Multiple sequence alignment - TraesCS4B01G185300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G185300 chr4B 100.000 2282 0 0 1 2282 404765471 404767752 0.000000e+00 4215.0
1 TraesCS4B01G185300 chr4B 90.876 548 19 16 1 521 517966657 517967200 0.000000e+00 706.0
2 TraesCS4B01G185300 chr4A 87.474 950 57 33 574 1508 147324265 147323363 0.000000e+00 1038.0
3 TraesCS4B01G185300 chr4D 87.343 956 55 26 583 1508 324219059 324219978 0.000000e+00 1035.0
4 TraesCS4B01G185300 chr4D 97.872 47 1 0 1708 1754 324222214 324222260 5.220000e-12 82.4
5 TraesCS4B01G185300 chr5A 99.435 531 3 0 1752 2282 706702720 706703250 0.000000e+00 965.0
6 TraesCS4B01G185300 chr5A 97.740 531 12 0 1752 2282 606897504 606896974 0.000000e+00 915.0
7 TraesCS4B01G185300 chr6B 99.058 531 5 0 1752 2282 337862751 337862221 0.000000e+00 953.0
8 TraesCS4B01G185300 chr6B 98.682 531 7 0 1752 2282 315287209 315287739 0.000000e+00 942.0
9 TraesCS4B01G185300 chr6B 97.740 531 12 0 1752 2282 696190977 696191507 0.000000e+00 915.0
10 TraesCS4B01G185300 chr6B 95.669 531 23 0 1752 2282 129480522 129479992 0.000000e+00 854.0
11 TraesCS4B01G185300 chr6B 91.209 546 24 2 1 522 638931630 638932175 0.000000e+00 721.0
12 TraesCS4B01G185300 chr5B 97.552 531 13 0 1752 2282 176623069 176623599 0.000000e+00 909.0
13 TraesCS4B01G185300 chr1B 97.363 531 14 0 1752 2282 660662326 660661796 0.000000e+00 904.0
14 TraesCS4B01G185300 chr3A 95.104 531 26 0 1752 2282 128070814 128070284 0.000000e+00 837.0
15 TraesCS4B01G185300 chr5D 94.925 532 18 4 1 525 417614952 417614423 0.000000e+00 824.0
16 TraesCS4B01G185300 chr5D 94.687 527 20 6 1 522 8183578 8184101 0.000000e+00 811.0
17 TraesCS4B01G185300 chr2B 93.554 543 16 9 1 526 644514210 644514750 0.000000e+00 791.0
18 TraesCS4B01G185300 chr1A 92.439 529 29 9 1 522 143321051 143320527 0.000000e+00 745.0
19 TraesCS4B01G185300 chr3D 89.642 531 44 5 1 522 584476157 584475629 0.000000e+00 665.0
20 TraesCS4B01G185300 chr1D 88.593 526 49 10 1 522 18608331 18608849 1.490000e-176 628.0
21 TraesCS4B01G185300 chr6D 87.905 463 42 11 65 525 51337933 51338383 1.200000e-147 532.0
22 TraesCS4B01G185300 chr6D 87.553 474 42 9 65 525 51338573 51339042 1.200000e-147 532.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G185300 chr4B 404765471 404767752 2281 False 4215.0 4215 100.0000 1 2282 1 chr4B.!!$F1 2281
1 TraesCS4B01G185300 chr4B 517966657 517967200 543 False 706.0 706 90.8760 1 521 1 chr4B.!!$F2 520
2 TraesCS4B01G185300 chr4A 147323363 147324265 902 True 1038.0 1038 87.4740 574 1508 1 chr4A.!!$R1 934
3 TraesCS4B01G185300 chr4D 324219059 324222260 3201 False 558.7 1035 92.6075 583 1754 2 chr4D.!!$F1 1171
4 TraesCS4B01G185300 chr5A 706702720 706703250 530 False 965.0 965 99.4350 1752 2282 1 chr5A.!!$F1 530
5 TraesCS4B01G185300 chr5A 606896974 606897504 530 True 915.0 915 97.7400 1752 2282 1 chr5A.!!$R1 530
6 TraesCS4B01G185300 chr6B 337862221 337862751 530 True 953.0 953 99.0580 1752 2282 1 chr6B.!!$R2 530
7 TraesCS4B01G185300 chr6B 315287209 315287739 530 False 942.0 942 98.6820 1752 2282 1 chr6B.!!$F1 530
8 TraesCS4B01G185300 chr6B 696190977 696191507 530 False 915.0 915 97.7400 1752 2282 1 chr6B.!!$F3 530
9 TraesCS4B01G185300 chr6B 129479992 129480522 530 True 854.0 854 95.6690 1752 2282 1 chr6B.!!$R1 530
10 TraesCS4B01G185300 chr6B 638931630 638932175 545 False 721.0 721 91.2090 1 522 1 chr6B.!!$F2 521
11 TraesCS4B01G185300 chr5B 176623069 176623599 530 False 909.0 909 97.5520 1752 2282 1 chr5B.!!$F1 530
