTGCCACA 58.703 47.619 0.00 0.00 0.00 4.17
2971 4562 0.109179 CGTTTCGTGGTCCACCGATA 60.109 55.000 16.60 9.17 39.43 2.92
2972 4563 1.353076 GTTTCGTGGTCCACCGATAC 58.647 55.000 16.60 16.02 39.43 2.24
2985 4581 2.936498 CACCGATACAACCTCAATGGAC 59.064 50.000 0.00 0.00 39.71 4.02
2986 4582 2.569853 ACCGATACAACCTCAATGGACA 59.430 45.455 0.00 0.00 39.71 4.02
2987 4583 3.008594 ACCGATACAACCTCAATGGACAA 59.991 43.478 0.00 0.00 39.71 3.18
2988 4584 3.374058 CCGATACAACCTCAATGGACAAC 59.626 47.826 0.00 0.00 39.71 3.32
2989 4585 3.374058 CGATACAACCTCAATGGACAACC 59.626 47.826 0.00 0.00 39.71 3.77
2990 4586 4.589908 GATACAACCTCAATGGACAACCT 58.410 43.478 0.00 0.00 39.71 3.50
2991 4587 5.625886 CGATACAACCTCAATGGACAACCTA 60.626 44.000 0.00 0.00 39.71 3.08
2992 4588 4.657814 ACAACCTCAATGGACAACCTAT 57.342 40.909 0.00 0.00 39.71 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.691342 CCAAGGTCGTCCTGCCGA 61.691 66.667 0.76 0.00 44.35 5.54
15 16 4.699522 AGGAACGGCGCCAAGGTC 62.700 66.667 28.98 19.20 0.00 3.85
33 34 2.750888 GGCAATGGCGGAGTTCGTC 61.751 63.158 0.00 0.00 44.94 4.20
34 35 2.746277 GGCAATGGCGGAGTTCGT 60.746 61.111 0.00 0.00 42.47 3.85
56 57 3.142162 CCGCTGATGGCATTGGCA 61.142 61.111 15.86 15.86 43.71 4.92
57 58 3.142838 ACCGCTGATGGCATTGGC 61.143 61.111 0.00 8.43 41.91 4.52
58 59 2.802792 CACCGCTGATGGCATTGG 59.197 61.111 0.00 4.47 41.91 3.16
59 60 2.103538 GCACCGCTGATGGCATTG 59.896 61.111 0.00 0.00 41.91 2.82
60 61 3.142838 GGCACCGCTGATGGCATT 61.143 61.111 0.00 0.00 42.03 3.56
61 62 4.429522 TGGCACCGCTGATGGCAT 62.430 61.111 0.00 0.00 46.63 4.40
63 64 2.947938 ATACTGGCACCGCTGATGGC 62.948 60.000 0.00 0.00 42.74 4.40
64 65 0.464373 AATACTGGCACCGCTGATGG 60.464 55.000 0.00 0.00 0.00 3.51
65 66 0.940126 GAATACTGGCACCGCTGATG 59.060 55.000 0.00 0.00 0.00 3.07
66 67 0.541392 TGAATACTGGCACCGCTGAT 59.459 50.000 0.00 0.00 0.00 2.90
67 68 0.541392 ATGAATACTGGCACCGCTGA 59.459 50.000 0.00 0.00 0.00 4.26
68 69 0.659427 CATGAATACTGGCACCGCTG 59.341 55.000 0.00 0.00 0.00 5.18
70 71 2.024918 CCATGAATACTGGCACCGC 58.975 57.895 0.00 0.00 0.00 5.68
77 78 2.301346 GGGAAGGTGCCATGAATACTG 58.699 52.381 0.00 0.00 0.00 2.74
79 80 2.301346 CTGGGAAGGTGCCATGAATAC 58.699 52.381 0.00 0.00 37.20 1.89
80 81 1.410083 GCTGGGAAGGTGCCATGAATA 60.410 52.381 0.00 0.00 37.20 1.75
82 83 1.304381 GCTGGGAAGGTGCCATGAA 60.304 57.895 0.00 0.00 37.20 2.57
84 85 2.757099 GGCTGGGAAGGTGCCATG 60.757 66.667 0.00 0.00 45.46 3.66
89 90 1.303643 GAGGTTGGCTGGGAAGGTG 60.304 63.158 0.00 0.00 0.00 4.00
90 91 1.464198 AGAGGTTGGCTGGGAAGGT 60.464 57.895 0.00 0.00 0.00 3.50
91 92 1.001641 CAGAGGTTGGCTGGGAAGG 60.002 63.158 0.00 0.00 0.00 3.46
92 93 4.730487 CAGAGGTTGGCTGGGAAG 57.270 61.111 0.00 0.00 0.00 3.46
102 103 1.607756 TCTCGAGCTGCCAGAGGTT 60.608 57.895 17.88 0.00 30.42 3.50
103 104 2.036414 TCTCGAGCTGCCAGAGGT 59.964 61.111 17.88 0.00 34.09 3.85
105 106 2.493973 GGTCTCGAGCTGCCAGAG 59.506 66.667 7.81 13.65 0.00 3.35
106 107 3.443925 CGGTCTCGAGCTGCCAGA 61.444 66.667 7.81 0.00 39.00 3.86
107 108 3.753434 ACGGTCTCGAGCTGCCAG 61.753 66.667 7.81 8.67 40.11 4.85
108 109 4.056125 CACGGTCTCGAGCTGCCA 62.056 66.667 7.81 0.00 40.11 4.92
110 111 3.691744 CTCCACGGTCTCGAGCTGC 62.692 68.421 7.81 0.00 40.11 5.25
111 112 1.025113 TACTCCACGGTCTCGAGCTG 61.025 60.000 7.81 10.65 40.11 4.24
112 113 0.745128 CTACTCCACGGTCTCGAGCT 60.745 60.000 7.81 0.00 40.11 4.09
113 114 1.722677 CTACTCCACGGTCTCGAGC 59.277 63.158 7.81 2.69 40.11 5.03
