Multiple sequence alignment - TraesCS4B01G185400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G185400 chr4B 100.000 7951 0 0 1 7951 404769994 404777944 0.000000e+00 14683.0
1 TraesCS4B01G185400 chr4B 98.889 90 0 1 1483 1572 552237799 552237887 8.260000e-35 159.0
2 TraesCS4B01G185400 chr4B 90.741 54 3 2 5418 5470 204841847 204841795 3.980000e-08 71.3
3 TraesCS4B01G185400 chr4B 85.938 64 5 4 5410 5472 66282305 66282245 1.850000e-06 65.8
4 TraesCS4B01G185400 chr4A 94.892 2134 66 18 3375 5470 147302214 147300086 0.000000e+00 3297.0
5 TraesCS4B01G185400 chr4A 93.344 1818 106 8 1569 3376 147304071 147302259 0.000000e+00 2673.0
6 TraesCS4B01G185400 chr4A 93.790 1739 66 16 5470 7192 147300001 147298289 0.000000e+00 2575.0
7 TraesCS4B01G185400 chr4A 87.952 830 34 31 691 1489 147304862 147304068 0.000000e+00 918.0
8 TraesCS4B01G185400 chr4A 88.281 512 29 13 428 920 147305914 147305415 1.150000e-162 584.0
9 TraesCS4B01G185400 chr4A 85.714 196 13 5 7277 7471 147297720 147297539 8.140000e-45 193.0
10 TraesCS4B01G185400 chr4A 90.909 110 8 2 1464 1572 16245924 16246032 6.430000e-31 147.0
11 TraesCS4B01G185400 chr4A 96.721 61 0 1 7214 7274 147297893 147297835 5.080000e-17 100.0
12 TraesCS4B01G185400 chr4D 95.532 1880 62 9 5489 7349 324228888 324230764 0.000000e+00 2987.0
13 TraesCS4B01G185400 chr4D 93.958 1804 96 8 1569 3365 324224805 324226602 0.000000e+00 2715.0
14 TraesCS4B01G185400 chr4D 97.953 1026 21 0 3375 4400 324226686 324227711 0.000000e+00 1779.0
15 TraesCS4B01G185400 chr4D 91.193 1215 36 17 289 1489 324223651 324224808 0.000000e+00 1585.0
16 TraesCS4B01G185400 chr4D 91.149 949 67 10 4421 5360 324227844 324228784 0.000000e+00 1271.0
17 TraesCS4B01G185400 chr4D 92.735 468 34 0 7484 7951 324234337 324234804 0.000000e+00 676.0
18 TraesCS4B01G185400 chr4D 95.397 239 5 4 54 290 324223451 324223685 7.530000e-100 375.0
19 TraesCS4B01G185400 chr4D 90.506 158 12 2 7484 7639 310115563 310115719 1.050000e-48 206.0
20 TraesCS4B01G185400 chr4D 95.789 95 4 0 7333 7427 324233404 324233498 3.840000e-33 154.0
21 TraesCS4B01G185400 chr4D 90.991 111 7 3 1463 1572 476207230 476207122 6.430000e-31 147.0
22 TraesCS4B01G185400 chr4D 96.429 56 2 0 5360 5415 324228827 324228882 8.500000e-15 93.5
23 TraesCS4B01G185400 chr4D 88.333 60 5 2 5418 5476 232674518 232674460 3.980000e-08 71.3
24 TraesCS4B01G185400 chr4D 89.130 46 5 0 2770 2815 396240106 396240061 3.100000e-04 58.4
25 TraesCS4B01G185400 chr2A 88.544 419 39 5 2842 3253 432589870 432590286 4.280000e-137 499.0
26 TraesCS4B01G185400 chr2A 89.200 250 20 3 2842 3085 736307179 736307427 1.000000e-78 305.0
27 TraesCS4B01G185400 chr2A 84.524 168 23 2 7477 7642 753683010 753682844 6.380000e-36 163.0
28 TraesCS4B01G185400 chr2D 87.407 405 42 5 2865 3266 327621520 327621918 2.620000e-124 457.0
29 TraesCS4B01G185400 chr2D 90.800 250 17 2 2842 3085 604678961 604679210 5.950000e-86 329.0
30 TraesCS4B01G185400 chr2D 90.800 250 16 4 2842 3085 605110021 605110269 2.140000e-85 327.0
31 TraesCS4B01G185400 chr2B 87.302 378 41 3 2865 3240 396955150 396955522 7.370000e-115 425.0
32 TraesCS4B01G185400 chr2B 87.059 170 18 3 7475 7642 800132998 800132831 1.050000e-43 189.0
33 TraesCS4B01G185400 chr2B 85.535 159 21 1 7483 7639 772373028 772373186 1.780000e-36 165.0
34 TraesCS4B01G185400 chr2B 87.931 58 5 2 5415 5471 601738341 601738397 5.150000e-07 67.6
35 TraesCS4B01G185400 chr1D 89.441 161 15 1 7484 7642 416845226 416845066 1.350000e-47 202.0
36 TraesCS4B01G185400 chr1D 79.710 138 25 3 7743 7878 86883286 86883422 6.570000e-16 97.1
37 TraesCS4B01G185400 chr1A 87.805 164 17 2 7481 7642 514139147 514138985 1.050000e-43 189.0
38 TraesCS4B01G185400 chr1A 91.589 107 7 2 1477 1583 426017687 426017791 6.430000e-31 147.0
39 TraesCS4B01G185400 chr7A 86.667 165 18 3 7480 7642 156565093 156564931 6.340000e-41 180.0
40 TraesCS4B01G185400 chr5A 86.420 162 20 1 7480 7639 561692312 561692151 8.200000e-40 176.0
41 TraesCS4B01G185400 chr6B 100.000 89 0 0 1484 1572 206866811 206866723 1.780000e-36 165.0
42 TraesCS4B01G185400 chr6B 96.842 95 1 2 1480 1573 280098716 280098623 2.970000e-34 158.0
43 TraesCS4B01G185400 chr7D 96.809 94 3 0 1479 1572 503323185 503323092 2.970000e-34 158.0
44 TraesCS4B01G185400 chr7D 84.000 75 6 6 5399 5471 187254614 187254544 5.150000e-07 67.6
45 TraesCS4B01G185400 chr7D 86.667 60 6 2 5418 5476 367096873 367096815 1.850000e-06 65.8
46 TraesCS4B01G185400 chr3B 96.809 94 3 0 1480 1573 558519755 558519848 2.970000e-34 158.0
47 TraesCS4B01G185400 chr3B 94.643 56 3 0 5415 5470 250805010 250805065 3.950000e-13 87.9
48 TraesCS4B01G185400 chr3D 94.898 98 5 0 1486 1583 129678003 129678100 3.840000e-33 154.0
49 TraesCS4B01G185400 chr3D 94.545 55 3 0 5417 5471 524713715 524713661 1.420000e-12 86.1
50 TraesCS4B01G185400 chr1B 90.566 53 5 0 5418 5470 316256246 316256194 3.980000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G185400 chr4B 404769994 404777944 7950 False 14683.000000 14683 100.000000 1 7951 1 chr4B.!!$F1 7950
1 TraesCS4B01G185400 chr4A 147297539 147305914 8375 True 1477.142857 3297 91.527714 428 7471 7 chr4A.!!$R1 7043
2 TraesCS4B01G185400 chr4D 324223451 324234804 11353 False 1292.833333 2987 94.459444 54 7951 9 chr4D.!!$F2 7897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1726 0.529773 AAAGTCACACGAGCGAGCAA 60.530 50.000 0.00 0.0 0.00 3.91 F
1487 2324 0.112218 TGGCCATGTGGTTGCTTAGT 59.888 50.000 0.00 0.0 37.57 2.24 F
2952 3796 0.032813 CAATCCCCCAGCCATGTCTT 60.033 55.000 0.00 0.0 0.00 3.01 F
3311 4160 1.341383 GGCCATCTGGGAGTTGATTGT 60.341 52.381 0.00 0.0 40.01 2.71 F
4229 5153 0.170116 GGAAAATGAACGATGGCGCA 59.830 50.000 10.83 0.0 42.48 6.09 F
5534 6718 0.889994 TGGACCATTGCTGTTCATGC 59.110 50.000 0.00 0.0 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2781 3621 1.550524 CACCCTTCTCCATCAGTTCGA 59.449 52.381 0.00 0.00 0.00 3.71 R
3115 3959 0.689745 TAGTGAGGGGACGGATTGGG 60.690 60.000 0.00 0.00 0.00 4.12 R
3848 4772 1.527311 GACGAGTGCTCCAACAGAAAC 59.473 52.381 0.00 0.00 0.00 2.78 R
