Multiple sequence alignment - TraesCS4B01G185600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G185600 chr4B 100.000 4712 0 0 1 4712 405051735 405056446 0.000000e+00 8702.0
1 TraesCS4B01G185600 chr4B 94.643 56 3 0 4117 4172 228589598 228589653 2.340000e-13 87.9
2 TraesCS4B01G185600 chr4D 92.639 3464 135 53 332 3741 324892763 324896160 0.000000e+00 4874.0
3 TraesCS4B01G185600 chr4D 88.166 507 17 16 4212 4710 324896438 324896909 8.850000e-157 564.0
4 TraesCS4B01G185600 chr4D 92.933 283 13 3 1 276 324892339 324892621 5.680000e-109 405.0
5 TraesCS4B01G185600 chr4D 92.982 57 4 0 3781 3837 324896386 324896442 3.020000e-12 84.2
6 TraesCS4B01G185600 chr4A 92.481 2926 168 36 845 3748 146728870 146725975 0.000000e+00 4137.0
7 TraesCS4B01G185600 chr4A 90.522 517 15 15 4218 4710 146725928 146725422 0.000000e+00 652.0
8 TraesCS4B01G185600 chr4A 87.147 319 25 8 473 786 146729412 146729105 9.700000e-92 348.0
9 TraesCS4B01G185600 chr4A 79.787 282 33 8 1 265 146729985 146729711 2.900000e-42 183.0
10 TraesCS4B01G185600 chr4A 96.364 55 2 0 4118 4172 88436174 88436228 1.810000e-14 91.6
11 TraesCS4B01G185600 chr4A 83.117 77 3 4 3755 3831 146725997 146725931 1.420000e-05 62.1
12 TraesCS4B01G185600 chr4A 100.000 28 0 0 778 805 146728902 146728875 9.000000e-03 52.8
13 TraesCS4B01G185600 chr2D 79.712 1040 189 19 2207 3232 44898395 44897364 0.000000e+00 732.0
14 TraesCS4B01G185600 chr2A 79.344 1036 194 18 2207 3229 48659368 48660396 0.000000e+00 710.0
15 TraesCS4B01G185600 chr2B 79.171 1037 200 15 2207 3232 71738255 71737224 0.000000e+00 704.0
16 TraesCS4B01G185600 chr2B 95.652 184 6 2 3943 4126 184781937 184781756 1.280000e-75 294.0
17 TraesCS4B01G185600 chr2B 88.393 112 11 2 3833 3943 704577600 704577490 2.960000e-27 134.0
18 TraesCS4B01G185600 chr2B 95.000 60 2 1 4113 4172 64861506 64861448 5.020000e-15 93.5
19 TraesCS4B01G185600 chr5B 95.699 186 6 1 3933 4118 665001684 665001867 9.910000e-77 298.0
20 TraesCS4B01G185600 chr5B 94.359 195 8 3 3935 4127 363665483 363665290 3.570000e-76 296.0
21 TraesCS4B01G185600 chr5B 94.709 189 10 0 3934 4122 346616155 346616343 1.280000e-75 294.0
22 TraesCS4B01G185600 chr5B 93.651 189 10 2 3936 4123 589201024 589201211 9.980000e-72 281.0
23 TraesCS4B01G185600 chr5B 91.071 112 8 2 3833 3943 107718769 107718659 2.940000e-32 150.0
24 TraesCS4B01G185600 chr5B 90.991 111 8 2 3834 3943 388353617 388353508 1.060000e-31 148.0
25 TraesCS4B01G185600 chr5B 89.381 113 10 2 3831 3943 338636659 338636769 1.770000e-29 141.0
26 TraesCS4B01G185600 chr5B 88.793 116 9 3 3828 3943 651231263 651231152 6.360000e-29 139.0
27 TraesCS4B01G185600 chr5B 94.643 56 3 0 4117 4172 107718667 107718612 2.340000e-13 87.9
28 TraesCS4B01G185600 chr6B 96.154 182 5 2 3937 4117 162867597 162867777 3.570000e-76 296.0
29 TraesCS4B01G185600 chr6B 94.643 56 3 0 4117 4172 468028721 468028666 2.340000e-13 87.9
30 TraesCS4B01G185600 chr7B 94.709 189 8 2 3929 4116 716683392 716683205 4.610000e-75 292.0
31 TraesCS4B01G185600 chr7B 93.367 196 12 1 3937 4132 727383794 727383600 5.970000e-74 289.0
32 TraesCS4B01G185600 chr7B 87.097 124 12 4 3834 3956 365780021 365779901 2.290000e-28 137.0
33 TraesCS4B01G185600 chr7B 94.643 56 3 0 4117 4172 574168645 574168700 2.340000e-13 87.9
34 TraesCS4B01G185600 chr3B 94.681 188 10 0 3938 4125 819814906 819815093 4.610000e-75 292.0
35 TraesCS4B01G185600 chr3B 92.105 114 7 2 3831 3943 527660278 527660390 4.880000e-35 159.0
36 TraesCS4B01G185600 chr3B 94.643 56 3 0 4117 4172 440766506 440766561 2.340000e-13 87.9
37 TraesCS4B01G185600 chr6A 95.109 184 8 1 3943 4126 586033065 586032883 5.970000e-74 289.0
38 TraesCS4B01G185600 chr1B 92.929 198 12 2 3927 4124 61612230 61612035 2.150000e-73 287.0
39 TraesCS4B01G185600 chr1B 93.717 191 12 0 3934 4124 568324927 568324737 2.150000e-73 287.0
40 TraesCS4B01G185600 chr1B 93.229 192 12 1 3935 4126 25900476 25900666 9.980000e-72 281.0
41 TraesCS4B01G185600 chr1B 88.991 109 10 2 3834 3941 323620272 323620379 2.960000e-27 134.0
42 TraesCS4B01G185600 chr1B 87.500 64 8 0 4158 4221 593527782 593527719 1.820000e-09 75.0
43 TraesCS4B01G185600 chr7A 88.496 113 10 3 3830 3941 202996975 202997085 2.960000e-27 134.0
44 TraesCS4B01G185600 chr7D 93.333 60 3 1 4113 4172 10624173 10624231 2.340000e-13 87.9
45 TraesCS4B01G185600 chr7D 93.333 60 3 1 4113 4172 107193236 107193294 2.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G185600 chr4B 405051735 405056446 4711 False 8702.000000 8702 100.000000 1 4712 1 chr4B.!!$F2 4711
1 TraesCS4B01G185600 chr4D 324892339 324896909 4570 False 1481.800000 4874 91.680000 1 4710 4 chr4D.!!$F1 4709
2 TraesCS4B01G185600 chr4A 146725422 146729985 4563 True 905.816667 4137 88.842333 1 4710 6 chr4A.!!$R1 4709
3 TraesCS4B01G185600 chr2D 44897364 44898395 1031 True 732.000000 732 79.712000 2207 3232 1 chr2D.!!$R1 1025
4 TraesCS4B01G185600 chr2A 48659368 48660396 1028 False 710.000000 710 79.344000 2207 3229 1 chr2A.!!$F1 1022
5 TraesCS4B01G185600 chr2B 71737224 71738255 1031 True 704.000000 704 79.171000 2207 3232 1 chr2B.!!$R2 1025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 1327 0.185901 CTCCTCTCCCCTCCTCTCTG 59.814 65.000 0.0 0.0 0.00 3.35 F
1052 1554 0.032217 CTCCTCTCTCCTCCTGCCTT 60.032 60.000 0.0 0.0 0.00 4.35 F
1277 1783 0.032540 GTTCTTGCCTTGCCTGGTTG 59.967 55.000 0.0 0.0 0.00 3.77 F
2028 2543 0.041833 TCCTCCTCCTTGTCCTCCTG 59.958 60.000 0.0 0.0 0.00 3.86 F
2740 3261 1.825474 GATCTTCTTCAGTCCGTGGGA 59.175 52.381 0.0 0.0 0.00 4.37 F
3563 4091 2.116125 AGCTGGCGGGAAAAAGCT 59.884 55.556 0.0 0.0 41.11 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2740 3261 0.827368 GAAGGGAATCGGAGAGTGCT 59.173 55.000 0.00 0.00 43.85 4.40 R
3128 3649 2.616256 CCTTCTGCAGCATCCTGTACAA 60.616 50.000 9.47 0.00 41.26 2.41 R
3563 4091 5.913137 ATCCAATAAATTCAAACGCCTCA 57.087 34.783 0.00 0.00 0.00 3.86 R
3635 4164 0.244994 AAGACAAGATGCGTCGCTCT 59.755 50.000 19.50 15.00 38.46 4.09 R
3637 4166 0.319900 ACAAGACAAGATGCGTCGCT 60.320 50.000 19.50 3.67 38.46 4.93 R
4690 5461 0.863799 CGATGCATCACCATCCTTCG 59.136 55.000 25.70 6.07 38.68 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.372499 CGTGTCCCCGTGTGTAGTG 60.372 63.158 0.00 0.00 0.00 2.74
114 127 6.635030 AATCTTTTGGCCTCGAATAATACC 57.365 37.500 3.32 0.00 0.00 2.73
167 183 1.975680 ACTGGGATACGTGGACTGTTT 59.024 47.619 0.00 0.00 37.60 2.83
200 218 5.237779 TCAAAAGTTTCCAGATTCCGTGTAC 59.762 40.000 0.00 0.00 0.00 2.90
209 227 0.537188 ATTCCGTGTACTGGCAGGAG 59.463 55.000 20.34 0.00 32.03 3.69
232 250 5.293569 AGGCACACAAGTAATAATAACTCGC 59.706 40.000 0.00 0.00 0.00 5.03
236 254 7.676338 GCACACAAGTAATAATAACTCGCATGT 60.676 37.037 0.00 0.00 0.00 3.21
272 317 7.964559 GGATACGCGTATACAGTGTCATTTATA 59.035 37.037 31.77 2.23 33.96 0.98
283 328 6.313905 ACAGTGTCATTTATAAGTGCAGTAGC 59.686 38.462 3.19 0.00 42.57 3.58
284 329 6.536582 CAGTGTCATTTATAAGTGCAGTAGCT 59.463 38.462 3.19 0.00 42.74 3.32
286 331 7.278868 AGTGTCATTTATAAGTGCAGTAGCTTC 59.721 37.037 3.19 0.00 42.74 3.86
