AutoCloner

Multiple sequence alignment - TraesCS4B01G187400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G187400	chr4B	100.000	3101	0	0	1	3101	407809508	407806408	0.000000e+00	5727
1	TraesCS4B01G187400	chr4B	76.024	659	126	26	1434	2077	17083661	17084302	2.320000e-81	313
2	TraesCS4B01G187400	chr4B	73.182	660	156	19	1424	2075	267670065	267670711	5.210000e-53	219
3	TraesCS4B01G187400	chr4D	94.990	2595	58	27	543	3101	328186171	328183613	0.000000e+00	4006
4	TraesCS4B01G187400	chr4D	76.524	656	128	23	1444	2088	9206646	9207286	4.960000e-88	335
5	TraesCS4B01G187400	chr4D	90.323	186	17	1	43	227	328186838	328186653	3.090000e-60	243
6	TraesCS4B01G187400	chr4D	73.476	656	161	11	1424	2075	246517872	246517226	5.170000e-58	235
7	TraesCS4B01G187400	chr4A	93.007	2617	86	40	543	3101	142343912	142346489	0.000000e+00	3729
8	TraesCS4B01G187400	chr4A	75.994	629	126	20	1450	2067	594270255	594269641	5.030000e-78	302
9	TraesCS4B01G187400	chr4A	90.419	167	7	4	336	493	142343530	142343696	8.710000e-51	211
10	TraesCS4B01G187400	chr5D	97.833	646	14	0	1045	1690	358593094	358592449	0.000000e+00	1116
11	TraesCS4B01G187400	chr5D	93.548	186	7	1	561	741	358593287	358593102	3.940000e-69	272
12	TraesCS4B01G187400	chr7A	74.829	878	166	44	1229	2071	159558267	159557410	2.290000e-91	346
13	TraesCS4B01G187400	chr7D	77.456	621	104	27	1445	2044	159063111	159063716	3.830000e-89	339
14	TraesCS4B01G187400	chr2D	74.742	871	163	41	1240	2071	83859537	83860389	1.380000e-88	337
15	TraesCS4B01G187400	chr2A	76.093	686	119	33	1419	2071	84646551	84647224	1.790000e-82	316
16	TraesCS4B01G187400	chr2B	75.779	706	121	37	1415	2083	135775800	135776492	8.350000e-81	311
17	TraesCS4B01G187400	chr2B	75.255	687	134	29	1423	2086	552340729	552340056	8.410000e-76	294

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G187400	chr4B	407806408	407809508	3100	True	5727.0	5727	100.0000	1	3101	1	chr4B.!!$R1	3100
1	TraesCS4B01G187400	chr4B	17083661	17084302	641	False	313.0	313	76.0240	1434	2077	1	chr4B.!!$F1	643
2	TraesCS4B01G187400	chr4B	267670065	267670711	646	False	219.0	219	73.1820	1424	2075	1	chr4B.!!$F2	651
3	TraesCS4B01G187400	chr4D	328183613	328186838	3225	True	2124.5	4006	92.6565	43	3101	2	chr4D.!!$R2	3058
4	TraesCS4B01G187400	chr4D	9206646	9207286	640	False	335.0	335	76.5240	1444	2088	1	chr4D.!!$F1	644
5	TraesCS4B01G187400	chr4D	246517226	246517872	646	True	235.0	235	73.4760	1424	2075	1	chr4D.!!$R1	651