114 115 1.025113 TGCTACTCCACGGTCTCGAG 61.025 60.000 5.93 5.93 40.11 4.04
116 117 0.248661 CATGCTACTCCACGGTCTCG 60.249 60.000 0.00 0.00 43.02 4.04
119 120 2.022195 TCTACATGCTACTCCACGGTC 58.978 52.381 0.00 0.00 0.00 4.79
121 122 1.269309 GCTCTACATGCTACTCCACGG 60.269 57.143 0.00 0.00 0.00 4.94
122 123 1.678627 AGCTCTACATGCTACTCCACG 59.321 52.381 0.00 0.00 39.21 4.94
123 124 3.886505 ACTAGCTCTACATGCTACTCCAC 59.113 47.826 0.00 0.00 41.46 4.02
124 125 3.885901 CACTAGCTCTACATGCTACTCCA 59.114 47.826 0.00 0.00 41.46 3.86
125 126 4.023536 GTCACTAGCTCTACATGCTACTCC 60.024 50.000 0.00 0.00 41.46 3.85
126 127 4.819630 AGTCACTAGCTCTACATGCTACTC 59.180 45.833 0.00 0.00 41.46 2.59
128 129 4.576873 TCAGTCACTAGCTCTACATGCTAC 59.423 45.833 0.00 0.00 41.46 3.58
129 130 4.576873 GTCAGTCACTAGCTCTACATGCTA 59.423 45.833 0.00 0.00 41.46 3.49
130 131 3.380004 GTCAGTCACTAGCTCTACATGCT 59.620 47.826 0.00 0.00 43.79 3.79
131 132 3.490078 GGTCAGTCACTAGCTCTACATGC 60.490 52.174 0.00 0.00 0.00 4.06
132 133 3.067461 GGGTCAGTCACTAGCTCTACATG 59.933 52.174 0.00 0.00 0.00 3.21
133 134 3.292460 GGGTCAGTCACTAGCTCTACAT 58.708 50.000 0.00 0.00 0.00 2.29
134 135 2.041216 TGGGTCAGTCACTAGCTCTACA 59.959 50.000 0.00 0.00 0.00 2.74
135 136 2.724454 TGGGTCAGTCACTAGCTCTAC 58.276 52.381 0.00 0.00 0.00 2.59
136 137 3.671740 ATGGGTCAGTCACTAGCTCTA 57.328 47.619 0.00 0.00 0.00 2.43
137 138 2.541233 ATGGGTCAGTCACTAGCTCT 57.459 50.000 0.00 0.00 0.00 4.09
139 140 2.432510 GCTAATGGGTCAGTCACTAGCT 59.567 50.000 0.00 0.00 0.00 3.32
140 141 2.168521 TGCTAATGGGTCAGTCACTAGC 59.831 50.000 0.00 0.00 0.00 3.42
141 142 3.195610 TGTGCTAATGGGTCAGTCACTAG 59.804 47.826 0.00 0.00 0.00 2.57
142 143 3.169908 TGTGCTAATGGGTCAGTCACTA 58.830 45.455 0.00 0.00 0.00 2.74
144 145 2.472695 TGTGCTAATGGGTCAGTCAC 57.527 50.000 0.00 0.00 0.00 3.67
146 147 3.146066 TGTTTGTGCTAATGGGTCAGTC 58.854 45.455 0.00 0.00 0.00 3.51
147 148 3.222173 TGTTTGTGCTAATGGGTCAGT 57.778 42.857 0.00 0.00 0.00 3.41
148 149 4.789012 AATGTTTGTGCTAATGGGTCAG 57.211 40.909 0.00 0.00 0.00 3.51
149 150 5.321102 AGTAATGTTTGTGCTAATGGGTCA 58.679 37.500 0.00 0.00 0.00 4.02
150 151 5.648092 AGAGTAATGTTTGTGCTAATGGGTC 59.352 40.000 0.00 0.00 0.00 4.46
152 153 6.515272 AAGAGTAATGTTTGTGCTAATGGG 57.485 37.500 0.00 0.00 0.00 4.00
153 154 8.268850 AGTAAGAGTAATGTTTGTGCTAATGG 57.731 34.615 0.00 0.00 0.00 3.16
154 155 8.110612 CGAGTAAGAGTAATGTTTGTGCTAATG 58.889 37.037 0.00 0.00 0.00 1.90
155 156 7.277981 CCGAGTAAGAGTAATGTTTGTGCTAAT 59.722 37.037 0.00 0.00 0.00 1.73
156 157 6.588756 CCGAGTAAGAGTAATGTTTGTGCTAA 59.411 38.462 0.00 0.00 0.00 3.09
157 158 6.071784 TCCGAGTAAGAGTAATGTTTGTGCTA 60.072 38.462 0.00 0.00 0.00 3.49
158 159 4.929808 CCGAGTAAGAGTAATGTTTGTGCT 59.070 41.667 0.00 0.00 0.00 4.40
159 160 4.927425 TCCGAGTAAGAGTAATGTTTGTGC 59.073 41.667 0.00 0.00 0.00 4.57
160 161 6.399669 CGTTCCGAGTAAGAGTAATGTTTGTG 60.400 42.308 0.00 0.00 0.00 3.33
163 164 5.776744 ACGTTCCGAGTAAGAGTAATGTTT 58.223 37.500 0.00 0.00 0.00 2.83
164 165 5.382618 ACGTTCCGAGTAAGAGTAATGTT 57.617 39.130 0.00 0.00 0.00 2.71
165 166 5.412594 TGTACGTTCCGAGTAAGAGTAATGT 59.587 40.000 0.00 0.00 0.00 2.71
166 167 5.872635 TGTACGTTCCGAGTAAGAGTAATG 58.127 41.667 0.00 0.00 0.00 1.90
169 170 3.372206 GCTGTACGTTCCGAGTAAGAGTA 59.628 47.826 0.00 0.00 0.00 2.59
170 171 2.161211 GCTGTACGTTCCGAGTAAGAGT 59.839 50.000 0.00 0.00 0.00 3.24
172 173 1.470098 GGCTGTACGTTCCGAGTAAGA 59.530 52.381 0.00 0.00 0.00 2.10