307 352 7.497249 AGCTTCGTATTTCTGCAAGATATCTTT 59.503 33.333 15.49 2.22 46.36 2.52
312 561 8.276325 CGTATTTCTGCAAGATATCTTTGGTAC 58.724 37.037 15.49 10.21 46.36 3.34
320 569 9.109393 TGCAAGATATCTTTGGTACTATTTGTC 57.891 33.333 15.49 0.00 33.11 3.18
323 572 9.614792 AAGATATCTTTGGTACTATTTGTCCAC 57.385 33.333 12.37 0.00 30.82 4.02
324 573 8.211629 AGATATCTTTGGTACTATTTGTCCACC 58.788 37.037 0.00 0.00 0.00 4.61
325 574 5.836024 TCTTTGGTACTATTTGTCCACCT 57.164 39.130 0.00 0.00 30.52 4.00
326 575 6.938698 TCTTTGGTACTATTTGTCCACCTA 57.061 37.500 0.00 0.00 30.52 3.08
329 578 6.691255 TTGGTACTATTTGTCCACCTAAGT 57.309 37.500 0.00 0.00 30.52 2.24
334 583 8.409371 GGTACTATTTGTCCACCTAAGTACTAC 58.591 40.741 0.00 0.00 38.44 2.73
338 587 3.012518 TGTCCACCTAAGTACTACGAGC 58.987 50.000 0.00 0.00 0.00 5.03
391 640 6.127842 TGAGGCAAAATAAAACGGTTAGGATC 60.128 38.462 0.00 0.00 0.00 3.36
411 660 2.093288 TCAGGAGGAAATGCTGCACTAG 60.093 50.000 3.57 0.00 46.40 2.57
433 682 5.741011 AGAGCACGAATATTCTGGGTTAAA 58.259 37.500 13.45 0.00 0.00 1.52
455 704 9.952030 TTAAATGTATCTACTCAACATGTCCAA 57.048 29.630 0.00 0.00 34.20 3.53
457 706 8.862325 AATGTATCTACTCAACATGTCCAAAA 57.138 30.769 0.00 0.00 34.20 2.44
461 710 5.551233 TCTACTCAACATGTCCAAAAGAGG 58.449 41.667 0.00 0.00 0.00 3.69
471 720 1.301677 CCAAAAGAGGAGAGCCGTGC 61.302 60.000 0.00 0.00 39.96 5.34
476 725 0.461961 AGAGGAGAGCCGTGCATAAC 59.538 55.000 0.00 0.00 39.96 1.89
503 752 5.301551 TGCACCACATGAACTTTATTGAACT 59.698 36.000 0.00 0.00 0.00 3.01
514 763 9.210329 TGAACTTTATTGAACTGAAAGCGTATA 57.790 29.630 0.00 0.00 37.60 1.47
570 819 6.677027 ATAAGCGAGAGAATAAACGAATCG 57.323 37.500 0.00 0.00 0.00 3.34
574 823 3.417969 CGAGAGAATAAACGAATCGTCCG 59.582 47.826 9.32 0.00 39.99 4.79
648 909 0.750249 GCAAGGAGAGGAGGAGTAGC 59.250 60.000 0.00 0.00 0.00 3.58
658 919 3.866582 GGAGTAGCGGGGCAGCAT 61.867 66.667 6.94 0.00 40.15 3.79
659 920 2.280457 GAGTAGCGGGGCAGCATC 60.280 66.667 6.94 0.00 40.15 3.91
660 921 4.227134 AGTAGCGGGGCAGCATCG 62.227 66.667 6.94 0.00 40.15 3.84
679 940 4.750952 TCGCAATACTATTCTCTCTCCG 57.249 45.455 0.00 0.00 0.00 4.63
721 987 0.806868 CACACCCTACGCGAGACTTA 59.193 55.000 15.93 0.00 0.00 2.24
805 1282 1.349026 GCATCTTGGCCAGCTAGGATA 59.651 52.381 5.11 0.00 41.22 2.59
807 1284 2.775490 TCTTGGCCAGCTAGGATAGA 57.225 50.000 5.11 0.00 42.77 1.98
834 1311 1.133945 GGGATCCAAGCTTTCTCCTCC 60.134 57.143 15.23 9.21 0.00 4.30
835 1312 1.843206 GGATCCAAGCTTTCTCCTCCT 59.157 52.381 6.95 0.00 0.00 3.69
836 1313 2.158827 GGATCCAAGCTTTCTCCTCCTC 60.159 54.545 6.95 0.00 0.00 3.71
837 1314 2.334006 TCCAAGCTTTCTCCTCCTCT 57.666 50.000 0.00 0.00 0.00 3.69
838 1315 2.183679 TCCAAGCTTTCTCCTCCTCTC 58.816 52.381 0.00 0.00 0.00 3.20
839 1316 1.209261 CCAAGCTTTCTCCTCCTCTCC 59.791 57.143 0.00 0.00 0.00 3.71
840 1317 1.209261 CAAGCTTTCTCCTCCTCTCCC 59.791 57.143 0.00 0.00 0.00 4.30
841 1318 0.326143 AGCTTTCTCCTCCTCTCCCC 60.326 60.000 0.00 0.00 0.00 4.81
850 1327 0.185901 CTCCTCTCCCCTCCTCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
897 1374 3.801293 GCAGTCAAAGCTGGCATTTCTTT 60.801 43.478 0.00 0.00 37.00 2.52
902 1379 2.014010 AGCTGGCATTTCTTTTCCCA 57.986 45.000 0.00 0.00 0.00 4.37
930 1411 4.541250 TTTGCCATCATATTCCCCTTCT 57.459 40.909 0.00 0.00 0.00 2.85
1046 1548 5.663158 ATATATAGCCTCCTCTCTCCTCC 57.337 47.826 0.00 0.00 0.00 4.30
1047 1549 1.846803 ATAGCCTCCTCTCTCCTCCT 58.153 55.000 0.00 0.00 0.00 3.69
1052 1554 0.032217 CTCCTCTCTCCTCCTGCCTT 60.032 60.000 0.00 0.00 0.00 4.35
1053 1555 0.032615 TCCTCTCTCCTCCTGCCTTC 60.033 60.000 0.00 0.00 0.00 3.46
1101 1606 2.619590 GGTCTCTCTTCTCTTCCGGTCT 60.620 54.545 0.00 0.00 0.00 3.85
1102 1607 2.422127 GTCTCTCTTCTCTTCCGGTCTG 59.578 54.545 0.00 0.00 0.00 3.51
1103 1608 1.134175 CTCTCTTCTCTTCCGGTCTGC 59.866 57.143 0.00 0.00 0.00 4.26
1105 1610 0.251832 TCTTCTCTTCCGGTCTGCCT 60.252 55.000 0.00 0.00 0.00 4.75
1106 1611 0.174617 CTTCTCTTCCGGTCTGCCTC 59.825 60.000 0.00 0.00 0.00 4.70
1107 1612 0.251832 TTCTCTTCCGGTCTGCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
1109 1614 0.682855 CTCTTCCGGTCTGCCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
1112 1617 1.251527 TTCCGGTCTGCCTCTCTGTC 61.252 60.000 0.00 0.00 0.00 3.51
1113 1618 2.716017 CCGGTCTGCCTCTCTGTCC 61.716 68.421 0.00 0.00 0.00 4.02
1114 1619 1.979155 CGGTCTGCCTCTCTGTCCA 60.979 63.158 0.00 0.00 0.00 4.02
1115 1620 1.896694 GGTCTGCCTCTCTGTCCAG 59.103 63.158 0.00 0.00 0.00 3.86
1116 1621 1.217779 GTCTGCCTCTCTGTCCAGC 59.782 63.158 0.00 0.00 0.00 4.85
1117 1622 2.183811 CTGCCTCTCTGTCCAGCG 59.816 66.667 0.00 0.00 0.00 5.18
1118 1623 2.601666 TGCCTCTCTGTCCAGCGT 60.602 61.111 0.00 0.00 0.00 5.07
1120 1625 2.125753 CCTCTCTGTCCAGCGTGC 60.126 66.667 0.00 0.00 0.00 5.34
1121 1626 2.125753 CTCTCTGTCCAGCGTGCC 60.126 66.667 0.00 0.00 0.00 5.01
1200 1705 1.595993 CGGTCTCCTCGCCTTCTTCA 61.596 60.000 0.00 0.00 0.00 3.02
1221 1726 1.550976 GCTCCGGAGAAGAAGAGGAAA 59.449 52.381 35.69 0.00 0.00 3.13
1229 1734 2.915604 AGAAGAAGAGGAAATGGCTCCA 59.084 45.455 0.00 0.00 38.02 3.86
1230 1735 3.331889 AGAAGAAGAGGAAATGGCTCCAA 59.668 43.478 0.00 0.00 38.02 3.53
1250 1755 4.074970 CAAAGCAACAGGAAGGTCAGTAT 58.925 43.478 0.00 0.00 0.00 2.12
1251 1756 3.618690 AGCAACAGGAAGGTCAGTATC 57.381 47.619 0.00 0.00 0.00 2.24
1253 1758 3.003480 GCAACAGGAAGGTCAGTATCAC 58.997 50.000 0.00 0.00 0.00 3.06
1260 1765 2.233305 AGGTCAGTATCACCTCGGTT 57.767 50.000 0.00 0.00 40.54 4.44
1274 1780 2.629656 CGGTTCTTGCCTTGCCTGG 61.630 63.158 0.00 0.00 0.00 4.45
1276 1782 1.115326 GGTTCTTGCCTTGCCTGGTT 61.115 55.000 0.00 0.00 0.00 3.67
1277 1783 0.032540 GTTCTTGCCTTGCCTGGTTG 59.967 55.000 0.00 0.00 0.00 3.77
1283 1789 2.633509 CCTTGCCTGGTTGCAGCTC 61.634 63.158 0.00 0.00 43.21 4.09
1284 1790 1.602888 CTTGCCTGGTTGCAGCTCT 60.603 57.895 0.00 0.00 43.21 4.09
1306 1816 1.814793 TCTGAGATATCTCCGCTCCG 58.185 55.000 26.33 10.38 42.20 4.63
1324 1834 3.641648 TCCGCATTCTTTTCTTTGCTTG 58.358 40.909 0.00 0.00 32.97 4.01
1384 1895 1.514678 GGCTCATCCGTGCAACAACA 61.515 55.000 0.00 0.00 35.74 3.33
1392 1903 1.627879 CGTGCAACAACAGTTTGCTT 58.372 45.000 10.61 0.00 36.00 3.91
1487 1998 3.255642 CCGTCCAAATTCCAAATCACAGT 59.744 43.478 0.00 0.00 0.00 3.55
1494 2005 5.886960 AATTCCAAATCACAGTACAGCTC 57.113 39.130 0.00 0.00 0.00 4.09
1510 2021 3.614399 CTCCTTTGAGCGGACAACT 57.386 52.632 0.00 0.00 0.00 3.16
1512 2023 2.611518 CTCCTTTGAGCGGACAACTAG 58.388 52.381 0.00 0.00 0.00 2.57
1514 2025 3.159472 TCCTTTGAGCGGACAACTAGTA 58.841 45.455 0.00 0.00 0.00 1.82
1515 2026 3.767673 TCCTTTGAGCGGACAACTAGTAT 59.232 43.478 0.00 0.00 0.00 2.12
1516 2027 4.222145 TCCTTTGAGCGGACAACTAGTATT 59.778 41.667 0.00 0.00 0.00 1.89
1517 2028 4.935808 CCTTTGAGCGGACAACTAGTATTT 59.064 41.667 0.00 0.00 0.00 1.40
1518 2029 5.163854 CCTTTGAGCGGACAACTAGTATTTG 60.164 44.000 0.00 0.00 0.00 2.32
1523 2034 3.933332 GCGGACAACTAGTATTTGCTTCT 59.067 43.478 0.00 0.00 0.00 2.85
1616 2129 0.385029 CGTCTGCTATGCTCTGCTCT 59.615 55.000 0.00 0.00 0.00 4.09
