Multiple sequence alignment - TraesCS4B01G185500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G185500 chr4B 100.000 5398 0 0 1 5398 404844598 404849995 0.000000e+00 9969.0
1 TraesCS4B01G185500 chr4B 96.040 909 34 2 2742 3650 510841953 510842859 0.000000e+00 1478.0
2 TraesCS4B01G185500 chr4B 84.722 648 78 17 1 644 624188506 624187876 3.550000e-176 628.0
3 TraesCS4B01G185500 chr4D 88.836 1684 105 39 3730 5398 324445689 324447304 0.000000e+00 1991.0
4 TraesCS4B01G185500 chr4D 90.689 1074 52 18 644 1691 324443413 324444464 0.000000e+00 1386.0
5 TraesCS4B01G185500 chr4D 89.436 833 54 16 1740 2549 324444485 324445306 0.000000e+00 1020.0
6 TraesCS4B01G185500 chr4D 94.737 57 2 1 2549 2604 324445325 324445381 2.680000e-13 87.9
7 TraesCS4B01G185500 chr4D 100.000 29 0 0 3680 3708 324445653 324445681 3.000000e-03 54.7
8 TraesCS4B01G185500 chr4A 88.231 1521 108 37 3680 5160 147019700 147018211 0.000000e+00 1751.0
9 TraesCS4B01G185500 chr4A 95.705 908 38 1 2737 3644 714278903 714277997 0.000000e+00 1459.0
10 TraesCS4B01G185500 chr4A 92.234 940 43 14 693 1627 147021694 147020780 0.000000e+00 1304.0
11 TraesCS4B01G185500 chr4A 86.965 1051 57 23 1742 2731 147020725 147019694 0.000000e+00 1109.0
12 TraesCS4B01G185500 chr4A 85.185 162 15 4 5238 5398 146958350 146958197 2.010000e-34 158.0
13 TraesCS4B01G185500 chr6B 96.597 911 30 1 2741 3650 132111729 132110819 0.000000e+00 1509.0
14 TraesCS4B01G185500 chr6B 95.060 911 43 2 2734 3643 283227500 283228409 0.000000e+00 1432.0
15 TraesCS4B01G185500 chr6B 81.098 656 106 12 1 644 571622163 571621514 4.820000e-140 508.0
16 TraesCS4B01G185500 chr6B 89.231 65 6 1 1701 1764 576861002 576860938 4.480000e-11 80.5
17 TraesCS4B01G185500 chr6B 90.909 55 3 2 1700 1753 541936681 541936734 7.500000e-09 73.1
18 TraesCS4B01G185500 chr3B 96.366 908 31 2 2743 3650 52192535 52193440 0.000000e+00 1493.0
19 TraesCS4B01G185500 chr3B 95.918 49 1 1 1701 1748 241678877 241678829 1.610000e-10 78.7
20 TraesCS4B01G185500 chr3B 100.000 31 0 0 3651 3681 354379706 354379736 2.100000e-04 58.4
21 TraesCS4B01G185500 chr1B 96.171 914 34 1 2737 3650 566121356 566122268 0.000000e+00 1493.0
22 TraesCS4B01G185500 chr1B 95.531 895 40 0 2743 3637 100634306 100633412 0.000000e+00 1432.0
23 TraesCS4B01G185500 chr1B 82.879 660 90 16 1 644 458013273 458013925 6.070000e-159 571.0
24 TraesCS4B01G185500 chr2B 96.115 901 34 1 2742 3642 768561546 768560647 0.000000e+00 1469.0
25 TraesCS4B01G185500 chr2D 95.801 905 33 3 2744 3643 610245114 610246018 0.000000e+00 1456.0
26 TraesCS4B01G185500 chr2D 85.106 658 68 14 2 644 575765380 575766022 0.000000e+00 645.0
27 TraesCS4B01G185500 chr2A 88.361 653 54 14 1 644 105523927 105523288 0.000000e+00 765.0
28 TraesCS4B01G185500 chr2A 90.000 60 2 4 1701 1756 729674145 729674204 2.090000e-09 75.0
29 TraesCS4B01G185500 chr2A 87.692 65 5 3 1701 1764 12129663 12129601 7.500000e-09 73.1
30 TraesCS4B01G185500 chrUn 85.736 659 61 18 2 644 287227740 287227099 0.000000e+00 665.0
31 TraesCS4B01G185500 chrUn 85.736 659 61 18 2 644 287479638 287478997 0.000000e+00 665.0
32 TraesCS4B01G185500 chrUn 85.605 653 73 13 2 644 301168439 301167798 0.000000e+00 665.0
33 TraesCS4B01G185500 chrUn 85.736 659 61 18 2 644 323539615 323540256 0.000000e+00 665.0
34 TraesCS4B01G185500 chrUn 90.909 55 3 2 1701 1753 197752438 197752384 7.500000e-09 73.1
35 TraesCS4B01G185500 chr7D 85.236 657 75 11 2 648 39670758 39670114 0.000000e+00 656.0
36 TraesCS4B01G185500 chr7D 87.500 64 3 5 1701 1759 64381253 64381190 9.700000e-08 69.4
37 TraesCS4B01G185500 chr5B 85.557 637 64 17 2 623 696200305 696200928 4.560000e-180 641.0
38 TraesCS4B01G185500 chr3D 78.475 590 84 32 81 643 569544233 569544806 4.000000e-91 346.0
39 TraesCS4B01G185500 chr3D 95.918 49 1 1 1701 1748 427225790 427225742 1.610000e-10 78.7
40 TraesCS4B01G185500 chr6D 81.701 388 57 10 266 644 382208483 382208101 1.460000e-80 311.0
41 TraesCS4B01G185500 chr1D 89.831 59 4 2 1701 1758 121317055 121316998 2.090000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G185500 chr4B 404844598 404849995 5397 False 9969.00 9969 100.000000 1 5398 1 chr4B.!!$F1 5397
1 TraesCS4B01G185500 chr4B 510841953 510842859 906 False 1478.00 1478 96.040000 2742 3650 1 chr4B.!!$F2 908
2 TraesCS4B01G185500 chr4B 624187876 624188506 630 True 628.00 628 84.722000 1 644 1 chr4B.!!$R1 643
3 TraesCS4B01G185500 chr4D 324443413 324447304 3891 False 907.92 1991 92.739600 644 5398 5 chr4D.!!$F1 4754
4 TraesCS4B01G185500 chr4A 714277997 714278903 906 True 1459.00 1459 95.705000 2737 3644 1 chr4A.!!$R2 907
5 TraesCS4B01G185500 chr4A 147018211 147021694 3483 True 1388.00 1751 89.143333 693 5160 3 chr4A.!!$R3 4467
6 TraesCS4B01G185500 chr6B 132110819 132111729 910 True 1509.00 1509 96.597000 2741 3650 1 chr6B.!!$R1 909
7 TraesCS4B01G185500 chr6B 283227500 283228409 909 False 1432.00 1432 95.060000 2734 3643 1 chr6B.!!$F1 909
8 TraesCS4B01G185500 chr6B 571621514 571622163 649 True 508.00 508 81.098000 1 644 1 chr6B.!!$R2 643
9 TraesCS4B01G185500 chr3B 52192535 52193440 905 False 1493.00 1493 96.366000 2743 3650 1 chr3B.!!$F1 907
10 TraesCS4B01G185500 chr1B 566121356 566122268 912 False 1493.00 1493 96.171000 2737 3650 1 chr1B.!!$F2 913
11 TraesCS4B01G185500 chr1B 100633412 100634306 894 True 1432.00 1432 95.531000 2743 3637 1 chr1B.!!$R1 894
12 TraesCS4B01G185500 chr1B 458013273 458013925 652 False 571.00 571 82.879000 1 644 1 chr1B.!!$F1 643
13 TraesCS4B01G185500 chr2B 768560647 768561546 899 True 1469.00 1469 96.115000 2742 3642 1 chr2B.!!$R1 900
14 TraesCS4B01G185500 chr2D 610245114 610246018 904 False 1456.00 1456 95.801000 2744 3643 1 chr2D.!!$F2 899
15 TraesCS4B01G185500 chr2D 575765380 575766022 642 False 645.00 645 85.106000 2 644 1 chr2D.!!$F1 642
16 TraesCS4B01G185500 chr2A 105523288 105523927 639 True 765.00 765 88.361000 1 644 1 chr2A.!!$R2 643
17 TraesCS4B01G185500 chrUn 287227099 287227740 641 True 665.00 665 85.736000 2 644 1 chrUn.!!$R2 642
18 TraesCS4B01G185500 chrUn 287478997 287479638 641 True 665.00 665 85.736000 2 644 1 chrUn.!!$R3 642
19 TraesCS4B01G185500 chrUn 301167798 301168439 641 True 665.00 665 85.605000 2 644 1 chrUn.!!$R4 642
20 TraesCS4B01G185500 chrUn 323539615 323540256 641 False 665.00 665 85.736000 2 644 1 chrUn.!!$F1 642
21 TraesCS4B01G185500 chr7D 39670114 39670758 644 True 656.00 656 85.236000 2 648 1 chr7D.!!$R1 646
22 TraesCS4B01G185500 chr5B 696200305 696200928 623 False 641.00 641 85.557000 2 623 1 chr5B.!!$F1 621
23 TraesCS4B01G185500 chr3D 569544233 569544806 573 False 346.00 346 78.475000 81 643 1 chr3D.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 536 0.041312 GCTAGTTGTTGGTGTGCGTG 60.041 55.0 0.00 0.00 0.00 5.34 F
538 551 0.317770 GCGTGTGTGTGTTGGATTGG 60.318 55.0 0.00 0.00 0.00 3.16 F
542 555 0.318955 GTGTGTGTTGGATTGGCTGC 60.319 55.0 0.00 0.00 0.00 5.25 F
572 585 0.324275 ATTATGCAAAGGCCGGGTGT 60.324 50.0 2.18 0.00 40.13 4.16 F
573 586 0.328592 TTATGCAAAGGCCGGGTGTA 59.671 50.0 2.18 0.00 40.13 2.90 F
574 587 0.548989 TATGCAAAGGCCGGGTGTAT 59.451 50.0 2.18 4.63 40.13 2.29 F
1656 1699 0.744874 TGATACGCTGTAGTGCTCCC 59.255 55.0 0.00 0.00 0.00 4.30 F
2099 2173 0.924090 CGTGCGGCTCAAGAATCTAC 59.076 55.0 0.00 0.00 0.00 2.59 F
3650 3922 0.600782 GGACGTGCGGTTAGGAAACA 60.601 55.0 0.00 0.00 37.34 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1638 1681 0.032267 GGGGAGCACTACAGCGTATC 59.968 60.0 0.00 0.00 40.15 2.24 R
1802 1845 0.393808 TCTCAATGGTTAAGGCCGCC 60.394 55.0 0.00 0.00 0.00 6.13 R
2510 2608 0.461163 CATGGCCATCGACGTGGTTA 60.461 55.0 17.61 7.42 41.47 2.85 R
2552 2650 0.379316 GCGTTCACGAACCCACTTTT 59.621 50.0 2.87 0.00 43.02 2.27 R
2553 2651 0.463116 AGCGTTCACGAACCCACTTT 60.463 50.0 2.87 0.00 43.02 2.66 R
2554 2652 0.878961 GAGCGTTCACGAACCCACTT 60.879 55.0 2.87 0.00 43.02 3.16 R
3485 3756 0.036294 GGTCTGTTCACTAGGTGGGC 60.036 60.0 0.00 0.00 33.87 5.36 R
3981 4325 0.110486 AAGGAAACGGCCAGATGTGT 59.890 50.0 2.24 0.00 0.00 3.72 R
5346 5737 0.478507 AGGAGGTTTGAGTTGGGTGG 59.521 55.0 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.136828 TAAGTTGTGGAGTGGTGGCT 58.863 50.000 0.00 0.00 0.00 4.75