173 174 1.471684 AGGCTGTACGTTCCGAGTAAG 59.528 52.381 0.00 0.00 0.00 2.34
174 175 1.538047 AGGCTGTACGTTCCGAGTAA 58.462 50.000 0.00 0.00 0.00 2.24
175 176 2.283298 CTAGGCTGTACGTTCCGAGTA 58.717 52.381 0.00 0.00 0.00 2.59
176 177 1.093159 CTAGGCTGTACGTTCCGAGT 58.907 55.000 0.00 0.00 0.00 4.18
179 180 1.226888 GGCTAGGCTGTACGTTCCG 60.227 63.158 9.46 0.00 0.00 4.30
180 181 0.179108 CTGGCTAGGCTGTACGTTCC 60.179 60.000 18.18 0.00 0.00 3.62
181 182 0.815734 TCTGGCTAGGCTGTACGTTC 59.184 55.000 18.18 0.00 0.00 3.95
182 183 1.067071 GTTCTGGCTAGGCTGTACGTT 60.067 52.381 18.18 0.00 0.00 3.99
183 184 0.531200 GTTCTGGCTAGGCTGTACGT 59.469 55.000 18.18 0.00 0.00 3.57
185 186 0.815734 TCGTTCTGGCTAGGCTGTAC 59.184 55.000 18.18 18.28 0.00 2.90
186 187 1.776662 ATCGTTCTGGCTAGGCTGTA 58.223 50.000 18.18 8.13 0.00 2.74
187 188 0.905357 AATCGTTCTGGCTAGGCTGT 59.095 50.000 18.18 0.00 0.00 4.40
188 189 1.667724 CAAATCGTTCTGGCTAGGCTG 59.332 52.381 18.18 17.01 0.00 4.85
189 190 1.555075 TCAAATCGTTCTGGCTAGGCT 59.445 47.619 18.18 0.00 0.00 4.58
190 191 1.666189 GTCAAATCGTTCTGGCTAGGC 59.334 52.381 9.85 9.85 0.00 3.93
191 192 1.927174 CGTCAAATCGTTCTGGCTAGG 59.073 52.381 0.00 0.00 0.00 3.02
192 193 1.324736 GCGTCAAATCGTTCTGGCTAG 59.675 52.381 0.00 0.00 0.00 3.42
193 194 1.337354 TGCGTCAAATCGTTCTGGCTA 60.337 47.619 0.00 0.00 0.00 3.93
195 196 0.447801 ATGCGTCAAATCGTTCTGGC 59.552 50.000 0.00 0.00 0.00 4.85
196 197 1.267038 CGATGCGTCAAATCGTTCTGG 60.267 52.381 6.75 0.00 41.52 3.86
197 198 2.063330 CGATGCGTCAAATCGTTCTG 57.937 50.000 6.75 0.00 41.52 3.02
203 204 3.060272 CCTCATGTACGATGCGTCAAATC 60.060 47.826 6.75 0.00 41.54 2.17
204 205 2.866156 CCTCATGTACGATGCGTCAAAT 59.134 45.455 6.75 0.00 41.54 2.32
206 207 1.474879 TCCTCATGTACGATGCGTCAA 59.525 47.619 6.75 0.00 41.54 3.18
207 208 1.099689 TCCTCATGTACGATGCGTCA 58.900 50.000 6.75 0.00 41.54 4.35
208 209 2.054363 CATCCTCATGTACGATGCGTC 58.946 52.381 0.00 0.00 41.54 5.19
212 213 3.646946 CAGGTCATCCTCATGTACGATG 58.353 50.000 11.00 11.00 43.07 3.84
213 214 2.036475 GCAGGTCATCCTCATGTACGAT 59.964 50.000 0.00 0.00 43.07 3.73
214 215 1.409064 GCAGGTCATCCTCATGTACGA 59.591 52.381 0.00 0.00 43.07 3.43
215 216 1.136891 TGCAGGTCATCCTCATGTACG 59.863 52.381 0.00 0.00 43.07 3.67
216 217 2.988010 TGCAGGTCATCCTCATGTAC 57.012 50.000 0.00 0.00 43.07 2.90
218 219 2.634815 GATGCAGGTCATCCTCATGT 57.365 50.000 0.00 0.00 44.54 3.21
226 227 2.289631 TGTTTCGAGTGATGCAGGTCAT 60.290 45.455 0.00 0.00 38.32 3.06
227 228 1.069978 TGTTTCGAGTGATGCAGGTCA 59.930 47.619 0.00 0.00 0.00 4.02
228 229 1.795768 TGTTTCGAGTGATGCAGGTC 58.204 50.000 0.00 0.00 0.00 3.85
229 230 2.079158 CATGTTTCGAGTGATGCAGGT 58.921 47.619 0.00 0.00 0.00 4.00
231 232 3.485633 CAACATGTTTCGAGTGATGCAG 58.514 45.455 8.77 0.00 0.00 4.41
232 233 2.350676 GCAACATGTTTCGAGTGATGCA 60.351 45.455 8.77 0.00 40.17 3.96
233 234 2.095567 AGCAACATGTTTCGAGTGATGC 60.096 45.455 8.77 6.81 40.57 3.91
235 236 3.402110 TCAGCAACATGTTTCGAGTGAT 58.598 40.909 8.77 0.00 0.00 3.06
236 237 2.832563 TCAGCAACATGTTTCGAGTGA 58.167 42.857 8.77 1.40 0.00 3.41
237 238 3.434641 AGATCAGCAACATGTTTCGAGTG 59.565 43.478 8.77 0.00 0.00 3.51
238 239 3.668447 AGATCAGCAACATGTTTCGAGT 58.332 40.909 8.77 0.00 0.00 4.18
242 243 4.022935 TGGACAAGATCAGCAACATGTTTC 60.023 41.667 8.77 3.81 0.00 2.78
243 244 3.890756 TGGACAAGATCAGCAACATGTTT 59.109 39.130 8.77 0.00 0.00 2.83
245 246 3.079578 CTGGACAAGATCAGCAACATGT 58.920 45.455 0.00 0.00 0.00 3.21