12 TraesCS4B01G185300 chr1B 660661796 660662326 530 True 904.0 904 97.3630 1752 2282 1 chr1B.!!$R1 530
13 TraesCS4B01G185300 chr3A 128070284 128070814 530 True 837.0 837 95.1040 1752 2282 1 chr3A.!!$R1 530
14 TraesCS4B01G185300 chr5D 417614423 417614952 529 True 824.0 824 94.9250 1 525 1 chr5D.!!$R1 524
15 TraesCS4B01G185300 chr5D 8183578 8184101 523 False 811.0 811 94.6870 1 522 1 chr5D.!!$F1 521
16 TraesCS4B01G185300 chr2B 644514210 644514750 540 False 791.0 791 93.5540 1 526 1 chr2B.!!$F1 525
17 TraesCS4B01G185300 chr1A 143320527 143321051 524 True 745.0 745 92.4390 1 522 1 chr1A.!!$R1 521
18 TraesCS4B01G185300 chr3D 584475629 584476157 528 True 665.0 665 89.6420 1 522 1 chr3D.!!$R1 521
19 TraesCS4B01G185300 chr1D 18608331 18608849 518 False 628.0 628 88.5930 1 522 1 chr1D.!!$F1 521
20 TraesCS4B01G185300 chr6D 51337933 51339042 1109 False 532.0 532 87.7290 65 525 2 chr6D.!!$F1 460

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 1230 0.037605 AAGGAACCACGTCGATCACC 60.038 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 2178 0.319405 AATTTCACAGGCAGCCAAGC 59.681 50.0 15.8 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 817 2.264480 CGACGGATGCTGGAACCA 59.736 61.111 0.00 0.00 0.00 3.67
362 1041 4.680237 CGGCGGCCAGAGTCAACA 62.680 66.667 20.71 0.00 0.00 3.33
379 1058 4.529219 AATGCGCGGCGGATGAGA 62.529 61.111 29.32 0.00 38.06 3.27
525 1204 4.551729 GCCTGTTAGCGCCCATAA 57.448 55.556 2.29 0.00 0.00 1.90
526 1205 2.022520 GCCTGTTAGCGCCCATAAC 58.977 57.895 2.29 7.48 34.40 1.89
527 1206 0.463833 GCCTGTTAGCGCCCATAACT 60.464 55.000 16.16 0.00 34.80 2.24
528 1207 2.017113 GCCTGTTAGCGCCCATAACTT 61.017 52.381 16.16 0.00 34.80 2.66
529 1208 2.365582 CCTGTTAGCGCCCATAACTTT 58.634 47.619 16.16 0.00 34.80 2.66
530 1209 3.537580 CCTGTTAGCGCCCATAACTTTA 58.462 45.455 16.16 0.00 34.80 1.85
531 1210 3.311596 CCTGTTAGCGCCCATAACTTTAC 59.688 47.826 16.16 0.00 34.80 2.01
532 1211 3.936453 CTGTTAGCGCCCATAACTTTACA 59.064 43.478 16.16 1.21 34.80 2.41
533 1212 4.325119 TGTTAGCGCCCATAACTTTACAA 58.675 39.130 16.16 0.00 34.80 2.41
534 1213 4.393680 TGTTAGCGCCCATAACTTTACAAG 59.606 41.667 16.16 0.00 34.80 3.16
535 1214 2.365582 AGCGCCCATAACTTTACAAGG 58.634 47.619 2.29 0.00 0.00 3.61
536 1215 2.026636 AGCGCCCATAACTTTACAAGGA 60.027 45.455 2.29 0.00 0.00 3.36
537 1216 2.750712 GCGCCCATAACTTTACAAGGAA 59.249 45.455 0.00 0.00 0.00 3.36
538 1217 3.427098 GCGCCCATAACTTTACAAGGAAC 60.427 47.826 0.00 0.00 0.00 3.62
539 1218 3.128068 CGCCCATAACTTTACAAGGAACC 59.872 47.826 0.00 0.00 0.00 3.62
540 1219 4.083565 GCCCATAACTTTACAAGGAACCA 58.916 43.478 0.00 0.00 0.00 3.67
541 1220 4.082408 GCCCATAACTTTACAAGGAACCAC 60.082 45.833 0.00 0.00 0.00 4.16
542 1221 4.155280 CCCATAACTTTACAAGGAACCACG 59.845 45.833 0.00 0.00 0.00 4.94
543 1222 4.758165 CCATAACTTTACAAGGAACCACGT 59.242 41.667 0.00 0.00 0.00 4.49
544 1223 5.106830 CCATAACTTTACAAGGAACCACGTC 60.107 44.000 0.00 0.00 0.00 4.34
545 1224 2.476821 ACTTTACAAGGAACCACGTCG 58.523 47.619 0.00 0.00 0.00 5.12
546 1225 2.101249 ACTTTACAAGGAACCACGTCGA 59.899 45.455 0.00 0.00 0.00 4.20
547 1226 3.243975 ACTTTACAAGGAACCACGTCGAT 60.244 43.478 0.00 0.00 0.00 3.59
548 1227 2.642139 TACAAGGAACCACGTCGATC 57.358 50.000 0.00 0.00 0.00 3.69
549 1228 0.677288 ACAAGGAACCACGTCGATCA 59.323 50.000 0.00 0.00 0.00 2.92
550 1229 1.068474 CAAGGAACCACGTCGATCAC 58.932 55.000 0.00 0.00 0.00 3.06
551 1230 0.037605 AAGGAACCACGTCGATCACC 60.038 55.000 0.00 0.00 0.00 4.02