82 83 1.678101 GAGTGGTGGCTATCCAATTGC 59.322 52.381 0.00 0.00 45.53 3.56
88 89 0.672342 GGCTATCCAATTGCAGCTGG 59.328 55.000 17.12 9.37 34.41 4.85
96 97 1.276989 CAATTGCAGCTGGTGGGATTT 59.723 47.619 17.12 0.00 0.00 2.17
99 100 0.178967 TGCAGCTGGTGGGATTTTGA 60.179 50.000 17.12 0.00 0.00 2.69
136 137 5.620206 ACAACACTTGTATGACTTGGATGA 58.380 37.500 0.00 0.00 43.27 2.92
189 192 3.519913 GGGATGAAAACCTAGGTCAGACT 59.480 47.826 16.64 0.00 0.00 3.24
263 268 2.019984 AGGATTGCTCGGATTTGCTTC 58.980 47.619 0.00 0.00 0.00 3.86
295 300 5.932303 TCTTCAGGGTGAAAACTTAGATTCG 59.068 40.000 0.00 0.00 35.73 3.34
336 343 2.708059 GACGACGACGCTTGAGTGC 61.708 63.158 7.30 0.00 43.96 4.40
350 357 4.785453 GTGCCGCTCCCTTCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
359 366 0.401395 TCCCTTCCTGGAGGTGTTGT 60.401 55.000 5.02 0.00 38.35 3.32
374 381 3.253432 GGTGTTGTTGTTGAAGATCCTCC 59.747 47.826 0.00 0.00 0.00 4.30
375 382 3.882888 GTGTTGTTGTTGAAGATCCTCCA 59.117 43.478 0.00 0.00 0.00 3.86
383 392 8.493607 TGTTGTTGAAGATCCTCCATATCATTA 58.506 33.333 0.00 0.00 0.00 1.90
402 415 7.060383 TCATTATGGTGTCAATGGTTTTTGT 57.940 32.000 0.00 0.00 33.77 2.83
404 417 2.898705 TGGTGTCAATGGTTTTTGTGC 58.101 42.857 0.00 0.00 0.00 4.57
405 418 1.857837 GGTGTCAATGGTTTTTGTGCG 59.142 47.619 0.00 0.00 0.00 5.34
406 419 1.857837 GTGTCAATGGTTTTTGTGCGG 59.142 47.619 0.00 0.00 0.00 5.69
409 422 3.570125 TGTCAATGGTTTTTGTGCGGATA 59.430 39.130 0.00 0.00 0.00 2.59
410 423 4.219507 TGTCAATGGTTTTTGTGCGGATAT 59.780 37.500 0.00 0.00 0.00 1.63
411 424 5.416013 TGTCAATGGTTTTTGTGCGGATATA 59.584 36.000 0.00 0.00 0.00 0.86
412 425 6.071896 TGTCAATGGTTTTTGTGCGGATATAA 60.072 34.615 0.00 0.00 0.00 0.98
418 431 5.353123 GGTTTTTGTGCGGATATAAGTCTCA 59.647 40.000 0.00 0.00 0.00 3.27
419 432 6.038271 GGTTTTTGTGCGGATATAAGTCTCAT 59.962 38.462 0.00 0.00 0.00 2.90
441 454 6.873605 TCATTTGTAGTTTGTCGATCACTGAT 59.126 34.615 0.00 0.00 0.00 2.90
442 455 7.387673 TCATTTGTAGTTTGTCGATCACTGATT 59.612 33.333 0.00 0.00 0.00 2.57
447 460 6.414408 AGTTTGTCGATCACTGATTTGATC 57.586 37.500 3.45 3.45 45.85 2.92
455 468 5.983475 GATCACTGATTTGATCGCTTTAGG 58.017 41.667 0.00 0.00 41.88 2.69
456 469 3.623060 TCACTGATTTGATCGCTTTAGGC 59.377 43.478 0.00 0.00 37.64 3.93
457 470 3.624861 CACTGATTTGATCGCTTTAGGCT 59.375 43.478 0.00 0.00 39.13 4.58
459 472 4.333926 ACTGATTTGATCGCTTTAGGCTTC 59.666 41.667 0.00 0.00 39.13 3.86
462 475 4.946784 TTTGATCGCTTTAGGCTTCTTC 57.053 40.909 0.00 0.00 39.13 2.87
463 476 3.895232 TGATCGCTTTAGGCTTCTTCT 57.105 42.857 0.00 0.00 39.13 2.85
464 477 4.207891 TGATCGCTTTAGGCTTCTTCTT 57.792 40.909 0.00 0.00 39.13 2.52
490 503 0.871722 TTTTTCCTCGCCGACACATG 59.128 50.000 0.00 0.00 0.00 3.21
492 505 2.107041 TTTCCTCGCCGACACATGGT 62.107 55.000 0.00 0.00 0.00 3.55
493 506 2.501223 TTCCTCGCCGACACATGGTC 62.501 60.000 0.00 0.79 43.36 4.02
494 507 2.573869 CTCGCCGACACATGGTCT 59.426 61.111 11.12 0.00 44.68 3.85
495 508 1.079819 CTCGCCGACACATGGTCTT 60.080 57.895 11.12 0.00 44.68 3.01
496 509 0.172578 CTCGCCGACACATGGTCTTA 59.827 55.000 11.12 0.00 44.68 2.10
497 510 0.821517 TCGCCGACACATGGTCTTAT 59.178 50.000 11.12 0.00 44.68 1.73
498 511 0.930310 CGCCGACACATGGTCTTATG 59.070 55.000 11.12 0.00 44.68 1.90
499 512 1.470805 CGCCGACACATGGTCTTATGA 60.471 52.381 11.12 0.00 44.68 2.15
500 513 1.933853 GCCGACACATGGTCTTATGAC 59.066 52.381 11.12 0.10 44.68 3.06
501 514 2.418746 GCCGACACATGGTCTTATGACT 60.419 50.000 8.51 0.00 44.68 3.41
502 515 3.861840 CCGACACATGGTCTTATGACTT 58.138 45.455 8.51 0.00 44.68 3.01
503 516 4.253685 CCGACACATGGTCTTATGACTTT 58.746 43.478 8.51 0.00 44.68 2.66
504 517 4.093408 CCGACACATGGTCTTATGACTTTG 59.907 45.833 8.51 8.65 44.68 2.77
505 518 4.436050 CGACACATGGTCTTATGACTTTGC 60.436 45.833 8.51 0.00 44.68 3.68
506 519 4.655963 ACACATGGTCTTATGACTTTGCT 58.344 39.130 8.51 0.00 42.54 3.91
507 520 5.804639 ACACATGGTCTTATGACTTTGCTA 58.195 37.500 8.51 0.00 42.54 3.49
508 521 5.877012 ACACATGGTCTTATGACTTTGCTAG 59.123 40.000 8.51 0.00 42.54 3.42
509 522 5.877012 CACATGGTCTTATGACTTTGCTAGT 59.123 40.000 8.51 0.00 42.54 2.57
510 523 6.372659 CACATGGTCTTATGACTTTGCTAGTT 59.627 38.462 8.51 0.00 42.54 2.24
511 524 6.372659 ACATGGTCTTATGACTTTGCTAGTTG 59.627 38.462 8.51 0.00 42.54 3.16
512 525 5.865085 TGGTCTTATGACTTTGCTAGTTGT 58.135 37.500 8.51 0.00 42.54 3.32
513 526 6.296026 TGGTCTTATGACTTTGCTAGTTGTT 58.704 36.000 8.51 0.00 42.54 2.83
514 527 6.204688 TGGTCTTATGACTTTGCTAGTTGTTG 59.795 38.462 8.51 0.00 42.54 3.33
515 528 6.348540 GGTCTTATGACTTTGCTAGTTGTTGG 60.349 42.308 8.51 0.00 42.54 3.77
516 529 6.204882 GTCTTATGACTTTGCTAGTTGTTGGT 59.795 38.462 1.60 0.00 39.94 3.67
517 530 4.836125 ATGACTTTGCTAGTTGTTGGTG 57.164 40.909 0.00 0.00 37.17 4.17
518 531 3.616219 TGACTTTGCTAGTTGTTGGTGT 58.384 40.909 0.00 0.00 37.17 4.16
519 532 3.376859 TGACTTTGCTAGTTGTTGGTGTG 59.623 43.478 0.00 0.00 37.17 3.82
520 533 2.099098 ACTTTGCTAGTTGTTGGTGTGC 59.901 45.455 0.00 0.00 31.29 4.57
521 534 0.660488 TTGCTAGTTGTTGGTGTGCG 59.340 50.000 0.00 0.00 0.00 5.34
522 535 0.462937 TGCTAGTTGTTGGTGTGCGT 60.463 50.000 0.00 0.00 0.00 5.24
523 536 0.041312 GCTAGTTGTTGGTGTGCGTG 60.041 55.000 0.00 0.00 0.00 5.34
524 537 1.295792 CTAGTTGTTGGTGTGCGTGT 58.704 50.000 0.00 0.00 0.00 4.49
525 538 1.003972 CTAGTTGTTGGTGTGCGTGTG 60.004 52.381 0.00 0.00 0.00 3.82
526 539 0.958382 AGTTGTTGGTGTGCGTGTGT 60.958 50.000 0.00 0.00 0.00 3.72
527 540 0.796491 GTTGTTGGTGTGCGTGTGTG 60.796 55.000 0.00 0.00 0.00 3.82
528 541 1.237954 TTGTTGGTGTGCGTGTGTGT 61.238 50.000 0.00 0.00 0.00 3.72
529 542 1.226267 GTTGGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
530 543 1.672682 TTGGTGTGCGTGTGTGTGT 60.673 52.632 0.00 0.00 0.00 3.72
531 544 1.237954 TTGGTGTGCGTGTGTGTGTT 61.238 50.000 0.00 0.00 0.00 3.32
532 545 1.226267 GGTGTGCGTGTGTGTGTTG 60.226 57.895 0.00 0.00 0.00 3.33
533 546 1.226267 GTGTGCGTGTGTGTGTTGG 60.226 57.895 0.00 0.00 0.00 3.77
534 547 1.376037 TGTGCGTGTGTGTGTTGGA 60.376 52.632 0.00 0.00 0.00 3.53
535 548 0.746204 TGTGCGTGTGTGTGTTGGAT 60.746 50.000 0.00 0.00 0.00 3.41
536 549 0.380378 GTGCGTGTGTGTGTTGGATT 59.620 50.000 0.00 0.00 0.00 3.01
537 550 0.380024 TGCGTGTGTGTGTTGGATTG 59.620 50.000 0.00 0.00 0.00 2.67
538 551 0.317770 GCGTGTGTGTGTTGGATTGG 60.318 55.000 0.00 0.00 0.00 3.16
539 552 0.317770 CGTGTGTGTGTTGGATTGGC 60.318 55.000 0.00 0.00 0.00 4.52
540 553 1.032014 GTGTGTGTGTTGGATTGGCT 58.968 50.000 0.00 0.00 0.00 4.75
541 554 1.031235 TGTGTGTGTTGGATTGGCTG 58.969 50.000 0.00 0.00 0.00 4.85
542 555 0.318955 GTGTGTGTTGGATTGGCTGC 60.319 55.000 0.00 0.00 0.00 5.25
543 556 1.081242 GTGTGTTGGATTGGCTGCG 60.081 57.895 0.00 0.00 0.00 5.18
544 557 1.528076 TGTGTTGGATTGGCTGCGT 60.528 52.632 0.00 0.00 0.00 5.24
545 558 1.081242 GTGTTGGATTGGCTGCGTG 60.081 57.895 0.00 0.00 0.00 5.34
546 559 2.126346 GTTGGATTGGCTGCGTGC 60.126 61.111 0.00 0.00 41.94 5.34
547 560 2.596923 TTGGATTGGCTGCGTGCA 60.597 55.556 3.97 0.00 45.15 4.57
548 561 1.978080 TTGGATTGGCTGCGTGCAT 60.978 52.632 0.00 0.00 45.15 3.96
549 562 1.936436 TTGGATTGGCTGCGTGCATC 61.936 55.000 0.00 0.00 45.15 3.91
550 563 2.410469 GATTGGCTGCGTGCATCC 59.590 61.111 7.75 7.75 45.15 3.51
551 564 2.044650 ATTGGCTGCGTGCATCCT 60.045 55.556 15.04 0.00 45.15 3.24
552 565 0.815213 GATTGGCTGCGTGCATCCTA 60.815 55.000 15.04 8.60 45.15 2.94
553 566 0.394216 ATTGGCTGCGTGCATCCTAA 60.394 50.000 15.04 8.61 45.15 2.69
554 567 0.394216 TTGGCTGCGTGCATCCTAAT 60.394 50.000 15.04 0.00 45.15 1.73
555 568 0.394216 TGGCTGCGTGCATCCTAATT 60.394 50.000 15.04 0.00 45.15 1.40
556 569 1.134250 TGGCTGCGTGCATCCTAATTA 60.134 47.619 15.04 0.00 45.15 1.40
557 570 2.154462 GGCTGCGTGCATCCTAATTAT 58.846 47.619 7.45 0.00 45.15 1.28
558 571 2.095567 GGCTGCGTGCATCCTAATTATG 60.096 50.000 7.45 0.00 45.15 1.90
567 580 4.164822 CATCCTAATTATGCAAAGGCCG 57.835 45.455 0.00 0.00 40.13 6.13
568 581 2.582052 TCCTAATTATGCAAAGGCCGG 58.418 47.619 0.00 0.00 40.13 6.13
569 582 1.613437 CCTAATTATGCAAAGGCCGGG 59.387 52.381 2.18 0.00 40.13 5.73
570 583 2.306847 CTAATTATGCAAAGGCCGGGT 58.693 47.619 2.18 0.00 40.13 5.28
571 584 0.823460 AATTATGCAAAGGCCGGGTG 59.177 50.000 2.18 0.00 40.13 4.61
572 585 0.324275 ATTATGCAAAGGCCGGGTGT 60.324 50.000 2.18 0.00 40.13 4.16