6	TraesCS4B01G187400	chr4A	142343530	142346489	2959	False	1970.0	3729	91.7130	336	3101	2	chr4A.!!$F1	2765
7	TraesCS4B01G187400	chr4A	594269641	594270255	614	True	302.0	302	75.9940	1450	2067	1	chr4A.!!$R1	617
8	TraesCS4B01G187400	chr5D	358592449	358593287	838	True	694.0	1116	95.6905	561	1690	2	chr5D.!!$R1	1129
9	TraesCS4B01G187400	chr7A	159557410	159558267	857	True	346.0	346	74.8290	1229	2071	1	chr7A.!!$R1	842
10	TraesCS4B01G187400	chr7D	159063111	159063716	605	False	339.0	339	77.4560	1445	2044	1	chr7D.!!$F1	599
11	TraesCS4B01G187400	chr2D	83859537	83860389	852	False	337.0	337	74.7420	1240	2071	1	chr2D.!!$F1	831
12	TraesCS4B01G187400	chr2A	84646551	84647224	673	False	316.0	316	76.0930	1419	2071	1	chr2A.!!$F1	652
13	TraesCS4B01G187400	chr2B	135775800	135776492	692	False	311.0	311	75.7790	1415	2083	1	chr2B.!!$F1	668
14	TraesCS4B01G187400	chr2B	552340056	552340729	673	True	294.0	294	75.2550	1423	2086	1	chr2B.!!$R1	663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
125	127	0.114168	TGCCCACCACCTTAGCAAAT	59.886	50.0	0.0	0.0	0.0	2.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2268	2679	6.780706	ACAATCTAGGAGTAACACAAAACG	57.219	37.5	0.0	0.0	0.0	3.6	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	7.672983	ACAACTTCAAAGATATATATGGCGG	57.327	36.000	0.00	0.00	0.00	6.13
26	27	6.149474	ACAACTTCAAAGATATATATGGCGGC	59.851	38.462	0.00	0.00	0.00	6.53
27	28	6.054860	ACTTCAAAGATATATATGGCGGCT	57.945	37.500	11.43	0.00	0.00	5.52
28	29	6.476378	ACTTCAAAGATATATATGGCGGCTT	58.524	36.000	11.43	6.56	0.00	4.35
29	30	6.942576	ACTTCAAAGATATATATGGCGGCTTT	59.057	34.615	11.43	0.73	0.00	3.51
30	31	7.448469	ACTTCAAAGATATATATGGCGGCTTTT	59.552	33.333	11.43	1.35	0.00	2.27
31	32	7.759489	TCAAAGATATATATGGCGGCTTTTT	57.241	32.000	11.43	0.00	0.00	1.94
79	80	5.672321	GCGGCTTAAACTCAAGATTTCAGAG	60.672	44.000	0.00	0.00	35.56	3.35
87	89	1.563410	CAAGATTTCAGAGCCCCTCCT	59.437	52.381	0.00	0.00	0.00	3.69
96	98	0.985490	GAGCCCCTCCTTCAGTCCAT	60.985	60.000	0.00	0.00	0.00	3.41
97	99	0.343372	AGCCCCTCCTTCAGTCCATA	59.657	55.000	0.00	0.00	0.00	2.74
103	105	2.630580	CCTCCTTCAGTCCATAGGCTAC	59.369	54.545	0.00	0.00	0.00	3.58
125	127	0.114168	TGCCCACCACCTTAGCAAAT	59.886	50.000	0.00	0.00	0.00	2.32
164	166	1.594517	CGTCGTGCACATTGTTCATG	58.405	50.000	18.64	2.65	39.07	3.07
166	168	2.156697	CGTCGTGCACATTGTTCATGTA	59.843	45.455	18.64	0.00	45.06	2.29