4749 5785 2.159085 CCAGAACCCAGGATCGTTCTAC 60.159 54.545 11.79 0.00 45.33 2.59 R
5790 6992 1.710013 CGTATGAACGTTGTGGCTCT 58.290 50.000 5.00 0.00 44.21 4.09 R
7420 11781 0.040499 AATTCCCAAGGGCGCCTTAA 59.960 50.000 28.56 10.51 42.67 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.616313 AGAAAATACTGTAGAAGACAAGAGGG 58.384 38.462 0.00 0.00 37.70 4.30
26 27 7.455008 AGAAAATACTGTAGAAGACAAGAGGGA 59.545 37.037 0.00 0.00 37.70 4.20
27 28 6.783708 AATACTGTAGAAGACAAGAGGGAG 57.216 41.667 0.00 0.00 37.70 4.30
28 29 4.390129 ACTGTAGAAGACAAGAGGGAGA 57.610 45.455 0.00 0.00 37.70 3.71
29 30 4.083565 ACTGTAGAAGACAAGAGGGAGAC 58.916 47.826 0.00 0.00 37.70 3.36
30 31 4.082845 CTGTAGAAGACAAGAGGGAGACA 58.917 47.826 0.00 0.00 37.70 3.41
31 32 4.082845 TGTAGAAGACAAGAGGGAGACAG 58.917 47.826 0.00 0.00 34.15 3.51
32 33 3.534357 AGAAGACAAGAGGGAGACAGA 57.466 47.619 0.00 0.00 0.00 3.41
33 34 3.850752 AGAAGACAAGAGGGAGACAGAA 58.149 45.455 0.00 0.00 0.00 3.02
34 35 3.576550 AGAAGACAAGAGGGAGACAGAAC 59.423 47.826 0.00 0.00 0.00 3.01
35 36 2.964209 AGACAAGAGGGAGACAGAACA 58.036 47.619 0.00 0.00 0.00 3.18
36 37 2.630580 AGACAAGAGGGAGACAGAACAC 59.369 50.000 0.00 0.00 0.00 3.32
37 38 1.341531 ACAAGAGGGAGACAGAACACG 59.658 52.381 0.00 0.00 0.00 4.49
38 39 1.613925 CAAGAGGGAGACAGAACACGA 59.386 52.381 0.00 0.00 0.00 4.35
39 40 1.996798 AGAGGGAGACAGAACACGAA 58.003 50.000 0.00 0.00 0.00 3.85
40 41 1.614413 AGAGGGAGACAGAACACGAAC 59.386 52.381 0.00 0.00 0.00 3.95
41 42 1.614413 GAGGGAGACAGAACACGAACT 59.386 52.381 0.00 0.00 0.00 3.01
42 43 1.614413 AGGGAGACAGAACACGAACTC 59.386 52.381 0.00 0.00 0.00 3.01
43 44 1.614413 GGGAGACAGAACACGAACTCT 59.386 52.381 0.00 0.00 0.00 3.24
44 45 2.036089 GGGAGACAGAACACGAACTCTT 59.964 50.000 0.00 0.00 0.00 2.85
45 46 3.053455 GGAGACAGAACACGAACTCTTG 58.947 50.000 0.00 0.00 0.00 3.02
46 47 2.473235 GAGACAGAACACGAACTCTTGC 59.527 50.000 0.00 0.00 0.00 4.01
47 48 2.101582 AGACAGAACACGAACTCTTGCT 59.898 45.455 0.00 0.00 0.00 3.91
48 49 2.866762 GACAGAACACGAACTCTTGCTT 59.133 45.455 0.00 0.00 0.00 3.91
49 50 2.866762 ACAGAACACGAACTCTTGCTTC 59.133 45.455 0.00 0.00 0.00 3.86
50 51 3.126831 CAGAACACGAACTCTTGCTTCT 58.873 45.455 0.00 0.00 0.00 2.85
51 52 3.060003 CAGAACACGAACTCTTGCTTCTG 60.060 47.826 0.00 10.83 32.80 3.02
52 53 2.604046 ACACGAACTCTTGCTTCTGT 57.396 45.000 0.00 0.00 0.00 3.41
95 97 4.248058 TCTAGTCTTGTGTGATGTGCATG 58.752 43.478 0.00 0.00 0.00 4.06
175 177 3.499737 GTCCCACCAAGCGCATCG 61.500 66.667 11.47 0.00 0.00 3.84
198 200 6.470235 TCGTTTTCTTAGAAACCGTATCGATC 59.530 38.462 20.55 0.00 36.42 3.69
222 225 7.772166 TCTGAATCTCGTGTGTTATGACTATT 58.228 34.615 0.00 0.00 0.00 1.73
256 259 1.975363 GCATCGTGGCTTGACAGAGC 61.975 60.000 2.19 2.19 41.96 4.09
297 300 3.896648 TTTTGACAATCGAGTGGAAGC 57.103 42.857 18.14 4.26 0.00 3.86
298 301 1.808411 TTGACAATCGAGTGGAAGCC 58.192 50.000 18.14 1.65 0.00 4.35
299 302 0.976641 TGACAATCGAGTGGAAGCCT 59.023 50.000 18.14 0.00 0.00 4.58
300 303 2.176045 TGACAATCGAGTGGAAGCCTA 58.824 47.619 18.14 0.00 0.00 3.93
301 304 2.565391 TGACAATCGAGTGGAAGCCTAA 59.435 45.455 18.14 0.00 0.00 2.69
302 305 3.190874 GACAATCGAGTGGAAGCCTAAG 58.809 50.000 18.14 0.00 0.00 2.18
303 306 2.567615 ACAATCGAGTGGAAGCCTAAGT 59.432 45.455 18.14 0.00 0.00 2.24
304 307 3.008049 ACAATCGAGTGGAAGCCTAAGTT 59.992 43.478 18.14 0.00 0.00 2.66
305 308 3.983044 ATCGAGTGGAAGCCTAAGTTT 57.017 42.857 0.00 0.00 0.00 2.66
306 309 3.764237 TCGAGTGGAAGCCTAAGTTTT 57.236 42.857 0.00 0.00 0.00 2.43
307 310 4.081322 TCGAGTGGAAGCCTAAGTTTTT 57.919 40.909 0.00 0.00 0.00 1.94
368 371 3.882888 AGAAGCTTCGATTTGTTTGGACA 59.117 39.130 20.43 0.00 0.00 4.02
608 633 1.752501 CGGTACAGAGCGGCGAATTG 61.753 60.000 12.98 7.28 42.86 2.32
609 634 1.348594 GTACAGAGCGGCGAATTGC 59.651 57.895 12.98 0.00 45.38 3.56
618 643 2.648724 GCGAATTGCGTGATGGCG 60.649 61.111 0.00 0.00 43.41 5.69
888 1696 1.134250 TCCCATTTGATCGGCGATTCA 60.134 47.619 24.81 18.96 0.00 2.57
916 1724 0.939577 TCAAAGTCACACGAGCGAGC 60.940 55.000 0.00 0.00 0.00 5.03
917 1725 1.067416 AAAGTCACACGAGCGAGCA 59.933 52.632 0.00 0.00 0.00 4.26
918 1726 0.529773 AAAGTCACACGAGCGAGCAA 60.530 50.000 0.00 0.00 0.00 3.91
919 1727 1.215655 AAGTCACACGAGCGAGCAAC 61.216 55.000 0.00 0.00 0.00 4.17
920 1728 1.949133 GTCACACGAGCGAGCAACA 60.949 57.895 0.00 0.00 0.00 3.33
921 1729 1.949133 TCACACGAGCGAGCAACAC 60.949 57.895 0.00 0.00 0.00 3.32
922 1730 2.106131 ACACGAGCGAGCAACACA 59.894 55.556 0.00 0.00 0.00 3.72
923 1731 1.520564 ACACGAGCGAGCAACACAA 60.521 52.632 0.00 0.00 0.00 3.33
924 1732 1.202568 CACGAGCGAGCAACACAAG 59.797 57.895 0.00 0.00 0.00 3.16
934 1742 1.103398 GCAACACAAGCCACTCAGGT 61.103 55.000 0.00 0.00 40.61 4.00
939 1747 1.131638 ACAAGCCACTCAGGTGAGAA 58.868 50.000 13.99 0.00 45.61 2.87
945 1753 2.353605 GCCACTCAGGTGAGAAAGAGAG 60.354 54.545 13.99 0.00 45.61 3.20
946 1754 3.161067 CCACTCAGGTGAGAAAGAGAGA 58.839 50.000 13.99 0.00 45.61 3.10
947 1755 3.193267 CCACTCAGGTGAGAAAGAGAGAG 59.807 52.174 13.99 0.00 45.61 3.20
948 1756 4.078537 CACTCAGGTGAGAAAGAGAGAGA 58.921 47.826 13.99 0.00 45.61 3.10
949 1757 4.156556 CACTCAGGTGAGAAAGAGAGAGAG 59.843 50.000 13.99 0.00 45.61 3.20
950 1758 4.042809 ACTCAGGTGAGAAAGAGAGAGAGA 59.957 45.833 13.99 0.00 44.74 3.10
951 1759 4.588899 TCAGGTGAGAAAGAGAGAGAGAG 58.411 47.826 0.00 0.00 0.00 3.20
952 1760 4.288366 TCAGGTGAGAAAGAGAGAGAGAGA 59.712 45.833 0.00 0.00 0.00 3.10
953 1761 4.637534 CAGGTGAGAAAGAGAGAGAGAGAG 59.362 50.000 0.00 0.00 0.00 3.20
959 1767 6.127225 TGAGAAAGAGAGAGAGAGAGAGAGAG 60.127 46.154 0.00 0.00 0.00 3.20
963 1771 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
964 1772 5.598005 AGAGAGAGAGAGAGAGAGAGAGAAG 59.402 48.000 0.00 0.00 0.00 2.85
1334 2160 1.684248 GCCGTACCTCCCTAGACTTGA 60.684 57.143 0.00 0.00 0.00 3.02
1356 2182 2.029290 ACGCTCGTGTCCTATCAACTTT 60.029 45.455 0.00 0.00 0.00 2.66
1357 2183 3.192001 ACGCTCGTGTCCTATCAACTTTA 59.808 43.478 0.00 0.00 0.00 1.85
1358 2184 3.546670 CGCTCGTGTCCTATCAACTTTAC 59.453 47.826 0.00 0.00 0.00 2.01
1359 2185 4.491676 GCTCGTGTCCTATCAACTTTACA 58.508 43.478 0.00 0.00 0.00 2.41