573 586 0.328592 TTATGCAAAGGCCGGGTGTA 59.671 50.000 2.18 0.00 40.13 2.90
574 587 0.548989 TATGCAAAGGCCGGGTGTAT 59.451 50.000 2.18 4.63 40.13 2.29
575 588 1.037030 ATGCAAAGGCCGGGTGTATG 61.037 55.000 2.18 0.00 40.13 2.39
576 589 3.063743 GCAAAGGCCGGGTGTATGC 62.064 63.158 2.18 0.00 0.00 3.14
577 590 1.378514 CAAAGGCCGGGTGTATGCT 60.379 57.895 2.18 0.00 0.00 3.79
578 591 1.077716 AAAGGCCGGGTGTATGCTC 60.078 57.895 2.18 0.00 0.00 4.26
579 592 1.847798 AAAGGCCGGGTGTATGCTCA 61.848 55.000 2.18 0.00 0.00 4.26
580 593 1.635817 AAGGCCGGGTGTATGCTCAT 61.636 55.000 2.18 0.00 0.00 2.90
581 594 1.152963 GGCCGGGTGTATGCTCATT 60.153 57.895 2.18 0.00 0.00 2.57
582 595 1.447317 GGCCGGGTGTATGCTCATTG 61.447 60.000 2.18 0.00 0.00 2.82
583 596 0.748005 GCCGGGTGTATGCTCATTGT 60.748 55.000 2.18 0.00 0.00 2.71
584 597 1.474320 GCCGGGTGTATGCTCATTGTA 60.474 52.381 2.18 0.00 0.00 2.41
585 598 2.810400 GCCGGGTGTATGCTCATTGTAT 60.810 50.000 2.18 0.00 0.00 2.29
586 599 3.476552 CCGGGTGTATGCTCATTGTATT 58.523 45.455 0.00 0.00 0.00 1.89
587 600 4.637276 CCGGGTGTATGCTCATTGTATTA 58.363 43.478 0.00 0.00 0.00 0.98
588 601 5.245531 CCGGGTGTATGCTCATTGTATTAT 58.754 41.667 0.00 0.00 0.00 1.28
589 602 5.122239 CCGGGTGTATGCTCATTGTATTATG 59.878 44.000 0.00 0.00 0.00 1.90
590 603 5.700832 CGGGTGTATGCTCATTGTATTATGT 59.299 40.000 0.00 0.00 0.00 2.29
591 604 6.871492 CGGGTGTATGCTCATTGTATTATGTA 59.129 38.462 0.00 0.00 0.00 2.29
592 605 7.549134 CGGGTGTATGCTCATTGTATTATGTAT 59.451 37.037 0.00 0.00 0.00 2.29
593 606 9.231297 GGGTGTATGCTCATTGTATTATGTATT 57.769 33.333 0.00 0.00 0.00 1.89
606 619 9.494271 TTGTATTATGTATTCTCTTGATGCTCC 57.506 33.333 0.00 0.00 0.00 4.70
607 620 8.650490 TGTATTATGTATTCTCTTGATGCTCCA 58.350 33.333 0.00 0.00 0.00 3.86
608 621 9.664332 GTATTATGTATTCTCTTGATGCTCCAT 57.336 33.333 0.00 0.00 0.00 3.41
610 623 8.985315 TTATGTATTCTCTTGATGCTCCATTT 57.015 30.769 0.00 0.00 0.00 2.32
611 624 7.893124 ATGTATTCTCTTGATGCTCCATTTT 57.107 32.000 0.00 0.00 0.00 1.82
612 625 7.092137 TGTATTCTCTTGATGCTCCATTTTG 57.908 36.000 0.00 0.00 0.00 2.44
613 626 6.885918 TGTATTCTCTTGATGCTCCATTTTGA 59.114 34.615 0.00 0.00 0.00 2.69
614 627 5.892160 TTCTCTTGATGCTCCATTTTGAG 57.108 39.130 0.00 0.00 35.40 3.02
628 641 7.903995 TCCATTTTGAGCCAATAAAATTCAC 57.096 32.000 0.00 0.00 35.07 3.18
629 642 6.878389 TCCATTTTGAGCCAATAAAATTCACC 59.122 34.615 0.00 0.00 35.07 4.02
630 643 6.093909 CCATTTTGAGCCAATAAAATTCACCC 59.906 38.462 0.00 0.00 35.07 4.61
631 644 6.432403 TTTTGAGCCAATAAAATTCACCCT 57.568 33.333 0.00 0.00 0.00 4.34
632 645 6.432403 TTTGAGCCAATAAAATTCACCCTT 57.568 33.333 0.00 0.00 0.00 3.95
633 646 6.432403 TTGAGCCAATAAAATTCACCCTTT 57.568 33.333 0.00 0.00 0.00 3.11
634 647 6.432403 TGAGCCAATAAAATTCACCCTTTT 57.568 33.333 0.00 0.00 0.00 2.27
635 648 6.463360 TGAGCCAATAAAATTCACCCTTTTC 58.537 36.000 0.00 0.00 0.00 2.29
636 649 5.804639 AGCCAATAAAATTCACCCTTTTCC 58.195 37.500 0.00 0.00 0.00 3.13
637 650 4.629634 GCCAATAAAATTCACCCTTTTCCG 59.370 41.667 0.00 0.00 0.00 4.30
638 651 5.567823 GCCAATAAAATTCACCCTTTTCCGA 60.568 40.000 0.00 0.00 0.00 4.55
639 652 6.459923 CCAATAAAATTCACCCTTTTCCGAA 58.540 36.000 0.00 0.00 0.00 4.30
640 653 6.931840 CCAATAAAATTCACCCTTTTCCGAAA 59.068 34.615 0.00 0.00 0.00 3.46
641 654 7.442666 CCAATAAAATTCACCCTTTTCCGAAAA 59.557 33.333 6.16 6.16 0.00 2.29
642 655 8.831550 CAATAAAATTCACCCTTTTCCGAAAAA 58.168 29.630 7.67 0.00 33.42 1.94
661 674 1.663695 AATACACCGCTGTATGTGCC 58.336 50.000 4.17 0.00 41.92 5.01
664 677 2.434185 ACCGCTGTATGTGCCACG 60.434 61.111 0.00 0.00 0.00 4.94
675 688 4.690719 TGCCACGGGTAGCCGTTG 62.691 66.667 34.91 31.06 44.38 4.10
677 690 2.582436 CCACGGGTAGCCGTTGAT 59.418 61.111 34.91 12.55 44.38 2.57
688 701 2.417719 AGCCGTTGATTTGAGAGTGTC 58.582 47.619 0.00 0.00 0.00 3.67
691 704 2.663602 CCGTTGATTTGAGAGTGTCTCG 59.336 50.000 0.00 0.00 46.25 4.04
797 815 1.263217 CGTTGTGCACCAGGTCTTTAC 59.737 52.381 15.69 0.00 0.00 2.01
848 866 1.305633 CCTCACCCCTCTCTGCTCA 60.306 63.158 0.00 0.00 0.00 4.26
859 877 3.058450 CTCTCTGCTCACACTTGACTTG 58.942 50.000 0.00 0.00 0.00 3.16
889 907 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
890 908 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
891 909 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1041 1069 5.309323 TCTCCATCTTGCCGTTTATTTTG 57.691 39.130 0.00 0.00 0.00 2.44
1062 1090 0.790814 GTCGTAGCCAAGCACTGAAC 59.209 55.000 0.00 0.00 0.00 3.18
1260 1288 9.611284 TCGATGATTACAATTTTCAAGTTCTTG 57.389 29.630 6.24 6.24 0.00 3.02
1298 1326 2.753966 CCCCGCGACTTGATTGCAG 61.754 63.158 8.23 0.00 37.61 4.41
1326 1354 4.809070 GGCTGAGCCTTCTGTTGT 57.191 55.556 17.96 0.00 46.69 3.32
1369 1408 6.532988 AGTTGGTAACTTGGTAGAGAGATC 57.467 41.667 0.00 0.00 39.04 2.75
1436 1475 5.066893 GCCATTGATGCATAACAGAGAAAGA 59.933 40.000 0.00 0.00 0.00 2.52
1481 1521 1.077005 TGGGAAACAGGGCTTGCTTAT 59.923 47.619 0.00 0.00 0.00 1.73
1507 1550 5.515106 AGCTCTTCTCAGTCTGTATTACCT 58.485 41.667 0.00 0.00 0.00 3.08
1576 1619 5.010213 AGAGTAAGCCCGTCAATTATCTCTC 59.990 44.000 0.00 0.00 0.00 3.20
1592 1635 2.092375 TCTCTCTTCTCCCATGAGCGTA 60.092 50.000 0.00 0.00 38.58 4.42
1623 1666 5.902613 TTGGCTATGTCATTTCTCCTTTG 57.097 39.130 0.00 0.00 0.00 2.77
1629 1672 7.329471 GGCTATGTCATTTCTCCTTTGTTTTTC 59.671 37.037 0.00 0.00 0.00 2.29
1632 1675 7.169158 TGTCATTTCTCCTTTGTTTTTCTGT 57.831 32.000 0.00 0.00 0.00 3.41
1636 1679 8.310382 TCATTTCTCCTTTGTTTTTCTGTTTGA 58.690 29.630 0.00 0.00 0.00 2.69
1637 1680 9.101655 CATTTCTCCTTTGTTTTTCTGTTTGAT 57.898 29.630 0.00 0.00 0.00 2.57
1638 1681 8.477984 TTTCTCCTTTGTTTTTCTGTTTGATG 57.522 30.769 0.00 0.00 0.00 3.07
1639 1682 7.403312 TCTCCTTTGTTTTTCTGTTTGATGA 57.597 32.000 0.00 0.00 0.00 2.92
1640 1683 8.010733 TCTCCTTTGTTTTTCTGTTTGATGAT 57.989 30.769 0.00 0.00 0.00 2.45
1641 1684 9.130661 TCTCCTTTGTTTTTCTGTTTGATGATA 57.869 29.630 0.00 0.00 0.00 2.15
1642 1685 9.185192 CTCCTTTGTTTTTCTGTTTGATGATAC 57.815 33.333 0.00 0.00 0.00 2.24
1643 1686 7.860373 TCCTTTGTTTTTCTGTTTGATGATACG 59.140 33.333 0.00 0.00 0.00 3.06
1654 1697 3.355626 TGATGATACGCTGTAGTGCTC 57.644 47.619 0.00 0.00 0.00 4.26
1656 1699 0.744874 TGATACGCTGTAGTGCTCCC 59.255 55.000 0.00 0.00 0.00 4.30
1658 1701 1.400530 ATACGCTGTAGTGCTCCCCC 61.401 60.000 0.00 0.00 0.00 5.40
1660 1703 2.269241 GCTGTAGTGCTCCCCCAC 59.731 66.667 0.00 0.00 35.98 4.61
1696 1739 4.124238 TGGTTAACTTGTCAGTTTCCTCG 58.876 43.478 5.42 0.00 40.66 4.63
1700 1743 3.009301 ACTTGTCAGTTTCCTCGTACG 57.991 47.619 9.53 9.53 0.00 3.67
1701 1744 2.360165 ACTTGTCAGTTTCCTCGTACGT 59.640 45.455 16.05 0.00 0.00 3.57
1702 1745 2.410785 TGTCAGTTTCCTCGTACGTG 57.589 50.000 16.05 13.00 0.00 4.49
1703 1746 1.677576 TGTCAGTTTCCTCGTACGTGT 59.322 47.619 16.05 0.00 0.00 4.49
1705 1748 3.058708 TGTCAGTTTCCTCGTACGTGTAG 60.059 47.826 16.05 5.27 0.00 2.74
1706 1749 3.058639 GTCAGTTTCCTCGTACGTGTAGT 60.059 47.826 16.05 1.03 0.00 2.73
1707 1750 3.058708 TCAGTTTCCTCGTACGTGTAGTG 60.059 47.826 16.05 12.43 0.00 2.74
1708 1751 2.880890 AGTTTCCTCGTACGTGTAGTGT 59.119 45.455 16.05 0.00 0.00 3.55
1709 1752 3.058639 AGTTTCCTCGTACGTGTAGTGTC 60.059 47.826 16.05 1.17 0.00 3.67
1710 1753 2.168326 TCCTCGTACGTGTAGTGTCA 57.832 50.000 16.05 0.00 0.00 3.58
1712 1755 2.877786 TCCTCGTACGTGTAGTGTCAAA 59.122 45.455 16.05 0.00 0.00 2.69
1713 1756 3.314913 TCCTCGTACGTGTAGTGTCAAAA 59.685 43.478 16.05 0.00 0.00 2.44
1714 1757 4.043750 CCTCGTACGTGTAGTGTCAAAAA 58.956 43.478 16.05 0.00 0.00 1.94
1715 1758 4.085415 CCTCGTACGTGTAGTGTCAAAAAC 60.085 45.833 16.05 0.00 0.00 2.43
1716 1759 3.481749 TCGTACGTGTAGTGTCAAAAACG 59.518 43.478 16.05 0.00 37.09 3.60
1717 1760 2.724744 ACGTGTAGTGTCAAAAACGC 57.275 45.000 0.00 0.00 38.74 4.84
1719 1762 2.283351 ACGTGTAGTGTCAAAAACGCTC 59.717 45.455 0.00 0.00 45.69 5.03
1720 1763 2.538449 CGTGTAGTGTCAAAAACGCTCT 59.462 45.455 0.00 0.00 45.69 4.09
1721 1764 3.000925 CGTGTAGTGTCAAAAACGCTCTT 59.999 43.478 0.00 0.00 45.69 2.85
1722 1765 4.207635 CGTGTAGTGTCAAAAACGCTCTTA 59.792 41.667 0.00 0.00 45.69 2.10
1723 1766 5.107607 CGTGTAGTGTCAAAAACGCTCTTAT 60.108 40.000 0.00 0.00 45.69 1.73
1724 1767 6.088483 CGTGTAGTGTCAAAAACGCTCTTATA 59.912 38.462 0.00 0.00 45.69 0.98
1725 1768 7.201410 CGTGTAGTGTCAAAAACGCTCTTATAT 60.201 37.037 0.00 0.00 45.69 0.86