246 247 3.079578 ACTGGACAAGATCAGCAACATG 58.920 45.455 0.00 0.00 34.57 3.21
248 249 2.550855 GGACTGGACAAGATCAGCAACA 60.551 50.000 0.00 0.00 34.57 3.33
249 250 2.079925 GGACTGGACAAGATCAGCAAC 58.920 52.381 0.00 0.00 34.57 4.17
250 251 1.980765 AGGACTGGACAAGATCAGCAA 59.019 47.619 0.00 0.00 34.57 3.91
251 252 1.552337 GAGGACTGGACAAGATCAGCA 59.448 52.381 0.00 0.00 34.57 4.41
252 253 1.830477 AGAGGACTGGACAAGATCAGC 59.170 52.381 0.00 0.00 34.57 4.26
253 254 4.277476 AGTAGAGGACTGGACAAGATCAG 58.723 47.826 0.00 0.00 36.87 2.90
254 255 4.323569 AGTAGAGGACTGGACAAGATCA 57.676 45.455 0.00 0.00 36.87 2.92
255 256 4.679372 GCAAGTAGAGGACTGGACAAGATC 60.679 50.000 0.00 0.00 38.87 2.75
256 257 3.196685 GCAAGTAGAGGACTGGACAAGAT 59.803 47.826 0.00 0.00 38.87 2.40
257 258 2.563179 GCAAGTAGAGGACTGGACAAGA 59.437 50.000 0.00 0.00 38.87 3.02
258 259 2.564947 AGCAAGTAGAGGACTGGACAAG 59.435 50.000 0.00 0.00 38.87 3.16
259 260 2.609747 AGCAAGTAGAGGACTGGACAA 58.390 47.619 0.00 0.00 38.87 3.18
261 262 3.764972 ACTAAGCAAGTAGAGGACTGGAC 59.235 47.826 0.00 0.00 38.87 4.02
262 263 4.017808 GACTAAGCAAGTAGAGGACTGGA 58.982 47.826 0.00 0.00 39.07 3.86
263 264 4.020543 AGACTAAGCAAGTAGAGGACTGG 58.979 47.826 0.00 0.00 39.07 4.00
264 265 6.320164 ACATAGACTAAGCAAGTAGAGGACTG 59.680 42.308 0.00 0.00 39.07 3.51
265 266 6.320164 CACATAGACTAAGCAAGTAGAGGACT 59.680 42.308 0.00 0.00 39.07 3.85
266 267 6.095720 ACACATAGACTAAGCAAGTAGAGGAC 59.904 42.308 0.00 0.00 39.07 3.85
268 269 6.095580 TCACACATAGACTAAGCAAGTAGAGG 59.904 42.308 0.00 0.00 39.07 3.69
269 270 7.089770 TCACACATAGACTAAGCAAGTAGAG 57.910 40.000 0.00 0.00 39.07 2.43
271 272 6.754209 CCTTCACACATAGACTAAGCAAGTAG 59.246 42.308 0.00 0.00 39.07 2.57
272 273 6.351033 CCCTTCACACATAGACTAAGCAAGTA 60.351 42.308 0.00 0.00 39.07 2.24
273 274 5.482908 CCTTCACACATAGACTAAGCAAGT 58.517 41.667 0.00 0.00 42.80 3.16
275 276 4.530553 TCCCTTCACACATAGACTAAGCAA 59.469 41.667 0.00 0.00 0.00 3.91
276 277 4.093743 TCCCTTCACACATAGACTAAGCA 58.906 43.478 0.00 0.00 0.00 3.91
279 280 4.030913 CCCTCCCTTCACACATAGACTAA 58.969 47.826 0.00 0.00 0.00 2.24
281 282 2.044492 TCCCTCCCTTCACACATAGACT 59.956 50.000 0.00 0.00 0.00 3.24
282 283 2.168728 GTCCCTCCCTTCACACATAGAC 59.831 54.545 0.00 0.00 0.00 2.59
283 284 2.044492 AGTCCCTCCCTTCACACATAGA 59.956 50.000 0.00 0.00 0.00 1.98
284 285 2.472029 AGTCCCTCCCTTCACACATAG 58.528 52.381 0.00 0.00 0.00 2.23
285 286 2.571653 CAAGTCCCTCCCTTCACACATA 59.428 50.000 0.00 0.00 0.00 2.29
286 287 1.352352 CAAGTCCCTCCCTTCACACAT 59.648 52.381 0.00 0.00 0.00 3.21
287 288 0.764890 CAAGTCCCTCCCTTCACACA 59.235 55.000 0.00 0.00 0.00 3.72
288 289 0.036875 CCAAGTCCCTCCCTTCACAC 59.963 60.000 0.00 0.00 0.00 3.82
289 290 1.779061 GCCAAGTCCCTCCCTTCACA 61.779 60.000 0.00 0.00 0.00 3.58
290 291 1.002011 GCCAAGTCCCTCCCTTCAC 60.002 63.158 0.00 0.00 0.00 3.18
291 292 1.065410 TTGCCAAGTCCCTCCCTTCA 61.065 55.000 0.00 0.00 0.00 3.02
292 293 0.112412 TTTGCCAAGTCCCTCCCTTC 59.888 55.000 0.00 0.00 0.00 3.46
293 294 0.113190 CTTTGCCAAGTCCCTCCCTT 59.887 55.000 0.00 0.00 0.00 3.95
294 295 1.068352 ACTTTGCCAAGTCCCTCCCT 61.068 55.000 0.00 0.00 39.15 4.20
296 297 0.895559 CCACTTTGCCAAGTCCCTCC 60.896 60.000 0.00 0.00 41.69 4.30
297 298 0.110486 TCCACTTTGCCAAGTCCCTC 59.890 55.000 0.00 0.00 41.69 4.30
298 299 0.555769 TTCCACTTTGCCAAGTCCCT 59.444 50.000 0.00 0.00 41.69 4.20
299 300 1.546029 GATTCCACTTTGCCAAGTCCC 59.454 52.381 0.00 0.00 41.69 4.46