2028 2543 0.041833 TCCTCCTCCTTGTCCTCCTG 59.958 60.000 0.00 0.00 0.00 3.86
2074 2589 2.654079 CCGTGCCAAGCTCCTCTCT 61.654 63.158 0.00 0.00 0.00 3.10
2122 2637 3.591254 GACTGACACTGGGACCGCC 62.591 68.421 0.00 0.00 0.00 6.13
2170 2685 4.492160 CTCAAGCGCCGCGTCCTA 62.492 66.667 15.34 0.00 0.00 2.94
2224 2739 1.978580 CAGTGGAGGTACTTGGTCCTT 59.021 52.381 0.00 0.00 41.55 3.36
2740 3261 1.825474 GATCTTCTTCAGTCCGTGGGA 59.175 52.381 0.00 0.00 0.00 4.37
2908 3429 2.501492 CCGGATTCAGGGACTACGT 58.499 57.895 0.00 0.00 36.02 3.57
3128 3649 2.186384 GCATGTCCGCTCTGCTCT 59.814 61.111 0.00 0.00 33.15 4.09
3190 3711 3.515611 GTGATCGACGAGGAGGCT 58.484 61.111 3.01 0.00 0.00 4.58
3255 3776 2.356673 GCCCAAGCAACAGCAAGC 60.357 61.111 0.00 0.00 39.53 4.01
3563 4091 2.116125 AGCTGGCGGGAAAAAGCT 59.884 55.556 0.00 0.00 41.11 3.74
3657 4186 1.067846 AGCGACGCATCTTGTCTTGTA 60.068 47.619 23.70 0.00 34.17 2.41
3658 4187 1.321743 GCGACGCATCTTGTCTTGTAG 59.678 52.381 16.42 0.00 34.17 2.74
3659 4188 2.596452 CGACGCATCTTGTCTTGTAGT 58.404 47.619 0.00 0.00 34.17 2.73
3660 4189 3.754955 CGACGCATCTTGTCTTGTAGTA 58.245 45.455 0.00 0.00 34.17 1.82
3661 4190 3.542704 CGACGCATCTTGTCTTGTAGTAC 59.457 47.826 0.00 0.00 34.17 2.73
3662 4191 4.672024 CGACGCATCTTGTCTTGTAGTACT 60.672 45.833 0.00 0.00 34.17 2.73
3680 4212 8.272889 TGTAGTACTACTATCTCTTGTGTGGAT 58.727 37.037 28.56 0.00 37.00 3.41
3686 4218 5.482908 ACTATCTCTTGTGTGGATGTGAAC 58.517 41.667 0.00 0.00 0.00 3.18
3690 4222 3.738982 TCTTGTGTGGATGTGAACGAAT 58.261 40.909 0.00 0.00 0.00 3.34
3725 4257 5.468409 TCATCTTGTTGAATGCGAGTTGTTA 59.532 36.000 0.00 0.00 0.00 2.41
3726 4258 5.090652 TCTTGTTGAATGCGAGTTGTTAC 57.909 39.130 0.00 0.00 0.00 2.50
3727 4259 4.572795 TCTTGTTGAATGCGAGTTGTTACA 59.427 37.500 0.00 0.00 0.00 2.41
3728 4260 4.466567 TGTTGAATGCGAGTTGTTACAG 57.533 40.909 0.00 0.00 0.00 2.74
3729 4261 3.874543 TGTTGAATGCGAGTTGTTACAGT 59.125 39.130 0.00 0.00 0.00 3.55
3730 4262 4.211389 GTTGAATGCGAGTTGTTACAGTG 58.789 43.478 0.00 0.00 0.00 3.66
3731 4263 2.223144 TGAATGCGAGTTGTTACAGTGC 59.777 45.455 0.00 0.00 0.00 4.40
3732 4264 1.877637 ATGCGAGTTGTTACAGTGCA 58.122 45.000 5.63 5.63 34.15 4.57
3733 4265 1.217001 TGCGAGTTGTTACAGTGCAG 58.783 50.000 0.00 0.00 0.00 4.41
3734 4266 1.217882 GCGAGTTGTTACAGTGCAGT 58.782 50.000 0.00 0.00 0.00 4.40
3735 4267 2.223852 TGCGAGTTGTTACAGTGCAGTA 60.224 45.455 0.00 0.00 0.00 2.74
3736 4268 2.798283 GCGAGTTGTTACAGTGCAGTAA 59.202 45.455 0.00 0.00 0.00 2.24
3737 4269 3.246699 GCGAGTTGTTACAGTGCAGTAAA 59.753 43.478 0.00 0.00 35.88 2.01
3738 4270 4.608445 GCGAGTTGTTACAGTGCAGTAAAG 60.608 45.833 0.00 0.00 35.88 1.85
3739 4271 4.506654 CGAGTTGTTACAGTGCAGTAAAGT 59.493 41.667 0.00 0.00 35.88 2.66
3740 4272 5.006358 CGAGTTGTTACAGTGCAGTAAAGTT 59.994 40.000 0.00 0.00 35.88 2.66
3741 4273 6.456449 CGAGTTGTTACAGTGCAGTAAAGTTT 60.456 38.462 0.00 0.00 35.88 2.66
3742 4274 7.153217 AGTTGTTACAGTGCAGTAAAGTTTT 57.847 32.000 0.00 0.00 35.88 2.43
3743 4275 7.599171 AGTTGTTACAGTGCAGTAAAGTTTTT 58.401 30.769 0.00 0.00 35.88 1.94
3832 4580 9.056005 GGTATGATGCACATTTTGAACTCTATA 57.944 33.333 7.02 0.00 40.07 1.31
3836 4584 9.836864 TGATGCACATTTTGAACTCTATATACT 57.163 29.630 0.00 0.00 0.00 2.12
3838 4586 8.662781 TGCACATTTTGAACTCTATATACTCC 57.337 34.615 0.00 0.00 0.00 3.85
3839 4587 7.715249 TGCACATTTTGAACTCTATATACTCCC 59.285 37.037 0.00 0.00 0.00 4.30
3840 4588 7.934120 GCACATTTTGAACTCTATATACTCCCT 59.066 37.037 0.00 0.00 0.00 4.20
3841 4589 9.482627 CACATTTTGAACTCTATATACTCCCTC 57.517 37.037 0.00 0.00 0.00 4.30
3842 4590 8.652290 ACATTTTGAACTCTATATACTCCCTCC 58.348 37.037 0.00 0.00 0.00 4.30
3843 4591 6.896021 TTTGAACTCTATATACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
3844 4592 5.579753 TGAACTCTATATACTCCCTCCGT 57.420 43.478 0.00 0.00 0.00 4.69
3845 4593 5.558818 TGAACTCTATATACTCCCTCCGTC 58.441 45.833 0.00 0.00 0.00 4.79
3846 4594 5.310068 TGAACTCTATATACTCCCTCCGTCT 59.690 44.000 0.00 0.00 0.00 4.18
3847 4595 5.846528 ACTCTATATACTCCCTCCGTCTT 57.153 43.478 0.00 0.00 0.00 3.01
3848 4596 5.807909 ACTCTATATACTCCCTCCGTCTTC 58.192 45.833 0.00 0.00 0.00 2.87
3849 4597 5.548836 ACTCTATATACTCCCTCCGTCTTCT 59.451 44.000 0.00 0.00 0.00 2.85
3850 4598 6.044637 ACTCTATATACTCCCTCCGTCTTCTT 59.955 42.308 0.00 0.00 0.00 2.52
3851 4599 6.850234 TCTATATACTCCCTCCGTCTTCTTT 58.150 40.000 0.00 0.00 0.00 2.52
3852 4600 7.296098 TCTATATACTCCCTCCGTCTTCTTTT 58.704 38.462 0.00 0.00 0.00 2.27
3853 4601 8.443176 TCTATATACTCCCTCCGTCTTCTTTTA 58.557 37.037 0.00 0.00 0.00 1.52
3854 4602 7.909485 ATATACTCCCTCCGTCTTCTTTTAA 57.091 36.000 0.00 0.00 0.00 1.52
3855 4603 6.809976 ATACTCCCTCCGTCTTCTTTTAAT 57.190 37.500 0.00 0.00 0.00 1.40
3856 4604 5.500546 ACTCCCTCCGTCTTCTTTTAATT 57.499 39.130 0.00 0.00 0.00 1.40
3857 4605 5.489249 ACTCCCTCCGTCTTCTTTTAATTC 58.511 41.667 0.00 0.00 0.00 2.17
3858 4606 4.501071 TCCCTCCGTCTTCTTTTAATTCG 58.499 43.478 0.00 0.00 0.00 3.34
3859 4607 3.063588 CCCTCCGTCTTCTTTTAATTCGC 59.936 47.826 0.00 0.00 0.00 4.70
3860 4608 3.682858 CCTCCGTCTTCTTTTAATTCGCA 59.317 43.478 0.00 0.00 0.00 5.10
3861 4609 4.332819 CCTCCGTCTTCTTTTAATTCGCAT 59.667 41.667 0.00 0.00 0.00 4.73
3862 4610 5.522460 CCTCCGTCTTCTTTTAATTCGCATA 59.478 40.000 0.00 0.00 0.00 3.14
3863 4611 6.202954 CCTCCGTCTTCTTTTAATTCGCATAT 59.797 38.462 0.00 0.00 0.00 1.78
3864 4612 7.384115 CCTCCGTCTTCTTTTAATTCGCATATA 59.616 37.037 0.00 0.00 0.00 0.86
3865 4613 8.651391 TCCGTCTTCTTTTAATTCGCATATAA 57.349 30.769 0.00 0.00 0.00 0.98
3866 4614 8.761497 TCCGTCTTCTTTTAATTCGCATATAAG 58.239 33.333 0.00 0.00 0.00 1.73
3867 4615 8.761497 CCGTCTTCTTTTAATTCGCATATAAGA 58.239 33.333 0.00 0.00 0.00 2.10
3879 4627 7.624360 TTCGCATATAAGAATTGGTCAAAGT 57.376 32.000 0.00 0.00 0.00 2.66
3880 4628 7.246674 TCGCATATAAGAATTGGTCAAAGTC 57.753 36.000 0.00 0.00 32.95 3.01
3881 4629 6.821160 TCGCATATAAGAATTGGTCAAAGTCA 59.179 34.615 0.00 0.00 35.28 3.41
3882 4630 7.335673 TCGCATATAAGAATTGGTCAAAGTCAA 59.664 33.333 0.00 0.00 35.28 3.18
3883 4631 7.967854 CGCATATAAGAATTGGTCAAAGTCAAA 59.032 33.333 0.00 0.00 35.28 2.69
3884 4632 9.076596 GCATATAAGAATTGGTCAAAGTCAAAC 57.923 33.333 0.00 0.00 35.28 2.93
3927 4675 9.533831 AGGTTTGTAGAAAAAGATATCCACATT 57.466 29.630 0.00 0.00 0.00 2.71
3928 4676 9.788960 GGTTTGTAGAAAAAGATATCCACATTC 57.211 33.333 0.00 0.09 0.00 2.67
3931 4679 8.196802 TGTAGAAAAAGATATCCACATTCACG 57.803 34.615 0.00 0.00 0.00 4.35
3932 4680 8.038351 TGTAGAAAAAGATATCCACATTCACGA 58.962 33.333 0.00 0.00 0.00 4.35
3933 4681 9.046296 GTAGAAAAAGATATCCACATTCACGAT 57.954 33.333 0.00 0.00 0.00 3.73
3935 4683 9.784531 AGAAAAAGATATCCACATTCACGATAT 57.215 29.630 0.00 0.00 33.02 1.63
3945 4693 8.615878 TCCACATTCACGATATAAAATTAGGG 57.384 34.615 0.00 0.00 0.00 3.53
3946 4694 8.433599 TCCACATTCACGATATAAAATTAGGGA 58.566 33.333 0.00 0.00 0.00 4.20
3947 4695 8.721478 CCACATTCACGATATAAAATTAGGGAG 58.279 37.037 0.00 0.00 0.00 4.30
3948 4696 9.273016 CACATTCACGATATAAAATTAGGGAGT 57.727 33.333 0.00 0.00 0.00 3.85