1726 1769 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
1727 1770 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
1730 1773 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
1731 1774 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
1732 1775 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
1733 1776 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
1734 1777 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
1735 1778 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
1736 1779 5.359194 ACGCTCTTATATTATGGGATGGG 57.641 43.478 0.00 0.00 0.00 4.00
1737 1780 4.164221 ACGCTCTTATATTATGGGATGGGG 59.836 45.833 0.00 0.00 0.00 4.96
1738 1781 4.444876 CGCTCTTATATTATGGGATGGGGG 60.445 50.000 0.00 0.00 0.00 5.40
1747 1790 2.295269 TGGGATGGGGGAGTATTTGA 57.705 50.000 0.00 0.00 0.00 2.69
1767 1810 5.643379 TGAGTGCATCTTAATTTGGAACC 57.357 39.130 0.00 0.00 0.00 3.62
1769 1812 5.415701 TGAGTGCATCTTAATTTGGAACCTC 59.584 40.000 0.00 0.00 0.00 3.85
1771 1814 5.954150 AGTGCATCTTAATTTGGAACCTCAT 59.046 36.000 0.00 0.00 0.00 2.90
1773 1816 7.615365 AGTGCATCTTAATTTGGAACCTCATTA 59.385 33.333 0.00 0.00 0.00 1.90
1774 1817 7.702348 GTGCATCTTAATTTGGAACCTCATTAC 59.298 37.037 0.00 0.00 0.00 1.89
1924 1976 5.449177 GCAAACCAGCAATGTCCTAATCTAC 60.449 44.000 0.00 0.00 0.00 2.59
1925 1977 5.700402 AACCAGCAATGTCCTAATCTACT 57.300 39.130 0.00 0.00 0.00 2.57
1926 1978 5.283457 ACCAGCAATGTCCTAATCTACTC 57.717 43.478 0.00 0.00 0.00 2.59
1927 1979 4.101741 ACCAGCAATGTCCTAATCTACTCC 59.898 45.833 0.00 0.00 0.00 3.85
1928 1980 4.101585 CCAGCAATGTCCTAATCTACTCCA 59.898 45.833 0.00 0.00 0.00 3.86
1947 1999 5.826737 ACTCCATTAAAGATGGATTCTGCAG 59.173 40.000 7.63 7.63 46.12 4.41
2034 2108 1.270550 ACGTACCGTACCAACAAGGAG 59.729 52.381 3.04 0.00 38.73 3.69
2078 2152 1.746220 ACTCTACGCAGTCTCATGTCC 59.254 52.381 0.00 0.00 43.93 4.02
2099 2173 0.924090 CGTGCGGCTCAAGAATCTAC 59.076 55.000 0.00 0.00 0.00 2.59
2128 2202 3.897239 TCAAAAGGCTCTGAAGGAAACA 58.103 40.909 0.00 0.00 0.00 2.83
2133 2207 4.170468 AGGCTCTGAAGGAAACAAAAGA 57.830 40.909 0.00 0.00 0.00 2.52
2160 2234 2.438254 TGTGCGTCCATGATGGCC 60.438 61.111 6.59 0.00 37.47 5.36
2200 2274 4.068282 CACGCTGCTGCTGTCACG 62.068 66.667 14.03 6.03 36.97 4.35
2220 2294 4.947147 TTCACTGGCCGCCACACC 62.947 66.667 8.43 0.00 0.00 4.16
2403 2498 2.743928 GCAACGAGCCCTCTGGTG 60.744 66.667 0.00 0.00 37.23 4.17
2414 2511 2.119886 CTCTGGTGAGGATCGACCC 58.880 63.158 0.00 0.00 38.61 4.46
2434 2532 4.353437 GTCGGACCCTTGCGTCGT 62.353 66.667 0.00 0.00 37.88 4.34
2501 2599 3.799366 TGTTTTTAGTGCCTTCTCGTGA 58.201 40.909 0.00 0.00 0.00 4.35
2510 2608 1.205893 GCCTTCTCGTGAATCAGAGGT 59.794 52.381 0.00 0.00 35.34 3.85
2523 2621 1.471287 TCAGAGGTAACCACGTCGATG 59.529 52.381 2.26 2.26 42.96 3.84
2551 2649 3.764810 TTGTTGCTGGTTTGGCGCG 62.765 57.895 0.00 0.00 0.00 6.86
2552 2650 3.959975 GTTGCTGGTTTGGCGCGA 61.960 61.111 12.10 0.00 0.00 5.87
2553 2651 3.212682 TTGCTGGTTTGGCGCGAA 61.213 55.556 12.10 0.00 0.00 4.70
2554 2652 2.775856 TTGCTGGTTTGGCGCGAAA 61.776 52.632 13.91 13.91 0.00 3.46
2555 2653 2.026879 GCTGGTTTGGCGCGAAAA 59.973 55.556 19.42 10.87 0.00 2.29
2556 2654 2.016165 GCTGGTTTGGCGCGAAAAG 61.016 57.895 19.42 14.68 0.00 2.27
2557 2655 1.358759 CTGGTTTGGCGCGAAAAGT 59.641 52.632 19.42 0.00 0.00 2.66
2597 2717 2.687370 CTTTTGGCCAAATCTTTCGGG 58.313 47.619 30.78 10.25 0.00 5.14
2778 3045 8.090214 AGGAATTGTTCATTCAAATCACGAATT 58.910 29.630 0.00 0.00 43.04 2.17
2823 3090 3.163630 AGCACACTGAAACGCAAAAAT 57.836 38.095 0.00 0.00 0.00 1.82
2833 3100 5.661458 TGAAACGCAAAAATAAAGGACCAA 58.339 33.333 0.00 0.00 0.00 3.67
2837 3104 6.096673 ACGCAAAAATAAAGGACCAAGAAT 57.903 33.333 0.00 0.00 0.00 2.40
2929 3196 1.130054 AGAGAAGACCCCTGCAGCAA 61.130 55.000 8.66 0.00 0.00 3.91
2984 3251 2.036217 TCTTCGACCACGGTACAATTGT 59.964 45.455 16.68 16.68 40.21 2.71
3136 3403 1.975407 ACGAGTCATCCGACCGGTT 60.975 57.895 9.42 0.00 43.73 4.44
3388 3658 1.087501 CTAGACGAAGGCAAAAGCCC 58.912 55.000 2.33 0.00 0.00 5.19
3397 3667 1.977009 GCAAAAGCCCCGCCTAACT 60.977 57.895 0.00 0.00 0.00 2.24
3485 3756 0.978907 AACCCTAACCCTACCACACG 59.021 55.000 0.00 0.00 0.00 4.49
3650 3922 0.600782 GGACGTGCGGTTAGGAAACA 60.601 55.000 0.00 0.00 37.34 2.83
3651 3923 1.219646 GACGTGCGGTTAGGAAACAA 58.780 50.000 0.00 0.00 37.34 2.83
3652 3924 1.598601 GACGTGCGGTTAGGAAACAAA 59.401 47.619 0.00 0.00 37.34 2.83
3653 3925 2.223745 ACGTGCGGTTAGGAAACAAAT 58.776 42.857 0.00 0.00 37.34 2.32
3654 3926 3.401182 ACGTGCGGTTAGGAAACAAATA 58.599 40.909 0.00 0.00 37.34 1.40
3655 3927 3.434299 ACGTGCGGTTAGGAAACAAATAG 59.566 43.478 0.00 0.00 37.34 1.73
3656 3928 3.726782 CGTGCGGTTAGGAAACAAATAGC 60.727 47.826 0.00 0.00 37.34 2.97
3657 3929 3.189702 GTGCGGTTAGGAAACAAATAGCA 59.810 43.478 0.00 0.00 37.34 3.49
3658 3930 3.821600 TGCGGTTAGGAAACAAATAGCAA 59.178 39.130 0.00 0.00 37.34 3.91
3659 3931 4.278669 TGCGGTTAGGAAACAAATAGCAAA 59.721 37.500 0.00 0.00 37.34 3.68
3660 3932 5.047660 TGCGGTTAGGAAACAAATAGCAAAT 60.048 36.000 0.00 0.00 37.34 2.32
3661 3933 5.867174 GCGGTTAGGAAACAAATAGCAAATT 59.133 36.000 0.00 0.00 37.34 1.82
3662 3934 7.030768 GCGGTTAGGAAACAAATAGCAAATTA 58.969 34.615 0.00 0.00 37.34 1.40
3663 3935 7.704899 GCGGTTAGGAAACAAATAGCAAATTAT 59.295 33.333 0.00 0.00 37.34 1.28
3664 3936 9.581099 CGGTTAGGAAACAAATAGCAAATTATT 57.419 29.630 0.00 0.00 37.34 1.40
3673 3945 9.893305 AACAAATAGCAAATTATTATCCTACGC 57.107 29.630 0.00 0.00 0.00 4.42
3674 3946 9.062524 ACAAATAGCAAATTATTATCCTACGCA 57.937 29.630 0.00 0.00 0.00 5.24
3675 3947 9.546909 CAAATAGCAAATTATTATCCTACGCAG 57.453 33.333 0.00 0.00 0.00 5.18
3676 3948 9.502091 AAATAGCAAATTATTATCCTACGCAGA 57.498 29.630 0.00 0.00 0.00 4.26
3677 3949 8.709386 ATAGCAAATTATTATCCTACGCAGAG 57.291 34.615 0.00 0.00 0.00 3.35
3678 3950 5.934625 AGCAAATTATTATCCTACGCAGAGG 59.065 40.000 0.00 0.00 38.03 3.69
3804 4124 2.289547 GTCTCTGCTCAGTCTCGGATAC 59.710 54.545 0.00 0.00 0.00 2.24
3923 4246 3.611766 ATCAAAGGTAACAGCGCTAGT 57.388 42.857 10.99 8.29 41.41 2.57
3924 4247 2.683968 TCAAAGGTAACAGCGCTAGTG 58.316 47.619 10.99 0.20 41.41 2.74
3925 4248 2.036733 TCAAAGGTAACAGCGCTAGTGT 59.963 45.455 10.99 1.04 41.41 3.55
3926 4249 2.806244 CAAAGGTAACAGCGCTAGTGTT 59.194 45.455 10.99 14.48 41.11 3.32
3927 4250 2.833631 AGGTAACAGCGCTAGTGTTT 57.166 45.000 17.23 5.86 38.98 2.83
3928 4251 3.121738 AGGTAACAGCGCTAGTGTTTT 57.878 42.857 17.23 4.26 38.98 2.43
3929 4252 4.261578 AGGTAACAGCGCTAGTGTTTTA 57.738 40.909 17.23 0.00 38.98 1.52
3930 4253 3.992427 AGGTAACAGCGCTAGTGTTTTAC 59.008 43.478 17.23 10.94 38.98 2.01
3931 4254 3.992427 GGTAACAGCGCTAGTGTTTTACT 59.008 43.478 17.23 2.08 43.56 2.24
3932 4255 5.047802 AGGTAACAGCGCTAGTGTTTTACTA 60.048 40.000 17.23 0.00 38.98 1.82
3933 4256 5.061435 GGTAACAGCGCTAGTGTTTTACTAC 59.939 44.000 17.23 9.72 40.89 2.73
3934 4257 4.516365 ACAGCGCTAGTGTTTTACTACT 57.484 40.909 10.99 0.00 40.89 2.57
3935 4258 4.235360 ACAGCGCTAGTGTTTTACTACTG 58.765 43.478 10.99 3.73 40.89 2.74
3936 4259 4.022589 ACAGCGCTAGTGTTTTACTACTGA 60.023 41.667 10.99 0.00 40.89 3.41
3937 4260 4.559251 CAGCGCTAGTGTTTTACTACTGAG 59.441 45.833 10.99 0.00 40.89 3.35
3962 4285 3.354948 AATAGGCACTGTCAAGCATGA 57.645 42.857 0.00 0.00 41.52 3.07
3964 4287 1.531423 AGGCACTGTCAAGCATGAAG 58.469 50.000 0.00 0.00 37.18 3.02
3981 4325 8.532186 AGCATGAAGTATCTCTAGAAGAAGAA 57.468 34.615 0.00 0.00 37.61 2.52
3982 4326 8.413229 AGCATGAAGTATCTCTAGAAGAAGAAC 58.587 37.037 0.00 0.00 37.61 3.01
3983 4327 8.194104 GCATGAAGTATCTCTAGAAGAAGAACA 58.806 37.037 0.00 0.00 37.61 3.18
3984 4328 9.515020 CATGAAGTATCTCTAGAAGAAGAACAC 57.485 37.037 0.00 0.00 37.61 3.32
3985 4329 8.637196 TGAAGTATCTCTAGAAGAAGAACACA 57.363 34.615 0.00 0.00 37.61 3.72
3986 4330 9.249053 TGAAGTATCTCTAGAAGAAGAACACAT 57.751 33.333 0.00 0.00 37.61 3.21
3987 4331 9.730420 GAAGTATCTCTAGAAGAAGAACACATC 57.270 37.037 0.00 0.00 37.61 3.06
3988 4332 9.474313 AAGTATCTCTAGAAGAAGAACACATCT 57.526 33.333 0.00 0.00 41.32 2.90
3989 4333 8.902806 AGTATCTCTAGAAGAAGAACACATCTG 58.097 37.037 0.00 0.00 38.79 2.90
3990 4334 6.522625 TCTCTAGAAGAAGAACACATCTGG 57.477 41.667 0.00 0.00 38.79 3.86
3991 4335 5.078411 TCTAGAAGAAGAACACATCTGGC 57.922 43.478 0.00 0.00 38.79 4.85