1369 2195 6.371548 TCCTATCAACTTTACAACACATCAGC 59.628 38.462 0.00 0.00 0.00 4.26
1398 2235 6.278363 ACGAACTTGTATAAGTGTGTCAGTT 58.722 36.000 5.55 0.00 46.14 3.16
1418 2255 4.760204 AGTTGAGACCCGAAGTTATTTTGG 59.240 41.667 0.00 0.00 39.72 3.28
1486 2323 1.255882 TTGGCCATGTGGTTGCTTAG 58.744 50.000 6.09 0.00 37.57 2.18
1487 2324 0.112218 TGGCCATGTGGTTGCTTAGT 59.888 50.000 0.00 0.00 37.57 2.24
1488 2325 1.352687 TGGCCATGTGGTTGCTTAGTA 59.647 47.619 0.00 0.00 37.57 1.82
1489 2326 1.743394 GGCCATGTGGTTGCTTAGTAC 59.257 52.381 0.00 0.00 37.57 2.73
1490 2327 2.618045 GGCCATGTGGTTGCTTAGTACT 60.618 50.000 0.00 0.00 37.57 2.73
1491 2328 2.678336 GCCATGTGGTTGCTTAGTACTC 59.322 50.000 0.00 0.00 37.57 2.59
1492 2329 3.270877 CCATGTGGTTGCTTAGTACTCC 58.729 50.000 0.00 0.00 0.00 3.85
1493 2330 3.270877 CATGTGGTTGCTTAGTACTCCC 58.729 50.000 0.00 0.00 0.00 4.30
1494 2331 2.616524 TGTGGTTGCTTAGTACTCCCT 58.383 47.619 0.00 0.00 0.00 4.20
1495 2332 2.565834 TGTGGTTGCTTAGTACTCCCTC 59.434 50.000 0.00 0.00 0.00 4.30
1496 2333 2.093606 GTGGTTGCTTAGTACTCCCTCC 60.094 54.545 0.00 0.00 0.00 4.30
1497 2334 1.136500 GGTTGCTTAGTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
1498 2335 1.823610 GTTGCTTAGTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
1499 2336 3.019564 GTTGCTTAGTACTCCCTCCGTA 58.980 50.000 0.00 0.00 0.00 4.02
1500 2337 3.370840 TGCTTAGTACTCCCTCCGTAA 57.629 47.619 0.00 0.00 0.00 3.18
1501 2338 3.700538 TGCTTAGTACTCCCTCCGTAAA 58.299 45.455 0.00 0.00 0.00 2.01
1502 2339 3.445096 TGCTTAGTACTCCCTCCGTAAAC 59.555 47.826 0.00 0.00 0.00 2.01
1503 2340 3.698539 GCTTAGTACTCCCTCCGTAAACT 59.301 47.826 0.00 0.00 0.00 2.66
1504 2341 4.884164 GCTTAGTACTCCCTCCGTAAACTA 59.116 45.833 0.00 0.00 0.00 2.24
1505 2342 5.358160 GCTTAGTACTCCCTCCGTAAACTAA 59.642 44.000 0.00 0.00 0.00 2.24
1506 2343 6.040278 GCTTAGTACTCCCTCCGTAAACTAAT 59.960 42.308 0.00 0.00 0.00 1.73
1507 2344 7.229506 GCTTAGTACTCCCTCCGTAAACTAATA 59.770 40.741 0.00 0.00 0.00 0.98
1508 2345 9.294614 CTTAGTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
1511 2348 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1512 2349 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1513 2350 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1514 2351 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1515 2352 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1516 2353 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1517 2354 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1518 2355 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1545 2382 9.733219 AGATCACTACTTTAGTTATCTAAACGC 57.267 33.333 7.85 0.00 43.99 4.84
1546 2383 9.733219 GATCACTACTTTAGTTATCTAAACGCT 57.267 33.333 2.47 0.00 40.05 5.07
1547 2384 9.733219 ATCACTACTTTAGTTATCTAAACGCTC 57.267 33.333 2.47 0.00 40.05 5.03
1548 2385 8.954350 TCACTACTTTAGTTATCTAAACGCTCT 58.046 33.333 2.47 0.00 40.05 4.09
1549 2386 9.570488 CACTACTTTAGTTATCTAAACGCTCTT 57.430 33.333 2.47 0.00 40.05 2.85
1566 2403 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1567 2404 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1568 2405 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1585 2422 5.925397 CAGAGGGAGTAAGATCGATCAAATG 59.075 44.000 26.47 7.11 0.00 2.32
1591 2428 6.355397 AGTAAGATCGATCAAATGTTGCAG 57.645 37.500 26.47 0.00 0.00 4.41
1681 2518 9.651718 GATAAAATTCAGTTGGTATTTAGCTCG 57.348 33.333 0.00 0.00 0.00 5.03
1686 2523 3.307242 CAGTTGGTATTTAGCTCGAGTGC 59.693 47.826 15.13 0.56 0.00 4.40
1701 2538 1.068588 GAGTGCCGTACCATATCTGCA 59.931 52.381 0.00 0.00 0.00 4.41
1730 2567 9.941664 CAAATAATGGACTGAAATGTGTAGATC 57.058 33.333 0.00 0.00 0.00 2.75
1734 2571 6.065976 TGGACTGAAATGTGTAGATCCAAT 57.934 37.500 0.00 0.00 32.13 3.16
1756 2593 2.241160 TCGCACAAGTGTAAGGACCTA 58.759 47.619 0.00 0.00 0.00 3.08
1770 2607 3.240302 AGGACCTAGCTATACCGCATTT 58.760 45.455 0.00 0.00 0.00 2.32
1806 2644 8.801882 AACAAATATAGAAACTTCCCATTCGA 57.198 30.769 0.00 0.00 0.00 3.71
1827 2665 3.648339 TCATTCAAACTTGCCTTGAGC 57.352 42.857 0.00 0.00 44.14 4.26
1933 2771 4.081697 CCTATTGAACCCAATGTTTGACCC 60.082 45.833 0.00 0.00 42.55 4.46
2007 2845 8.062065 TGTTTGAATTCCATATAACAGTTCCC 57.938 34.615 2.27 0.00 0.00 3.97
2009 2847 6.334378 TGAATTCCATATAACAGTTCCCCA 57.666 37.500 2.27 0.00 0.00 4.96
2140 2979 4.475016 ACAAGTGAAAGGACCTGGCTATAT 59.525 41.667 0.00 0.00 0.00 0.86
2149 2988 4.223923 AGGACCTGGCTATATGCATTCTAC 59.776 45.833 3.54 0.00 45.15 2.59
2150 2989 4.223923 GGACCTGGCTATATGCATTCTACT 59.776 45.833 3.54 0.00 45.15 2.57
2155 2994 4.158579 TGGCTATATGCATTCTACTCGGAG 59.841 45.833 3.54 2.83 45.15 4.63
2197 3036 3.435327 TCCATTCGACCATTCAAAGTTCG 59.565 43.478 0.00 0.00 0.00 3.95
2201 3040 2.803956 TCGACCATTCAAAGTTCGAACC 59.196 45.455 24.22 7.13 0.00 3.62
2257 3096 5.182950 AGTCAGGAATAGATAGCATCTCGTG 59.817 44.000 2.47 2.70 40.76 4.35
2288 3127 9.620660 ACTTACGCTACCTTCAAATTTTTATTG 57.379 29.630 0.00 0.00 0.00 1.90
2370 3210 5.535333 ACGTTATTTTCGGAGAGTCAGAAA 58.465 37.500 0.00 0.00 38.45 2.52
2371 3211 6.164176 ACGTTATTTTCGGAGAGTCAGAAAT 58.836 36.000 3.57 3.26 39.55 2.17
2410 3250 6.018180 CGTTATTCCCTTATGCTACCTTCAAC 60.018 42.308 0.00 0.00 0.00 3.18
2457 3297 3.950395 GTCATAAATGAGCTTTCAGCCCT 59.050 43.478 0.00 0.00 43.77 5.19
2483 3323 6.767902 TGGATTTCTTGTAACAGATATGAGGC 59.232 38.462 0.00 0.00 0.00 4.70
2500 3340 3.073503 TGAGGCCCCATCATTTGATAGAG 59.926 47.826 0.00 0.00 32.63 2.43
2529 3369 2.647299 AGATGGGTGGGTGAATGTTGTA 59.353 45.455 0.00 0.00 0.00 2.41
2539 3379 5.063880 GGGTGAATGTTGTACTTCTTCAGT 58.936 41.667 0.00 0.00 39.87 3.41
2552 3392 4.039852 ACTTCTTCAGTCCTCAACTTCTCC 59.960 45.833 0.00 0.00 35.45 3.71
2657 3497 7.613022 AGATTTGATGGTTCACATGAATACAGT 59.387 33.333 0.00 0.00 40.72 3.55
2658 3498 7.523293 TTTGATGGTTCACATGAATACAGTT 57.477 32.000 0.00 0.00 40.72 3.16
2781 3621 2.030805 GCAGCGAGTTCATCCAAAAGTT 60.031 45.455 0.00 0.00 0.00 2.66
2950 3794 0.324645 AACAATCCCCCAGCCATGTC 60.325 55.000 0.00 0.00 0.00 3.06
2952 3796 0.032813 CAATCCCCCAGCCATGTCTT 60.033 55.000 0.00 0.00 0.00 3.01