552 1231 0.898789 AGGAACCACGTCGATCACCT 60.899 55.000 0.00 0.00 0.00 4.00
553 1232 0.813184 GGAACCACGTCGATCACCTA 59.187 55.000 0.00 0.00 0.00 3.08
554 1233 1.468736 GGAACCACGTCGATCACCTAC 60.469 57.143 0.00 0.00 0.00 3.18
555 1234 1.471684 GAACCACGTCGATCACCTACT 59.528 52.381 0.00 0.00 0.00 2.57
556 1235 1.093159 ACCACGTCGATCACCTACTC 58.907 55.000 0.00 0.00 0.00 2.59
557 1236 0.381089 CCACGTCGATCACCTACTCC 59.619 60.000 0.00 0.00 0.00 3.85
558 1237 1.092348 CACGTCGATCACCTACTCCA 58.908 55.000 0.00 0.00 0.00 3.86
559 1238 1.676529 CACGTCGATCACCTACTCCAT 59.323 52.381 0.00 0.00 0.00 3.41
560 1239 2.876550 CACGTCGATCACCTACTCCATA 59.123 50.000 0.00 0.00 0.00 2.74
561 1240 3.502595 CACGTCGATCACCTACTCCATAT 59.497 47.826 0.00 0.00 0.00 1.78
562 1241 4.023107 CACGTCGATCACCTACTCCATATT 60.023 45.833 0.00 0.00 0.00 1.28
563 1242 4.023107 ACGTCGATCACCTACTCCATATTG 60.023 45.833 0.00 0.00 0.00 1.90
564 1243 4.215613 CGTCGATCACCTACTCCATATTGA 59.784 45.833 0.00 0.00 0.00 2.57
565 1244 5.278315 CGTCGATCACCTACTCCATATTGAA 60.278 44.000 0.00 0.00 0.00 2.69
566 1245 6.513180 GTCGATCACCTACTCCATATTGAAA 58.487 40.000 0.00 0.00 0.00 2.69
567 1246 6.642950 GTCGATCACCTACTCCATATTGAAAG 59.357 42.308 0.00 0.00 0.00 2.62
568 1247 5.928839 CGATCACCTACTCCATATTGAAAGG 59.071 44.000 0.00 4.21 0.00 3.11
569 1248 6.239317 CGATCACCTACTCCATATTGAAAGGA 60.239 42.308 10.35 0.00 0.00 3.36
570 1249 7.526192 CGATCACCTACTCCATATTGAAAGGAT 60.526 40.741 10.35 0.00 0.00 3.24
571 1250 6.830912 TCACCTACTCCATATTGAAAGGATG 58.169 40.000 10.35 6.53 0.00 3.51
572 1251 5.471456 CACCTACTCCATATTGAAAGGATGC 59.529 44.000 10.35 0.00 0.00 3.91
611 1297 2.178912 TCCGCATCCTCGAAAGTTTT 57.821 45.000 0.00 0.00 0.00 2.43
612 1298 2.500229 TCCGCATCCTCGAAAGTTTTT 58.500 42.857 0.00 0.00 0.00 1.94
613 1299 2.482721 TCCGCATCCTCGAAAGTTTTTC 59.517 45.455 0.00 0.00 0.00 2.29
614 1300 2.484264 CCGCATCCTCGAAAGTTTTTCT 59.516 45.455 0.00 0.00 0.00 2.52
615 1301 3.058224 CCGCATCCTCGAAAGTTTTTCTT 60.058 43.478 0.00 0.00 38.10 2.52
680 1366 5.253330 GGAGTGACAGGTCATATTTGGAAA 58.747 41.667 5.29 0.00 42.18 3.13
682 1368 6.183360 GGAGTGACAGGTCATATTTGGAAATG 60.183 42.308 5.29 0.00 42.18 2.32
724 1433 2.665537 CTGCGTCTTCAGTGATTCTGTC 59.334 50.000 0.00 0.00 43.97 3.51
791 1500 1.033746 TACCACACTCGTCCGATCCC 61.034 60.000 0.00 0.00 0.00 3.85
899 1608 1.211949 ACTATAAATGGCACTGGGCGT 59.788 47.619 0.00 0.00 46.16 5.68
915 1624 2.502080 GTCTCGTGCCGTCACTCG 60.502 66.667 0.00 0.00 40.99 4.18
969 1683 1.194896 CGATTCGTCGCCTTCGTCTC 61.195 60.000 0.00 0.00 36.96 3.36
990 1708 2.834549 CCCTAACAGAAGGAGAGCAGAA 59.165 50.000 0.00 0.00 39.15 3.02
1005 1723 2.016096 GCAGAACAAGAGAGGATGGGC 61.016 57.143 0.00 0.00 0.00 5.36
1287 2005 2.926329 TCCCCTGCTTTCCTAATTCCTT 59.074 45.455 0.00 0.00 0.00 3.36
1288 2006 3.053619 TCCCCTGCTTTCCTAATTCCTTC 60.054 47.826 0.00 0.00 0.00 3.46
1289 2007 3.291584 CCCTGCTTTCCTAATTCCTTCC 58.708 50.000 0.00 0.00 0.00 3.46
1290 2008 3.053320 CCCTGCTTTCCTAATTCCTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
1291 2009 3.950395 CCTGCTTTCCTAATTCCTTCCTG 59.050 47.826 0.00 0.00 0.00 3.86
1292 2010 4.324563 CCTGCTTTCCTAATTCCTTCCTGA 60.325 45.833 0.00 0.00 0.00 3.86
1293 2011 5.255397 TGCTTTCCTAATTCCTTCCTGAA 57.745 39.130 0.00 0.00 0.00 3.02
1294 2012 5.256474 TGCTTTCCTAATTCCTTCCTGAAG 58.744 41.667 0.00 0.00 38.14 3.02
1295 2013 5.014123 TGCTTTCCTAATTCCTTCCTGAAGA 59.986 40.000 8.46 0.00 40.79 2.87