4004 4348 1.402968 CATCTGGCCGTTTCCTTGATG 59.597 52.381 0.00 0.00 34.39 3.07
4005 4349 0.690192 TCTGGCCGTTTCCTTGATGA 59.310 50.000 0.00 0.00 0.00 2.92
4007 4351 0.960364 TGGCCGTTTCCTTGATGAGC 60.960 55.000 0.00 0.00 0.00 4.26
4009 4353 1.168714 GCCGTTTCCTTGATGAGCTT 58.831 50.000 0.00 0.00 0.00 3.74
4010 4354 1.135575 GCCGTTTCCTTGATGAGCTTG 60.136 52.381 0.00 0.00 0.00 4.01
4012 4356 2.154462 CGTTTCCTTGATGAGCTTGGT 58.846 47.619 0.00 0.00 0.00 3.67
4014 4358 3.610114 CGTTTCCTTGATGAGCTTGGTTG 60.610 47.826 0.00 0.00 0.00 3.77
4015 4359 1.538047 TCCTTGATGAGCTTGGTTGC 58.462 50.000 0.00 0.00 0.00 4.17
4016 4360 1.202915 TCCTTGATGAGCTTGGTTGCA 60.203 47.619 0.00 0.00 34.99 4.08
4017 4361 1.822990 CCTTGATGAGCTTGGTTGCAT 59.177 47.619 0.00 0.00 34.99 3.96
4019 4363 3.508762 CTTGATGAGCTTGGTTGCATTC 58.491 45.455 0.00 0.00 34.99 2.67
4020 4364 2.799017 TGATGAGCTTGGTTGCATTCT 58.201 42.857 0.00 0.00 34.99 2.40
4021 4365 3.954200 TGATGAGCTTGGTTGCATTCTA 58.046 40.909 0.00 0.00 34.99 2.10
4022 4366 4.334552 TGATGAGCTTGGTTGCATTCTAA 58.665 39.130 0.00 0.00 34.99 2.10
4023 4367 4.766373 TGATGAGCTTGGTTGCATTCTAAA 59.234 37.500 0.00 0.00 34.99 1.85
4024 4368 5.419788 TGATGAGCTTGGTTGCATTCTAAAT 59.580 36.000 0.00 0.00 34.99 1.40
4030 4380 7.486647 AGCTTGGTTGCATTCTAAATCTAATG 58.513 34.615 0.00 0.00 36.40 1.90
4066 4416 2.278013 GCCTACTTCGACTCCGCG 60.278 66.667 0.00 0.00 35.37 6.46
4093 4443 2.633860 CCTTGGCAAGGTCAGACAC 58.366 57.895 33.43 0.00 43.95 3.67
4165 4533 1.331756 CTGACCATGCGTGCTTAATCC 59.668 52.381 0.00 0.00 0.00 3.01
4172 4540 1.230324 GCGTGCTTAATCCATCTCCC 58.770 55.000 0.00 0.00 0.00 4.30
4256 4624 3.838244 AGCTCAAGGTCAGTACAACAA 57.162 42.857 0.00 0.00 0.00 2.83
4260 4628 2.431419 TCAAGGTCAGTACAACAACGGA 59.569 45.455 0.00 0.00 0.00 4.69
4273 4641 1.966451 AACGGAAAGCTTCAGCCCG 60.966 57.895 20.57 20.57 44.90 6.13
4313 4681 8.254508 GTCAGTCAGGTCTATCTAGAAACAATT 58.745 37.037 0.00 0.00 33.47 2.32
4323 4691 9.755804 TCTATCTAGAAACAATTACTGATGCTG 57.244 33.333 0.00 0.00 0.00 4.41
4329 4697 8.356533 AGAAACAATTACTGATGCTGTTTTTG 57.643 30.769 0.00 0.00 39.61 2.44
4491 4864 1.029408 TGCTTCTTGTGGTGCGTTGT 61.029 50.000 0.00 0.00 0.00 3.32
4498 4872 2.025418 GTGGTGCGTTGTAGGGTCG 61.025 63.158 0.00 0.00 0.00 4.79
4525 4909 2.099431 CAGCAGGTGAAGAGCTCGC 61.099 63.158 8.37 5.34 36.26 5.03
4551 4935 0.951558 GAGAGGAGTGAGCTCGGATC 59.048 60.000 9.64 6.66 42.53 3.36
4598 4982 9.458374 AAATTCGTAATGTAGGAAACAACTTTG 57.542 29.630 0.00 0.00 42.70 2.77
4599 4983 5.992729 TCGTAATGTAGGAAACAACTTTGC 58.007 37.500 0.00 0.00 42.70 3.68
4600 4984 5.527951 TCGTAATGTAGGAAACAACTTTGCA 59.472 36.000 0.00 0.00 42.70 4.08
4662 5046 3.054878 GTCACAAGTGATTAACCGTCGT 58.945 45.455 6.15 0.00 42.18 4.34
4681 5065 5.977725 CGTCGTTATCATGGTTATTGAGTCT 59.022 40.000 0.00 0.00 0.00 3.24
4771 5155 9.981114 CAAATAAAAACCTAAGAACTGGTCAAT 57.019 29.630 0.00 0.00 35.17 2.57
4780 5164 8.218488 ACCTAAGAACTGGTCAATTTTTACTCT 58.782 33.333 0.00 0.00 29.18 3.24
4844 5228 9.814507 GTAGTAGTTATCGTCTATCATTGACTG 57.185 37.037 0.00 0.00 32.70 3.51
4858 5242 3.452755 TTGACTGGCTATATGTCGTGG 57.547 47.619 0.00 0.00 33.81 4.94
4861 5245 3.181479 TGACTGGCTATATGTCGTGGTTC 60.181 47.826 0.00 0.00 33.81 3.62
4871 5255 8.395633 GCTATATGTCGTGGTTCAGTTATTTTT 58.604 33.333 0.00 0.00 0.00 1.94
4911 5295 6.644592 TGACTTAATTGTTTTGCCTAATGTGC 59.355 34.615 0.00 0.00 0.00 4.57
4932 5316 5.522460 GTGCCGCTAACTTGTAAGATATTCA 59.478 40.000 0.00 0.00 0.00 2.57
4960 5344 6.362248 ACACTCCAAACCAAGTAAACATACT 58.638 36.000 0.00 0.00 0.00 2.12
4980 5364 4.967437 ACTATCCGTATTCGTATTCGAGC 58.033 43.478 2.74 0.00 46.81 5.03
4982 5366 3.263602 TCCGTATTCGTATTCGAGCAG 57.736 47.619 2.74 0.00 46.81 4.24
4992 5376 1.858091 ATTCGAGCAGTATCCGCTTG 58.142 50.000 0.00 0.00 40.63 4.01
5015 5400 5.182570 TGGAGTTCGTATCCTATAACATCCG 59.817 44.000 5.23 0.00 37.74 4.18
5039 5424 1.952990 TCGCATTTGGAGTTGCTTTGA 59.047 42.857 0.00 0.00 36.71 2.69
5045 5430 6.091169 CGCATTTGGAGTTGCTTTGAAAATAT 59.909 34.615 0.00 0.00 36.71 1.28
5072 5459 5.649782 ACAAAAGTGAGAAGGGCATTATG 57.350 39.130 0.00 0.00 0.00 1.90
5134 5524 5.525378 AGAAAAATCTACCTCATGATGCGAC 59.475 40.000 0.00 0.00 0.00 5.19
5135 5525 3.393089 AATCTACCTCATGATGCGACC 57.607 47.619 0.00 0.00 0.00 4.79
5139 5529 0.176680 ACCTCATGATGCGACCAGTC 59.823 55.000 0.00 0.00 0.00 3.51
5142 5532 0.460811 TCATGATGCGACCAGTCTGC 60.461 55.000 0.00 7.40 0.00 4.26
5252 5642 9.951866 AAAGGGTATATTTTTCATGGTTATCCT 57.048 29.630 0.00 0.00 34.23 3.24
5282 5672 0.684153 GCCTCTTAATTGCAGGGCCA 60.684 55.000 6.18 0.00 34.19 5.36
5346 5737 5.459536 AAAGAAAAGAACTCCTCATTGCC 57.540 39.130 0.00 0.00 0.00 4.52
5350 5741 0.329596 AGAACTCCTCATTGCCCACC 59.670 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.685803 CCCACCAGCTGCAATTGGATA 60.686 52.381 19.91 0.00 37.89 2.59
82 83 3.749665 TTTTCAAAATCCCACCAGCTG 57.250 42.857 6.78 6.78 0.00 4.24
88 89 2.412870 CCCGCTTTTTCAAAATCCCAC 58.587 47.619 0.00 0.00 0.00 4.61
96 97 2.203365 TCGCCCCCGCTTTTTCAA 60.203 55.556 0.00 0.00 0.00 2.69
99 100 2.519780 TTGTCGCCCCCGCTTTTT 60.520 55.556 0.00 0.00 0.00 1.94
170 173 4.087182 TCGAGTCTGACCTAGGTTTTCAT 58.913 43.478 17.53 2.52 0.00 2.57
295 300 1.763968 GGATCTAACCACAAAGGCCC 58.236 55.000 0.00 0.00 43.14 5.80
350 357 4.137543 AGGATCTTCAACAACAACACCTC 58.862 43.478 0.00 0.00 0.00 3.85
359 366 9.511272 CATAATGATATGGAGGATCTTCAACAA 57.489 33.333 7.20 0.00 36.13 2.83
374 381 9.820725 AAAAACCATTGACACCATAATGATATG 57.179 29.630 0.00 0.00 38.93 1.78
375 382 9.820725 CAAAAACCATTGACACCATAATGATAT 57.179 29.630 0.00 0.00 36.61 1.63
383 392 3.465871 GCACAAAAACCATTGACACCAT 58.534 40.909 0.00 0.00 34.38 3.55
402 415 7.050970 ACTACAAATGAGACTTATATCCGCA 57.949 36.000 0.00 0.00 0.00 5.69
404 417 9.314321 ACAAACTACAAATGAGACTTATATCCG 57.686 33.333 0.00 0.00 0.00 4.18
409 422 9.088512 GATCGACAAACTACAAATGAGACTTAT 57.911 33.333 0.00 0.00 0.00 1.73
410 423 8.085909 TGATCGACAAACTACAAATGAGACTTA 58.914 33.333 0.00 0.00 0.00 2.24
411 424 6.929049 TGATCGACAAACTACAAATGAGACTT 59.071 34.615 0.00 0.00 0.00 3.01
412 425 6.366332 GTGATCGACAAACTACAAATGAGACT 59.634 38.462 0.00 0.00 0.00 3.24
418 431 7.672983 AATCAGTGATCGACAAACTACAAAT 57.327 32.000 5.98 0.00 0.00 2.32
419 432 7.225734 TCAAATCAGTGATCGACAAACTACAAA 59.774 33.333 5.98 0.00 0.00 2.83
490 503 6.348540 CCAACAACTAGCAAAGTCATAAGACC 60.349 42.308 0.00 0.00 46.15 3.85
492 505 6.204688 CACCAACAACTAGCAAAGTCATAAGA 59.795 38.462 0.00 0.00 37.50 2.10
493 506 6.017109 ACACCAACAACTAGCAAAGTCATAAG 60.017 38.462 0.00 0.00 37.50 1.73
494 507 5.825679 ACACCAACAACTAGCAAAGTCATAA 59.174 36.000 0.00 0.00 37.50 1.90
495 508 5.238432 CACACCAACAACTAGCAAAGTCATA 59.762 40.000 0.00 0.00 37.50 2.15
496 509 4.036734 CACACCAACAACTAGCAAAGTCAT 59.963 41.667 0.00 0.00 37.50 3.06
497 510 3.376859 CACACCAACAACTAGCAAAGTCA 59.623 43.478 0.00 0.00 37.50 3.41
498 511 3.792124 GCACACCAACAACTAGCAAAGTC 60.792 47.826 0.00 0.00 37.50 3.01
499 512 2.099098 GCACACCAACAACTAGCAAAGT 59.901 45.455 0.00 0.00 41.49 2.66
500 513 2.731217 GCACACCAACAACTAGCAAAG 58.269 47.619 0.00 0.00 0.00 2.77
501 514 1.064803 CGCACACCAACAACTAGCAAA 59.935 47.619 0.00 0.00 0.00 3.68
502 515 0.660488 CGCACACCAACAACTAGCAA 59.340 50.000 0.00 0.00 0.00 3.91
503 516 0.462937 ACGCACACCAACAACTAGCA 60.463 50.000 0.00 0.00 0.00 3.49
504 517 0.041312 CACGCACACCAACAACTAGC 60.041 55.000 0.00 0.00 0.00 3.42
505 518 1.003972 CACACGCACACCAACAACTAG 60.004 52.381 0.00 0.00 0.00 2.57
506 519 1.010580 CACACGCACACCAACAACTA 58.989 50.000 0.00 0.00 0.00 2.24
507 520 0.958382 ACACACGCACACCAACAACT 60.958 50.000 0.00 0.00 0.00 3.16
508 521 0.796491 CACACACGCACACCAACAAC 60.796 55.000 0.00 0.00 0.00 3.32
509 522 1.237954 ACACACACGCACACCAACAA 61.238 50.000 0.00 0.00 0.00 2.83
510 523 1.672682 ACACACACGCACACCAACA 60.673 52.632 0.00 0.00 0.00 3.33
511 524 1.226267 CACACACACGCACACCAAC 60.226 57.895 0.00 0.00 0.00 3.77
512 525 1.237954 AACACACACACGCACACCAA 61.238 50.000 0.00 0.00 0.00 3.67
513 526 1.672682 AACACACACACGCACACCA 60.673 52.632 0.00 0.00 0.00 4.17
514 527 1.226267 CAACACACACACGCACACC 60.226 57.895 0.00 0.00 0.00 4.16
515 528 1.226267 CCAACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