3077 3921 6.129179 ACCCCATTTCTAGACCAATACATTG 58.871 40.000 0.00 0.00 37.52 2.82
3123 3967 3.554934 TCAATCAGAATTCCCCAATCCG 58.445 45.455 0.65 0.00 0.00 4.18
3149 3993 9.190317 GTCCCCTCACTATCAAAATATCTTTTT 57.810 33.333 0.00 0.00 32.21 1.94
3261 4109 5.221303 CCAGTTGGCAAGGTGATATTTATGG 60.221 44.000 0.00 0.00 0.00 2.74
3268 4116 7.949565 TGGCAAGGTGATATTTATGGTTATCAT 59.050 33.333 0.00 0.00 37.22 2.45
3311 4160 1.341383 GGCCATCTGGGAGTTGATTGT 60.341 52.381 0.00 0.00 40.01 2.71
3425 4349 4.875536 ACGCAATTTATCATAGTGCAGTGA 59.124 37.500 3.69 1.26 34.87 3.41
3481 4405 3.719924 TGGCAACAGAAAATTTGAGCAG 58.280 40.909 0.00 0.00 46.17 4.24
3496 4420 5.947228 TTGAGCAGAAGATTTACAACCTG 57.053 39.130 0.00 0.00 0.00 4.00
3612 4536 4.206375 TGCAGAAATCACCTTGAAGACAA 58.794 39.130 0.00 0.00 34.65 3.18
3848 4772 1.164411 TAAATGCTCCCACTGTTGCG 58.836 50.000 0.00 0.00 0.00 4.85
3966 4890 6.048732 AGAAAGGTTCTTTCAAAAAGCCAA 57.951 33.333 18.75 0.00 36.36 4.52
4040 4964 0.250234 TGAGAACAGGGGCAATCGAG 59.750 55.000 0.00 0.00 0.00 4.04
4229 5153 0.170116 GGAAAATGAACGATGGCGCA 59.830 50.000 10.83 0.00 42.48 6.09
4349 5273 5.864474 GGTATGCCTCACTATCTTGTAATCG 59.136 44.000 0.00 0.00 0.00 3.34
4405 5329 8.927675 TGTCTGTAACATAAACCCTGTAAAAT 57.072 30.769 0.00 0.00 31.20 1.82
4406 5330 9.357161 TGTCTGTAACATAAACCCTGTAAAATT 57.643 29.630 0.00 0.00 31.20 1.82
4407 5331 9.836076 GTCTGTAACATAAACCCTGTAAAATTC 57.164 33.333 0.00 0.00 0.00 2.17
4408 5332 9.575868 TCTGTAACATAAACCCTGTAAAATTCA 57.424 29.630 0.00 0.00 0.00 2.57
4419 5372 9.679661 AACCCTGTAAAATTCATTTCAAAAAGT 57.320 25.926 0.00 0.00 32.27 2.66
4444 5480 6.292389 ACTCACGAAATATAATGCTTCAGC 57.708 37.500 0.00 0.00 42.50 4.26
4506 5542 7.956328 ATAGAACAGTAAGTATGAGACCACA 57.044 36.000 0.00 0.00 0.00 4.17
4749 5785 9.970395 AATATGACACCAACATATGCAAAATAG 57.030 29.630 1.58 0.00 39.75 1.73
4802 5838 7.169813 CCATTCTCCAAAACTTAGCAAAAGAAC 59.830 37.037 5.89 0.00 0.00 3.01
4806 5842 6.692486 TCCAAAACTTAGCAAAAGAACAACA 58.308 32.000 5.89 0.00 0.00 3.33
5072 6113 7.039082 ACAAATACCTATCTGCATGGTTTGTTT 60.039 33.333 6.23 4.32 33.56 2.83
5201 6243 3.976701 AAAGGATGGCCTCGCACGG 62.977 63.158 3.32 0.00 46.28 4.94
5232 6274 5.431765 CCCAAGTAGTAGAATCAGTGCAAT 58.568 41.667 0.00 0.00 0.00 3.56
5245 6289 1.086696 GTGCAATACGTGGTCTGCAT 58.913 50.000 15.52 0.00 45.77 3.96
5278 6323 8.954950 TGATTACTTTCCTGATCTCTTGATTC 57.045 34.615 0.00 0.00 32.19 2.52
5279 6324 8.766476 TGATTACTTTCCTGATCTCTTGATTCT 58.234 33.333 0.00 0.00 32.19 2.40
5398 6486 4.704057 TGTGATGCAGTTGCCACATAAATA 59.296 37.500 10.73 0.00 37.96 1.40
5404 6492 6.876155 TGCAGTTGCCACATAAATAAATGAT 58.124 32.000 1.06 0.00 41.18 2.45
5427 6515 9.837681 TGATTAAGATAACATATACTCCCTCCA 57.162 33.333 0.00 0.00 0.00 3.86
5431 6519 2.011122 ACATATACTCCCTCCACCCG 57.989 55.000 0.00 0.00 0.00 5.28
5432 6520 1.267121 CATATACTCCCTCCACCCGG 58.733 60.000 0.00 0.00 0.00 5.73
5477 6573 8.957466 TGTCTAGATACGGATGTATAATTCAGG 58.043 37.037 0.00 0.00 41.37 3.86
5479 6575 9.922477 TCTAGATACGGATGTATAATTCAGGAT 57.078 33.333 0.00 0.00 41.37 3.24
5521 6702 5.423886 GTTGAAAACTTGGAATTTGGACCA 58.576 37.500 0.00 0.00 45.32 4.02
5530 6714 3.006752 TGGAATTTGGACCATTGCTGTTC 59.993 43.478 0.00 0.00 0.00 3.18
5534 6718 0.889994 TGGACCATTGCTGTTCATGC 59.110 50.000 0.00 0.00 0.00 4.06
5538 6722 2.689471 GACCATTGCTGTTCATGCCATA 59.311 45.455 0.00 0.00 0.00 2.74
5557 6741 5.072055 CCATATGATTATGCACCCAGTTCA 58.928 41.667 3.65 0.00 34.94 3.18
5570 6754 2.288395 CCCAGTTCATTGCCAACTTGAC 60.288 50.000 0.00 0.00 31.40 3.18
5574 6758 3.130340 AGTTCATTGCCAACTTGACGTTT 59.870 39.130 0.00 0.00 32.27 3.60
5575 6759 3.347958 TCATTGCCAACTTGACGTTTC 57.652 42.857 0.00 0.00 32.27 2.78
5582 6766 3.003897 GCCAACTTGACGTTTCACCATAA 59.996 43.478 0.00 0.00 32.27 1.90
5602 6803 6.183360 CCATAACGATTAGTTTTACTGCACGT 60.183 38.462 0.00 0.00 43.86 4.49
5611 6812 5.982324 AGTTTTACTGCACGTTTAGCTTAC 58.018 37.500 0.00 0.00 0.00 2.34
5619 6820 3.838550 GCACGTTTAGCTTACGATTTGTG 59.161 43.478 22.76 13.35 41.33 3.33
5625 6826 6.478588 GTTTAGCTTACGATTTGTGATCCAG 58.521 40.000 0.00 0.00 0.00 3.86
5652 6853 5.909610 GCTAGTAACAAGAACTTGCTTTGTG 59.090 40.000 13.50 3.56 44.03 3.33
5660 6861 6.318648 ACAAGAACTTGCTTTGTGATGAACTA 59.681 34.615 13.50 0.00 44.03 2.24
5662 6863 5.239525 AGAACTTGCTTTGTGATGAACTACC 59.760 40.000 0.00 0.00 0.00 3.18
5664 6865 5.865085 ACTTGCTTTGTGATGAACTACCTA 58.135 37.500 0.00 0.00 0.00 3.08
5674 6875 8.514330 TGTGATGAACTACCTAAAACAAGTTT 57.486 30.769 0.00 0.00 32.51 2.66
5683 6884 6.084326 ACCTAAAACAAGTTTGGCATACTG 57.916 37.500 11.40 8.30 32.36 2.74
5758 6960 3.677156 AAGGGATTTAGCTTGGCTGAT 57.323 42.857 0.00 0.00 40.10 2.90
5765 6967 5.008514 GGATTTAGCTTGGCTGATCTTCTTC 59.991 44.000 0.00 0.00 40.10 2.87
5766 6968 4.833478 TTAGCTTGGCTGATCTTCTTCT 57.167 40.909 0.00 0.00 40.10 2.85
5767 6969 3.717452 AGCTTGGCTGATCTTCTTCTT 57.283 42.857 0.00 0.00 37.57 2.52
5773 6975 4.147321 TGGCTGATCTTCTTCTTTTTGCT 58.853 39.130 0.00 0.00 0.00 3.91
5790 6992 2.456577 TGCTGCTCAGTAGGATACACA 58.543 47.619 0.00 0.00 46.26 3.72
5931 7133 7.710475 ACCACTTGTATTGATTTTGAACTTTGG 59.290 33.333 0.00 0.00 0.00 3.28
5933 7135 7.925483 CACTTGTATTGATTTTGAACTTTGGGA 59.075 33.333 0.00 0.00 0.00 4.37
5934 7136 8.650490 ACTTGTATTGATTTTGAACTTTGGGAT 58.350 29.630 0.00 0.00 0.00 3.85
6404 7606 3.827898 CTGGAGGGGCTCGACGTC 61.828 72.222 5.18 5.18 0.00 4.34
6405 7607 4.361971 TGGAGGGGCTCGACGTCT 62.362 66.667 14.70 0.00 0.00 4.18
6899 8101 4.191544 CGGGTAAGATCAAGAAGCATGAA 58.808 43.478 0.00 0.00 0.00 2.57
7311 9009 5.629435 CGAGTTTGTCAGAAATTAAAAGGCC 59.371 40.000 0.00 0.00 0.00 5.19
7331 9029 2.099756 CCGGAAAGAGAAAATGCCATCC 59.900 50.000 0.00 0.00 0.00 3.51
7412 11773 3.820467 TGTCAGTGTTTAATCTGCCCTTG 59.180 43.478 0.00 0.00 0.00 3.61
7413 11774 3.191371 GTCAGTGTTTAATCTGCCCTTGG 59.809 47.826 0.00 0.00 0.00 3.61
7414 11775 2.493278 CAGTGTTTAATCTGCCCTTGGG 59.507 50.000 0.32 0.32 0.00 4.12
7415 11776 2.378547 AGTGTTTAATCTGCCCTTGGGA 59.621 45.455 10.36 0.00 0.00 4.37