3951 4699 9.654663 ATTCACGATATAAAATTAGGGAGTAGC 57.345 33.333 0.00 0.00 0.00 3.58
3952 4700 8.418597 TCACGATATAAAATTAGGGAGTAGCT 57.581 34.615 0.00 0.00 0.00 3.32
3953 4701 9.524496 TCACGATATAAAATTAGGGAGTAGCTA 57.476 33.333 0.00 0.00 0.00 3.32
3954 4702 9.790389 CACGATATAAAATTAGGGAGTAGCTAG 57.210 37.037 0.00 0.00 0.00 3.42
3955 4703 9.750783 ACGATATAAAATTAGGGAGTAGCTAGA 57.249 33.333 0.00 0.00 0.00 2.43
3963 4711 9.663365 AAATTAGGGAGTAGCTAGAACTTATCT 57.337 33.333 0.00 0.00 42.48 1.98
4000 4748 8.424274 AATTTGGTCTCATTCACTTTGAAAAC 57.576 30.769 0.00 0.00 40.12 2.43
4001 4749 6.522625 TTGGTCTCATTCACTTTGAAAACA 57.477 33.333 0.00 0.00 40.12 2.83
4002 4750 6.522625 TGGTCTCATTCACTTTGAAAACAA 57.477 33.333 0.00 0.00 40.12 2.83
4003 4751 6.563422 TGGTCTCATTCACTTTGAAAACAAG 58.437 36.000 0.00 0.00 40.12 3.16
4004 4752 6.376864 TGGTCTCATTCACTTTGAAAACAAGA 59.623 34.615 0.00 0.00 40.12 3.02
4005 4753 7.093988 TGGTCTCATTCACTTTGAAAACAAGAA 60.094 33.333 0.00 0.00 40.12 2.52
4006 4754 7.220875 GGTCTCATTCACTTTGAAAACAAGAAC 59.779 37.037 0.00 0.00 40.12 3.01
4007 4755 7.754924 GTCTCATTCACTTTGAAAACAAGAACA 59.245 33.333 0.00 0.00 40.12 3.18
4008 4756 7.970061 TCTCATTCACTTTGAAAACAAGAACAG 59.030 33.333 0.00 0.00 40.12 3.16
4009 4757 7.825681 TCATTCACTTTGAAAACAAGAACAGA 58.174 30.769 0.00 0.00 40.12 3.41
4010 4758 8.469200 TCATTCACTTTGAAAACAAGAACAGAT 58.531 29.630 0.00 0.00 40.12 2.90
4011 4759 9.734620 CATTCACTTTGAAAACAAGAACAGATA 57.265 29.630 0.00 0.00 40.12 1.98
4012 4760 9.736023 ATTCACTTTGAAAACAAGAACAGATAC 57.264 29.630 0.00 0.00 40.12 2.24
4013 4761 8.275015 TCACTTTGAAAACAAGAACAGATACA 57.725 30.769 0.00 0.00 0.00 2.29
4014 4762 8.735315 TCACTTTGAAAACAAGAACAGATACAA 58.265 29.630 0.00 0.00 0.00 2.41
4015 4763 8.798153 CACTTTGAAAACAAGAACAGATACAAC 58.202 33.333 0.00 0.00 0.00 3.32
4016 4764 7.973944 ACTTTGAAAACAAGAACAGATACAACC 59.026 33.333 0.00 0.00 0.00 3.77
4017 4765 6.385649 TGAAAACAAGAACAGATACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
4018 4766 5.888724 TGAAAACAAGAACAGATACAACCCA 59.111 36.000 0.00 0.00 0.00 4.51
4019 4767 5.767816 AAACAAGAACAGATACAACCCAC 57.232 39.130 0.00 0.00 0.00 4.61
4020 4768 4.431416 ACAAGAACAGATACAACCCACA 57.569 40.909 0.00 0.00 0.00 4.17
4021 4769 4.985538 ACAAGAACAGATACAACCCACAT 58.014 39.130 0.00 0.00 0.00 3.21
4022 4770 5.003804 ACAAGAACAGATACAACCCACATC 58.996 41.667 0.00 0.00 0.00 3.06
4023 4771 4.908601 AGAACAGATACAACCCACATCA 57.091 40.909 0.00 0.00 0.00 3.07
4024 4772 4.836825 AGAACAGATACAACCCACATCAG 58.163 43.478 0.00 0.00 0.00 2.90
4025 4773 2.991250 ACAGATACAACCCACATCAGC 58.009 47.619 0.00 0.00 0.00 4.26
4026 4774 2.305635 ACAGATACAACCCACATCAGCA 59.694 45.455 0.00 0.00 0.00 4.41
4027 4775 3.054139 ACAGATACAACCCACATCAGCAT 60.054 43.478 0.00 0.00 0.00 3.79
4028 4776 4.164030 ACAGATACAACCCACATCAGCATA 59.836 41.667 0.00 0.00 0.00 3.14
4029 4777 4.512944 CAGATACAACCCACATCAGCATAC 59.487 45.833 0.00 0.00 0.00 2.39
4030 4778 2.877097 ACAACCCACATCAGCATACA 57.123 45.000 0.00 0.00 0.00 2.29
4031 4779 2.436417 ACAACCCACATCAGCATACAC 58.564 47.619 0.00 0.00 0.00 2.90
4032 4780 1.398041 CAACCCACATCAGCATACACG 59.602 52.381 0.00 0.00 0.00 4.49
4033 4781 0.744414 ACCCACATCAGCATACACGC 60.744 55.000 0.00 0.00 0.00 5.34
4034 4782 0.744057 CCCACATCAGCATACACGCA 60.744 55.000 0.00 0.00 0.00 5.24
4035 4783 1.302366 CCACATCAGCATACACGCAT 58.698 50.000 0.00 0.00 0.00 4.73
4036 4784 1.262417 CCACATCAGCATACACGCATC 59.738 52.381 0.00 0.00 0.00 3.91
4037 4785 2.207590 CACATCAGCATACACGCATCT 58.792 47.619 0.00 0.00 0.00 2.90
4038 4786 2.610833 CACATCAGCATACACGCATCTT 59.389 45.455 0.00 0.00 0.00 2.40
4039 4787 3.803778 CACATCAGCATACACGCATCTTA 59.196 43.478 0.00 0.00 0.00 2.10
4040 4788 4.450080 CACATCAGCATACACGCATCTTAT 59.550 41.667 0.00 0.00 0.00 1.73
4041 4789 5.634859 CACATCAGCATACACGCATCTTATA 59.365 40.000 0.00 0.00 0.00 0.98
4042 4790 5.866092 ACATCAGCATACACGCATCTTATAG 59.134 40.000 0.00 0.00 0.00 1.31
4043 4791 4.237724 TCAGCATACACGCATCTTATAGC 58.762 43.478 0.00 0.00 0.00 2.97
4044 4792 3.989817 CAGCATACACGCATCTTATAGCA 59.010 43.478 0.00 0.00 0.00 3.49
4045 4793 4.628766 CAGCATACACGCATCTTATAGCAT 59.371 41.667 0.00 0.00 0.00 3.79
4046 4794 4.867047 AGCATACACGCATCTTATAGCATC 59.133 41.667 0.00 0.00 0.00 3.91
4047 4795 4.627035 GCATACACGCATCTTATAGCATCA 59.373 41.667 0.00 0.00 0.00 3.07
4048 4796 5.445142 GCATACACGCATCTTATAGCATCAC 60.445 44.000 0.00 0.00 0.00 3.06
4049 4797 4.058721 ACACGCATCTTATAGCATCACA 57.941 40.909 0.00 0.00 0.00 3.58
4050 4798 4.635223 ACACGCATCTTATAGCATCACAT 58.365 39.130 0.00 0.00 0.00 3.21
4051 4799 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
4052 4800 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
4053 4801 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
4054 4802 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
4055 4803 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
4056 4804 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
4057 4805 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
4058 4806 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
4059 4807 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
4060 4808 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
4061 4809 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
4062 4810 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
4063 4811 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
4064 4812 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
4065 4813 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
4066 4814 6.324512 AGCATCACATCCAATGGCTATAAAAA 59.675 34.615 0.00 0.00 33.60 1.94
4067 4815 6.643770 GCATCACATCCAATGGCTATAAAAAG 59.356 38.462 0.00 0.00 33.60 2.27
4068 4816 7.685155 GCATCACATCCAATGGCTATAAAAAGT 60.685 37.037 0.00 0.00 33.60 2.66
4069 4817 7.099266 TCACATCCAATGGCTATAAAAAGTG 57.901 36.000 0.00 0.00 33.60 3.16
4070 4818 6.889177 TCACATCCAATGGCTATAAAAAGTGA 59.111 34.615 0.00 0.00 33.60 3.41
4071 4819 7.395772 TCACATCCAATGGCTATAAAAAGTGAA 59.604 33.333 0.00 0.00 33.60 3.18
4072 4820 8.199449 CACATCCAATGGCTATAAAAAGTGAAT 58.801 33.333 0.00 0.00 33.60 2.57
4073 4821 8.199449 ACATCCAATGGCTATAAAAAGTGAATG 58.801 33.333 0.00 0.00 33.60 2.67
4074 4822 7.953005 TCCAATGGCTATAAAAAGTGAATGA 57.047 32.000 0.00 0.00 0.00 2.57
4075 4823 7.999679 TCCAATGGCTATAAAAAGTGAATGAG 58.000 34.615 0.00 0.00 0.00 2.90
4076 4824 7.833682 TCCAATGGCTATAAAAAGTGAATGAGA 59.166 33.333 0.00 0.00 0.00 3.27
4077 4825 7.917505 CCAATGGCTATAAAAAGTGAATGAGAC 59.082 37.037 0.00 0.00 0.00 3.36
4078 4826 7.573968 ATGGCTATAAAAAGTGAATGAGACC 57.426 36.000 0.00 0.00 0.00 3.85
4079 4827 6.480763 TGGCTATAAAAAGTGAATGAGACCA 58.519 36.000 0.00 0.00 0.00 4.02
4080 4828 6.945435 TGGCTATAAAAAGTGAATGAGACCAA 59.055 34.615 0.00 0.00 0.00 3.67
4081 4829 7.450014 TGGCTATAAAAAGTGAATGAGACCAAA 59.550 33.333 0.00 0.00 0.00 3.28
4082 4830 7.755373 GGCTATAAAAAGTGAATGAGACCAAAC 59.245 37.037 0.00 0.00 0.00 2.93