516 529 0.746204 ATCCAACACACACACGCACA 60.746 50.000 0.00 0.00 0.00 4.57
517 530 0.380378 AATCCAACACACACACGCAC 59.620 50.000 0.00 0.00 0.00 5.34
518 531 0.380024 CAATCCAACACACACACGCA 59.620 50.000 0.00 0.00 0.00 5.24
519 532 0.317770 CCAATCCAACACACACACGC 60.318 55.000 0.00 0.00 0.00 5.34
520 533 0.317770 GCCAATCCAACACACACACG 60.318 55.000 0.00 0.00 0.00 4.49
521 534 1.032014 AGCCAATCCAACACACACAC 58.968 50.000 0.00 0.00 0.00 3.82
522 535 1.031235 CAGCCAATCCAACACACACA 58.969 50.000 0.00 0.00 0.00 3.72
523 536 0.318955 GCAGCCAATCCAACACACAC 60.319 55.000 0.00 0.00 0.00 3.82
524 537 1.794151 CGCAGCCAATCCAACACACA 61.794 55.000 0.00 0.00 0.00 3.72
525 538 1.081242 CGCAGCCAATCCAACACAC 60.081 57.895 0.00 0.00 0.00 3.82
526 539 1.528076 ACGCAGCCAATCCAACACA 60.528 52.632 0.00 0.00 0.00 3.72
527 540 1.081242 CACGCAGCCAATCCAACAC 60.081 57.895 0.00 0.00 0.00 3.32
528 541 2.918345 GCACGCAGCCAATCCAACA 61.918 57.895 0.00 0.00 37.23 3.33
529 542 2.126346 GCACGCAGCCAATCCAAC 60.126 61.111 0.00 0.00 37.23 3.77
530 543 1.936436 GATGCACGCAGCCAATCCAA 61.936 55.000 0.00 0.00 44.83 3.53
531 544 2.361483 ATGCACGCAGCCAATCCA 60.361 55.556 0.00 0.00 44.83 3.41
532 545 2.410469 GATGCACGCAGCCAATCC 59.590 61.111 0.00 0.00 44.83 3.01
538 551 3.193157 CATAATTAGGATGCACGCAGC 57.807 47.619 0.00 0.00 45.96 5.25
546 559 3.057315 CCGGCCTTTGCATAATTAGGATG 60.057 47.826 0.00 0.00 40.13 3.51
547 560 3.157087 CCGGCCTTTGCATAATTAGGAT 58.843 45.455 0.00 0.00 40.13 3.24
548 561 2.582052 CCGGCCTTTGCATAATTAGGA 58.418 47.619 0.00 0.00 40.13 2.94
549 562 1.613437 CCCGGCCTTTGCATAATTAGG 59.387 52.381 0.00 0.00 40.13 2.69
550 563 2.034558 CACCCGGCCTTTGCATAATTAG 59.965 50.000 0.00 0.00 40.13 1.73
551 564 2.028130 CACCCGGCCTTTGCATAATTA 58.972 47.619 0.00 0.00 40.13 1.40
552 565 0.823460 CACCCGGCCTTTGCATAATT 59.177 50.000 0.00 0.00 40.13 1.40
553 566 0.324275 ACACCCGGCCTTTGCATAAT 60.324 50.000 0.00 0.00 40.13 1.28
554 567 0.328592 TACACCCGGCCTTTGCATAA 59.671 50.000 0.00 0.00 40.13 1.90
555 568 0.548989 ATACACCCGGCCTTTGCATA 59.451 50.000 0.00 0.00 40.13 3.14
556 569 1.037030 CATACACCCGGCCTTTGCAT 61.037 55.000 0.00 0.00 40.13 3.96
557 570 1.677300 CATACACCCGGCCTTTGCA 60.677 57.895 0.00 0.00 40.13 4.08
558 571 3.063743 GCATACACCCGGCCTTTGC 62.064 63.158 0.00 0.00 0.00 3.68
559 572 1.376609 GAGCATACACCCGGCCTTTG 61.377 60.000 0.00 0.00 0.00 2.77
560 573 1.077716 GAGCATACACCCGGCCTTT 60.078 57.895 0.00 0.00 0.00 3.11
561 574 1.635817 ATGAGCATACACCCGGCCTT 61.636 55.000 0.00 0.00 0.00 4.35
562 575 1.635817 AATGAGCATACACCCGGCCT 61.636 55.000 0.00 0.00 0.00 5.19
563 576 1.152963 AATGAGCATACACCCGGCC 60.153 57.895 0.00 0.00 0.00 6.13
564 577 0.748005 ACAATGAGCATACACCCGGC 60.748 55.000 0.00 0.00 0.00 6.13
565 578 2.613026 TACAATGAGCATACACCCGG 57.387 50.000 0.00 0.00 0.00 5.73
566 579 5.700832 ACATAATACAATGAGCATACACCCG 59.299 40.000 0.00 0.00 0.00 5.28
567 580 8.792830 ATACATAATACAATGAGCATACACCC 57.207 34.615 0.00 0.00 0.00 4.61
580 593 9.494271 GGAGCATCAAGAGAATACATAATACAA 57.506 33.333 0.00 0.00 36.25 2.41
581 594 8.650490 TGGAGCATCAAGAGAATACATAATACA 58.350 33.333 0.00 0.00 36.25 2.29
582 595 9.664332 ATGGAGCATCAAGAGAATACATAATAC 57.336 33.333 0.00 0.00 36.25 1.89
584 597 9.584008 AAATGGAGCATCAAGAGAATACATAAT 57.416 29.630 0.00 0.00 36.25 1.28
585 598 8.985315 AAATGGAGCATCAAGAGAATACATAA 57.015 30.769 0.00 0.00 36.25 1.90
586 599 8.843262 CAAAATGGAGCATCAAGAGAATACATA 58.157 33.333 0.00 0.00 36.25 2.29
587 600 7.558807 TCAAAATGGAGCATCAAGAGAATACAT 59.441 33.333 0.00 0.00 36.25 2.29
588 601 6.885918 TCAAAATGGAGCATCAAGAGAATACA 59.114 34.615 0.00 0.00 36.25 2.29
589 602 7.325660 TCAAAATGGAGCATCAAGAGAATAC 57.674 36.000 0.00 0.00 36.25 1.89
590 603 7.563888 CTCAAAATGGAGCATCAAGAGAATA 57.436 36.000 0.00 0.00 36.25 1.75
591 604 6.452494 CTCAAAATGGAGCATCAAGAGAAT 57.548 37.500 0.00 0.00 36.25 2.40
592 605 5.892160 CTCAAAATGGAGCATCAAGAGAA 57.108 39.130 0.00 0.00 36.25 2.87
603 616 7.064966 GGTGAATTTTATTGGCTCAAAATGGAG 59.935 37.037 5.46 0.00 35.19 3.86
604 617 6.878389 GGTGAATTTTATTGGCTCAAAATGGA 59.122 34.615 5.46 0.00 35.19 3.41
605 618 6.093909 GGGTGAATTTTATTGGCTCAAAATGG 59.906 38.462 5.46 0.00 35.19 3.16
606 619 6.880529 AGGGTGAATTTTATTGGCTCAAAATG 59.119 34.615 5.46 0.00 35.19 2.32
607 620 7.019656 AGGGTGAATTTTATTGGCTCAAAAT 57.980 32.000 0.00 0.00 36.22 1.82
608 621 6.432403 AGGGTGAATTTTATTGGCTCAAAA 57.568 33.333 0.00 0.00 0.00 2.44
609 622 6.432403 AAGGGTGAATTTTATTGGCTCAAA 57.568 33.333 0.00 0.00 0.00 2.69
610 623 6.432403 AAAGGGTGAATTTTATTGGCTCAA 57.568 33.333 0.00 0.00 0.00 3.02
611 624 6.432403 AAAAGGGTGAATTTTATTGGCTCA 57.568 33.333 0.00 0.00 0.00 4.26
612 625 5.874810 GGAAAAGGGTGAATTTTATTGGCTC 59.125 40.000 0.00 0.00 30.22 4.70
613 626 5.568624 CGGAAAAGGGTGAATTTTATTGGCT 60.569 40.000 0.00 0.00 30.22 4.75
614 627 4.629634 CGGAAAAGGGTGAATTTTATTGGC 59.370 41.667 0.00 0.00 30.22 4.52
615 628 6.031751 TCGGAAAAGGGTGAATTTTATTGG 57.968 37.500 0.00 0.00 30.22 3.16
616 629 7.954788 TTTCGGAAAAGGGTGAATTTTATTG 57.045 32.000 0.00 0.00 30.22 1.90
617 630 8.966069 TTTTTCGGAAAAGGGTGAATTTTATT 57.034 26.923 14.84 0.00 31.41 1.40
639 652 3.119637 GGCACATACAGCGGTGTATTTTT 60.120 43.478 31.85 18.90 45.99 1.94
640 653 2.422127 GGCACATACAGCGGTGTATTTT 59.578 45.455 31.85 21.08 45.99 1.82
641 654 2.014128 GGCACATACAGCGGTGTATTT 58.986 47.619 31.85 25.03 45.99 1.40
642 655 1.065782 TGGCACATACAGCGGTGTATT 60.066 47.619 31.85 21.53 45.99 1.89
644 657 0.390603 GTGGCACATACAGCGGTGTA 60.391 55.000 27.79 27.79 44.52 2.90
645 658 1.671054 GTGGCACATACAGCGGTGT 60.671 57.895 25.12 25.12 44.52 4.16
646 659 2.739704 CGTGGCACATACAGCGGTG 61.740 63.158 19.09 14.13 44.52 4.94
647 660 2.434185 CGTGGCACATACAGCGGT 60.434 61.111 19.09 0.00 44.52 5.68
648 661 3.195002 CCGTGGCACATACAGCGG 61.195 66.667 19.09 7.28 44.52 5.52
649 662 2.566057 TACCCGTGGCACATACAGCG 62.566 60.000 19.09 1.02 44.52 5.18
652 665 1.219664 GCTACCCGTGGCACATACA 59.780 57.895 19.09 0.00 44.52 2.29
664 677 2.280628 CTCTCAAATCAACGGCTACCC 58.719 52.381 0.00 0.00 0.00 3.69
675 688 2.094494 TGCTCCGAGACACTCTCAAATC 60.094 50.000 0.00 0.00 43.55 2.17
677 690 1.270826 CTGCTCCGAGACACTCTCAAA 59.729 52.381 0.00 0.00 43.55 2.69
688 701 1.108727 AGCATCCTCTCTGCTCCGAG 61.109 60.000 0.00 0.00 46.79 4.63
758 776 1.060553 CGCAACGGACATCACATACAC 59.939 52.381 0.00 0.00 0.00 2.90
848 866 1.807814 AGGAGGGACAAGTCAAGTGT 58.192 50.000 2.29 0.00 0.00 3.55
859 877 2.371259 GGAGGAGGCAAGGAGGGAC 61.371 68.421 0.00 0.00 0.00 4.46
889 907 0.764890 TGTGTGGGTGGGAAGAAGAG 59.235 55.000 0.00 0.00 0.00 2.85
890 908 0.764890 CTGTGTGGGTGGGAAGAAGA 59.235 55.000 0.00 0.00 0.00 2.87
891 909 0.764890 TCTGTGTGGGTGGGAAGAAG 59.235 55.000 0.00 0.00 0.00 2.85
1041 1069 1.741770 CAGTGCTTGGCTACGACCC 60.742 63.158 0.00 0.00 0.00 4.46
1062 1090 2.252260 CGGCAAGCGTGTTGAAGG 59.748 61.111 0.59 0.00 0.00 3.46
1081 1109 0.526310 GCCGCTCTGCAAAATAAGGC 60.526 55.000 0.00 0.00 36.32 4.35
1082 1110 0.248215 CGCCGCTCTGCAAAATAAGG 60.248 55.000 0.00 0.00 0.00 2.69
1083 1111 0.726827 TCGCCGCTCTGCAAAATAAG 59.273 50.000 0.00 0.00 0.00 1.73
1298 1326 1.959848 GCTCAGCCAAGGAAACCAC 59.040 57.895 0.00 0.00 0.00 4.16
1323 1351 8.834004 ACTAGTACAAGTCTCCCATAATACAA 57.166 34.615 0.00 0.00 0.00 2.41
1324 1352 8.692710 CAACTAGTACAAGTCTCCCATAATACA 58.307 37.037 0.00 0.00 0.00 2.29
1325 1353 8.142551 CCAACTAGTACAAGTCTCCCATAATAC 58.857 40.741 0.00 0.00 0.00 1.89
1326 1354 7.842743 ACCAACTAGTACAAGTCTCCCATAATA 59.157 37.037 0.00 0.00 0.00 0.98
1369 1408 3.119743 TGAACGTATTACTCACTCCACCG 60.120 47.826 0.00 0.00 0.00 4.94
1436 1475 4.463050 TGGGTTAGTTGAAACTCCCAAT 57.537 40.909 16.48 0.00 45.15 3.16
1481 1521 5.991933 AATACAGACTGAGAAGAGCTTCA 57.008 39.130 10.08 0.00 41.84 3.02
1488 1528 5.578727 GCACAAGGTAATACAGACTGAGAAG 59.421 44.000 10.08 0.00 0.00 2.85
1498 1538 2.026636 GGACAGGGCACAAGGTAATACA 60.027 50.000 0.00 0.00 0.00 2.29
1507 1550 2.829384 GGACAGGGACAGGGCACAA 61.829 63.158 0.00 0.00 0.00 3.33
1576 1619 2.546795 GGTGATACGCTCATGGGAGAAG 60.547 54.545 2.25 0.00 44.26 2.85
1592 1635 3.719268 TGACATAGCCAAACAGGTGAT 57.281 42.857 0.00 0.00 40.61 3.06
1623 1666 6.142817 ACAGCGTATCATCAAACAGAAAAAC 58.857 36.000 0.00 0.00 0.00 2.43