300 301 1.546029 GGATTCCACTTTGCCAAGTCC 59.454 52.381 0.00 0.00 41.69 3.85
301 302 1.546029 GGGATTCCACTTTGCCAAGTC 59.454 52.381 4.80 0.00 41.69 3.01
302 303 1.133199 TGGGATTCCACTTTGCCAAGT 60.133 47.619 4.80 0.00 44.72 3.16
303 304 1.631405 TGGGATTCCACTTTGCCAAG 58.369 50.000 4.80 0.00 38.32 3.61
304 305 3.858886 TGGGATTCCACTTTGCCAA 57.141 47.368 4.80 0.00 38.32 4.52
316 317 6.068498 TGGATTAGTTGGGAATAAGTGGGATT 60.068 38.462 0.00 0.00 0.00 3.01
318 319 4.791334 TGGATTAGTTGGGAATAAGTGGGA 59.209 41.667 0.00 0.00 0.00 4.37
321 322 5.755849 AGGTGGATTAGTTGGGAATAAGTG 58.244 41.667 0.00 0.00 0.00 3.16
322 323 7.519347 TTAGGTGGATTAGTTGGGAATAAGT 57.481 36.000 0.00 0.00 0.00 2.24
323 324 8.996651 ATTTAGGTGGATTAGTTGGGAATAAG 57.003 34.615 0.00 0.00 0.00 1.73
325 326 9.777008 AAAATTTAGGTGGATTAGTTGGGAATA 57.223 29.630 0.00 0.00 0.00 1.75
326 327 8.679344 AAAATTTAGGTGGATTAGTTGGGAAT 57.321 30.769 0.00 0.00 0.00 3.01
327 328 9.027202 GTAAAATTTAGGTGGATTAGTTGGGAA 57.973 33.333 0.00 0.00 0.00 3.97
328 329 8.395605 AGTAAAATTTAGGTGGATTAGTTGGGA 58.604 33.333 0.00 0.00 0.00 4.37
348 349 9.103582 TGGGTGATAACTAAGAACCTAGTAAAA 57.896 33.333 0.00 0.00 31.72 1.52
349 350 8.534496 GTGGGTGATAACTAAGAACCTAGTAAA 58.466 37.037 0.00 0.00 31.72 2.01
350 351 7.897565 AGTGGGTGATAACTAAGAACCTAGTAA 59.102 37.037 0.00 0.00 31.72 2.24
351 352 7.416731 AGTGGGTGATAACTAAGAACCTAGTA 58.583 38.462 0.00 0.00 31.72 1.82
352 353 6.262207 AGTGGGTGATAACTAAGAACCTAGT 58.738 40.000 0.00 0.00 33.41 2.57
354 355 8.534496 GTTTAGTGGGTGATAACTAAGAACCTA 58.466 37.037 0.00 0.00 39.40 3.08
355 356 7.237055 AGTTTAGTGGGTGATAACTAAGAACCT 59.763 37.037 0.00 0.00 39.40 3.50
356 357 7.392418 AGTTTAGTGGGTGATAACTAAGAACC 58.608 38.462 0.00 0.00 39.40 3.62
357 358 8.843885 AAGTTTAGTGGGTGATAACTAAGAAC 57.156 34.615 0.00 0.00 39.40 3.01
358 359 9.280174 CAAAGTTTAGTGGGTGATAACTAAGAA 57.720 33.333 0.00 0.00 39.40 2.52
359 360 8.653191 TCAAAGTTTAGTGGGTGATAACTAAGA 58.347 33.333 0.00 0.00 39.40 2.10
360 361 8.842358 TCAAAGTTTAGTGGGTGATAACTAAG 57.158 34.615 0.00 0.00 39.40 2.18
362 363 7.827236 CCATCAAAGTTTAGTGGGTGATAACTA 59.173 37.037 9.53 0.00 0.00 2.24
363 364 6.659242 CCATCAAAGTTTAGTGGGTGATAACT 59.341 38.462 9.53 0.00 0.00 2.24
364 365 6.127730 CCCATCAAAGTTTAGTGGGTGATAAC 60.128 42.308 21.36 0.00 43.61 1.89
367 368 4.344104 CCCATCAAAGTTTAGTGGGTGAT 58.656 43.478 21.36 4.30 43.61 3.06
372 373 6.149474 CACTTAGTCCCATCAAAGTTTAGTGG 59.851 42.308 10.18 10.18 29.93 4.00
373 374 6.149474 CCACTTAGTCCCATCAAAGTTTAGTG 59.851 42.308 0.00 0.00 29.93 2.74
374 375 6.043938 TCCACTTAGTCCCATCAAAGTTTAGT 59.956 38.462 0.00 0.00 29.93 2.24
376 377 6.442541 TCCACTTAGTCCCATCAAAGTTTA 57.557 37.500 0.00 0.00 29.93 2.01
377 378 5.319043 TCCACTTAGTCCCATCAAAGTTT 57.681 39.130 0.00 0.00 29.93 2.66
380 381 5.124457 CACAATCCACTTAGTCCCATCAAAG 59.876 44.000 0.00 0.00 0.00 2.77
381 382 5.009631 CACAATCCACTTAGTCCCATCAAA 58.990 41.667 0.00 0.00 0.00 2.69
384 385 3.054361 ACCACAATCCACTTAGTCCCATC 60.054 47.826 0.00 0.00 0.00 3.51
385 386 2.919602 ACCACAATCCACTTAGTCCCAT 59.080 45.455 0.00 0.00 0.00 4.00
386 387 2.039746 CACCACAATCCACTTAGTCCCA 59.960 50.000 0.00 0.00 0.00 4.37
387 388 2.618045 CCACCACAATCCACTTAGTCCC 60.618 54.545 0.00 0.00 0.00 4.46
388 389 2.618045 CCCACCACAATCCACTTAGTCC 60.618 54.545 0.00 0.00 0.00 3.85
389 390 2.304761 TCCCACCACAATCCACTTAGTC 59.695 50.000 0.00 0.00 0.00 2.59
390 391 2.039879 GTCCCACCACAATCCACTTAGT 59.960 50.000 0.00 0.00 0.00 2.24