7416 11777 3.161866 GTGTTTAATCTGCCCTTGGGAA 58.838 45.455 10.36 0.00 0.00 3.97
7417 11778 3.769300 GTGTTTAATCTGCCCTTGGGAAT 59.231 43.478 10.36 0.00 0.00 3.01
7418 11779 4.222810 GTGTTTAATCTGCCCTTGGGAATT 59.777 41.667 10.36 8.01 0.00 2.17
7419 11780 4.466015 TGTTTAATCTGCCCTTGGGAATTC 59.534 41.667 10.36 0.00 0.00 2.17
7420 11781 4.608170 TTAATCTGCCCTTGGGAATTCT 57.392 40.909 10.36 0.00 0.00 2.40
7421 11782 3.479866 AATCTGCCCTTGGGAATTCTT 57.520 42.857 10.36 0.00 0.00 2.52
7422 11783 4.608170 AATCTGCCCTTGGGAATTCTTA 57.392 40.909 10.36 0.00 0.00 2.10
7423 11784 4.608170 ATCTGCCCTTGGGAATTCTTAA 57.392 40.909 10.36 0.46 0.00 1.85
7424 11785 3.968265 TCTGCCCTTGGGAATTCTTAAG 58.032 45.455 10.36 9.76 0.00 1.85
7425 11786 3.026694 CTGCCCTTGGGAATTCTTAAGG 58.973 50.000 23.25 23.25 39.47 2.69
7426 11787 1.757118 GCCCTTGGGAATTCTTAAGGC 59.243 52.381 24.11 17.66 38.65 4.35
7427 11788 2.024414 CCCTTGGGAATTCTTAAGGCG 58.976 52.381 24.11 17.42 38.65 5.52
7428 11789 1.405463 CCTTGGGAATTCTTAAGGCGC 59.595 52.381 20.56 0.00 33.94 6.53
7429 11790 1.405463 CTTGGGAATTCTTAAGGCGCC 59.595 52.381 21.89 21.89 0.00 6.53
7430 11791 0.395173 TGGGAATTCTTAAGGCGCCC 60.395 55.000 26.15 5.07 34.67 6.13
7431 11792 0.106669 GGGAATTCTTAAGGCGCCCT 60.107 55.000 26.15 14.38 33.87 5.19
7432 11793 1.685180 GGGAATTCTTAAGGCGCCCTT 60.685 52.381 26.15 18.92 46.63 3.95
7471 11832 6.183360 GCAATCACTAGTGAAATCTCAGTGTC 60.183 42.308 28.43 7.02 43.58 3.67
7474 12638 7.946381 TCACTAGTGAAATCTCAGTGTCTAT 57.054 36.000 23.24 0.00 35.90 1.98
7565 12729 3.235200 ACAATCCGGGGTTTCATGAAAA 58.765 40.909 22.07 6.46 31.33 2.29
7613 12777 3.885358 TGTAGCTAGAATATGTGTCGCG 58.115 45.455 0.00 0.00 0.00 5.87
7649 12813 5.584253 TTTACATGACTAGAGGACTCAGC 57.416 43.478 0.00 0.00 0.00 4.26
7676 12840 2.025887 GGTGGAACTGTGGGAGATGATT 60.026 50.000 0.00 0.00 36.74 2.57
7714 12878 0.541764 ATTGGGTGGCGTGGTGAAAT 60.542 50.000 0.00 0.00 0.00 2.17
7720 12884 0.808125 TGGCGTGGTGAAATATGTGC 59.192 50.000 0.00 0.00 0.00 4.57
7725 12889 3.181497 GCGTGGTGAAATATGTGCATTCT 60.181 43.478 0.00 0.00 0.00 2.40
7728 12892 5.391843 CGTGGTGAAATATGTGCATTCTGAA 60.392 40.000 0.00 0.00 0.00 3.02
7748 12912 9.621239 TTCTGAAGAGGATATAAGATATGGGTT 57.379 33.333 0.00 0.00 0.00 4.11
7761 12925 6.170846 AGATATGGGTTTTAGGTACCTTCG 57.829 41.667 22.11 0.00 35.92 3.79
7795 12959 2.288395 GCTATGTTGGCAAAGCACTGTT 60.288 45.455 15.59 0.00 35.05 3.16
7797 12961 1.180907 TGTTGGCAAAGCACTGTTGA 58.819 45.000 0.00 0.00 0.00 3.18
7812 12976 6.712095 AGCACTGTTGATGACTAATTCAGAAA 59.288 34.615 0.00 0.00 37.77 2.52
7847 13011 1.369209 CACGTGTTCTTGGCGCAAG 60.369 57.895 10.83 11.43 42.25 4.01
7876 13040 8.885494 TTTTTCAGATGGTTACATTTTGAAGG 57.115 30.769 0.00 0.00 39.70 3.46
7886 13050 2.893489 ACATTTTGAAGGCCTCCACTTC 59.107 45.455 5.23 0.00 43.52 3.01
7895 13059 2.158900 AGGCCTCCACTTCGAATACATG 60.159 50.000 0.00 0.00 0.00 3.21
7898 13062 2.170607 CCTCCACTTCGAATACATGGGT 59.829 50.000 14.41 0.00 0.00 4.51
7935 13099 3.958147 GAGTCCAAACTTTTGAAAGGGGA 59.042 43.478 8.23 8.49 40.55 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.455008 TCCCTCTTGTCTTCTACAGTATTTTCT 59.545 37.037 0.00 0.00 39.87 2.52
1 2 7.612677 TCCCTCTTGTCTTCTACAGTATTTTC 58.387 38.462 0.00 0.00 39.87 2.29
2 3 7.455008 TCTCCCTCTTGTCTTCTACAGTATTTT 59.545 37.037 0.00 0.00 39.87 1.82
3 4 6.954684 TCTCCCTCTTGTCTTCTACAGTATTT 59.045 38.462 0.00 0.00 39.87 1.40
4 5 6.378848 GTCTCCCTCTTGTCTTCTACAGTATT 59.621 42.308 0.00 0.00 39.87 1.89
5 6 5.889289 GTCTCCCTCTTGTCTTCTACAGTAT 59.111 44.000 0.00 0.00 39.87 2.12
6 7 5.222068 TGTCTCCCTCTTGTCTTCTACAGTA 60.222 44.000 0.00 0.00 39.87 2.74
7 8 4.083565 GTCTCCCTCTTGTCTTCTACAGT 58.916 47.826 0.00 0.00 39.87 3.55
8 9 4.082845 TGTCTCCCTCTTGTCTTCTACAG 58.917 47.826 0.00 0.00 39.87 2.74
9 10 4.082845 CTGTCTCCCTCTTGTCTTCTACA 58.917 47.826 0.00 0.00 35.88 2.74
10 11 4.337145 TCTGTCTCCCTCTTGTCTTCTAC 58.663 47.826 0.00 0.00 0.00 2.59
11 12 4.659529 TCTGTCTCCCTCTTGTCTTCTA 57.340 45.455 0.00 0.00 0.00 2.10
12 13 3.534357 TCTGTCTCCCTCTTGTCTTCT 57.466 47.619 0.00 0.00 0.00 2.85
13 14 3.322254 TGTTCTGTCTCCCTCTTGTCTTC 59.678 47.826 0.00 0.00 0.00 2.87
14 15 3.070302 GTGTTCTGTCTCCCTCTTGTCTT 59.930 47.826 0.00 0.00 0.00 3.01
15 16 2.630580 GTGTTCTGTCTCCCTCTTGTCT 59.369 50.000 0.00 0.00 0.00 3.41
16 17 2.608261 CGTGTTCTGTCTCCCTCTTGTC 60.608 54.545 0.00 0.00 0.00 3.18
17 18 1.341531 CGTGTTCTGTCTCCCTCTTGT 59.658 52.381 0.00 0.00 0.00 3.16
18 19 1.613925 TCGTGTTCTGTCTCCCTCTTG 59.386 52.381 0.00 0.00 0.00 3.02
19 20 1.996798 TCGTGTTCTGTCTCCCTCTT 58.003 50.000 0.00 0.00 0.00 2.85
20 21 1.614413 GTTCGTGTTCTGTCTCCCTCT 59.386 52.381 0.00 0.00 0.00 3.69
21 22 1.614413 AGTTCGTGTTCTGTCTCCCTC 59.386 52.381 0.00 0.00 0.00 4.30
22 23 1.614413 GAGTTCGTGTTCTGTCTCCCT 59.386 52.381 0.00 0.00 0.00 4.20
23 24 1.614413 AGAGTTCGTGTTCTGTCTCCC 59.386 52.381 0.00 0.00 0.00 4.30
24 25 3.053455 CAAGAGTTCGTGTTCTGTCTCC 58.947 50.000 0.00 0.00 0.00 3.71
25 26 2.473235 GCAAGAGTTCGTGTTCTGTCTC 59.527 50.000 0.00 0.00 0.00 3.36
26 27 2.101582 AGCAAGAGTTCGTGTTCTGTCT 59.898 45.455 0.00 0.00 0.00 3.41
27 28 2.474816 AGCAAGAGTTCGTGTTCTGTC 58.525 47.619 0.00 0.00 0.00 3.51
28 29 2.604046 AGCAAGAGTTCGTGTTCTGT 57.396 45.000 0.00 0.00 0.00 3.41
29 30 3.060003 CAGAAGCAAGAGTTCGTGTTCTG 60.060 47.826 16.78 16.78 37.27 3.02
30 31 3.126831 CAGAAGCAAGAGTTCGTGTTCT 58.873 45.455 0.00 3.21 31.75 3.01
31 32 2.866762 ACAGAAGCAAGAGTTCGTGTTC 59.133 45.455 0.00 1.36 0.00 3.18
32 33 2.609459 CACAGAAGCAAGAGTTCGTGTT 59.391 45.455 0.00 0.00 0.00 3.32
33 34 2.205074 CACAGAAGCAAGAGTTCGTGT 58.795 47.619 0.00 0.00 0.00 4.49
34 35 1.070309 GCACAGAAGCAAGAGTTCGTG 60.070 52.381 0.00 0.00 34.46 4.35
35 36 1.202580 AGCACAGAAGCAAGAGTTCGT 60.203 47.619 0.00 0.00 36.85 3.85
36 37 1.506493 AGCACAGAAGCAAGAGTTCG 58.494 50.000 0.00 0.00 36.85 3.95
37 38 3.120854 CGTAAGCACAGAAGCAAGAGTTC 60.121 47.826 0.00 0.00 36.85 3.01
38 39 2.802816 CGTAAGCACAGAAGCAAGAGTT 59.197 45.455 0.00 0.00 36.85 3.01
39 40 2.408050 CGTAAGCACAGAAGCAAGAGT 58.592 47.619 0.00 0.00 36.85 3.24