176	178	7.660617	TGCACATTGTTCATGTAATTTTTGGAT	59.339	29.630	0.00	0.00	45.06	3.41
195	197	5.051816	TGGATAATAAAAAGGGAGCGTACG	58.948	41.667	11.84	11.84	0.00	3.67
202	204	2.126189	GGGAGCGTACGTGGTGTC	60.126	66.667	17.90	6.20	0.00	3.67
204	206	2.253452	GAGCGTACGTGGTGTCGT	59.747	61.111	17.90	0.00	45.97	4.34
214	216	0.320374	GTGGTGTCGTCCAAGATCCA	59.680	55.000	0.00	0.00	39.34	3.41
234	236	2.038837	GCAACGGCAGGAGGGTTAC	61.039	63.158	0.00	0.00	40.72	2.50
235	237	1.376812	CAACGGCAGGAGGGTTACC	60.377	63.158	0.00	0.00	0.00	2.85
245	247	4.783621	GGGTTACCCCCGGCGAAC	62.784	72.222	9.81	3.83	45.80	3.95
248	250	3.624872	TTACCCCCGGCGAACGTT	61.625	61.111	9.30	0.00	42.24	3.99
249	251	3.588057	TTACCCCCGGCGAACGTTC	62.588	63.158	18.47	18.47	42.24	3.95
264	266	6.544620	CGAACGTTCGCTAGATAACTTTAA	57.455	37.500	34.54	0.00	44.26	1.52
265	267	6.970761	CGAACGTTCGCTAGATAACTTTAAA	58.029	36.000	34.54	0.00	44.26	1.52
267	269	8.736742	CGAACGTTCGCTAGATAACTTTAAATA	58.263	33.333	34.54	0.00	44.26	1.40
268	270	9.826805	GAACGTTCGCTAGATAACTTTAAATAC	57.173	33.333	13.36	0.00	0.00	1.89
269	271	8.345224	ACGTTCGCTAGATAACTTTAAATACC	57.655	34.615	0.00	0.00	0.00	2.73
270	272	7.975616	ACGTTCGCTAGATAACTTTAAATACCA	59.024	33.333	0.00	0.00	0.00	3.25
318	320	7.671495	TGCGATGTATATATCTGCAAAATGT	57.329	32.000	18.89	0.00	35.39	2.71
319	321	8.098220	TGCGATGTATATATCTGCAAAATGTT	57.902	30.769	18.89	0.00	35.39	2.71
365	513	1.860326	GCAAAACAGCGCAGAAATGTT	59.140	42.857	11.47	8.33	38.76	2.71
388	536	7.171167	TGTTGCATGAAATACAAAATCTGGTTG	59.829	33.333	0.00	0.00	30.01	3.77
430	581	1.072331	ACAAGTGGGAGCAGTGGTAAG	59.928	52.381	0.00	0.00	0.00	2.34
453	604	3.111853	TGAGCAAAGTGATTCGTGAGT	57.888	42.857	0.00	0.00	0.00	3.41
519	808	2.744768	CGCCGCTCCTTCTCAAAGC	61.745	63.158	0.00	0.00	0.00	3.51
939	1294	4.717313	GCCGTCTTGGGGTGGTCC	62.717	72.222	0.00	0.00	38.63	4.46
941	1296	2.824880	CCGTCTTGGGGTGGTCCAA	61.825	63.158	0.00	0.00	43.82	3.53
2277	2688	8.024285	TCTTCTGTTGAATTAAACGTTTTGTGT	58.976	29.630	20.19	2.35	32.47	3.72
2278	2689	8.522178	TTCTGTTGAATTAAACGTTTTGTGTT	57.478	26.923	20.19	8.96	32.47	3.32
2293	2704	7.069569	CGTTTTGTGTTACTCCTAGATTGTTG	58.930	38.462	0.00	0.00	0.00	3.33
2304	2715	4.595781	TCCTAGATTGTTGGTGTTGGTAGT	59.404	41.667	0.00	0.00	0.00	2.73
2306	2717	4.431416	AGATTGTTGGTGTTGGTAGTGA	57.569	40.909	0.00	0.00	0.00	3.41
2431	2844	7.490657	TCATGGTGATGATGATGATGATAGA	57.509	36.000	0.00	0.00	33.40	1.98