392 393 2.058705 TGTCCCACCACAATCCACTTA 58.941 47.619 0.00 0.00 0.00 2.24
393 394 0.850100 TGTCCCACCACAATCCACTT 59.150 50.000 0.00 0.00 0.00 3.16
394 395 0.110486 GTGTCCCACCACAATCCACT 59.890 55.000 0.00 0.00 35.38 4.00
395 396 2.641197 GTGTCCCACCACAATCCAC 58.359 57.895 0.00 0.00 35.38 4.02
407 408 1.299976 GACTGGATGTGGGTGTCCC 59.700 63.158 0.00 0.00 45.71 4.46
409 410 1.299976 GGGACTGGATGTGGGTGTC 59.700 63.158 0.00 0.00 0.00 3.67
410 411 1.463214 TGGGACTGGATGTGGGTGT 60.463 57.895 0.00 0.00 0.00 4.16
411 412 1.002134 GTGGGACTGGATGTGGGTG 60.002 63.158 0.00 0.00 0.00 4.61
414 415 1.300963 CAGGTGGGACTGGATGTGG 59.699 63.158 0.00 0.00 34.84 4.17
415 416 1.377725 GCAGGTGGGACTGGATGTG 60.378 63.158 0.00 0.00 38.90 3.21
416 417 1.845627 CTGCAGGTGGGACTGGATGT 61.846 60.000 5.57 0.00 38.17 3.06
417 418 1.077930 CTGCAGGTGGGACTGGATG 60.078 63.158 5.57 0.00 38.17 3.51
418 419 2.976490 GCTGCAGGTGGGACTGGAT 61.976 63.158 17.12 0.00 38.17 3.41
419 420 3.640407 GCTGCAGGTGGGACTGGA 61.640 66.667 17.12 0.00 38.90 3.86
420 421 4.729918 GGCTGCAGGTGGGACTGG 62.730 72.222 17.12 0.00 38.90 4.00
421 422 3.644606 AGGCTGCAGGTGGGACTG 61.645 66.667 17.12 0.00 41.41 3.51
422 423 3.644606 CAGGCTGCAGGTGGGACT 61.645 66.667 17.12 0.00 0.00 3.85
441 442 3.535561 TCTCAAACAGCTGCCTTATAGC 58.464 45.455 15.27 0.00 41.43 2.97
442 443 5.121811 ACATCTCAAACAGCTGCCTTATAG 58.878 41.667 15.27 8.63 0.00 1.31
443 444 5.102953 ACATCTCAAACAGCTGCCTTATA 57.897 39.130 15.27 0.00 0.00 0.98
446 447 2.283145 ACATCTCAAACAGCTGCCTT 57.717 45.000 15.27 4.52 0.00 4.35
447 448 2.283145 AACATCTCAAACAGCTGCCT 57.717 45.000 15.27 0.00 0.00 4.75
448 449 2.035066 ACAAACATCTCAAACAGCTGCC 59.965 45.455 15.27 0.00 0.00 4.85
449 450 3.360249 ACAAACATCTCAAACAGCTGC 57.640 42.857 15.27 0.00 0.00 5.25
450 451 5.698089 TCTCTACAAACATCTCAAACAGCTG 59.302 40.000 13.48 13.48 0.00 4.24
451 452 5.698545 GTCTCTACAAACATCTCAAACAGCT 59.301 40.000 0.00 0.00 0.00 4.24
453 454 7.664082 ATGTCTCTACAAACATCTCAAACAG 57.336 36.000 0.00 0.00 39.58 3.16
454 455 9.371136 GATATGTCTCTACAAACATCTCAAACA 57.629 33.333 0.00 0.00 39.58 2.83
457 458 9.591792 CAAGATATGTCTCTACAAACATCTCAA 57.408 33.333 0.00 0.00 39.58 3.02
459 460 9.029243 CACAAGATATGTCTCTACAAACATCTC 57.971 37.037 0.00 0.00 41.46 2.75
460 461 7.493971 GCACAAGATATGTCTCTACAAACATCT 59.506 37.037 0.00 0.00 41.46 2.90
462 463 6.540189 GGCACAAGATATGTCTCTACAAACAT 59.460 38.462 0.00 0.00 41.46 2.71
465 466 6.299805 AGGCACAAGATATGTCTCTACAAA 57.700 37.500 0.00 0.00 41.46 2.83
466 467 5.939764 AGGCACAAGATATGTCTCTACAA 57.060 39.130 0.00 0.00 41.46 2.41
467 468 5.939764 AAGGCACAAGATATGTCTCTACA 57.060 39.130 0.00 0.00 41.46 2.74
468 469 8.894768 AAATAAGGCACAAGATATGTCTCTAC 57.105 34.615 0.00 0.00 41.46 2.59
469 470 8.928448 AGAAATAAGGCACAAGATATGTCTCTA 58.072 33.333 0.00 0.00 41.46 2.43
470 471 7.800092 AGAAATAAGGCACAAGATATGTCTCT 58.200 34.615 0.00 0.00 41.46 3.10
473 474 7.659390 AGCTAGAAATAAGGCACAAGATATGTC 59.341 37.037 0.00 0.00 41.46 3.06
474 475 7.512992 AGCTAGAAATAAGGCACAAGATATGT 58.487 34.615 0.00 0.00 45.34 2.29
475 476 7.976135 AGCTAGAAATAAGGCACAAGATATG 57.024 36.000 0.00 0.00 0.00 1.78
479 480 9.899661 TTTATAAGCTAGAAATAAGGCACAAGA 57.100 29.630 0.00 0.00 0.00 3.02
491 492 9.914834 TGAAGGCCTATTTTTATAAGCTAGAAA 57.085 29.630 5.16 0.00 0.00 2.52
493 494 8.714906 AGTGAAGGCCTATTTTTATAAGCTAGA 58.285 33.333 5.16 0.00 0.00 2.43