95 97 0.893727 ACAACCGCCTCCATTTGGTC 60.894 55.000 0.00 0.00 32.37 4.02
175 177 7.487189 TCAGATCGATACGGTTTCTAAGAAAAC 59.513 37.037 0.00 0.00 38.21 2.43
198 200 7.993821 AATAGTCATAACACACGAGATTCAG 57.006 36.000 0.00 0.00 0.00 3.02
222 225 6.765989 AGCCACGATGCTACAAGAAAATATTA 59.234 34.615 1.67 0.00 40.56 0.98
234 237 1.002366 CTGTCAAGCCACGATGCTAC 58.998 55.000 4.00 1.38 41.80 3.58
235 238 0.894835 TCTGTCAAGCCACGATGCTA 59.105 50.000 4.00 0.00 41.80 3.49
276 279 3.004315 GGCTTCCACTCGATTGTCAAAAA 59.996 43.478 1.83 0.00 0.00 1.94
277 280 2.552315 GGCTTCCACTCGATTGTCAAAA 59.448 45.455 1.83 0.00 0.00 2.44
309 312 2.423185 CAGTCAGTGGCAGTGTCAAAAA 59.577 45.455 21.06 0.00 0.00 1.94
310 313 2.016318 CAGTCAGTGGCAGTGTCAAAA 58.984 47.619 21.06 0.00 0.00 2.44
311 314 1.667236 CAGTCAGTGGCAGTGTCAAA 58.333 50.000 21.06 0.00 0.00 2.69
312 315 0.815213 GCAGTCAGTGGCAGTGTCAA 60.815 55.000 21.06 0.00 0.00 3.18
313 316 1.227645 GCAGTCAGTGGCAGTGTCA 60.228 57.895 21.06 0.00 0.00 3.58
314 317 0.815213 TTGCAGTCAGTGGCAGTGTC 60.815 55.000 21.06 15.95 41.68 3.67
315 318 0.394216 TTTGCAGTCAGTGGCAGTGT 60.394 50.000 21.06 0.69 41.68 3.55
316 319 0.740149 TTTTGCAGTCAGTGGCAGTG 59.260 50.000 16.28 16.28 41.68 3.66
317 320 1.406539 CTTTTTGCAGTCAGTGGCAGT 59.593 47.619 0.00 0.00 41.68 4.40
318 321 1.269413 CCTTTTTGCAGTCAGTGGCAG 60.269 52.381 0.00 0.00 41.68 4.85
319 322 0.746063 CCTTTTTGCAGTCAGTGGCA 59.254 50.000 0.00 0.00 38.46 4.92
320 323 0.746659 ACCTTTTTGCAGTCAGTGGC 59.253 50.000 0.00 0.00 0.00 5.01
321 324 2.813061 CAACCTTTTTGCAGTCAGTGG 58.187 47.619 0.00 0.00 0.00 4.00
322 325 2.195922 GCAACCTTTTTGCAGTCAGTG 58.804 47.619 4.12 0.00 44.34 3.66
888 1696 2.017049 GTGTGACTTTGACTTGGCACT 58.983 47.619 0.00 0.00 0.00 4.40
916 1724 0.664761 CACCTGAGTGGCTTGTGTTG 59.335 55.000 0.00 0.00 40.55 3.33
917 1725 0.546122 TCACCTGAGTGGCTTGTGTT 59.454 50.000 0.00 0.00 44.64 3.32
918 1726 0.107456 CTCACCTGAGTGGCTTGTGT 59.893 55.000 0.00 0.00 44.64 3.72
919 1727 0.394192 TCTCACCTGAGTGGCTTGTG 59.606 55.000 2.25 0.00 44.64 3.33
920 1728 1.131638 TTCTCACCTGAGTGGCTTGT 58.868 50.000 2.25 0.00 44.64 3.16
921 1729 2.149578 CTTTCTCACCTGAGTGGCTTG 58.850 52.381 2.25 0.00 44.64 4.01
922 1730 2.038295 CTCTTTCTCACCTGAGTGGCTT 59.962 50.000 2.25 0.00 44.64 4.35
923 1731 1.622811 CTCTTTCTCACCTGAGTGGCT 59.377 52.381 2.25 0.00 44.64 4.75
924 1732 1.620819 TCTCTTTCTCACCTGAGTGGC 59.379 52.381 2.25 0.00 44.64 5.01
934 1742 5.721480 TCTCTCTCTCTCTCTCTCTTTCTCA 59.279 44.000 0.00 0.00 0.00 3.27
939 1747 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
945 1753 3.181450 CCCCTTCTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
946 1754 2.780010 CCCCTTCTCTCTCTCTCTCTCT 59.220 54.545 0.00 0.00 0.00 3.10
947 1755 2.158608 CCCCCTTCTCTCTCTCTCTCTC 60.159 59.091 0.00 0.00 0.00 3.20
948 1756 1.852965 CCCCCTTCTCTCTCTCTCTCT 59.147 57.143 0.00 0.00 0.00 3.10
949 1757 1.754201 GCCCCCTTCTCTCTCTCTCTC 60.754 61.905 0.00 0.00 0.00 3.20
950 1758 0.261696 GCCCCCTTCTCTCTCTCTCT 59.738 60.000 0.00 0.00 0.00 3.10
951 1759 1.106944 CGCCCCCTTCTCTCTCTCTC 61.107 65.000 0.00 0.00 0.00 3.20
952 1760 1.076339 CGCCCCCTTCTCTCTCTCT 60.076 63.158 0.00 0.00 0.00 3.10
953 1761 2.131067 CCGCCCCCTTCTCTCTCTC 61.131 68.421 0.00 0.00 0.00 3.20
1221 2030 2.964464 GAGGAGAAGAGAGATGGCATGA 59.036 50.000 3.81 0.00 0.00 3.07
1222 2031 2.037511 GGAGGAGAAGAGAGATGGCATG 59.962 54.545 3.81 0.00 0.00 4.06
1334 2160 1.544691 AGTTGATAGGACACGAGCGTT 59.455 47.619 0.00 0.00 0.00 4.84
1356 2182 3.086282 TCGTAGGAGCTGATGTGTTGTA 58.914 45.455 0.00 0.00 0.00 2.41
1357 2183 1.893137 TCGTAGGAGCTGATGTGTTGT 59.107 47.619 0.00 0.00 0.00 3.32
1358 2184 2.654749 TCGTAGGAGCTGATGTGTTG 57.345 50.000 0.00 0.00 0.00 3.33
1359 2185 2.563179 AGTTCGTAGGAGCTGATGTGTT 59.437 45.455 0.62 0.00 31.94 3.32
1369 2195 6.618811 ACACACTTATACAAGTTCGTAGGAG 58.381 40.000 0.00 0.00 42.51 3.69
1398 2235 4.360951 ACCAAAATAACTTCGGGTCTCA 57.639 40.909 0.00 0.00 0.00 3.27
1418 2255 5.215160 GTCACAGGATCATTGTTTGACAAC 58.785 41.667 11.84 0.00 41.40 3.32
1470 2307 2.678336 GAGTACTAAGCAACCACATGGC 59.322 50.000 0.00 0.00 39.32 4.40
1486 2323 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
1487 2324 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1488 2325 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
1489 2326 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1490 2327 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1491 2328 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1492 2329 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1520 2357 9.733219 AGCGTTTAGATAACTAAAGTAGTGATC 57.267 33.333 5.51 5.03 45.42 2.92
1521 2358 9.733219 GAGCGTTTAGATAACTAAAGTAGTGAT 57.267 33.333 5.51 0.00 45.42 3.06
1522 2359 8.954350 AGAGCGTTTAGATAACTAAAGTAGTGA 58.046 33.333 5.51 0.00 45.42 3.41
1523 2360 9.570488 AAGAGCGTTTAGATAACTAAAGTAGTG 57.430 33.333 5.51 0.00 45.42 2.74
1540 2377 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1541 2378 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1542 2379 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1543 2380 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1544 2381 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1551 2388 9.064706 CGATCTTACTCCCTCTGTAAACTAATA 57.935 37.037 0.00 0.00 30.72 0.98
1552 2389 7.778853 TCGATCTTACTCCCTCTGTAAACTAAT 59.221 37.037 0.00 0.00 30.72 1.73
1553 2390 7.114754 TCGATCTTACTCCCTCTGTAAACTAA 58.885 38.462 0.00 0.00 30.72 2.24
1554 2391 6.656902 TCGATCTTACTCCCTCTGTAAACTA 58.343 40.000 0.00 0.00 30.72 2.24
1555 2392 5.507637 TCGATCTTACTCCCTCTGTAAACT 58.492 41.667 0.00 0.00 30.72 2.66
1556 2393 5.831702 TCGATCTTACTCCCTCTGTAAAC 57.168 43.478 0.00 0.00 30.72 2.01
1557 2394 6.127101 TGATCGATCTTACTCCCTCTGTAAA 58.873 40.000 25.02 0.00 30.72 2.01
1558 2395 5.691896 TGATCGATCTTACTCCCTCTGTAA 58.308 41.667 25.02 0.00 0.00 2.41
1559 2396 5.306114 TGATCGATCTTACTCCCTCTGTA 57.694 43.478 25.02 0.00 0.00 2.74
1560 2397 4.171878 TGATCGATCTTACTCCCTCTGT 57.828 45.455 25.02 0.00 0.00 3.41
1561 2398 5.521906 TTTGATCGATCTTACTCCCTCTG 57.478 43.478 25.02 0.00 0.00 3.35