1297 2015 4.762289 TCCTAATTCCTTCCTGAAGAGC 57.238 45.455 8.46 0.00 40.79 4.09
1298 2016 4.366267 TCCTAATTCCTTCCTGAAGAGCT 58.634 43.478 8.46 0.00 40.79 4.09
1299 2017 4.407296 TCCTAATTCCTTCCTGAAGAGCTC 59.593 45.833 5.27 5.27 40.79 4.09
1303 2021 1.836166 TCCTTCCTGAAGAGCTCCATG 59.164 52.381 10.93 0.00 40.79 3.66
1313 2031 1.177401 GAGCTCCATGTTTTGTCCCC 58.823 55.000 0.87 0.00 0.00 4.81
1315 2033 1.147817 AGCTCCATGTTTTGTCCCCTT 59.852 47.619 0.00 0.00 0.00 3.95
1316 2034 1.970640 GCTCCATGTTTTGTCCCCTTT 59.029 47.619 0.00 0.00 0.00 3.11
1317 2035 2.029020 GCTCCATGTTTTGTCCCCTTTC 60.029 50.000 0.00 0.00 0.00 2.62
1318 2036 3.500343 CTCCATGTTTTGTCCCCTTTCT 58.500 45.455 0.00 0.00 0.00 2.52
1320 2038 4.662278 TCCATGTTTTGTCCCCTTTCTAG 58.338 43.478 0.00 0.00 0.00 2.43
1321 2039 4.105697 TCCATGTTTTGTCCCCTTTCTAGT 59.894 41.667 0.00 0.00 0.00 2.57
1322 2040 4.459337 CCATGTTTTGTCCCCTTTCTAGTC 59.541 45.833 0.00 0.00 0.00 2.59
1323 2041 5.316987 CATGTTTTGTCCCCTTTCTAGTCT 58.683 41.667 0.00 0.00 0.00 3.24
1325 2043 6.697641 TGTTTTGTCCCCTTTCTAGTCTAT 57.302 37.500 0.00 0.00 0.00 1.98
1326 2044 6.708285 TGTTTTGTCCCCTTTCTAGTCTATC 58.292 40.000 0.00 0.00 0.00 2.08
1327 2045 6.500751 TGTTTTGTCCCCTTTCTAGTCTATCT 59.499 38.462 0.00 0.00 0.00 1.98
1406 2124 4.192317 GTTGTATGACCTCCATTCAGACC 58.808 47.826 0.00 0.00 34.86 3.85
1410 2128 3.757947 TGACCTCCATTCAGACCTAGA 57.242 47.619 0.00 0.00 0.00 2.43
1413 2131 3.370104 ACCTCCATTCAGACCTAGAGTG 58.630 50.000 0.00 0.00 0.00 3.51
1415 2133 3.772025 CCTCCATTCAGACCTAGAGTGTT 59.228 47.826 0.00 0.00 0.00 3.32
1416 2134 4.223923 CCTCCATTCAGACCTAGAGTGTTT 59.776 45.833 0.00 0.00 0.00 2.83
1417 2135 5.152623 TCCATTCAGACCTAGAGTGTTTG 57.847 43.478 0.00 0.00 0.00 2.93
1418 2136 4.838423 TCCATTCAGACCTAGAGTGTTTGA 59.162 41.667 0.00 0.00 0.00 2.69
1419 2137 5.047021 TCCATTCAGACCTAGAGTGTTTGAG 60.047 44.000 0.00 0.00 29.81 3.02
1422 2140 5.455056 TCAGACCTAGAGTGTTTGAGTTC 57.545 43.478 0.00 0.00 0.00 3.01
1423 2141 5.141182 TCAGACCTAGAGTGTTTGAGTTCT 58.859 41.667 0.00 0.00 0.00 3.01
1424 2142 6.304624 TCAGACCTAGAGTGTTTGAGTTCTA 58.695 40.000 0.00 0.00 0.00 2.10
1425 2143 6.207025 TCAGACCTAGAGTGTTTGAGTTCTAC 59.793 42.308 0.00 0.00 0.00 2.59
1426 2144 5.477637 AGACCTAGAGTGTTTGAGTTCTACC 59.522 44.000 0.00 0.00 0.00 3.18
1427 2145 5.395611 ACCTAGAGTGTTTGAGTTCTACCT 58.604 41.667 0.00 0.00 0.00 3.08
1428 2146 6.550163 ACCTAGAGTGTTTGAGTTCTACCTA 58.450 40.000 0.00 0.00 0.00 3.08
1429 2147 6.660094 ACCTAGAGTGTTTGAGTTCTACCTAG 59.340 42.308 0.00 0.00 0.00 3.02
1430 2148 6.660094 CCTAGAGTGTTTGAGTTCTACCTAGT 59.340 42.308 0.00 0.00 0.00 2.57
1431 2149 7.828223 CCTAGAGTGTTTGAGTTCTACCTAGTA 59.172 40.741 0.00 0.00 0.00 1.82
1432 2150 7.451501 AGAGTGTTTGAGTTCTACCTAGTAC 57.548 40.000 0.00 0.00 0.00 2.73
1433 2151 7.232910 AGAGTGTTTGAGTTCTACCTAGTACT 58.767 38.462 0.00 0.00 36.77 2.73
1434 2152 7.391275 AGAGTGTTTGAGTTCTACCTAGTACTC 59.609 40.741 0.00 10.62 45.39 2.59
1435 2153 6.433716 AGTGTTTGAGTTCTACCTAGTACTCC 59.566 42.308 13.56 3.30 44.91 3.85
1459 2178 7.176865 TCCTATATTTCAGAGAATACGACCCTG 59.823 40.741 0.00 0.00 0.00 4.45
1460 2179 2.961526 TTCAGAGAATACGACCCTGC 57.038 50.000 0.00 0.00 0.00 4.85
1466 2185 0.107654 GAATACGACCCTGCTTGGCT 60.108 55.000 0.00 0.00 0.00 4.75
1467 2186 0.392998 AATACGACCCTGCTTGGCTG 60.393 55.000 0.00 0.00 0.00 4.85
1477 2196 0.828762 TGCTTGGCTGCCTGTGAAAT 60.829 50.000 21.03 0.00 0.00 2.17
1479 2198 1.545582 GCTTGGCTGCCTGTGAAATTA 59.454 47.619 21.03 0.00 0.00 1.40