4083 4831 8.515414 GCTATAAAAAGTGAATGAGACCAAACT 58.485 33.333 0.00 0.00 0.00 2.66
4089 4837 9.965902 AAAAGTGAATGAGACCAAACTATATCT 57.034 29.630 0.00 0.00 0.00 1.98
4090 4838 9.606631 AAAGTGAATGAGACCAAACTATATCTC 57.393 33.333 0.00 0.00 38.46 2.75
4118 4866 6.981762 AGATGAGTTCTAGCAAAACTGATG 57.018 37.500 0.32 0.00 37.10 3.07
4119 4867 6.705302 AGATGAGTTCTAGCAAAACTGATGA 58.295 36.000 0.32 0.00 37.10 2.92
4120 4868 7.164122 AGATGAGTTCTAGCAAAACTGATGAA 58.836 34.615 0.32 0.00 37.10 2.57
4121 4869 7.663081 AGATGAGTTCTAGCAAAACTGATGAAA 59.337 33.333 0.32 0.00 37.10 2.69
4122 4870 7.750229 TGAGTTCTAGCAAAACTGATGAAAT 57.250 32.000 0.32 0.00 37.10 2.17
4123 4871 8.169977 TGAGTTCTAGCAAAACTGATGAAATT 57.830 30.769 0.32 0.00 37.10 1.82
4124 4872 9.283768 TGAGTTCTAGCAAAACTGATGAAATTA 57.716 29.630 0.32 0.00 37.10 1.40
4126 4874 9.899226 AGTTCTAGCAAAACTGATGAAATTAAC 57.101 29.630 0.00 0.00 35.68 2.01
4127 4875 9.677567 GTTCTAGCAAAACTGATGAAATTAACA 57.322 29.630 0.00 0.00 0.00 2.41
4189 4937 6.403866 AACTTTGACCAAATCTTATGTGCA 57.596 33.333 0.00 0.00 0.00 4.57
4190 4938 6.403866 ACTTTGACCAAATCTTATGTGCAA 57.596 33.333 0.00 0.00 0.00 4.08
4191 4939 6.996509 ACTTTGACCAAATCTTATGTGCAAT 58.003 32.000 0.00 0.00 0.00 3.56
4192 4940 7.092716 ACTTTGACCAAATCTTATGTGCAATC 58.907 34.615 0.00 0.00 0.00 2.67
4193 4941 6.839124 TTGACCAAATCTTATGTGCAATCT 57.161 33.333 0.00 0.00 0.00 2.40
4194 4942 7.936496 TTGACCAAATCTTATGTGCAATCTA 57.064 32.000 0.00 0.00 0.00 1.98
4195 4943 7.936496 TGACCAAATCTTATGTGCAATCTAA 57.064 32.000 0.00 0.00 0.00 2.10
4196 4944 8.347004 TGACCAAATCTTATGTGCAATCTAAA 57.653 30.769 0.00 0.00 0.00 1.85
4197 4945 8.801299 TGACCAAATCTTATGTGCAATCTAAAA 58.199 29.630 0.00 0.00 0.00 1.52
4198 4946 9.638239 GACCAAATCTTATGTGCAATCTAAAAA 57.362 29.630 0.00 0.00 0.00 1.94
4199 4947 9.643693 ACCAAATCTTATGTGCAATCTAAAAAG 57.356 29.630 0.00 0.00 0.00 2.27
4200 4948 9.859427 CCAAATCTTATGTGCAATCTAAAAAGA 57.141 29.630 0.00 0.00 0.00 2.52
4204 4952 8.948853 TCTTATGTGCAATCTAAAAAGAAACG 57.051 30.769 0.00 0.00 0.00 3.60
4205 4953 8.020819 TCTTATGTGCAATCTAAAAAGAAACGG 58.979 33.333 0.00 0.00 0.00 4.44
4206 4954 5.759506 TGTGCAATCTAAAAAGAAACGGA 57.240 34.783 0.00 0.00 0.00 4.69
4207 4955 5.757886 TGTGCAATCTAAAAAGAAACGGAG 58.242 37.500 0.00 0.00 0.00 4.63
4208 4956 5.154222 GTGCAATCTAAAAAGAAACGGAGG 58.846 41.667 0.00 0.00 0.00 4.30
4209 4957 4.217550 TGCAATCTAAAAAGAAACGGAGGG 59.782 41.667 0.00 0.00 0.00 4.30
4210 4958 4.457949 GCAATCTAAAAAGAAACGGAGGGA 59.542 41.667 0.00 0.00 0.00 4.20
4211 4959 5.392057 GCAATCTAAAAAGAAACGGAGGGAG 60.392 44.000 0.00 0.00 0.00 4.30
4212 4960 4.968971 TCTAAAAAGAAACGGAGGGAGT 57.031 40.909 0.00 0.00 0.00 3.85
4213 4961 6.616237 ATCTAAAAAGAAACGGAGGGAGTA 57.384 37.500 0.00 0.00 0.00 2.59
4214 4962 5.787380 TCTAAAAAGAAACGGAGGGAGTAC 58.213 41.667 0.00 0.00 0.00 2.73
4215 4963 4.701651 AAAAAGAAACGGAGGGAGTACT 57.298 40.909 0.00 0.00 0.00 2.73
4243 4991 5.373812 AACCTCATGATTCCGGTTTCTAT 57.626 39.130 10.51 0.00 36.39 1.98
4259 5007 2.905075 TCTATCATTTGCACTCCACCG 58.095 47.619 0.00 0.00 0.00 4.94
4357 5117 1.040339 GTTGAGTGGGGGTGTTTGCA 61.040 55.000 0.00 0.00 0.00 4.08
4389 5149 0.179225 CGTAAATGGCGTGCAGTGAC 60.179 55.000 0.00 0.00 0.00 3.67
4411 5171 1.412343 GATTGCCTGGGACTCTCTCTC 59.588 57.143 0.00 0.00 0.00 3.20
4412 5172 0.411452 TTGCCTGGGACTCTCTCTCT 59.589 55.000 0.00 0.00 0.00 3.10
4413 5173 0.324183 TGCCTGGGACTCTCTCTCTG 60.324 60.000 0.00 0.00 0.00 3.35
4414 5174 1.675720 GCCTGGGACTCTCTCTCTGC 61.676 65.000 0.00 0.00 0.00 4.26
4415 5175 0.033208 CCTGGGACTCTCTCTCTGCT 60.033 60.000 0.00 0.00 0.00 4.24
4416 5176 1.105457 CTGGGACTCTCTCTCTGCTG 58.895 60.000 0.00 0.00 0.00 4.41
4417 5177 0.969917 TGGGACTCTCTCTCTGCTGC 60.970 60.000 0.00 0.00 0.00 5.25
4418 5178 0.684153 GGGACTCTCTCTCTGCTGCT 60.684 60.000 0.00 0.00 0.00 4.24
4419 5179 0.457035 GGACTCTCTCTCTGCTGCTG 59.543 60.000 0.00 0.00 0.00 4.41
4420 5180 0.457035 GACTCTCTCTCTGCTGCTGG 59.543 60.000 6.69 0.00 0.00 4.85
4421 5181 0.251742 ACTCTCTCTCTGCTGCTGGT 60.252 55.000 6.69 0.00 0.00 4.00
4422 5182 0.173935 CTCTCTCTCTGCTGCTGGTG 59.826 60.000 6.69 1.11 0.00 4.17
4459 5219 0.179156 GCAATGCAATCCACTGACCG 60.179 55.000 0.00 0.00 0.00 4.79
4462 5222 0.392998 ATGCAATCCACTGACCGTCC 60.393 55.000 0.00 0.00 0.00 4.79
4628 5388 4.814294 CCCGCCGCAGACACCTAC 62.814 72.222 0.00 0.00 0.00 3.18
4629 5389 3.760035 CCGCCGCAGACACCTACT 61.760 66.667 0.00 0.00 0.00 2.57
4632 5392 1.374343 CGCCGCAGACACCTACTCTA 61.374 60.000 0.00 0.00 0.00 2.43
4633 5393 0.100861 GCCGCAGACACCTACTCTAC 59.899 60.000 0.00 0.00 0.00 2.59
4634 5394 1.752683 CCGCAGACACCTACTCTACT 58.247 55.000 0.00 0.00 0.00 2.57
4638 5399 4.557205 CGCAGACACCTACTCTACTTTTT 58.443 43.478 0.00 0.00 0.00 1.94
4641 5402 5.405873 GCAGACACCTACTCTACTTTTTCAC 59.594 44.000 0.00 0.00 0.00 3.18
4710 5481 0.590195 GAAGGATGGTGATGCATCGC 59.410 55.000 28.33 28.33 36.61 4.58
4711 5482 0.182061 AAGGATGGTGATGCATCGCT 59.818 50.000 32.81 18.94 37.46 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.608283 GGACACGGAGAAAAGGTGGAG 60.608 57.143 0.00 0.00 36.02 3.86
35 36 2.125512 CAGGGCAGGAGCGTGTAC 60.126 66.667 0.00 0.00 43.41 2.90
167 183 3.271729 TGGAAACTTTTGACGTGCAGTA 58.728 40.909 0.00 0.00 0.00 2.74
200 218 1.970114 CTTGTGTGCCTCCTGCCAG 60.970 63.158 0.00 0.00 40.16 4.85
209 227 5.064198 TGCGAGTTATTATTACTTGTGTGCC 59.936 40.000 1.32 0.00 31.00 5.01
232 250 3.444618 CGTATCCAATCGCATCACATG 57.555 47.619 0.00 0.00 0.00 3.21
272 317 4.627467 CAGAAATACGAAGCTACTGCACTT 59.373 41.667 0.00 0.00 42.74 3.16
283 328 8.066595 CCAAAGATATCTTGCAGAAATACGAAG 58.933 37.037 18.61 0.00 36.12 3.79
284 329 7.552687 ACCAAAGATATCTTGCAGAAATACGAA 59.447 33.333 18.61 0.00 36.12 3.85
286 331 7.251704 ACCAAAGATATCTTGCAGAAATACG 57.748 36.000 18.61 2.07 36.12 3.06
307 352 6.955851 AGTACTTAGGTGGACAAATAGTACCA 59.044 38.462 0.00 0.00 38.00 3.25
312 561 7.325660 TCGTAGTACTTAGGTGGACAAATAG 57.674 40.000 0.00 0.00 0.00 1.73
320 569 4.650754 ATTGCTCGTAGTACTTAGGTGG 57.349 45.455 0.00 0.00 0.00 4.61
323 572 7.137426 ACGAATAATTGCTCGTAGTACTTAGG 58.863 38.462 13.16 0.00 45.94 2.69
368 617 5.712917 TGATCCTAACCGTTTTATTTTGCCT 59.287 36.000 0.00 0.00 0.00 4.75
378 627 2.829023 TCCTCCTGATCCTAACCGTTT 58.171 47.619 0.00 0.00 0.00 3.60
383 632 4.133078 CAGCATTTCCTCCTGATCCTAAC 58.867 47.826 0.00 0.00 0.00 2.34
391 640 2.093288 TCTAGTGCAGCATTTCCTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
411 660 6.038271 ACATTTAACCCAGAATATTCGTGCTC 59.962 38.462 9.78 0.00 0.00 4.26
433 682 8.321353 TCTTTTGGACATGTTGAGTAGATACAT 58.679 33.333 0.00 0.00 32.98 2.29
446 695 2.290577 GGCTCTCCTCTTTTGGACATGT 60.291 50.000 0.00 0.00 31.94 3.21
455 704 1.195115 TATGCACGGCTCTCCTCTTT 58.805 50.000 0.00 0.00 0.00 2.52
457 706 0.461961 GTTATGCACGGCTCTCCTCT 59.538 55.000 0.00 0.00 0.00 3.69
471 720 1.447945 TCATGTGGTGCACCGTTATG 58.552 50.000 30.07 28.62 39.43 1.90
476 725 0.667993 AAAGTTCATGTGGTGCACCG 59.332 50.000 30.07 16.33 39.43 4.94