1629 1672 4.259970 GCACTACAGCGTATCATCAAACAG 60.260 45.833 0.00 0.00 0.00 3.16
1632 1675 4.112634 GAGCACTACAGCGTATCATCAAA 58.887 43.478 0.00 0.00 40.15 2.69
1636 1679 1.341531 GGGAGCACTACAGCGTATCAT 59.658 52.381 0.00 0.00 40.15 2.45
1637 1680 0.744874 GGGAGCACTACAGCGTATCA 59.255 55.000 0.00 0.00 40.15 2.15
1638 1681 0.032267 GGGGAGCACTACAGCGTATC 59.968 60.000 0.00 0.00 40.15 2.24
1639 1682 1.400530 GGGGGAGCACTACAGCGTAT 61.401 60.000 0.00 0.00 40.15 3.06
1640 1683 2.056223 GGGGGAGCACTACAGCGTA 61.056 63.158 0.00 0.00 40.15 4.42
1641 1684 3.391382 GGGGGAGCACTACAGCGT 61.391 66.667 0.00 0.00 40.15 5.07
1642 1685 3.390521 TGGGGGAGCACTACAGCG 61.391 66.667 0.00 0.00 40.15 5.18
1643 1686 2.269241 GTGGGGGAGCACTACAGC 59.731 66.667 0.00 0.00 0.00 4.40
1654 1697 2.089600 TTTTGTTTAGTGGGTGGGGG 57.910 50.000 0.00 0.00 0.00 5.40
1656 1699 2.969262 ACCATTTTGTTTAGTGGGTGGG 59.031 45.455 0.00 0.00 36.05 4.61
1658 1701 6.811954 AGTTAACCATTTTGTTTAGTGGGTG 58.188 36.000 0.88 0.00 36.05 4.61
1660 1703 7.269316 ACAAGTTAACCATTTTGTTTAGTGGG 58.731 34.615 0.88 0.00 36.05 4.61
1696 1739 3.243643 AGCGTTTTTGACACTACACGTAC 59.756 43.478 0.00 0.00 0.00 3.67
1700 1743 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
1701 1744 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
1705 1748 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
1706 1749 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
1707 1750 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
1708 1751 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
1709 1752 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
1710 1753 7.176690 CCCATCCCATAATATAAGAGCGTTTTT 59.823 37.037 0.00 0.00 0.00 1.94
1712 1755 6.180472 CCCATCCCATAATATAAGAGCGTTT 58.820 40.000 0.00 0.00 0.00 3.60
1713 1756 5.339200 CCCCATCCCATAATATAAGAGCGTT 60.339 44.000 0.00 0.00 0.00 4.84
1714 1757 4.164221 CCCCATCCCATAATATAAGAGCGT 59.836 45.833 0.00 0.00 0.00 5.07
1715 1758 4.444876 CCCCCATCCCATAATATAAGAGCG 60.445 50.000 0.00 0.00 0.00 5.03
1716 1759 4.726825 TCCCCCATCCCATAATATAAGAGC 59.273 45.833 0.00 0.00 0.00 4.09
1717 1760 5.973124 ACTCCCCCATCCCATAATATAAGAG 59.027 44.000 0.00 0.00 0.00 2.85
1718 1761 5.939437 ACTCCCCCATCCCATAATATAAGA 58.061 41.667 0.00 0.00 0.00 2.10
1719 1762 7.954539 ATACTCCCCCATCCCATAATATAAG 57.045 40.000 0.00 0.00 0.00 1.73
1720 1763 8.565239 CAAATACTCCCCCATCCCATAATATAA 58.435 37.037 0.00 0.00 0.00 0.98
1721 1764 7.914959 TCAAATACTCCCCCATCCCATAATATA 59.085 37.037 0.00 0.00 0.00 0.86
1722 1765 6.744821 TCAAATACTCCCCCATCCCATAATAT 59.255 38.462 0.00 0.00 0.00 1.28
1723 1766 6.101919 TCAAATACTCCCCCATCCCATAATA 58.898 40.000 0.00 0.00 0.00 0.98
1724 1767 4.925734 TCAAATACTCCCCCATCCCATAAT 59.074 41.667 0.00 0.00 0.00 1.28
1725 1768 4.320398 TCAAATACTCCCCCATCCCATAA 58.680 43.478 0.00 0.00 0.00 1.90
1726 1769 3.916349 CTCAAATACTCCCCCATCCCATA 59.084 47.826 0.00 0.00 0.00 2.74
1727 1770 2.718609 CTCAAATACTCCCCCATCCCAT 59.281 50.000 0.00 0.00 0.00 4.00
1728 1771 2.135189 CTCAAATACTCCCCCATCCCA 58.865 52.381 0.00 0.00 0.00 4.37
1729 1772 2.136026 ACTCAAATACTCCCCCATCCC 58.864 52.381 0.00 0.00 0.00 3.85
1730 1773 2.749800 GCACTCAAATACTCCCCCATCC 60.750 54.545 0.00 0.00 0.00 3.51
1731 1774 2.092429 TGCACTCAAATACTCCCCCATC 60.092 50.000 0.00 0.00 0.00 3.51
1732 1775 1.922447 TGCACTCAAATACTCCCCCAT 59.078 47.619 0.00 0.00 0.00 4.00
1733 1776 1.367346 TGCACTCAAATACTCCCCCA 58.633 50.000 0.00 0.00 0.00 4.96
1734 1777 2.173569 AGATGCACTCAAATACTCCCCC 59.826 50.000 0.00 0.00 0.00 5.40
1735 1778 3.567478 AGATGCACTCAAATACTCCCC 57.433 47.619 0.00 0.00 0.00 4.81
1736 1779 7.573968 AATTAAGATGCACTCAAATACTCCC 57.426 36.000 0.00 0.00 0.00 4.30
1737 1780 7.917505 CCAAATTAAGATGCACTCAAATACTCC 59.082 37.037 0.00 0.00 0.00 3.85
1738 1781 8.677300 TCCAAATTAAGATGCACTCAAATACTC 58.323 33.333 0.00 0.00 0.00 2.59
1747 1790 5.324409 TGAGGTTCCAAATTAAGATGCACT 58.676 37.500 0.00 0.00 0.00 4.40
1767 1810 7.591006 TTAAAACCGCTTCTAGTGTAATGAG 57.409 36.000 0.00 0.00 0.00 2.90
1769 1812 7.407337 GGATTAAAACCGCTTCTAGTGTAATG 58.593 38.462 0.00 0.00 0.00 1.90
1771 1814 5.577945 CGGATTAAAACCGCTTCTAGTGTAA 59.422 40.000 10.59 0.00 43.74 2.41
1773 1816 3.930848 CGGATTAAAACCGCTTCTAGTGT 59.069 43.478 10.59 0.00 43.74 3.55
1774 1817 4.516092 CGGATTAAAACCGCTTCTAGTG 57.484 45.455 10.59 0.00 43.74 2.74
1802 1845 0.393808 TCTCAATGGTTAAGGCCGCC 60.394 55.000 0.00 0.00 0.00 6.13
1807 1850 4.156739 GGAACTTGCTCTCAATGGTTAAGG 59.843 45.833 0.00 0.00 0.00 2.69
1808 1851 5.006386 AGGAACTTGCTCTCAATGGTTAAG 58.994 41.667 0.00 0.00 27.25 1.85
1926 1978 4.340097 TGCTGCAGAATCCATCTTTAATGG 59.660 41.667 20.43 0.00 35.73 3.16
1927 1979 5.509716 TGCTGCAGAATCCATCTTTAATG 57.490 39.130 20.43 0.00 35.73 1.90
1928 1980 5.048921 CGATGCTGCAGAATCCATCTTTAAT 60.049 40.000 26.13 0.00 35.73 1.40
1947 1999 2.399611 GCTGCACGTAACCGATGC 59.600 61.111 0.00 0.00 39.72 3.91
2034 2108 1.685148 CCTTCCTGCCCTTCATTAGC 58.315 55.000 0.00 0.00 0.00 3.09
2078 2152 3.425938 GATTCTTGAGCCGCACGCG 62.426 63.158 3.53 3.53 44.76 6.01
2086 2160 3.784701 TCGGTCAGTAGATTCTTGAGC 57.215 47.619 7.27 7.27 0.00 4.26
2099 2173 2.005451 CAGAGCCTTTTGATCGGTCAG 58.995 52.381 0.00 0.00 35.39 3.51
2128 2202 1.400113 CGCACACGCACATCATCTTTT 60.400 47.619 0.00 0.00 38.40 2.27
2133 2207 2.390599 GGACGCACACGCACATCAT 61.391 57.895 0.00 0.00 45.53 2.45
2200 2274 4.043200 GTGGCGGCCAGTGAAAGC 62.043 66.667 24.58 4.67 32.34 3.51
2308 2403 1.472082 CACAGCACAGGTGTTTGTTCA 59.528 47.619 0.00 0.00 41.72 3.18
2399 2494 1.753078 CTCGGGTCGATCCTCACCA 60.753 63.158 14.05 0.00 34.61 4.17
2414 2511 3.966026 GACGCAAGGGTCCGACTCG 62.966 68.421 6.03 0.00 46.39 4.18
2434 2532 1.957877 CCCTAACAAAGCCCACGAAAA 59.042 47.619 0.00 0.00 0.00 2.29
2501 2599 2.165167 TCGACGTGGTTACCTCTGATT 58.835 47.619 2.07 0.00 0.00 2.57
2510 2608 0.461163 CATGGCCATCGACGTGGTTA 60.461 55.000 17.61 7.42 41.47 2.85
2523 2621 1.002315 ACCAGCAACAAAATCATGGCC 59.998 47.619 0.00 0.00 0.00 5.36
2551 2649 1.596220 GCGTTCACGAACCCACTTTTC 60.596 52.381 2.87 0.00 43.02 2.29
2552 2650 0.379316 GCGTTCACGAACCCACTTTT 59.621 50.000 2.87 0.00 43.02 2.27
2553 2651 0.463116 AGCGTTCACGAACCCACTTT 60.463 50.000 2.87 0.00 43.02 2.66
2554 2652 0.878961 GAGCGTTCACGAACCCACTT 60.879 55.000 2.87 0.00 43.02 3.16
2555 2653 1.300697 GAGCGTTCACGAACCCACT 60.301 57.895 2.87 0.21 43.02 4.00
2556 2654 2.315386 GGAGCGTTCACGAACCCAC 61.315 63.158 2.87 0.00 43.02 4.61
2557 2655 2.029964 GGAGCGTTCACGAACCCA 59.970 61.111 2.87 0.00 43.02 4.51
2597 2717 4.194720 ATCAGTCGGCTCGGACGC 62.195 66.667 0.00 0.00 41.81 5.19
2751 3018 7.680442 TCGTGATTTGAATGAACAATTCCTA 57.320 32.000 0.00 0.00 43.61 2.94
2823 3090 7.562821 GGTACTCTAGGTATTCTTGGTCCTTTA 59.437 40.741 0.00 0.00 32.56 1.85
2833 3100 7.463054 TGTCTTAGGGTACTCTAGGTATTCT 57.537 40.000 11.36 0.00 32.56 2.40
2837 3104 5.253798 TGGTTGTCTTAGGGTACTCTAGGTA 59.746 44.000 11.36 0.53 0.00 3.08
2929 3196 1.813513 CGACTGGTTGCAGATCCTTT 58.186 50.000 0.00 0.00 0.00 3.11
2984 3251 4.742201 GAGGAAGCAGCGTGGCGA 62.742 66.667 0.00 0.00 39.27 5.54
3118 3385 1.930908 GAACCGGTCGGATGACTCGT 61.931 60.000 16.90 0.00 44.83 4.18
3414 3685 1.722464 TGTCGCGTCGGAATAAGTTTG 59.278 47.619 5.77 0.00 0.00 2.93
3485 3756 0.036294 GGTCTGTTCACTAGGTGGGC 60.036 60.000 0.00 0.00 33.87 5.36
3650 3922 9.502091 TCTGCGTAGGATAATAATTTGCTATTT 57.498 29.630 0.00 0.00 0.00 1.40
3651 3923 9.155975 CTCTGCGTAGGATAATAATTTGCTATT 57.844 33.333 0.00 0.00 0.00 1.73
3652 3924 7.766278 CCTCTGCGTAGGATAATAATTTGCTAT 59.234 37.037 0.00 0.00 39.15 2.97
3653 3925 7.097192 CCTCTGCGTAGGATAATAATTTGCTA 58.903 38.462 0.00 0.00 39.15 3.49
3654 3926 5.934625 CCTCTGCGTAGGATAATAATTTGCT 59.065 40.000 0.00 0.00 39.15 3.91
3655 3927 5.701290 ACCTCTGCGTAGGATAATAATTTGC 59.299 40.000 10.93 0.00 39.15 3.68
3656 3928 6.347725 GCACCTCTGCGTAGGATAATAATTTG 60.348 42.308 10.93 0.00 39.15 2.32
3657 3929 5.701290 GCACCTCTGCGTAGGATAATAATTT 59.299 40.000 10.93 0.00 39.15 1.82
3658 3930 5.238583 GCACCTCTGCGTAGGATAATAATT 58.761 41.667 10.93 0.00 39.15 1.40
3659 3931 4.822026 GCACCTCTGCGTAGGATAATAAT 58.178 43.478 10.93 0.00 39.15 1.28
3660 3932 4.252971 GCACCTCTGCGTAGGATAATAA 57.747 45.455 10.93 0.00 39.15 1.40