494 495 8.910351 AGTGAAGGCCTATTTTTATAAGCTAG 57.090 34.615 5.16 0.00 0.00 3.42
495 496 7.656137 CGAGTGAAGGCCTATTTTTATAAGCTA 59.344 37.037 5.16 0.00 0.00 3.32
496 497 6.483640 CGAGTGAAGGCCTATTTTTATAAGCT 59.516 38.462 5.16 0.00 0.00 3.74
497 498 6.293462 CCGAGTGAAGGCCTATTTTTATAAGC 60.293 42.308 5.16 0.00 0.00 3.09
499 500 6.655930 ACCGAGTGAAGGCCTATTTTTATAA 58.344 36.000 5.16 0.00 0.00 0.98
501 502 5.112129 ACCGAGTGAAGGCCTATTTTTAT 57.888 39.130 5.16 0.00 0.00 1.40
502 503 4.563140 ACCGAGTGAAGGCCTATTTTTA 57.437 40.909 5.16 0.00 0.00 1.52
504 505 3.434940 AACCGAGTGAAGGCCTATTTT 57.565 42.857 5.16 0.00 0.00 1.82
506 507 3.009143 AGAAAACCGAGTGAAGGCCTATT 59.991 43.478 5.16 0.00 0.00 1.73
507 508 2.572104 AGAAAACCGAGTGAAGGCCTAT 59.428 45.455 5.16 0.00 0.00 2.57
508 509 1.975680 AGAAAACCGAGTGAAGGCCTA 59.024 47.619 5.16 0.00 0.00 3.93
510 511 2.347731 CTAGAAAACCGAGTGAAGGCC 58.652 52.381 0.00 0.00 0.00 5.19
511 512 1.732809 GCTAGAAAACCGAGTGAAGGC 59.267 52.381 0.00 0.00 0.00 4.35
512 513 1.993370 CGCTAGAAAACCGAGTGAAGG 59.007 52.381 0.00 0.00 30.82 3.46
513 514 2.942710 TCGCTAGAAAACCGAGTGAAG 58.057 47.619 0.00 0.00 34.76 3.02
521 1795 5.103290 TCATTGTTGTTCGCTAGAAAACC 57.897 39.130 0.00 0.00 38.23 3.27
554 1828 4.096681 CCTGGGCCTTCTTCCTTTTTAAT 58.903 43.478 4.53 0.00 0.00 1.40
555 1829 3.506398 CCTGGGCCTTCTTCCTTTTTAA 58.494 45.455 4.53 0.00 0.00 1.52
556 1830 2.821625 GCCTGGGCCTTCTTCCTTTTTA 60.822 50.000 4.53 0.00 34.56 1.52
582 1856 1.603455 CCCAACCCAATGCACGTCT 60.603 57.895 0.00 0.00 0.00 4.18
608 1903 3.073678 TGACCATATGTAATGGCATCGC 58.926 45.455 0.00 0.00 42.82 4.58
609 1904 4.064388 TGTGACCATATGTAATGGCATCG 58.936 43.478 0.00 0.00 42.82 3.84
610 1905 6.039717 AGTTTGTGACCATATGTAATGGCATC 59.960 38.462 0.00 0.00 42.82 3.91
611 1906 5.893255 AGTTTGTGACCATATGTAATGGCAT 59.107 36.000 1.24 0.00 42.82 4.40
612 1907 5.260424 AGTTTGTGACCATATGTAATGGCA 58.740 37.500 1.24 0.00 42.82 4.92
613 1908 5.835113 AGTTTGTGACCATATGTAATGGC 57.165 39.130 1.24 0.00 42.82 4.40
614 1909 7.655732 TCGATAGTTTGTGACCATATGTAATGG 59.344 37.037 1.24 2.46 40.47 3.16
615 1910 8.587952 TCGATAGTTTGTGACCATATGTAATG 57.412 34.615 1.24 0.00 37.40 1.90
616 1911 7.872993 CCTCGATAGTTTGTGACCATATGTAAT 59.127 37.037 1.24 0.00 37.40 1.89
617 1912 7.207383 CCTCGATAGTTTGTGACCATATGTAA 58.793 38.462 1.24 0.00 37.40 2.41
618 1913 6.737622 GCCTCGATAGTTTGTGACCATATGTA 60.738 42.308 1.24 0.00 37.40 2.29
619 1914 5.601662 CCTCGATAGTTTGTGACCATATGT 58.398 41.667 1.24 0.00 37.40 2.29
620 1915 4.449068 GCCTCGATAGTTTGTGACCATATG 59.551 45.833 0.00 0.00 37.40 1.78
621 1916 4.503296 GGCCTCGATAGTTTGTGACCATAT 60.503 45.833 0.00 0.00 37.40 1.78
622 1917 3.181469 GGCCTCGATAGTTTGTGACCATA 60.181 47.826 0.00 0.00 37.40 2.74
623 1918 2.420129 GGCCTCGATAGTTTGTGACCAT 60.420 50.000 0.00 0.00 37.40 3.55
624 1919 1.066430 GGCCTCGATAGTTTGTGACCA 60.066 52.381 0.00 0.00 37.40 4.02
625 1920 1.653151 GGCCTCGATAGTTTGTGACC 58.347 55.000 0.00 0.00 37.40 4.02
626 1921 1.135199 TCGGCCTCGATAGTTTGTGAC 60.135 52.381 0.00 0.00 40.88 3.67
676 1971 1.279840 GCCACACTGTCTGCGTTTC 59.720 57.895 0.00 0.00 0.00 2.78
797 2092 7.845066 ATCTAAATAGAGTTTTTGGTCGTCC 57.155 36.000 0.00 0.00 35.50 4.79
849 2144 1.980052 CCAGGAAGGAGGCGTGTTA 59.020 57.895 0.00 0.00 41.22 2.41
872 2171 0.336392 AGAATTTTGAGGGGGAGCCC 59.664 55.000 0.00 0.00 44.51 5.19
914 2213 2.091665 ACCATGGAATTGGGATGGAGAC 60.092 50.000 21.47 0.00 41.35 3.36
915 2214 2.091720 CACCATGGAATTGGGATGGAGA 60.092 50.000 21.47 0.00 41.35 3.71