1512 2232 9.457436 TGAGGTTAAATTAATTCAGTTACTCCC 57.543 33.333 0.10 0.00 0.00 4.30
1513 2233 9.682465 GAGGTTAAATTAATTCAGTTACTCCCT 57.318 33.333 0.10 0.00 0.00 4.20
1514 2234 9.682465 AGGTTAAATTAATTCAGTTACTCCCTC 57.318 33.333 0.10 0.00 0.00 4.30
1515 2235 9.682465 GGTTAAATTAATTCAGTTACTCCCTCT 57.318 33.333 0.10 0.00 0.00 3.69
1519 2239 9.620259 AAATTAATTCAGTTACTCCCTCTGATC 57.380 33.333 0.10 0.00 37.91 2.92
1520 2240 5.622346 AATTCAGTTACTCCCTCTGATCC 57.378 43.478 0.00 0.00 37.91 3.36
1521 2241 3.757947 TCAGTTACTCCCTCTGATCCA 57.242 47.619 0.00 0.00 34.00 3.41
1522 2242 4.271807 TCAGTTACTCCCTCTGATCCAT 57.728 45.455 0.00 0.00 34.00 3.41
1523 2243 5.403558 TCAGTTACTCCCTCTGATCCATA 57.596 43.478 0.00 0.00 34.00 2.74
1524 2244 5.970289 TCAGTTACTCCCTCTGATCCATAT 58.030 41.667 0.00 0.00 34.00 1.78
1525 2245 5.777223 TCAGTTACTCCCTCTGATCCATATG 59.223 44.000 0.00 0.00 34.00 1.78
1526 2246 5.777223 CAGTTACTCCCTCTGATCCATATGA 59.223 44.000 3.65 0.00 0.00 2.15
1527 2247 6.015918 AGTTACTCCCTCTGATCCATATGAG 58.984 44.000 3.65 0.00 0.00 2.90
1528 2248 4.484026 ACTCCCTCTGATCCATATGAGT 57.516 45.455 3.65 0.00 0.00 3.41
1529 2249 5.607168 ACTCCCTCTGATCCATATGAGTA 57.393 43.478 3.65 0.00 30.56 2.59
1530 2250 5.329399 ACTCCCTCTGATCCATATGAGTAC 58.671 45.833 3.65 0.00 30.56 2.73
1531 2251 5.162936 ACTCCCTCTGATCCATATGAGTACA 60.163 44.000 3.65 0.00 30.56 2.90
1532 2252 5.715921 TCCCTCTGATCCATATGAGTACAA 58.284 41.667 3.65 0.00 0.00 2.41
1533 2253 6.143206 TCCCTCTGATCCATATGAGTACAAA 58.857 40.000 3.65 0.00 0.00 2.83
1534 2254 6.268617 TCCCTCTGATCCATATGAGTACAAAG 59.731 42.308 3.65 0.00 0.00 2.77
1535 2255 6.042552 CCCTCTGATCCATATGAGTACAAAGT 59.957 42.308 3.65 0.00 0.00 2.66
1536 2256 7.233553 CCCTCTGATCCATATGAGTACAAAGTA 59.766 40.741 3.65 0.00 0.00 2.24
1537 2257 8.811017 CCTCTGATCCATATGAGTACAAAGTAT 58.189 37.037 3.65 0.00 0.00 2.12
1579 2299 8.703604 AATCAACGATAATTAGTATGGATCGG 57.296 34.615 8.81 0.00 42.78 4.18
1580 2300 7.457024 TCAACGATAATTAGTATGGATCGGA 57.543 36.000 8.81 0.00 42.78 4.55
1581 2301 7.535997 TCAACGATAATTAGTATGGATCGGAG 58.464 38.462 8.81 2.37 42.78 4.63
1582 2302 6.452494 ACGATAATTAGTATGGATCGGAGG 57.548 41.667 8.81 0.00 42.78 4.30
1583 2303 5.360144 ACGATAATTAGTATGGATCGGAGGG 59.640 44.000 8.81 0.00 42.78 4.30
1584 2304 5.593095 CGATAATTAGTATGGATCGGAGGGA 59.407 44.000 0.00 0.00 36.60 4.20
1585 2305 6.238786 CGATAATTAGTATGGATCGGAGGGAG 60.239 46.154 0.00 0.00 36.60 4.30
1586 2306 3.897657 TTAGTATGGATCGGAGGGAGT 57.102 47.619 0.00 0.00 0.00 3.85
1587 2307 5.531753 ATTAGTATGGATCGGAGGGAGTA 57.468 43.478 0.00 0.00 0.00 2.59
1600 2320 3.778629 GGAGGGAGTAGTAAATTGTGGGA 59.221 47.826 0.00 0.00 0.00 4.37
1601 2321 4.141688 GGAGGGAGTAGTAAATTGTGGGAG 60.142 50.000 0.00 0.00 0.00 4.30
1602 2322 4.436079 AGGGAGTAGTAAATTGTGGGAGT 58.564 43.478 0.00 0.00 0.00 3.85
1603 2323 5.596763 AGGGAGTAGTAAATTGTGGGAGTA 58.403 41.667 0.00 0.00 0.00 2.59
1604 2324 5.661759 AGGGAGTAGTAAATTGTGGGAGTAG 59.338 44.000 0.00 0.00 0.00 2.57
1650 2475 4.345257 TCTCTATATTGGGGCACTCAGAAC 59.655 45.833 0.00 0.00 0.00 3.01
1670 2495 9.978044 TCAGAACTTCTAGAACTTTACCTTTAC 57.022 33.333 0.00 0.00 0.00 2.01
1671 2496 9.205719 CAGAACTTCTAGAACTTTACCTTTACC 57.794 37.037 0.00 0.00 0.00 2.85
1675 2500 9.557061 ACTTCTAGAACTTTACCTTTACCTTTG 57.443 33.333 0.00 0.00 0.00 2.77
1676 2501 9.557061 CTTCTAGAACTTTACCTTTACCTTTGT 57.443 33.333 0.00 0.00 0.00 2.83
1677 2502 9.910267 TTCTAGAACTTTACCTTTACCTTTGTT 57.090 29.630 0.00 0.00 0.00 2.83