484 733 7.149080 CGCTTTCAGTTCAATAAAGTTCATGTG 60.149 37.037 0.00 0.00 33.67 3.21
503 752 5.859521 TTTTAAAGCCGTATACGCTTTCA 57.140 34.783 31.78 24.66 41.76 2.69
514 763 7.391148 ACAGTATCATTCATTTTAAAGCCGT 57.609 32.000 0.00 0.00 0.00 5.68
570 819 6.171213 TCCTCTTTTCTTTTATCCTTCGGAC 58.829 40.000 0.00 0.00 32.98 4.79
648 909 2.591429 TATTGCGATGCTGCCCCG 60.591 61.111 0.00 1.48 0.00 5.73
658 919 3.058155 GCGGAGAGAGAATAGTATTGCGA 60.058 47.826 0.00 0.00 0.00 5.10
659 920 3.238441 GCGGAGAGAGAATAGTATTGCG 58.762 50.000 0.00 0.00 0.00 4.85
660 921 3.238441 CGCGGAGAGAGAATAGTATTGC 58.762 50.000 0.00 0.00 0.00 3.56
661 922 3.057876 AGCGCGGAGAGAGAATAGTATTG 60.058 47.826 8.83 0.00 0.00 1.90
811 1288 1.133945 GGAGAAAGCTTGGATCCCTCC 60.134 57.143 9.90 11.96 42.45 4.30
834 1311 2.387757 CTTTCAGAGAGGAGGGGAGAG 58.612 57.143 0.00 0.00 0.00 3.20
835 1312 1.007721 CCTTTCAGAGAGGAGGGGAGA 59.992 57.143 0.14 0.00 36.33 3.71
836 1313 1.494960 CCTTTCAGAGAGGAGGGGAG 58.505 60.000 0.14 0.00 36.33 4.30
837 1314 0.043334 CCCTTTCAGAGAGGAGGGGA 59.957 60.000 8.67 0.00 44.21 4.81
838 1315 2.614001 CCCTTTCAGAGAGGAGGGG 58.386 63.158 8.67 0.00 44.21 4.79
840 1317 2.355615 GCTTTCCCTTTCAGAGAGGAGG 60.356 54.545 8.67 0.00 36.33 4.30
841 1318 2.304180 TGCTTTCCCTTTCAGAGAGGAG 59.696 50.000 8.67 0.00 36.33 3.69
850 1327 1.801178 CACTCTCGTGCTTTCCCTTTC 59.199 52.381 0.00 0.00 33.82 2.62
897 1374 0.413037 ATGGCAAATGAGGGTGGGAA 59.587 50.000 0.00 0.00 0.00 3.97
902 1379 4.154942 GGAATATGATGGCAAATGAGGGT 58.845 43.478 0.00 0.00 0.00 4.34
930 1411 1.162505 TGGTTGGGGAGAAAATGGGA 58.837 50.000 0.00 0.00 0.00 4.37
988 1487 4.216257 CCCAAATCTAACACCTTGTGACTG 59.784 45.833 0.49 0.00 36.96 3.51
1046 1548 1.067250 GCTAGGCGAGAGAAGGCAG 59.933 63.158 0.00 0.00 36.55 4.85
1047 1549 2.427245 GGCTAGGCGAGAGAAGGCA 61.427 63.158 0.00 0.00 36.55 4.75
1052 1554 0.397114 TGGAATGGCTAGGCGAGAGA 60.397 55.000 12.19 0.00 0.00 3.10
1053 1555 0.683973 ATGGAATGGCTAGGCGAGAG 59.316 55.000 12.19 0.00 0.00 3.20
1080 1582 1.746787 GACCGGAAGAGAAGAGAGACC 59.253 57.143 9.46 0.00 0.00 3.85
1081 1583 2.422127 CAGACCGGAAGAGAAGAGAGAC 59.578 54.545 9.46 0.00 0.00 3.36
1082 1584 2.717390 CAGACCGGAAGAGAAGAGAGA 58.283 52.381 9.46 0.00 0.00 3.10
1101 1606 2.601666 ACGCTGGACAGAGAGGCA 60.602 61.111 10.02 0.00 32.37 4.75
1102 1607 2.125753 CACGCTGGACAGAGAGGC 60.126 66.667 10.02 0.00 32.37 4.70
1103 1608 2.125753 GCACGCTGGACAGAGAGG 60.126 66.667 10.02 3.17 32.37 3.69
1117 1622 3.559657 CTCGGATCGATCCCGGCAC 62.560 68.421 33.51 12.21 46.47 5.01
1118 1623 3.295273 CTCGGATCGATCCCGGCA 61.295 66.667 33.51 16.90 46.47 5.69
1120 1625 2.479412 GAAGCTCGGATCGATCCCGG 62.479 65.000 33.51 26.39 46.47 5.73
1147 1652 1.721487 CATCAATCGGCGAACCCAC 59.279 57.895 15.93 0.00 0.00 4.61
1200 1705 0.333312 TCCTCTTCTTCTCCGGAGCT 59.667 55.000 27.39 0.00 0.00 4.09
1229 1734 2.736670 ACTGACCTTCCTGTTGCTTT 57.263 45.000 0.00 0.00 0.00 3.51
1230 1735 3.327757 TGATACTGACCTTCCTGTTGCTT 59.672 43.478 0.00 0.00 0.00 3.91
1250 1755 0.250295 CAAGGCAAGAACCGAGGTGA 60.250 55.000 0.00 0.00 33.69 4.02
1251 1756 1.856265 GCAAGGCAAGAACCGAGGTG 61.856 60.000 0.00 0.00 33.69 4.00
1253 1758 2.335712 GGCAAGGCAAGAACCGAGG 61.336 63.158 0.00 0.00 33.69 4.63
1260 1765 2.202395 GCAACCAGGCAAGGCAAGA 61.202 57.895 0.00 0.00 0.00 3.02
1274 1780 2.669300 TCTCAGATCAGAGCTGCAAC 57.331 50.000 11.08 0.00 35.59 4.17
1276 1782 4.409187 AGATATCTCAGATCAGAGCTGCA 58.591 43.478 11.08 0.20 35.59 4.41
1277 1783 4.142315 GGAGATATCTCAGATCAGAGCTGC 60.142 50.000 29.33 7.81 44.60 5.25
1306 1816 3.732212 ACCCAAGCAAAGAAAAGAATGC 58.268 40.909 0.00 0.00 39.06 3.56
1324 1834 1.515521 CGGCTGAAGAACACCAACCC 61.516 60.000 0.00 0.00 0.00 4.11
1373 1884 1.627879 AAGCAAACTGTTGTTGCACG 58.372 45.000 16.84 0.00 37.06 5.34
1423 1934 3.909732 TGTGGAGTCAAAGGACCAAATT 58.090 40.909 0.00 0.00 45.48 1.82
1494 2005 2.457366 ACTAGTTGTCCGCTCAAAGG 57.543 50.000 0.00 0.00 0.00 3.11
1503 2014 7.674471 AGAAAGAAGCAAATACTAGTTGTCC 57.326 36.000 0.00 0.00 0.00 4.02
1506 2017 8.495949 TCGAAAGAAAGAAGCAAATACTAGTTG 58.504 33.333 0.00 0.00 37.03 3.16
1510 2021 6.649141 TGCTCGAAAGAAAGAAGCAAATACTA 59.351 34.615 0.00 0.00 41.32 1.82
1512 2023 5.689819 TGCTCGAAAGAAAGAAGCAAATAC 58.310 37.500 0.00 0.00 41.32 1.89
1514 2025 4.836125 TGCTCGAAAGAAAGAAGCAAAT 57.164 36.364 0.00 0.00 41.32 2.32
1515 2026 4.539870 CATGCTCGAAAGAAAGAAGCAAA 58.460 39.130 0.00 0.00 41.32 3.68
1516 2027 3.058016 CCATGCTCGAAAGAAAGAAGCAA 60.058 43.478 0.00 0.00 41.32 3.91
1517 2028 2.485426 CCATGCTCGAAAGAAAGAAGCA 59.515 45.455 0.00 0.00 41.32 3.91
1518 2029 2.730402 GCCATGCTCGAAAGAAAGAAGC 60.730 50.000 0.00 0.00 41.32 3.86
1523 2034 0.516877 CACGCCATGCTCGAAAGAAA 59.483 50.000 11.67 0.00 41.32 2.52
1563 2074 2.507944 CAGGCCGATCTTGGAGGG 59.492 66.667 0.00 0.00 0.00 4.30
1616 2129 3.541632 ACAAGAAAGAAAACCGAGAGCA 58.458 40.909 0.00 0.00 0.00 4.26
1671 2184 4.764172 AGAAAGATGGACCAATTCGAGAG 58.236 43.478 0.00 0.00 0.00 3.20
2122 2637 4.767255 AAGCAGCGGAAGGAGCGG 62.767 66.667 0.00 0.00 40.04 5.52
2170 2685 1.331399 GGTTCTTAGAGAGGCCGGCT 61.331 60.000 28.56 12.77 0.00 5.52
2224 2739 0.827507 GGTGAAAGCAAGCTTCCCCA 60.828 55.000 7.88 4.37 34.84 4.96
2725 3246 1.533033 TGCTCCCACGGACTGAAGA 60.533 57.895 0.00 0.00 0.00 2.87
2740 3261 0.827368 GAAGGGAATCGGAGAGTGCT 59.173 55.000 0.00 0.00 43.85 4.40
3128 3649 2.616256 CCTTCTGCAGCATCCTGTACAA 60.616 50.000 9.47 0.00 41.26 2.41
3563 4091 5.913137 ATCCAATAAATTCAAACGCCTCA 57.087 34.783 0.00 0.00 0.00 3.86
3635 4164 0.244994 AAGACAAGATGCGTCGCTCT 59.755 50.000 19.50 15.00 38.46 4.09
3637 4166 0.319900 ACAAGACAAGATGCGTCGCT 60.320 50.000 19.50 3.67 38.46 4.93
3657 4186 7.067615 CACATCCACACAAGAGATAGTAGTACT 59.932 40.741 8.14 8.14 0.00 2.73
3658 4187 7.067129 TCACATCCACACAAGAGATAGTAGTAC 59.933 40.741 0.00 0.00 0.00 2.73
3659 4188 7.116736 TCACATCCACACAAGAGATAGTAGTA 58.883 38.462 0.00 0.00 0.00 1.82
3660 4189 5.952347 TCACATCCACACAAGAGATAGTAGT 59.048 40.000 0.00 0.00 0.00 2.73
3661 4190 6.456795 TCACATCCACACAAGAGATAGTAG 57.543 41.667 0.00 0.00 0.00 2.57
3662 4191 6.625081 CGTTCACATCCACACAAGAGATAGTA 60.625 42.308 0.00 0.00 0.00 1.82
3743 4275 8.819643 ACTTTACTGCACTGTTGTTTTAAAAA 57.180 26.923 1.31 0.00 0.00 1.94
3744 4276 8.819643 AACTTTACTGCACTGTTGTTTTAAAA 57.180 26.923 0.00 0.00 0.00 1.52
3745 4277 8.819643 AAACTTTACTGCACTGTTGTTTTAAA 57.180 26.923 0.00 0.00 0.00 1.52
3746 4278 8.301002 AGAAACTTTACTGCACTGTTGTTTTAA 58.699 29.630 0.00 0.00 0.00 1.52
3747 4279 7.822658 AGAAACTTTACTGCACTGTTGTTTTA 58.177 30.769 0.00 0.00 0.00 1.52
3748 4280 6.687604 AGAAACTTTACTGCACTGTTGTTTT 58.312 32.000 0.00 0.00 0.00 2.43
3749 4281 6.151144 AGAGAAACTTTACTGCACTGTTGTTT 59.849 34.615 0.00 0.00 0.00 2.83
3750 4282 5.648092 AGAGAAACTTTACTGCACTGTTGTT 59.352 36.000 0.00 0.00 0.00 2.83
3751 4283 5.186198 AGAGAAACTTTACTGCACTGTTGT 58.814 37.500 0.00 0.00 0.00 3.32
3752 4284 5.741388 AGAGAAACTTTACTGCACTGTTG 57.259 39.130 0.00 0.00 0.00 3.33
3753 4285 6.759497 AAAGAGAAACTTTACTGCACTGTT 57.241 33.333 0.00 0.00 45.58 3.16