916 2215 2.313317 CACCATGGAATTGGGATGGAG 58.687 52.381 21.47 3.14 41.35 3.86
917 2216 1.688942 GCACCATGGAATTGGGATGGA 60.689 52.381 21.47 0.00 41.35 3.41
918 2217 0.754472 GCACCATGGAATTGGGATGG 59.246 55.000 21.47 0.00 41.35 3.51
921 2222 2.250921 ATTGCACCATGGAATTGGGA 57.749 45.000 21.47 0.29 34.69 4.37
1137 2648 3.536917 CCTACCATGGCGAGCCGA 61.537 66.667 13.04 0.00 39.42 5.54
1153 2664 3.462678 GGACGGAGGACAGGAGCC 61.463 72.222 0.00 0.00 0.00 4.70
1187 2702 6.790232 ACAAGAAAAGGAAACCAATCAAGA 57.210 33.333 0.00 0.00 0.00 3.02
1270 2785 2.876368 GATCCGGGTGCCACTTCTGG 62.876 65.000 0.00 0.00 41.13 3.86
1378 2893 1.831652 CGGGCTAGGGCTAATGGGAG 61.832 65.000 0.00 0.00 38.73 4.30
1395 2910 2.399611 GATCAAAACCTCGCGCGG 59.600 61.111 31.69 20.19 0.00 6.46
1404 2919 4.320953 GCCGACAAAGAATTCGATCAAAAC 59.679 41.667 0.00 0.00 37.43 2.43
1472 3000 1.281925 GGAGGGGATCAAAGAGGCCA 61.282 60.000 5.01 0.00 0.00 5.36
1491 3019 2.428569 CACCTGGTCGTCGTCGTG 60.429 66.667 0.00 0.00 38.33 4.35
1629 3167 5.064579 CCGTCCAAAACAAGAGCAAAATTTT 59.935 36.000 0.00 0.00 0.00 1.82
1644 3182 1.203001 AGAAATCCTGGCCGTCCAAAA 60.203 47.619 0.00 0.00 42.91 2.44
1687 3225 4.406648 TTTCACGCTATCCATCATCACT 57.593 40.909 0.00 0.00 0.00 3.41
1743 3281 4.478699 TCACGATTAAACTAGTGTCACGG 58.521 43.478 0.00 0.00 36.16 4.94
1744 3282 6.627690 AATCACGATTAAACTAGTGTCACG 57.372 37.500 0.00 0.53 36.16 4.35
1751 3289 9.798994 ACAGGTACTTAATCACGATTAAACTAG 57.201 33.333 12.11 4.75 41.22 2.57
1754 3292 8.928733 TCAACAGGTACTTAATCACGATTAAAC 58.071 33.333 12.11 8.88 41.22 2.01
1756 3294 8.928733 GTTCAACAGGTACTTAATCACGATTAA 58.071 33.333 10.87 10.87 39.99 1.40
1769 3322 7.370383 CAATAGCAAATTGTTCAACAGGTACT 58.630 34.615 0.00 0.00 43.88 2.73
1770 3323 6.089417 GCAATAGCAAATTGTTCAACAGGTAC 59.911 38.462 11.92 0.00 41.58 3.34
1771 3324 6.155827 GCAATAGCAAATTGTTCAACAGGTA 58.844 36.000 11.92 0.00 41.58 3.08
1772 3325 4.990426 GCAATAGCAAATTGTTCAACAGGT 59.010 37.500 11.92 0.00 41.58 4.00
1842 3396 1.749063 TCGCCGTTGACTATGTCATCT 59.251 47.619 1.05 0.00 42.40 2.90
2114 3671 1.422402 AGTTGTAACCACCCCGACAAT 59.578 47.619 0.00 0.00 34.54 2.71
2258 3815 3.196039 TCGAAATGTCCGGAAAGGTGATA 59.804 43.478 5.23 0.00 41.99 2.15
2263 3820 1.940613 GGATCGAAATGTCCGGAAAGG 59.059 52.381 5.23 0.00 42.97 3.11
2369 3926 1.750193 AAAGACCACACACACACAGG 58.250 50.000 0.00 0.00 0.00 4.00
2370 3927 3.500982 CAAAAAGACCACACACACACAG 58.499 45.455 0.00 0.00 0.00 3.66
2407 3977 0.843984 AGGTTTGTGCCTGTGGTACT 59.156 50.000 6.41 0.00 39.07 2.73
2408 3978 1.235724 GAGGTTTGTGCCTGTGGTAC 58.764 55.000 0.00 0.00 39.34 3.34
2425 3995 2.290896 TGGTAGCAAAGACAATGGGGAG 60.291 50.000 0.00 0.00 0.00 4.30
2439 4009 2.350738 GGCAAAGCCTTTGGTAGCA 58.649 52.632 18.29 0.00 46.69 3.49
2449 4019 2.872842 TACTACCGAAGTTGGCAAAGCC 60.873 50.000 0.00 0.00 43.73 4.35
2458 4028 4.281688 TGGTTACAGCTTACTACCGAAGTT 59.718 41.667 0.00 0.00 39.80 2.66
2470 4046 5.690464 AGAATCATCTCTGGTTACAGCTT 57.310 39.130 0.00 0.00 44.54 3.74
2522 4098 3.499737 GGCATTCGAGCACCACGG 61.500 66.667 0.00 0.00 35.83 4.94
2534 4110 2.240160 TCCGGTACAATACAAGGGCATT 59.760 45.455 0.00 0.00 0.00 3.56
2652 4236 2.622436 CCATCCAGAAGAGAAACGTCC 58.378 52.381 0.00 0.00 0.00 4.79
2742 4326 1.603842 TGGAGCATCATCCAGCGTT 59.396 52.632 0.00 0.00 44.56 4.84
2971 4562 4.657814 ATAGGTTGTCCATTGAGGTTGT 57.342 40.909 0.00 0.00 39.02 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.