1940 4801 3.314331 CAGTCCCGGTGTGAGCCT 61.314 66.667 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 817 4.344865 AACAATGTCGGGGCCGCT 62.345 61.111 18.79 0.00 39.59 5.52
362 1041 4.529219 TCTCATCCGCCGCGCATT 62.529 61.111 8.75 0.00 0.00 3.56
379 1058 1.189524 TGGACCCGGTCATCGTCTTT 61.190 55.000 19.43 0.00 37.11 2.52
441 1120 2.037902 TGGATTTGTCTAACACGGAGCA 59.962 45.455 0.00 0.00 0.00 4.26
512 1191 4.201881 CCTTGTAAAGTTATGGGCGCTAAC 60.202 45.833 7.64 8.72 44.25 2.34
525 1204 2.101249 TCGACGTGGTTCCTTGTAAAGT 59.899 45.455 0.00 0.00 44.25 2.66
526 1205 2.746269 TCGACGTGGTTCCTTGTAAAG 58.254 47.619 0.00 0.00 45.69 1.85
527 1206 2.886862 TCGACGTGGTTCCTTGTAAA 57.113 45.000 0.00 0.00 0.00 2.01
528 1207 2.296752 TGATCGACGTGGTTCCTTGTAA 59.703 45.455 0.00 0.00 0.00 2.41
529 1208 1.887854 TGATCGACGTGGTTCCTTGTA 59.112 47.619 0.00 0.00 0.00 2.41
530 1209 0.677288 TGATCGACGTGGTTCCTTGT 59.323 50.000 0.00 0.00 0.00 3.16
531 1210 1.068474 GTGATCGACGTGGTTCCTTG 58.932 55.000 0.00 0.00 0.00 3.61
532 1211 0.037605 GGTGATCGACGTGGTTCCTT 60.038 55.000 0.00 0.00 0.00 3.36
533 1212 0.898789 AGGTGATCGACGTGGTTCCT 60.899 55.000 0.00 0.00 0.00 3.36
534 1213 0.813184 TAGGTGATCGACGTGGTTCC 59.187 55.000 0.00 0.00 0.00 3.62
535 1214 1.471684 AGTAGGTGATCGACGTGGTTC 59.528 52.381 0.00 0.00 0.00 3.62
536 1215 1.471684 GAGTAGGTGATCGACGTGGTT 59.528 52.381 0.00 0.00 0.00 3.67
537 1216 1.093159 GAGTAGGTGATCGACGTGGT 58.907 55.000 0.00 0.00 0.00 4.16
538 1217 0.381089 GGAGTAGGTGATCGACGTGG 59.619 60.000 0.00 0.00 0.00 4.94
539 1218 1.092348 TGGAGTAGGTGATCGACGTG 58.908 55.000 0.00 0.00 0.00 4.49
540 1219 2.054232 ATGGAGTAGGTGATCGACGT 57.946 50.000 0.00 0.00 0.00 4.34
541 1220 4.215613 TCAATATGGAGTAGGTGATCGACG 59.784 45.833 0.00 0.00 0.00 5.12
542 1221 5.707242 TCAATATGGAGTAGGTGATCGAC 57.293 43.478 0.00 0.00 0.00 4.20
543 1222 6.239317 CCTTTCAATATGGAGTAGGTGATCGA 60.239 42.308 0.00 0.00 0.00 3.59
544 1223 5.928839 CCTTTCAATATGGAGTAGGTGATCG 59.071 44.000 3.27 0.00 0.00 3.69
545 1224 7.067496 TCCTTTCAATATGGAGTAGGTGATC 57.933 40.000 9.17 0.00 0.00 2.92
546 1225 7.456725 CATCCTTTCAATATGGAGTAGGTGAT 58.543 38.462 9.17 0.00 33.90 3.06
547 1226 6.688922 GCATCCTTTCAATATGGAGTAGGTGA 60.689 42.308 9.17 0.00 33.90 4.02
548 1227 5.471456 GCATCCTTTCAATATGGAGTAGGTG 59.529 44.000 9.17 8.33 33.90 4.00
549 1228 5.625150 GCATCCTTTCAATATGGAGTAGGT 58.375 41.667 9.17 0.00 33.90 3.08
550 1229 4.692625 CGCATCCTTTCAATATGGAGTAGG 59.307 45.833 4.62 4.62 33.90 3.18
551 1230 5.406780 GTCGCATCCTTTCAATATGGAGTAG 59.593 44.000 0.00 0.00 33.90 2.57
552 1231 5.297547 GTCGCATCCTTTCAATATGGAGTA 58.702 41.667 0.00 0.00 33.90 2.59
553 1232 4.130118 GTCGCATCCTTTCAATATGGAGT 58.870 43.478 0.00 0.00 33.90 3.85
554 1233 3.499918 GGTCGCATCCTTTCAATATGGAG 59.500 47.826 0.00 0.00 33.90 3.86
555 1234 3.118075 TGGTCGCATCCTTTCAATATGGA 60.118 43.478 0.00 0.00 34.81 3.41
556 1235 3.213506 TGGTCGCATCCTTTCAATATGG 58.786 45.455 0.00 0.00 0.00 2.74
557 1236 5.106555 GGTATGGTCGCATCCTTTCAATATG 60.107 44.000 0.00 0.00 0.00 1.78
558 1237 5.003804 GGTATGGTCGCATCCTTTCAATAT 58.996 41.667 0.00 0.00 0.00 1.28
559 1238 4.102524 AGGTATGGTCGCATCCTTTCAATA 59.897 41.667 0.00 0.00 0.00 1.90
560 1239 3.117888 AGGTATGGTCGCATCCTTTCAAT 60.118 43.478 0.00 0.00 0.00 2.57
561 1240 2.238646 AGGTATGGTCGCATCCTTTCAA 59.761 45.455 0.00 0.00 0.00 2.69
562 1241 1.837439 AGGTATGGTCGCATCCTTTCA 59.163 47.619 0.00 0.00 0.00 2.69
563 1242 2.622064 AGGTATGGTCGCATCCTTTC 57.378 50.000 0.00 0.00 0.00 2.62