3801 4549 2.664402 AATGTGCATCATACCCTCCC 57.336 50.000 0.00 0.00 35.48 4.30
3832 4580 6.809976 ATTAAAAGAAGACGGAGGGAGTAT 57.190 37.500 0.00 0.00 0.00 2.12
3836 4584 4.501071 CGAATTAAAAGAAGACGGAGGGA 58.499 43.478 0.00 0.00 0.00 4.20
3837 4585 3.063588 GCGAATTAAAAGAAGACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
3838 4586 3.682858 TGCGAATTAAAAGAAGACGGAGG 59.317 43.478 0.00 0.00 0.00 4.30
3839 4587 4.921470 TGCGAATTAAAAGAAGACGGAG 57.079 40.909 0.00 0.00 0.00 4.63
3840 4588 8.651391 TTATATGCGAATTAAAAGAAGACGGA 57.349 30.769 0.00 0.00 0.00 4.69
3841 4589 8.761497 TCTTATATGCGAATTAAAAGAAGACGG 58.239 33.333 0.00 0.00 0.00 4.79
3853 4601 8.686334 ACTTTGACCAATTCTTATATGCGAATT 58.314 29.630 7.74 7.74 39.66 2.17
3854 4602 8.225603 ACTTTGACCAATTCTTATATGCGAAT 57.774 30.769 0.00 0.00 0.00 3.34
3855 4603 7.335673 TGACTTTGACCAATTCTTATATGCGAA 59.664 33.333 0.00 0.00 0.00 4.70
3856 4604 6.821160 TGACTTTGACCAATTCTTATATGCGA 59.179 34.615 0.00 0.00 0.00 5.10
3857 4605 7.015226 TGACTTTGACCAATTCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
3858 4606 9.076596 GTTTGACTTTGACCAATTCTTATATGC 57.923 33.333 0.00 0.00 0.00 3.14
3901 4649 9.533831 AATGTGGATATCTTTTTCTACAAACCT 57.466 29.630 2.05 0.00 36.99 3.50
3902 4650 9.788960 GAATGTGGATATCTTTTTCTACAAACC 57.211 33.333 2.05 0.00 36.99 3.27
3905 4653 8.664798 CGTGAATGTGGATATCTTTTTCTACAA 58.335 33.333 2.05 0.00 36.99 2.41
3906 4654 8.038351 TCGTGAATGTGGATATCTTTTTCTACA 58.962 33.333 2.05 0.00 37.67 2.74
3907 4655 8.420374 TCGTGAATGTGGATATCTTTTTCTAC 57.580 34.615 2.05 3.17 0.00 2.59
3909 4657 9.784531 ATATCGTGAATGTGGATATCTTTTTCT 57.215 29.630 2.05 0.00 29.67 2.52
3919 4667 9.231297 CCCTAATTTTATATCGTGAATGTGGAT 57.769 33.333 0.00 0.00 0.00 3.41
3920 4668 8.433599 TCCCTAATTTTATATCGTGAATGTGGA 58.566 33.333 0.00 0.00 0.00 4.02
3921 4669 8.615878 TCCCTAATTTTATATCGTGAATGTGG 57.384 34.615 0.00 0.00 0.00 4.17
3922 4670 9.273016 ACTCCCTAATTTTATATCGTGAATGTG 57.727 33.333 0.00 0.00 0.00 3.21
3925 4673 9.654663 GCTACTCCCTAATTTTATATCGTGAAT 57.345 33.333 0.00 0.00 0.00 2.57
3926 4674 8.867097 AGCTACTCCCTAATTTTATATCGTGAA 58.133 33.333 0.00 0.00 0.00 3.18
3927 4675 8.418597 AGCTACTCCCTAATTTTATATCGTGA 57.581 34.615 0.00 0.00 0.00 4.35
3928 4676 9.790389 CTAGCTACTCCCTAATTTTATATCGTG 57.210 37.037 0.00 0.00 0.00 4.35
3929 4677 9.750783 TCTAGCTACTCCCTAATTTTATATCGT 57.249 33.333 0.00 0.00 0.00 3.73
3937 4685 9.663365 AGATAAGTTCTAGCTACTCCCTAATTT 57.337 33.333 0.00 0.00 30.96 1.82
3939 4687 9.969001 CTAGATAAGTTCTAGCTACTCCCTAAT 57.031 37.037 0.00 0.00 45.63 1.73
3974 4722 9.528018 GTTTTCAAAGTGAATGAGACCAAATTA 57.472 29.630 0.00 0.00 36.11 1.40
3975 4723 8.040132 TGTTTTCAAAGTGAATGAGACCAAATT 58.960 29.630 0.00 0.00 36.11 1.82
3976 4724 7.555087 TGTTTTCAAAGTGAATGAGACCAAAT 58.445 30.769 0.00 0.00 36.11 2.32
3977 4725 6.929625 TGTTTTCAAAGTGAATGAGACCAAA 58.070 32.000 0.00 0.00 36.11 3.28
3978 4726 6.522625 TGTTTTCAAAGTGAATGAGACCAA 57.477 33.333 0.00 0.00 36.11 3.67
3979 4727 6.376864 TCTTGTTTTCAAAGTGAATGAGACCA 59.623 34.615 0.00 0.00 39.47 4.02
3980 4728 6.795399 TCTTGTTTTCAAAGTGAATGAGACC 58.205 36.000 0.00 0.00 39.47 3.85
3981 4729 7.754924 TGTTCTTGTTTTCAAAGTGAATGAGAC 59.245 33.333 0.00 0.00 39.47 3.36
3982 4730 7.825681 TGTTCTTGTTTTCAAAGTGAATGAGA 58.174 30.769 0.00 0.00 39.47 3.27
3983 4731 7.970061 TCTGTTCTTGTTTTCAAAGTGAATGAG 59.030 33.333 0.00 0.00 39.47 2.90
3984 4732 7.825681 TCTGTTCTTGTTTTCAAAGTGAATGA 58.174 30.769 0.00 0.00 39.47 2.57
3985 4733 8.638685 ATCTGTTCTTGTTTTCAAAGTGAATG 57.361 30.769 0.00 0.00 39.47 2.67
3986 4734 9.736023 GTATCTGTTCTTGTTTTCAAAGTGAAT 57.264 29.630 0.00 0.00 39.47 2.57
3987 4735 8.735315 TGTATCTGTTCTTGTTTTCAAAGTGAA 58.265 29.630 0.00 0.00 39.47 3.18
3988 4736 8.275015 TGTATCTGTTCTTGTTTTCAAAGTGA 57.725 30.769 0.00 0.00 39.47 3.41
3989 4737 8.798153 GTTGTATCTGTTCTTGTTTTCAAAGTG 58.202 33.333 0.00 0.00 39.47 3.16
3990 4738 7.973944 GGTTGTATCTGTTCTTGTTTTCAAAGT 59.026 33.333 0.00 0.00 39.47 2.66
3991 4739 7.435192 GGGTTGTATCTGTTCTTGTTTTCAAAG 59.565 37.037 0.00 0.00 39.47 2.77
3992 4740 7.093727 TGGGTTGTATCTGTTCTTGTTTTCAAA 60.094 33.333 0.00 0.00 39.47 2.69
3993 4741 6.378564 TGGGTTGTATCTGTTCTTGTTTTCAA 59.621 34.615 0.00 0.00 38.21 2.69
3994 4742 5.888724 TGGGTTGTATCTGTTCTTGTTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
3995 4743 6.183360 TGTGGGTTGTATCTGTTCTTGTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
3996 4744 5.654650 TGTGGGTTGTATCTGTTCTTGTTTT 59.345 36.000 0.00 0.00 0.00 2.43
3997 4745 5.197451 TGTGGGTTGTATCTGTTCTTGTTT 58.803 37.500 0.00 0.00 0.00 2.83
3998 4746 4.787551 TGTGGGTTGTATCTGTTCTTGTT 58.212 39.130 0.00 0.00 0.00 2.83
3999 4747 4.431416 TGTGGGTTGTATCTGTTCTTGT 57.569 40.909 0.00 0.00 0.00 3.16
4000 4748 5.003160 TGATGTGGGTTGTATCTGTTCTTG 58.997 41.667 0.00 0.00 0.00 3.02
4001 4749 5.241403 TGATGTGGGTTGTATCTGTTCTT 57.759 39.130 0.00 0.00 0.00 2.52
4002 4750 4.836825 CTGATGTGGGTTGTATCTGTTCT 58.163 43.478 0.00 0.00 0.00 3.01
4003 4751 3.375299 GCTGATGTGGGTTGTATCTGTTC 59.625 47.826 0.00 0.00 0.00 3.18
4004 4752 3.244875 TGCTGATGTGGGTTGTATCTGTT 60.245 43.478 0.00 0.00 0.00 3.16
4005 4753 2.305635 TGCTGATGTGGGTTGTATCTGT 59.694 45.455 0.00 0.00 0.00 3.41
4006 4754 2.989909 TGCTGATGTGGGTTGTATCTG 58.010 47.619 0.00 0.00 0.00 2.90
4007 4755 3.939740 ATGCTGATGTGGGTTGTATCT 57.060 42.857 0.00 0.00 0.00 1.98
4008 4756 4.273480 GTGTATGCTGATGTGGGTTGTATC 59.727 45.833 0.00 0.00 0.00 2.24
4009 4757 4.199310 GTGTATGCTGATGTGGGTTGTAT 58.801 43.478 0.00 0.00 0.00 2.29
4010 4758 3.605634 GTGTATGCTGATGTGGGTTGTA 58.394 45.455 0.00 0.00 0.00 2.41
4011 4759 2.436417 GTGTATGCTGATGTGGGTTGT 58.564 47.619 0.00 0.00 0.00 3.32
4012 4760 1.398041 CGTGTATGCTGATGTGGGTTG 59.602 52.381 0.00 0.00 0.00 3.77
4013 4761 1.737838 CGTGTATGCTGATGTGGGTT 58.262 50.000 0.00 0.00 0.00 4.11
4014 4762 0.744414 GCGTGTATGCTGATGTGGGT 60.744 55.000 0.00 0.00 0.00 4.51
4015 4763 0.744057 TGCGTGTATGCTGATGTGGG 60.744 55.000 0.00 0.00 35.36 4.61
4016 4764 1.262417 GATGCGTGTATGCTGATGTGG 59.738 52.381 0.00 0.00 35.36 4.17
4017 4765 2.207590 AGATGCGTGTATGCTGATGTG 58.792 47.619 0.00 0.00 35.36 3.21
4018 4766 2.609427 AGATGCGTGTATGCTGATGT 57.391 45.000 0.00 0.00 35.36 3.06
4019 4767 5.220359 GCTATAAGATGCGTGTATGCTGATG 60.220 44.000 0.00 0.00 35.36 3.07
4020 4768 4.867047 GCTATAAGATGCGTGTATGCTGAT 59.133 41.667 0.00 0.00 35.36 2.90
4021 4769 4.237724 GCTATAAGATGCGTGTATGCTGA 58.762 43.478 0.00 0.00 35.36 4.26
4022 4770 3.989817 TGCTATAAGATGCGTGTATGCTG 59.010 43.478 0.00 0.00 35.36 4.41
4023 4771 4.257267 TGCTATAAGATGCGTGTATGCT 57.743 40.909 0.00 0.00 35.36 3.79
4024 4772 4.627035 TGATGCTATAAGATGCGTGTATGC 59.373 41.667 0.00 0.00 0.00 3.14
4025 4773 5.634859 TGTGATGCTATAAGATGCGTGTATG 59.365 40.000 0.00 0.00 0.00 2.39
4026 4774 5.783111 TGTGATGCTATAAGATGCGTGTAT 58.217 37.500 0.00 0.00 0.00 2.29
4027 4775 5.195001 TGTGATGCTATAAGATGCGTGTA 57.805 39.130 0.00 0.00 0.00 2.90
4028 4776 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