3661 3933 3.936372 GCACCTCTGCGTAGGATAATA 57.064 47.619 10.93 0.00 39.15 0.98
3662 3934 2.821991 GCACCTCTGCGTAGGATAAT 57.178 50.000 10.93 0.00 39.15 1.28
3672 3944 0.815734 AAAGATGCATGCACCTCTGC 59.184 50.000 25.37 8.37 44.52 4.26
3673 3945 2.366533 AGAAAGATGCATGCACCTCTG 58.633 47.619 25.37 0.00 0.00 3.35
3674 3946 2.803030 AGAAAGATGCATGCACCTCT 57.197 45.000 25.37 20.19 0.00 3.69
3675 3947 2.098770 GGAAGAAAGATGCATGCACCTC 59.901 50.000 25.37 18.03 0.00 3.85
3676 3948 2.097825 GGAAGAAAGATGCATGCACCT 58.902 47.619 25.37 17.82 0.00 4.00
3677 3949 1.202222 CGGAAGAAAGATGCATGCACC 60.202 52.381 25.37 15.05 0.00 5.01
3678 3950 1.470098 ACGGAAGAAAGATGCATGCAC 59.530 47.619 25.37 16.77 0.00 4.57
3721 3993 3.777925 CCAAAGCTCCGCGACACG 61.778 66.667 8.23 0.00 43.15 4.49
3830 4150 2.221981 GCCTGAAGAAGAACAAGACACG 59.778 50.000 0.00 0.00 0.00 4.49
3897 4220 3.303395 GCGCTGTTACCTTTGATATGAGC 60.303 47.826 0.00 0.00 0.00 4.26
3923 4246 6.594159 GCCTATTTCTGCTCAGTAGTAAAACA 59.406 38.462 0.00 0.00 0.00 2.83
3924 4247 6.594159 TGCCTATTTCTGCTCAGTAGTAAAAC 59.406 38.462 0.00 0.00 0.00 2.43
3925 4248 6.594159 GTGCCTATTTCTGCTCAGTAGTAAAA 59.406 38.462 0.00 0.00 0.00 1.52
3926 4249 6.070767 AGTGCCTATTTCTGCTCAGTAGTAAA 60.071 38.462 0.00 0.00 0.00 2.01
3927 4250 5.422331 AGTGCCTATTTCTGCTCAGTAGTAA 59.578 40.000 0.00 0.00 0.00 2.24
3928 4251 4.956700 AGTGCCTATTTCTGCTCAGTAGTA 59.043 41.667 0.00 0.00 0.00 1.82
3929 4252 3.772025 AGTGCCTATTTCTGCTCAGTAGT 59.228 43.478 0.00 0.00 0.00 2.73
3930 4253 4.118410 CAGTGCCTATTTCTGCTCAGTAG 58.882 47.826 0.00 0.00 0.00 2.57
3931 4254 3.515502 ACAGTGCCTATTTCTGCTCAGTA 59.484 43.478 0.00 0.00 33.12 2.74
3932 4255 2.304180 ACAGTGCCTATTTCTGCTCAGT 59.696 45.455 0.00 0.00 33.12 3.41
3933 4256 2.935201 GACAGTGCCTATTTCTGCTCAG 59.065 50.000 0.00 0.00 33.12 3.35
3934 4257 2.302733 TGACAGTGCCTATTTCTGCTCA 59.697 45.455 0.00 0.00 33.12 4.26
3935 4258 2.977914 TGACAGTGCCTATTTCTGCTC 58.022 47.619 0.00 0.00 33.12 4.26
3936 4259 3.341823 CTTGACAGTGCCTATTTCTGCT 58.658 45.455 0.00 0.00 33.12 4.24
3937 4260 2.159462 GCTTGACAGTGCCTATTTCTGC 60.159 50.000 0.00 0.00 33.12 4.26
3962 4285 9.474313 AGATGTGTTCTTCTTCTAGAGATACTT 57.526 33.333 0.00 0.00 33.49 2.24
3964 4287 8.134895 CCAGATGTGTTCTTCTTCTAGAGATAC 58.865 40.741 0.00 0.00 33.49 2.24
3981 4325 0.110486 AAGGAAACGGCCAGATGTGT 59.890 50.000 2.24 0.00 0.00 3.72
3982 4326 0.523072 CAAGGAAACGGCCAGATGTG 59.477 55.000 2.24 0.00 0.00 3.21
3983 4327 0.400213 TCAAGGAAACGGCCAGATGT 59.600 50.000 2.24 0.00 0.00 3.06
3984 4328 1.402968 CATCAAGGAAACGGCCAGATG 59.597 52.381 2.24 0.00 36.82 2.90
3985 4329 1.281867 TCATCAAGGAAACGGCCAGAT 59.718 47.619 2.24 0.00 0.00 2.90
3986 4330 0.690192 TCATCAAGGAAACGGCCAGA 59.310 50.000 2.24 0.00 0.00 3.86
3987 4331 1.089920 CTCATCAAGGAAACGGCCAG 58.910 55.000 2.24 0.00 0.00 4.85
3988 4332 0.960364 GCTCATCAAGGAAACGGCCA 60.960 55.000 2.24 0.00 0.00 5.36
3989 4333 0.678048 AGCTCATCAAGGAAACGGCC 60.678 55.000 0.00 0.00 0.00 6.13
3990 4334 1.135575 CAAGCTCATCAAGGAAACGGC 60.136 52.381 0.00 0.00 0.00 5.68
3991 4335 1.470098 CCAAGCTCATCAAGGAAACGG 59.530 52.381 0.00 0.00 0.00 4.44
4004 4348 5.573337 AGATTTAGAATGCAACCAAGCTC 57.427 39.130 0.00 0.00 34.99 4.09
4005 4349 7.340232 TCATTAGATTTAGAATGCAACCAAGCT 59.660 33.333 0.00 0.00 33.82 3.74
4007 4351 9.459640 CATCATTAGATTTAGAATGCAACCAAG 57.540 33.333 0.00 0.00 33.82 3.61
4009 4353 7.068470 TGCATCATTAGATTTAGAATGCAACCA 59.932 33.333 4.77 0.00 39.20 3.67
4010 4354 7.428020 TGCATCATTAGATTTAGAATGCAACC 58.572 34.615 4.77 0.00 39.20 3.77
4012 4356 7.503230 TCCTGCATCATTAGATTTAGAATGCAA 59.497 33.333 8.28 0.00 41.15 4.08
4014 4358 7.303998 GTCCTGCATCATTAGATTTAGAATGC 58.696 38.462 0.00 0.00 33.82 3.56
4015 4359 7.446319 TGGTCCTGCATCATTAGATTTAGAATG 59.554 37.037 0.00 0.00 34.89 2.67
4016 4360 7.520798 TGGTCCTGCATCATTAGATTTAGAAT 58.479 34.615 0.00 0.00 30.20 2.40
4017 4361 6.899089 TGGTCCTGCATCATTAGATTTAGAA 58.101 36.000 0.00 0.00 30.20 2.10
4019 4363 6.938596 TCATGGTCCTGCATCATTAGATTTAG 59.061 38.462 0.00 0.00 30.20 1.85
4020 4364 6.840527 TCATGGTCCTGCATCATTAGATTTA 58.159 36.000 0.00 0.00 30.20 1.40
4021 4365 5.698104 TCATGGTCCTGCATCATTAGATTT 58.302 37.500 0.00 0.00 30.20 2.17
4022 4366 5.314529 CTCATGGTCCTGCATCATTAGATT 58.685 41.667 0.00 0.00 30.20 2.40
4023 4367 4.806625 GCTCATGGTCCTGCATCATTAGAT 60.807 45.833 0.00 0.00 33.87 1.98
4024 4368 3.495629 GCTCATGGTCCTGCATCATTAGA 60.496 47.826 0.00 0.00 0.00 2.10
4030 4380 1.153289 ACGCTCATGGTCCTGCATC 60.153 57.895 0.00 0.00 0.00 3.91
4093 4443 4.739716 GCTGAATAAGTTGTTGTGTTGTGG 59.260 41.667 0.00 0.00 0.00 4.17
4155 4523 1.230324 GCGGGAGATGGATTAAGCAC 58.770 55.000 0.00 0.00 0.00 4.40
4165 4533 1.312815 GGAGAAAATGGCGGGAGATG 58.687 55.000 0.00 0.00 0.00 2.90
4172 4540 0.457337 GCTTGCTGGAGAAAATGGCG 60.457 55.000 0.00 0.00 0.00 5.69
4219 4587 1.997928 GCTTGGGCTTGAGCGATTCC 61.998 60.000 0.00 0.00 43.26 3.01
4256 4624 2.358737 CGGGCTGAAGCTTTCCGT 60.359 61.111 17.46 0.00 38.16 4.69
4273 4641 2.094700 TGACTGACAGTATCGTTCAGCC 60.095 50.000 8.41 0.00 32.16 4.85
4302 4670 9.683069 AAAAACAGCATCAGTAATTGTTTCTAG 57.317 29.630 1.92 0.00 40.07 2.43
4313 4681 4.136796 AGCAGACAAAAACAGCATCAGTA 58.863 39.130 0.00 0.00 0.00 2.74
4323 4691 6.124088 TCTCTGAAGAAAGCAGACAAAAAC 57.876 37.500 0.00 0.00 37.46 2.43
4329 4697 3.993736 GGAGTTCTCTGAAGAAAGCAGAC 59.006 47.826 0.00 0.00 43.04 3.51
4424 4797 3.003689 AGTGTGAAAAATCCTGCGACTTG 59.996 43.478 0.00 0.00 0.00 3.16
4491 4864 1.450134 CTGCTGCAATGCGACCCTA 60.450 57.895 3.02 0.00 35.36 3.53
4525 4909 1.042559 GCTCACTCCTCTCCTCCCTG 61.043 65.000 0.00 0.00 0.00 4.45
4551 4935 5.627499 TTAGGAGCAGCTAAACAACATTG 57.373 39.130 0.00 0.00 0.00 2.82
4600 4984 2.088423 CCAAGCCAATTTGCATGCAAT 58.912 42.857 32.27 17.10 35.70 3.56
4609 4993 0.760572 AGCAAGTGCCAAGCCAATTT 59.239 45.000 0.00 0.00 43.38 1.82
4662 5046 7.226441 CCATCCAGACTCAATAACCATGATAA 58.774 38.462 0.00 0.00 0.00 1.75
4681 5065 1.969208 TGAAACAGCAAATGCCATCCA 59.031 42.857 0.94 0.00 43.38 3.41
4714 5098 5.969435 GCTTGTTATTTTAGGGCGAACATAC 59.031 40.000 0.00 0.00 30.61 2.39
4718 5102 4.438336 GGAGCTTGTTATTTTAGGGCGAAC 60.438 45.833 0.00 0.00 0.00 3.95
4844 5228 3.454371 ACTGAACCACGACATATAGCC 57.546 47.619 0.00 0.00 0.00 3.93
4871 5255 8.575589 ACAATTAAGTCAGCAACAATGTGATAA 58.424 29.630 0.00 0.00 0.00 1.75
4943 5327 9.895138 AATACGGATAGTATGTTTACTTGGTTT 57.105 29.630 0.00 0.00 44.78 3.27
4947 5331 8.792831 ACGAATACGGATAGTATGTTTACTTG 57.207 34.615 0.00 0.00 44.78 3.16
4980 5364 1.135083 ACGAACTCCAAGCGGATACTG 60.135 52.381 0.00 0.00 41.79 2.74
4982 5366 2.857592 TACGAACTCCAAGCGGATAC 57.142 50.000 0.00 0.00 41.79 2.24
4992 5376 5.182760 ACGGATGTTATAGGATACGAACTCC 59.817 44.000 5.03 0.00 46.39 3.85
4994 5378 6.939163 AGTACGGATGTTATAGGATACGAACT 59.061 38.462 5.03 0.00 46.39 3.01
5015 5400 2.076863 AGCAACTCCAAATGCGAGTAC 58.923 47.619 0.00 0.00 46.98 2.73
5039 5424 9.546428 CCCTTCTCACTTTTGTTTTCATATTTT 57.454 29.630 0.00 0.00 0.00 1.82
5045 5430 3.766591 TGCCCTTCTCACTTTTGTTTTCA 59.233 39.130 0.00 0.00 0.00 2.69
5057 5442 2.369860 AGATCGCATAATGCCCTTCTCA 59.630 45.455 0.00 0.00 41.12 3.27
5060 5445 3.057946 GGAAAGATCGCATAATGCCCTTC 60.058 47.826 0.00 0.00 41.12 3.46
5061 5446 2.887152 GGAAAGATCGCATAATGCCCTT 59.113 45.455 0.00 0.00 41.12 3.95
5072 5459 4.113354 AGAATTAGTCACGGAAAGATCGC 58.887 43.478 0.00 0.00 0.00 4.58
5109 5499 6.037610 GTCGCATCATGAGGTAGATTTTTCTT 59.962 38.462 9.42 0.00 0.00 2.52
5134 5524 1.086696 CACGTATTTGGGCAGACTGG 58.913 55.000 4.26 0.00 0.00 4.00
5135 5525 1.086696 CCACGTATTTGGGCAGACTG 58.913 55.000 0.00 0.00 32.35 3.51
5139 5529 3.866883 AAAATCCACGTATTTGGGCAG 57.133 42.857 0.00 0.00 37.24 4.85
5236 5626 4.912586 TCGTCCAGGATAACCATGAAAAA 58.087 39.130 0.00 0.00 38.94 1.94
5245 5635 2.014857 GGCCTTTTCGTCCAGGATAAC 58.985 52.381 0.00 0.00 30.81 1.89
5252 5642 3.713826 ATTAAGAGGCCTTTTCGTCCA 57.286 42.857 12.63 0.00 33.94 4.02
5321 5712 5.693555 GCAATGAGGAGTTCTTTTCTTTTGG 59.306 40.000 0.00 0.00 0.00 3.28
5346 5737 0.478507 AGGAGGTTTGAGTTGGGTGG 59.521 55.000 0.00 0.00 0.00 4.61
5350 5741 1.003696 GGGAGAGGAGGTTTGAGTTGG 59.996 57.143 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.