564 1243 2.421529 GGAAGGTATGGTCGCATCCTTT 60.422 50.000 0.00 0.00 38.42 3.11
565 1244 1.141053 GGAAGGTATGGTCGCATCCTT 59.859 52.381 0.00 0.00 40.59 3.36
566 1245 0.759346 GGAAGGTATGGTCGCATCCT 59.241 55.000 0.00 0.00 0.00 3.24
567 1246 0.468226 TGGAAGGTATGGTCGCATCC 59.532 55.000 0.00 0.00 0.00 3.51
568 1247 2.037772 AGATGGAAGGTATGGTCGCATC 59.962 50.000 0.00 0.00 0.00 3.91
569 1248 2.037772 GAGATGGAAGGTATGGTCGCAT 59.962 50.000 0.00 0.00 0.00 4.73
570 1249 1.412710 GAGATGGAAGGTATGGTCGCA 59.587 52.381 0.00 0.00 0.00 5.10
571 1250 1.412710 TGAGATGGAAGGTATGGTCGC 59.587 52.381 0.00 0.00 0.00 5.19
572 1251 3.306364 GGATGAGATGGAAGGTATGGTCG 60.306 52.174 0.00 0.00 0.00 4.79
611 1297 6.618287 TGCGAGAATTCTCAAAAGAAAGAA 57.382 33.333 29.93 7.63 44.49 2.52
612 1298 6.427853 TGATGCGAGAATTCTCAAAAGAAAGA 59.572 34.615 29.93 6.38 44.49 2.52
613 1299 6.605849 TGATGCGAGAATTCTCAAAAGAAAG 58.394 36.000 29.93 15.06 44.49 2.62
614 1300 6.558771 TGATGCGAGAATTCTCAAAAGAAA 57.441 33.333 29.93 10.28 44.49 2.52
615 1301 6.373779 GTTGATGCGAGAATTCTCAAAAGAA 58.626 36.000 29.93 16.10 45.36 2.52
616 1302 5.106555 GGTTGATGCGAGAATTCTCAAAAGA 60.107 40.000 29.93 11.67 43.00 2.52
617 1303 5.091431 GGTTGATGCGAGAATTCTCAAAAG 58.909 41.667 29.93 17.25 43.00 2.27
664 1350 3.796504 GCCGCATTTCCAAATATGACCTG 60.797 47.826 0.00 0.00 0.00 4.00
665 1351 2.362077 GCCGCATTTCCAAATATGACCT 59.638 45.455 0.00 0.00 0.00 3.85
724 1433 2.579873 CACCTTCATGGAATGGGCTAG 58.420 52.381 0.00 0.00 46.73 3.42
791 1500 4.473520 ATCAAGGGCGGACGCTGG 62.474 66.667 16.72 4.18 39.39 4.85
915 1624 1.248785 TGGGTCGAGAGTGTAGGTGC 61.249 60.000 0.00 0.00 0.00 5.01
969 1683 2.461695 TCTGCTCTCCTTCTGTTAGGG 58.538 52.381 0.00 0.00 35.90 3.53
990 1708 1.333636 CCGAGCCCATCCTCTCTTGT 61.334 60.000 0.00 0.00 0.00 3.16
1048 1766 1.533731 GAGATCGTCGATGTCCCTCTC 59.466 57.143 18.99 12.18 0.00 3.20
1049 1767 1.600023 GAGATCGTCGATGTCCCTCT 58.400 55.000 18.99 7.25 0.00 3.69
1050 1768 0.594110 GGAGATCGTCGATGTCCCTC 59.406 60.000 31.52 21.39 43.88 4.30
1051 1769 2.721945 GGAGATCGTCGATGTCCCT 58.278 57.895 31.52 15.35 43.88 4.20
1287 2005 3.181440 ACAAAACATGGAGCTCTTCAGGA 60.181 43.478 14.64 0.00 0.00 3.86
1288 2006 3.152341 ACAAAACATGGAGCTCTTCAGG 58.848 45.455 14.64 8.37 0.00 3.86
1289 2007 3.190118 GGACAAAACATGGAGCTCTTCAG 59.810 47.826 14.64 4.16 0.00 3.02
1290 2008 3.149196 GGACAAAACATGGAGCTCTTCA 58.851 45.455 14.64 4.20 0.00 3.02
1291 2009 2.489722 GGGACAAAACATGGAGCTCTTC 59.510 50.000 14.64 0.00 0.00 2.87
1292 2010 2.519013 GGGACAAAACATGGAGCTCTT 58.481 47.619 14.64 0.00 0.00 2.85
1293 2011 1.272147 GGGGACAAAACATGGAGCTCT 60.272 52.381 14.64 0.00 0.00 4.09
1294 2012 1.177401 GGGGACAAAACATGGAGCTC 58.823 55.000 4.71 4.71 0.00 4.09
1295 2013 0.779997 AGGGGACAAAACATGGAGCT 59.220 50.000 0.00 0.00 0.00 4.09
1297 2015 3.500343 AGAAAGGGGACAAAACATGGAG 58.500 45.455 0.00 0.00 0.00 3.86
1298 2016 3.611025 AGAAAGGGGACAAAACATGGA 57.389 42.857 0.00 0.00 0.00 3.41
1299 2017 4.407365 ACTAGAAAGGGGACAAAACATGG 58.593 43.478 0.00 0.00 0.00 3.66
1303 2021 6.948589 AGATAGACTAGAAAGGGGACAAAAC 58.051 40.000 0.00 0.00 0.00 2.43
1361 2079 2.028130 AGAATCTAGCCCGACTCACAG 58.972 52.381 0.00 0.00 0.00 3.66
1373 2091 6.127338 TGGAGGTCATACAACACAGAATCTAG 60.127 42.308 0.00 0.00 0.00 2.43
1406 2124 7.690952 ACTAGGTAGAACTCAAACACTCTAG 57.309 40.000 0.00 0.00 0.00 2.43
1410 2128 6.433716 GGAGTACTAGGTAGAACTCAAACACT 59.566 42.308 0.00 0.00 40.09 3.55