2432	2845	8.090788	TCATGGTGATGATGATGATGATAGAT	57.909	34.615	0.00	0.00	33.40	1.98
2502	2923	3.551485	GCAAGCATTTGTTGTTCGTCTTT	59.449	39.130	0.00	0.00	36.65	2.52
2519	2940	5.355910	TCGTCTTTCCCTTAAATGGCAATAC	59.644	40.000	0.00	0.00	0.00	1.89
2559	2986	1.202758	TGGTGGCTTGGTCTGTTGTAG	60.203	52.381	0.00	0.00	0.00	2.74
2560	2987	1.202770	GGTGGCTTGGTCTGTTGTAGT	60.203	52.381	0.00	0.00	0.00	2.73
2561	2988	2.038033	GGTGGCTTGGTCTGTTGTAGTA	59.962	50.000	0.00	0.00	0.00	1.82
2567	2994	4.021719	GCTTGGTCTGTTGTAGTACTGGTA	60.022	45.833	5.39	0.00	0.00	3.25
2623	3053	1.216064	CACATCCATCCCCCTGAAGA	58.784	55.000	0.00	0.00	0.00	2.87
2644	3074	1.210931	CAGCCAGTCCAATGCAACG	59.789	57.895	0.00	0.00	0.00	4.10
2661	3091	2.440247	GCCTGCACCGGCCTTAAT	60.440	61.111	0.00	0.00	44.41	1.40
2722	3159	0.466189	CCGGTTCCTTGGGATGGATG	60.466	60.000	0.00	0.00	33.09	3.51
2723	3160	0.466189	CGGTTCCTTGGGATGGATGG	60.466	60.000	0.00	0.00	33.09	3.51
2724	3161	0.926293	GGTTCCTTGGGATGGATGGA	59.074	55.000	0.00	0.00	33.09	3.41
2725	3162	1.500736	GGTTCCTTGGGATGGATGGAT	59.499	52.381	0.00	0.00	33.09	3.41
2732	3169	2.420705	TGGGATGGATGGATCATGTCA	58.579	47.619	0.00	0.00	0.00	3.58
2738	3175	5.773680	GGATGGATGGATCATGTCAAAATCT	59.226	40.000	0.00	0.00	0.00	2.40
2788	3226	0.882927	TTTGTGGCTCGTGCACTACC	60.883	55.000	16.19	13.49	41.91	3.18
2789	3227	2.034048	TTGTGGCTCGTGCACTACCA	62.034	55.000	16.19	15.97	41.91	3.25
2790	3228	1.301401	GTGGCTCGTGCACTACCAA	60.301	57.895	19.92	6.01	41.91	3.67
3093	3554	3.914426	TTATTGTGCTCTTCCTCTCCC	57.086	47.619	0.00	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	7.308589	GCCGCCATATATATCTTTGAAGTTGTT	60.309	37.037	0.00	0.00	0.00	2.83
1	2	6.149474	GCCGCCATATATATCTTTGAAGTTGT	59.851	38.462	0.00	0.00	0.00	3.32
2	3	6.372659	AGCCGCCATATATATCTTTGAAGTTG	59.627	38.462	0.00	0.00	0.00	3.16
3	4	6.476378	AGCCGCCATATATATCTTTGAAGTT	58.524	36.000	0.00	0.00	0.00	2.66
4	5	6.054860	AGCCGCCATATATATCTTTGAAGT	57.945	37.500	0.00	0.00	0.00	3.01
5	6	6.992063	AAGCCGCCATATATATCTTTGAAG	57.008	37.500	0.00	0.00	0.00	3.02
6	7	7.759489	AAAAGCCGCCATATATATCTTTGAA	57.241	32.000	6.97	0.00	0.00	2.69
7	8	7.759489	AAAAAGCCGCCATATATATCTTTGA	57.241	32.000	6.97	0.00	0.00	2.69
30	31	7.524698	GCCATATATATCTTTTCCCCGCAAAAA	60.525	37.037	0.00	0.00	0.00	1.94
31	32	6.071616	GCCATATATATCTTTTCCCCGCAAAA	60.072	38.462	0.00	0.00	0.00	2.44
32	33	5.417580	GCCATATATATCTTTTCCCCGCAAA	59.582	40.000	0.00	0.00	0.00	3.68
33	34	4.947388	GCCATATATATCTTTTCCCCGCAA	59.053	41.667	0.00	0.00	0.00	4.85