1562 2399 5.600484 ACATTTGATCGATCTTACTCCCTCT 59.400 40.000 25.02 0.00 0.00 3.69
1563 2400 5.848406 ACATTTGATCGATCTTACTCCCTC 58.152 41.667 25.02 0.00 0.00 4.30
1564 2401 5.878406 ACATTTGATCGATCTTACTCCCT 57.122 39.130 25.02 0.37 0.00 4.20
1565 2402 5.277538 GCAACATTTGATCGATCTTACTCCC 60.278 44.000 25.02 5.35 0.00 4.30
1566 2403 5.294306 TGCAACATTTGATCGATCTTACTCC 59.706 40.000 25.02 8.35 0.00 3.85
1567 2404 6.256539 TCTGCAACATTTGATCGATCTTACTC 59.743 38.462 25.02 0.39 0.00 2.59
1568 2405 6.108687 TCTGCAACATTTGATCGATCTTACT 58.891 36.000 25.02 6.12 0.00 2.24
1585 2422 7.328249 TCGAATATTTGGTGAAAATTCTGCAAC 59.672 33.333 2.78 0.00 39.29 4.17
1637 2474 2.070262 TCATGTGCTCACGAGTGAAG 57.930 50.000 7.38 3.44 39.39 3.02
1681 2518 1.068588 TGCAGATATGGTACGGCACTC 59.931 52.381 0.00 0.00 33.05 3.51
1686 2523 7.899178 TTATTTGTATGCAGATATGGTACGG 57.101 36.000 0.00 0.00 0.00 4.02
1730 2567 3.252215 TCCTTACACTTGTGCGAAATTGG 59.748 43.478 0.10 0.00 0.00 3.16
1734 2571 2.158871 AGGTCCTTACACTTGTGCGAAA 60.159 45.455 0.10 0.00 0.00 3.46
1756 2593 6.854496 TTTCGAATAAAATGCGGTATAGCT 57.146 33.333 0.00 0.00 38.13 3.32
1787 2624 8.428852 TGAATGATCGAATGGGAAGTTTCTATA 58.571 33.333 0.00 0.00 0.00 1.31
1806 2644 4.184079 GCTCAAGGCAAGTTTGAATGAT 57.816 40.909 0.00 0.00 41.35 2.45
1933 2771 6.595326 TGGTCAATCTGATTAAGCAACTACAG 59.405 38.462 3.01 0.00 0.00 2.74
2007 2845 4.389382 TGCGCTCAAAATTGAAATCAATGG 59.611 37.500 9.73 3.58 45.06 3.16
2124 2962 4.105377 AGAATGCATATAGCCAGGTCCTTT 59.895 41.667 0.00 0.00 44.83 3.11
2140 2979 3.973206 TTTTCCTCCGAGTAGAATGCA 57.027 42.857 0.00 0.00 0.00 3.96
2182 3021 3.564225 ACAGGTTCGAACTTTGAATGGTC 59.436 43.478 27.86 11.43 0.00 4.02
2197 3036 2.450609 TTACCGCTCAAGACAGGTTC 57.549 50.000 0.00 0.00 38.12 3.62
2201 3040 2.132762 ACGTTTTACCGCTCAAGACAG 58.867 47.619 0.00 0.00 0.00 3.51
2257 3096 6.663944 ATTTGAAGGTAGCGTAAGTGAATC 57.336 37.500 0.00 0.00 41.68 2.52
2288 3127 9.255304 TGGAAAGTTTCTATGTTATGTTTTTGC 57.745 29.630 15.05 0.00 0.00 3.68
2410 3250 8.086522 ACCACAAATAGCTACGTATATAACCTG 58.913 37.037 0.00 0.00 0.00 4.00
2455 3295 8.737168 TCATATCTGTTACAAGAAATCCAAGG 57.263 34.615 0.00 0.00 0.00 3.61
2457 3297 7.283127 GCCTCATATCTGTTACAAGAAATCCAA 59.717 37.037 0.00 0.00 0.00 3.53
2500 3340 7.231467 ACATTCACCCACCCATCTATTAATAC 58.769 38.462 0.00 0.00 0.00 1.89
2529 3369 4.039852 GGAGAAGTTGAGGACTGAAGAAGT 59.960 45.833 0.00 0.00 43.85 3.01
2552 3392 8.790718 AGCTTTTAACATGCATTCCTATCATAG 58.209 33.333 0.00 0.00 0.00 2.23
2657 3497 5.692115 TTGAGAAGTATGCCACTCCATAA 57.308 39.130 0.00 0.00 36.04 1.90
2658 3498 5.189736 ACTTTGAGAAGTATGCCACTCCATA 59.810 40.000 0.00 0.00 44.13 2.74
2765 3605 5.236478 TCAGTTCGAACTTTTGGATGAACTC 59.764 40.000 27.79 0.00 42.84 3.01
2781 3621 1.550524 CACCCTTCTCCATCAGTTCGA 59.449 52.381 0.00 0.00 0.00 3.71
2950 3794 5.886960 AAAGTGTTAGCTTCTGGCATAAG 57.113 39.130 8.17 8.17 44.79 1.73
2952 3796 4.700213 GGAAAAGTGTTAGCTTCTGGCATA 59.300 41.667 0.00 0.00 44.79 3.14
3077 3921 8.747538 ATCATAAGTACAATACAGAAAACCCC 57.252 34.615 0.00 0.00 0.00 4.95
3115 3959 0.689745 TAGTGAGGGGACGGATTGGG 60.690 60.000 0.00 0.00 0.00 4.12
3123 3967 8.753497 AAAAGATATTTTGATAGTGAGGGGAC 57.247 34.615 0.00 0.00 0.00 4.46
3149 3993 2.927856 TTCTGGCCTCTTGCGGGA 60.928 61.111 3.32 0.00 42.61 5.14
3481 4405 6.235664 TGGGAGTAACAGGTTGTAAATCTTC 58.764 40.000 0.00 0.00 32.67 2.87
3496 4420 7.296628 AGATGAATAGAGTGATGGGAGTAAC 57.703 40.000 0.00 0.00 0.00 2.50
3848 4772 1.527311 GACGAGTGCTCCAACAGAAAC 59.473 52.381 0.00 0.00 0.00 2.78
4040 4964 5.106515 GCCAGTTTCCAAGAACTTCTCATAC 60.107 44.000 0.00 0.00 37.76 2.39
4229 5153 2.583143 GGCAAAGTCCACAGGTAAACT 58.417 47.619 0.00 0.00 0.00 2.66
4349 5273 6.533367 CAGTAAGAAGGTCTCTAATGAAGCAC 59.467 42.308 0.00 0.00 32.46 4.40
4403 5327 9.796120 TTCGTGAGTAACTTTTTGAAATGAATT 57.204 25.926 0.00 0.00 0.00 2.17
4405 5329 9.796120 ATTTCGTGAGTAACTTTTTGAAATGAA 57.204 25.926 0.00 0.00 34.54 2.57
4416 5340 9.378551 TGAAGCATTATATTTCGTGAGTAACTT 57.621 29.630 0.00 0.00 0.00 2.66
4419 5372 7.306574 CGCTGAAGCATTATATTTCGTGAGTAA 60.307 37.037 2.79 0.00 42.21 2.24
4637 5673 9.453572 TGAATCAAGCTAGTTATCATTTGTCTT 57.546 29.630 0.00 0.00 0.00 3.01
4646 5682 9.190858 CTGATACAGTGAATCAAGCTAGTTATC 57.809 37.037 0.00 0.00 33.13 1.75
4728 5764 8.208718 TCTACTATTTTGCATATGTTGGTGTC 57.791 34.615 4.29 0.00 0.00 3.67
4736 5772 8.438513 CAGGATCGTTCTACTATTTTGCATATG 58.561 37.037 0.00 0.00 0.00 1.78
4749 5785 2.159085 CCAGAACCCAGGATCGTTCTAC 60.159 54.545 11.79 0.00 45.33 2.59
4840 5876 4.081917 TCAACTTGATACCTATGTGCGTCA 60.082 41.667 0.00 0.00 0.00 4.35
4841 5877 4.430007 TCAACTTGATACCTATGTGCGTC 58.570 43.478 0.00 0.00 0.00 5.19
4898 5935 5.573146 GTTTTCATACAGGTAGCTGATTGC 58.427 41.667 27.87 8.24 43.29 3.56
5105 6146 5.183140 CGGAATCCACTTCATAAAACTTGGT 59.817 40.000 0.00 0.00 35.41 3.67
5191 6233 3.423154 CTTGGTTCCGTGCGAGGC 61.423 66.667 0.00 0.00 0.00 4.70
5201 6243 3.975168 TCTACTACTTGGGCTTGGTTC 57.025 47.619 0.00 0.00 0.00 3.62
5232 6274 5.483811 TCATCTTAAAATGCAGACCACGTA 58.516 37.500 0.00 0.00 0.00 3.57
5324 6369 2.027745 GTGAACCTCCATCAGAAGCTGA 60.028 50.000 0.00 0.00 44.99 4.26
5404 6492 7.456902 GGGTGGAGGGAGTATATGTTATCTTAA 59.543 40.741 0.00 0.00 0.00 1.85
5426 6514 5.080969 TCTAAGTCAACTAATTCCGGGTG 57.919 43.478 0.00 0.00 0.00 4.61
5427 6515 5.952347 ATCTAAGTCAACTAATTCCGGGT 57.048 39.130 0.00 0.00 0.00 5.28
5428 6516 6.598064 ACAAATCTAAGTCAACTAATTCCGGG 59.402 38.462 0.00 0.00 0.00 5.73
5461 6557 5.046304 ACCTCCATCCTGAATTATACATCCG 60.046 44.000 0.00 0.00 0.00 4.18
5470 6566 7.451731 TCTAATACAACCTCCATCCTGAATT 57.548 36.000 0.00 0.00 0.00 2.17
5471 6567 7.639062 ATCTAATACAACCTCCATCCTGAAT 57.361 36.000 0.00 0.00 0.00 2.57
5472 6568 7.235606 CCTATCTAATACAACCTCCATCCTGAA 59.764 40.741 0.00 0.00 0.00 3.02
5473 6569 6.726299 CCTATCTAATACAACCTCCATCCTGA 59.274 42.308 0.00 0.00 0.00 3.86
5477 6573 7.963532 TCAACCTATCTAATACAACCTCCATC 58.036 38.462 0.00 0.00 0.00 3.51
5479 6575 7.743116 TTCAACCTATCTAATACAACCTCCA 57.257 36.000 0.00 0.00 0.00 3.86