4029 4777 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
4030 4778 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
4031 4779 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
4032 4780 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
4033 4781 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
4034 4782 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
4035 4783 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
4036 4784 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
4037 4785 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
4038 4786 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
4039 4787 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
4040 4788 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
4041 4789 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
4042 4790 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
4043 4791 7.650504 CACTTTTTATAGCCATTGGATGTGATG 59.349 37.037 6.95 0.00 0.00 3.07
4044 4792 7.560991 TCACTTTTTATAGCCATTGGATGTGAT 59.439 33.333 6.95 0.00 0.00 3.06
4045 4793 6.889177 TCACTTTTTATAGCCATTGGATGTGA 59.111 34.615 6.95 5.43 0.00 3.58
4046 4794 7.099266 TCACTTTTTATAGCCATTGGATGTG 57.901 36.000 6.95 2.95 0.00 3.21
4047 4795 7.716799 TTCACTTTTTATAGCCATTGGATGT 57.283 32.000 6.95 0.10 0.00 3.06
4048 4796 8.415553 TCATTCACTTTTTATAGCCATTGGATG 58.584 33.333 6.95 0.00 0.00 3.51
4049 4797 8.537728 TCATTCACTTTTTATAGCCATTGGAT 57.462 30.769 6.95 1.78 0.00 3.41
4050 4798 7.833682 TCTCATTCACTTTTTATAGCCATTGGA 59.166 33.333 6.95 0.00 0.00 3.53
4051 4799 7.917505 GTCTCATTCACTTTTTATAGCCATTGG 59.082 37.037 0.00 0.00 0.00 3.16
4052 4800 7.917505 GGTCTCATTCACTTTTTATAGCCATTG 59.082 37.037 0.00 0.00 0.00 2.82
4053 4801 7.615365 TGGTCTCATTCACTTTTTATAGCCATT 59.385 33.333 0.00 0.00 0.00 3.16
4054 4802 7.118723 TGGTCTCATTCACTTTTTATAGCCAT 58.881 34.615 0.00 0.00 0.00 4.40
4055 4803 6.480763 TGGTCTCATTCACTTTTTATAGCCA 58.519 36.000 0.00 0.00 0.00 4.75
4056 4804 7.391148 TTGGTCTCATTCACTTTTTATAGCC 57.609 36.000 0.00 0.00 0.00 3.93
4057 4805 8.515414 AGTTTGGTCTCATTCACTTTTTATAGC 58.485 33.333 0.00 0.00 0.00 2.97
4063 4811 9.965902 AGATATAGTTTGGTCTCATTCACTTTT 57.034 29.630 0.00 0.00 0.00 2.27
4064 4812 9.606631 GAGATATAGTTTGGTCTCATTCACTTT 57.393 33.333 0.00 0.00 37.60 2.66
4065 4813 8.762645 TGAGATATAGTTTGGTCTCATTCACTT 58.237 33.333 0.16 0.00 41.40 3.16
4066 4814 8.311395 TGAGATATAGTTTGGTCTCATTCACT 57.689 34.615 0.16 0.00 41.40 3.41
4094 4842 7.840931 TCATCAGTTTTGCTAGAACTCATCTA 58.159 34.615 0.00 0.00 39.71 1.98
4095 4843 6.705302 TCATCAGTTTTGCTAGAACTCATCT 58.295 36.000 0.00 0.00 42.48 2.90
4096 4844 6.974932 TCATCAGTTTTGCTAGAACTCATC 57.025 37.500 0.00 0.00 35.26 2.92
4097 4845 7.750229 TTTCATCAGTTTTGCTAGAACTCAT 57.250 32.000 0.00 0.00 35.26 2.90
4098 4846 7.750229 ATTTCATCAGTTTTGCTAGAACTCA 57.250 32.000 0.00 0.00 35.26 3.41
4100 4848 9.899226 GTTAATTTCATCAGTTTTGCTAGAACT 57.101 29.630 0.00 0.00 37.82 3.01
4101 4849 9.677567 TGTTAATTTCATCAGTTTTGCTAGAAC 57.322 29.630 0.00 0.00 0.00 3.01
4163 4911 9.237187 TGCACATAAGATTTGGTCAAAGTTATA 57.763 29.630 2.55 0.00 33.32 0.98
4164 4912 8.121305 TGCACATAAGATTTGGTCAAAGTTAT 57.879 30.769 2.55 5.52 33.32 1.89
4165 4913 7.517614 TGCACATAAGATTTGGTCAAAGTTA 57.482 32.000 2.55 3.72 33.32 2.24
4166 4914 6.403866 TGCACATAAGATTTGGTCAAAGTT 57.596 33.333 2.55 1.84 33.32 2.66
4167 4915 6.403866 TTGCACATAAGATTTGGTCAAAGT 57.596 33.333 2.55 0.00 33.32 2.66
4168 4916 7.318141 AGATTGCACATAAGATTTGGTCAAAG 58.682 34.615 2.55 0.00 33.32 2.77
4169 4917 7.230849 AGATTGCACATAAGATTTGGTCAAA 57.769 32.000 0.00 0.00 34.46 2.69
4170 4918 6.839124 AGATTGCACATAAGATTTGGTCAA 57.161 33.333 0.00 0.00 0.00 3.18
4171 4919 7.936496 TTAGATTGCACATAAGATTTGGTCA 57.064 32.000 0.00 0.00 0.00 4.02
4172 4920 9.638239 TTTTTAGATTGCACATAAGATTTGGTC 57.362 29.630 0.00 0.00 0.00 4.02
4173 4921 9.643693 CTTTTTAGATTGCACATAAGATTTGGT 57.356 29.630 0.00 0.00 0.00 3.67
4174 4922 9.859427 TCTTTTTAGATTGCACATAAGATTTGG 57.141 29.630 0.00 0.00 0.00 3.28
4178 4926 9.559958 CGTTTCTTTTTAGATTGCACATAAGAT 57.440 29.630 0.00 0.00 0.00 2.40
4179 4927 8.020819 CCGTTTCTTTTTAGATTGCACATAAGA 58.979 33.333 0.00 0.00 0.00 2.10
4180 4928 8.020819 TCCGTTTCTTTTTAGATTGCACATAAG 58.979 33.333 0.00 0.00 0.00 1.73
4181 4929 7.877003 TCCGTTTCTTTTTAGATTGCACATAA 58.123 30.769 0.00 0.00 0.00 1.90
4182 4930 7.361713 CCTCCGTTTCTTTTTAGATTGCACATA 60.362 37.037 0.00 0.00 0.00 2.29
4183 4931 6.325919 TCCGTTTCTTTTTAGATTGCACAT 57.674 33.333 0.00 0.00 0.00 3.21
4184 4932 5.278266 CCTCCGTTTCTTTTTAGATTGCACA 60.278 40.000 0.00 0.00 0.00 4.57
4185 4933 5.154222 CCTCCGTTTCTTTTTAGATTGCAC 58.846 41.667 0.00 0.00 0.00 4.57
4186 4934 4.217550 CCCTCCGTTTCTTTTTAGATTGCA 59.782 41.667 0.00 0.00 0.00 4.08
4187 4935 4.457949 TCCCTCCGTTTCTTTTTAGATTGC 59.542 41.667 0.00 0.00 0.00 3.56
4188 4936 5.705905 ACTCCCTCCGTTTCTTTTTAGATTG 59.294 40.000 0.00 0.00 0.00 2.67
4189 4937 5.877491 ACTCCCTCCGTTTCTTTTTAGATT 58.123 37.500 0.00 0.00 0.00 2.40
4190 4938 5.500546 ACTCCCTCCGTTTCTTTTTAGAT 57.499 39.130 0.00 0.00 0.00 1.98
4191 4939 4.968971 ACTCCCTCCGTTTCTTTTTAGA 57.031 40.909 0.00 0.00 0.00 2.10
4192 4940 5.791666 AGTACTCCCTCCGTTTCTTTTTAG 58.208 41.667 0.00 0.00 0.00 1.85
4193 4941 5.813513 AGTACTCCCTCCGTTTCTTTTTA 57.186 39.130 0.00 0.00 0.00 1.52
4194 4942 4.701651 AGTACTCCCTCCGTTTCTTTTT 57.298 40.909 0.00 0.00 0.00 1.94
4195 4943 4.701651 AAGTACTCCCTCCGTTTCTTTT 57.298 40.909 0.00 0.00 0.00 2.27
4196 4944 4.701651 AAAGTACTCCCTCCGTTTCTTT 57.298 40.909 0.00 0.00 0.00 2.52
4197 4945 4.701651 AAAAGTACTCCCTCCGTTTCTT 57.298 40.909 0.00 0.00 0.00 2.52
4198 4946 4.701651 AAAAAGTACTCCCTCCGTTTCT 57.298 40.909 0.00 0.00 0.00 2.52
4243 4991 3.558931 ATATCGGTGGAGTGCAAATGA 57.441 42.857 0.00 0.00 0.00 2.57
4357 5117 2.752903 CCATTTACGGCCAGCTTTAAGT 59.247 45.455 2.24 0.00 0.00 2.24
4389 5149 1.138661 GAGAGAGTCCCAGGCAATCAG 59.861 57.143 0.00 0.00 0.00 2.90
4411 5171 2.203252 ACACCACACCAGCAGCAG 60.203 61.111 0.00 0.00 0.00 4.24
4412 5172 2.516695 CACACCACACCAGCAGCA 60.517 61.111 0.00 0.00 0.00 4.41
4413 5173 3.969802 GCACACCACACCAGCAGC 61.970 66.667 0.00 0.00 0.00 5.25
4414 5174 3.289834 GGCACACCACACCAGCAG 61.290 66.667 0.00 0.00 35.26 4.24
4415 5175 4.120755 TGGCACACCACACCAGCA 62.121 61.111 0.00 0.00 42.67 4.41
4628 5388 4.021719 TCTGTACCGGGTGAAAAAGTAGAG 60.022 45.833 10.66 0.00 0.00 2.43
4629 5389 3.896888 TCTGTACCGGGTGAAAAAGTAGA 59.103 43.478 10.66 0.00 0.00 2.59
4632 5392 2.809299 GCTCTGTACCGGGTGAAAAAGT 60.809 50.000 10.66 0.00 0.00 2.66
4633 5393 1.804748 GCTCTGTACCGGGTGAAAAAG 59.195 52.381 10.66 2.21 0.00 2.27
4634 5394 1.874739 CGCTCTGTACCGGGTGAAAAA 60.875 52.381 10.66 0.00 0.00 1.94
4638 5399 2.034532 TCGCTCTGTACCGGGTGA 59.965 61.111 10.66 0.00 0.00 4.02
4641 5402 3.528370 CCCTCGCTCTGTACCGGG 61.528 72.222 6.32 0.00 0.00 5.73
4690 5461 0.863799 CGATGCATCACCATCCTTCG 59.136 55.000 25.70 6.07 38.68 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.