34	35	4.523083	GCCATATATATCTTTTCCCCGCA	58.477	43.478	0.00	0.00	0.00	5.69
35	36	3.560068	CGCCATATATATCTTTTCCCCGC	59.440	47.826	0.00	0.00	0.00	6.13
36	37	4.127171	CCGCCATATATATCTTTTCCCCG	58.873	47.826	0.00	0.00	0.00	5.73
37	38	3.883489	GCCGCCATATATATCTTTTCCCC	59.117	47.826	0.00	0.00	0.00	4.81
38	39	4.781934	AGCCGCCATATATATCTTTTCCC	58.218	43.478	0.00	0.00	0.00	3.97
39	40	7.859325	TTAAGCCGCCATATATATCTTTTCC	57.141	36.000	0.00	0.00	0.00	3.13
40	41	8.947115	AGTTTAAGCCGCCATATATATCTTTTC	58.053	33.333	0.00	0.00	0.00	2.29
41	42	8.863872	AGTTTAAGCCGCCATATATATCTTTT	57.136	30.769	0.00	0.00	0.00	2.27
54	55	3.190535	TGAAATCTTGAGTTTAAGCCGCC	59.809	43.478	0.00	0.00	0.00	6.13
79	80	0.761802	CTATGGACTGAAGGAGGGGC	59.238	60.000	0.00	0.00	0.00	5.80
87	89	1.754803	CACGGTAGCCTATGGACTGAA	59.245	52.381	0.00	0.00	0.00	3.02
103	105	2.046314	CTAAGGTGGTGGGCACGG	60.046	66.667	0.00	0.00	0.00	4.94
111	113	2.632512	CCCAACAATTTGCTAAGGTGGT	59.367	45.455	4.08	0.00	0.00	4.16
166	168	8.318412	ACGCTCCCTTTTTATTATCCAAAAATT	58.682	29.630	0.00	0.00	35.09	1.82
176	178	4.183101	CCACGTACGCTCCCTTTTTATTA	58.817	43.478	16.72	0.00	0.00	0.98
186	188	2.503375	CGACACCACGTACGCTCC	60.503	66.667	16.72	0.00	0.00	4.70
195	197	0.320374	TGGATCTTGGACGACACCAC	59.680	55.000	0.00	0.00	39.85	4.16
202	204	0.374758	CGTTGCATGGATCTTGGACG	59.625	55.000	0.00	0.00	0.00	4.79
204	206	1.031571	GCCGTTGCATGGATCTTGGA	61.032	55.000	9.57	0.00	37.47	3.53
231	233	3.588057	GAACGTTCGCCGGGGGTAA	62.588	63.158	19.63	3.32	42.24	2.85
232	234	4.067913	GAACGTTCGCCGGGGGTA	62.068	66.667	19.63	4.32	42.24	3.69
244	246	7.975616	TGGTATTTAAAGTTATCTAGCGAACGT	59.024	33.333	0.00	0.00	0.00	3.99
245	247	8.343974	TGGTATTTAAAGTTATCTAGCGAACG	57.656	34.615	0.00	0.00	0.00	3.95
292	294	9.382275	ACATTTTGCAGATATATACATCGCATA	57.618	29.630	10.02	4.85	35.74	3.14
304	306	9.846248	GTAGTCTTTGAAACATTTTGCAGATAT	57.154	29.630	0.00	0.00	0.00	1.63
306	308	7.715657	TGTAGTCTTTGAAACATTTTGCAGAT	58.284	30.769	0.00	0.00	0.00	2.90
308	310	7.935338	ATGTAGTCTTTGAAACATTTTGCAG	57.065	32.000	0.00	0.00	0.00	4.41
309	311	9.979578	AATATGTAGTCTTTGAAACATTTTGCA	57.020	25.926	0.00	0.00	34.54	4.08
365	513	6.164876	CCAACCAGATTTTGTATTTCATGCA	58.835	36.000	0.00	0.00	0.00	3.96
430	581	4.153117	ACTCACGAATCACTTTGCTCAATC	59.847	41.667	0.00	0.00	0.00	2.67
469	620	1.739562	GGACAAGAGGCAGCTCGTG	60.740	63.158	4.78	4.78	38.48	4.35