5521 6702 5.801531 AATCATATGGCATGAACAGCAAT 57.198 34.783 10.98 0.00 0.00 3.56
5530 6714 3.764972 TGGGTGCATAATCATATGGCATG 59.235 43.478 10.98 5.47 39.49 4.06
5534 6718 5.072055 TGAACTGGGTGCATAATCATATGG 58.928 41.667 2.13 0.00 39.49 2.74
5538 6722 4.202182 GCAATGAACTGGGTGCATAATCAT 60.202 41.667 0.00 0.00 29.16 2.45
5557 6741 2.223711 GGTGAAACGTCAAGTTGGCAAT 60.224 45.455 8.43 0.00 43.37 3.56
5574 6758 6.874664 TGCAGTAAAACTAATCGTTATGGTGA 59.125 34.615 0.00 0.00 33.90 4.02
5575 6759 6.959311 GTGCAGTAAAACTAATCGTTATGGTG 59.041 38.462 0.00 0.00 33.90 4.17
5582 6766 5.662211 AAACGTGCAGTAAAACTAATCGT 57.338 34.783 0.00 0.00 31.87 3.73
5602 6803 6.403049 TCTGGATCACAAATCGTAAGCTAAA 58.597 36.000 0.00 0.00 37.18 1.85
5611 6812 4.375272 ACTAGCATCTGGATCACAAATCG 58.625 43.478 0.00 0.00 0.00 3.34
5619 6820 6.578023 AGTTCTTGTTACTAGCATCTGGATC 58.422 40.000 0.00 0.00 0.00 3.36
5625 6826 6.487689 AAGCAAGTTCTTGTTACTAGCATC 57.512 37.500 13.04 0.00 0.00 3.91
5652 6853 6.861572 GCCAAACTTGTTTTAGGTAGTTCATC 59.138 38.462 0.00 0.00 30.92 2.92
5660 6861 5.010617 CCAGTATGCCAAACTTGTTTTAGGT 59.989 40.000 0.00 0.00 31.97 3.08
5662 6863 6.325919 TCCAGTATGCCAAACTTGTTTTAG 57.674 37.500 0.00 0.00 31.97 1.85
5664 6865 5.806654 ATCCAGTATGCCAAACTTGTTTT 57.193 34.783 0.00 0.00 31.97 2.43
5674 6875 4.586421 TCAAAACAACAATCCAGTATGCCA 59.414 37.500 0.00 0.00 31.97 4.92
5683 6884 7.378181 ACATCCTTGTATCAAAACAACAATCC 58.622 34.615 0.00 0.00 35.56 3.01
5758 6960 4.202441 ACTGAGCAGCAAAAAGAAGAAGA 58.798 39.130 0.00 0.00 0.00 2.87
5765 6967 4.937620 TGTATCCTACTGAGCAGCAAAAAG 59.062 41.667 0.00 0.00 0.00 2.27
5766 6968 4.695455 GTGTATCCTACTGAGCAGCAAAAA 59.305 41.667 0.00 0.00 0.00 1.94
5767 6969 4.253685 GTGTATCCTACTGAGCAGCAAAA 58.746 43.478 0.00 0.00 0.00 2.44
5790 6992 1.710013 CGTATGAACGTTGTGGCTCT 58.290 50.000 5.00 0.00 44.21 4.09
5817 7019 5.432885 TTTCCCGTCTGTTTCTCATTTTC 57.567 39.130 0.00 0.00 0.00 2.29
5954 7156 7.446319 ACTGAACACAAGAATGAATGATTCAGA 59.554 33.333 13.79 0.00 43.98 3.27
6004 7206 7.313740 AGAGAACCATATATGCTTGTGAGAT 57.686 36.000 7.24 0.00 0.00 2.75
6404 7606 1.453155 CCATGGACTTTGGGTCGAAG 58.547 55.000 5.56 0.00 45.35 3.79
6405 7607 0.608035 GCCATGGACTTTGGGTCGAA 60.608 55.000 18.40 0.00 45.35 3.71
6413 7615 1.675641 GACTGGCGCCATGGACTTT 60.676 57.895 32.87 8.17 0.00 2.66
6452 7654 1.539929 CCTCGCATGACAATCTCTCCC 60.540 57.143 0.00 0.00 0.00 4.30
6497 7699 1.805428 CGTTGGCCTTGGGGTTCTTG 61.805 60.000 3.32 0.00 34.45 3.02
6899 8101 0.908198 CCTTGGCCTTAGCTCTCAGT 59.092 55.000 3.32 0.00 39.73 3.41
7311 9009 2.099756 GGGATGGCATTTTCTCTTTCCG 59.900 50.000 0.00 0.00 0.00 4.30
7331 9029 5.948742 ACAAGATCTTCCTTCCTTCTAGG 57.051 43.478 4.57 0.00 36.46 3.02
7412 11773 0.106669 AGGGCGCCTTAAGAATTCCC 60.107 55.000 28.56 4.37 0.00 3.97
7413 11774 1.405463 CAAGGGCGCCTTAAGAATTCC 59.595 52.381 28.56 4.97 42.67 3.01
7414 11775 1.405463 CCAAGGGCGCCTTAAGAATTC 59.595 52.381 28.56 5.83 42.67 2.17
7415 11776 1.474330 CCAAGGGCGCCTTAAGAATT 58.526 50.000 28.56 0.00 42.67 2.17
7416 11777 0.395724 CCCAAGGGCGCCTTAAGAAT 60.396 55.000 28.56 0.00 42.67 2.40
7417 11778 1.001393 CCCAAGGGCGCCTTAAGAA 60.001 57.895 28.56 0.00 42.67 2.52
7418 11779 1.493854 TTCCCAAGGGCGCCTTAAGA 61.494 55.000 28.56 13.65 42.67 2.10
7419 11780 0.395724 ATTCCCAAGGGCGCCTTAAG 60.396 55.000 28.56 15.17 42.67 1.85
7420 11781 0.040499 AATTCCCAAGGGCGCCTTAA 59.960 50.000 28.56 10.51 42.67 1.85
7421 11782 0.682855 CAATTCCCAAGGGCGCCTTA 60.683 55.000 28.56 2.70 42.67 2.69
7422 11783 1.984026 CAATTCCCAAGGGCGCCTT 60.984 57.895 28.56 18.19 45.88 4.35
7423 11784 2.362889 CAATTCCCAAGGGCGCCT 60.363 61.111 28.56 9.77 33.87 5.52
7424 11785 2.847366 TACCAATTCCCAAGGGCGCC 62.847 60.000 21.18 21.18 34.68 6.53
7425 11786 0.968393 TTACCAATTCCCAAGGGCGC 60.968 55.000 0.00 0.00 34.68 6.53
7426 11787 1.102978 CTTACCAATTCCCAAGGGCG 58.897 55.000 0.00 0.00 34.68 6.13
7427 11788 1.485124 CCTTACCAATTCCCAAGGGC 58.515 55.000 0.00 0.00 35.01 5.19
7428 11789 1.272985 TGCCTTACCAATTCCCAAGGG 60.273 52.381 0.00 0.00 38.39 3.95
7429 11790 2.230130 TGCCTTACCAATTCCCAAGG 57.770 50.000 4.71 4.71 40.48 3.61
7430 11791 3.768757 TGATTGCCTTACCAATTCCCAAG 59.231 43.478 0.00 0.00 35.67 3.61
7431 11792 3.513515 GTGATTGCCTTACCAATTCCCAA 59.486 43.478 0.00 0.00 35.67 4.12
7432 11793 3.096092 GTGATTGCCTTACCAATTCCCA 58.904 45.455 0.00 0.00 35.67 4.37
7512 12676 6.825610 AGGCACTCTCTCTTAATTATCCTTG 58.174 40.000 0.00 0.00 0.00 3.61
7551 12715 6.350194 GGTGACTCTATTTTTCATGAAACCCC 60.350 42.308 20.35 3.92 0.00 4.95
7557 12721 5.414789 TCCGGTGACTCTATTTTTCATGA 57.585 39.130 0.00 0.00 0.00 3.07
7565 12729 2.830651 AGTCCTCCGGTGACTCTATT 57.169 50.000 19.34 2.69 38.71 1.73
7586 12750 7.589395 CGACACATATTCTAGCTACATCTTCT 58.411 38.462 0.00 0.00 0.00 2.85
7593 12757 3.907194 GTCGCGACACATATTCTAGCTAC 59.093 47.826 33.09 0.12 0.00 3.58
7658 12822 6.122277 TCAAATAATCATCTCCCACAGTTCC 58.878 40.000 0.00 0.00 0.00 3.62
7662 12826 7.870509 TTCTTCAAATAATCATCTCCCACAG 57.129 36.000 0.00 0.00 0.00 3.66
7694 12858 0.110678 TTTCACCACGCCACCCAATA 59.889 50.000 0.00 0.00 0.00 1.90
7700 12864 1.467374 GCACATATTTCACCACGCCAC 60.467 52.381 0.00 0.00 0.00 5.01
7714 12878 9.093458 TCTTATATCCTCTTCAGAATGCACATA 57.907 33.333 0.00 0.00 34.76 2.29
7728 12892 9.860393 ACCTAAAACCCATATCTTATATCCTCT 57.140 33.333 0.00 0.00 0.00 3.69
7748 12912 8.508875 CAAAATTAAAGCTCGAAGGTACCTAAA 58.491 33.333 16.67 2.60 0.00 1.85
7761 12925 5.868801 TGCCAACATAGCAAAATTAAAGCTC 59.131 36.000 2.88 0.00 39.68 4.09
7812 12976 8.038944 AGAACACGTGTACATAAATATTCTGGT 58.961 33.333 23.69 0.00 0.00 4.00
7856 13020 4.463891 AGGCCTTCAAAATGTAACCATCTG 59.536 41.667 0.00 0.00 0.00 2.90
7876 13040 2.213499 CCATGTATTCGAAGTGGAGGC 58.787 52.381 13.40 0.00 31.59 4.70
7886 13050 5.584649 ACAAATGTACTCACCCATGTATTCG 59.415 40.000 0.00 0.00 0.00 3.34
7895 13059 4.382793 GGACTCCTACAAATGTACTCACCC 60.383 50.000 0.00 0.00 0.00 4.61
7898 13062 6.042781 AGTTTGGACTCCTACAAATGTACTCA 59.957 38.462 0.00 0.00 38.65 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.