482	639	0.252284	GTGGGAGGAGGAGAGGACAA	60.252	60.000	0.00	0.00	0.00	3.18
483	640	1.388531	GTGGGAGGAGGAGAGGACA	59.611	63.158	0.00	0.00	0.00	4.02
519	808	4.468689	GCCGTCTTTCCCTCCCGG	62.469	72.222	0.00	0.00	41.50	5.73
527	816	3.479269	CTCGCCGTGCCGTCTTTC	61.479	66.667	0.00	0.00	0.00	2.62
680	1015	1.840635	AGTGGGGTTGAGAATAGGAGC	59.159	52.381	0.00	0.00	0.00	4.70
2268	2679	6.780706	ACAATCTAGGAGTAACACAAAACG	57.219	37.500	0.00	0.00	0.00	3.60
2277	2688	5.072600	ACCAACACCAACAATCTAGGAGTAA	59.927	40.000	0.00	0.00	0.00	2.24
2278	2689	4.595781	ACCAACACCAACAATCTAGGAGTA	59.404	41.667	0.00	0.00	0.00	2.59
2293	2704	3.740115	ACAACAGATCACTACCAACACC	58.260	45.455	0.00	0.00	0.00	4.16
2304	2715	6.718912	TCAAAAATATGTGGGACAACAGATCA	59.281	34.615	0.00	0.00	44.16	2.92
2306	2717	7.147846	GGATCAAAAATATGTGGGACAACAGAT	60.148	37.037	0.00	0.00	44.16	2.90
2502	2923	7.072454	AGTGAGATAGTATTGCCATTTAAGGGA	59.928	37.037	0.00	0.00	0.00	4.20
2519	2940	4.081752	ACCAAACAGCAGAGAGTGAGATAG	60.082	45.833	0.00	0.00	0.00	2.08
2559	2986	2.334838	CGTTTGCCAGAGTACCAGTAC	58.665	52.381	0.00	0.00	36.35	2.73
2560	2987	1.274167	CCGTTTGCCAGAGTACCAGTA	59.726	52.381	0.00	0.00	0.00	2.74
2561	2988	0.034896	CCGTTTGCCAGAGTACCAGT	59.965	55.000	0.00	0.00	0.00	4.00
2567	2994	2.594592	GCCACCGTTTGCCAGAGT	60.595	61.111	0.00	0.00	0.00	3.24
2589	3019	4.674475	TGGATGTGCGAATTGAATTGATG	58.326	39.130	0.00	0.00	0.00	3.07
2623	3053	0.111061	TTGCATTGGACTGGCTGACT	59.889	50.000	0.00	0.00	0.00	3.41
2631	3061	3.672293	CAGGCGTTGCATTGGACT	58.328	55.556	0.00	0.00	0.00	3.85
2652	3082	3.113745	CCAGCAGCATTAAGGCCG	58.886	61.111	8.77	0.00	0.00	6.13
2653	3083	2.810403	GCCAGCAGCATTAAGGCC	59.190	61.111	8.77	0.00	42.97	5.19
2722	3159	3.949754	TGCCAGAGATTTTGACATGATCC	59.050	43.478	0.00	0.00	0.00	3.36
2723	3160	4.880120	TCTGCCAGAGATTTTGACATGATC	59.120	41.667	0.00	0.00	0.00	2.92
2724	3161	4.639310	GTCTGCCAGAGATTTTGACATGAT	59.361	41.667	0.00	0.00	31.63	2.45
2725	3162	4.005650	GTCTGCCAGAGATTTTGACATGA	58.994	43.478	0.00	0.00	31.63	3.07
2732	3169	4.298103	ACTCATGTCTGCCAGAGATTTT	57.702	40.909	0.84	0.00	31.63	1.82
2738	3175	3.306989	CCAAGTTACTCATGTCTGCCAGA	60.307	47.826	0.00	0.00	0.00	3.86
2788	3226	1.102154	TGGTTGTTGGTGTCAGCTTG	58.898	50.000	3.30	0.00	0.00	4.01
2789	3227	2.071778	ATGGTTGTTGGTGTCAGCTT	57.928	45.000	3.30	0.00	0.00	3.74
2790	3228	2.071778	AATGGTTGTTGGTGTCAGCT	57.928	45.000	3.30	0.00	0.00	4.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.