1413 2131 8.750515 ATAGGAGTACTAGGTAGAACTCAAAC 57.249 38.462 0.00 0.00 40.09 2.93
1430 2148 9.228949 GGTCGTATTCTCTGAAATATAGGAGTA 57.771 37.037 0.00 0.00 0.00 2.59
1431 2149 7.177041 GGGTCGTATTCTCTGAAATATAGGAGT 59.823 40.741 0.00 0.00 0.00 3.85
1432 2150 7.394923 AGGGTCGTATTCTCTGAAATATAGGAG 59.605 40.741 0.00 0.00 0.00 3.69
1433 2151 7.176865 CAGGGTCGTATTCTCTGAAATATAGGA 59.823 40.741 0.00 0.00 0.00 2.94
1434 2152 7.316640 CAGGGTCGTATTCTCTGAAATATAGG 58.683 42.308 0.00 0.00 0.00 2.57
1435 2153 6.809196 GCAGGGTCGTATTCTCTGAAATATAG 59.191 42.308 0.00 0.00 0.00 1.31
1443 2161 2.544685 CAAGCAGGGTCGTATTCTCTG 58.455 52.381 0.00 0.00 0.00 3.35
1444 2162 1.482593 CCAAGCAGGGTCGTATTCTCT 59.517 52.381 0.00 0.00 0.00 3.10
1448 2166 4.637771 GCCAAGCAGGGTCGTATT 57.362 55.556 0.00 0.00 38.09 1.89
1459 2178 0.319405 AATTTCACAGGCAGCCAAGC 59.681 50.000 15.80 0.00 0.00 4.01
1460 2179 3.940209 TTAATTTCACAGGCAGCCAAG 57.060 42.857 15.80 8.41 0.00 3.61
1466 2185 5.221422 CCTCAAGGTTTTAATTTCACAGGCA 60.221 40.000 0.00 0.00 0.00 4.75
1467 2186 5.230182 CCTCAAGGTTTTAATTTCACAGGC 58.770 41.667 0.00 0.00 0.00 4.85
1493 2212 9.620259 GATCAGAGGGAGTAACTGAATTAATTT 57.380 33.333 1.43 0.00 42.55 1.82
1497 2217 6.202331 TGGATCAGAGGGAGTAACTGAATTA 58.798 40.000 0.00 0.00 42.55 1.40
1498 2218 5.032846 TGGATCAGAGGGAGTAACTGAATT 58.967 41.667 0.00 0.00 42.55 2.17
1508 2228 5.328565 TGTACTCATATGGATCAGAGGGAG 58.671 45.833 2.13 0.00 32.52 4.30
1509 2229 5.339423 TGTACTCATATGGATCAGAGGGA 57.661 43.478 2.13 0.00 32.52 4.20
1510 2230 6.042552 ACTTTGTACTCATATGGATCAGAGGG 59.957 42.308 2.13 0.00 32.52 4.30
1511 2231 7.060383 ACTTTGTACTCATATGGATCAGAGG 57.940 40.000 2.13 0.00 32.52 3.69
1553 2273 9.151471 CCGATCCATACTAATTATCGTTGATTT 57.849 33.333 0.00 0.00 38.15 2.17
1554 2274 8.528643 TCCGATCCATACTAATTATCGTTGATT 58.471 33.333 0.00 0.00 38.15 2.57
1555 2275 8.063200 TCCGATCCATACTAATTATCGTTGAT 57.937 34.615 0.00 0.00 38.15 2.57
1556 2276 7.362660 CCTCCGATCCATACTAATTATCGTTGA 60.363 40.741 0.00 0.00 38.15 3.18
1557 2277 6.752351 CCTCCGATCCATACTAATTATCGTTG 59.248 42.308 0.00 0.00 38.15 4.10
1558 2278 6.127423 CCCTCCGATCCATACTAATTATCGTT 60.127 42.308 0.00 0.00 38.15 3.85
1559 2279 5.360144 CCCTCCGATCCATACTAATTATCGT 59.640 44.000 0.00 0.00 38.15 3.73
1560 2280 5.593095 TCCCTCCGATCCATACTAATTATCG 59.407 44.000 0.00 0.00 39.23 2.92
1561 2281 6.608002 ACTCCCTCCGATCCATACTAATTATC 59.392 42.308 0.00 0.00 0.00 1.75
1562 2282 6.503944 ACTCCCTCCGATCCATACTAATTAT 58.496 40.000 0.00 0.00 0.00 1.28
1563 2283 5.900437 ACTCCCTCCGATCCATACTAATTA 58.100 41.667 0.00 0.00 0.00 1.40
1564 2284 4.753186 ACTCCCTCCGATCCATACTAATT 58.247 43.478 0.00 0.00 0.00 1.40
1565 2285 4.405756 ACTCCCTCCGATCCATACTAAT 57.594 45.455 0.00 0.00 0.00 1.73
1566 2286 3.897657 ACTCCCTCCGATCCATACTAA 57.102 47.619 0.00 0.00 0.00 2.24
1567 2287 3.915073 ACTACTCCCTCCGATCCATACTA 59.085 47.826 0.00 0.00 0.00 1.82
1568 2288 2.717515 ACTACTCCCTCCGATCCATACT 59.282 50.000 0.00 0.00 0.00 2.12
1569 2289 3.157750 ACTACTCCCTCCGATCCATAC 57.842 52.381 0.00 0.00 0.00 2.39
1570 2290 5.329191 TTTACTACTCCCTCCGATCCATA 57.671 43.478 0.00 0.00 0.00 2.74
1571 2291 3.897657 TTACTACTCCCTCCGATCCAT 57.102 47.619 0.00 0.00 0.00 3.41
1572 2292 3.675348 TTTACTACTCCCTCCGATCCA 57.325 47.619 0.00 0.00 0.00 3.41
1573 2293 4.344390 ACAATTTACTACTCCCTCCGATCC 59.656 45.833 0.00 0.00 0.00 3.36
1574 2294 5.290386 CACAATTTACTACTCCCTCCGATC 58.710 45.833 0.00 0.00 0.00 3.69
1575 2295 4.101119 CCACAATTTACTACTCCCTCCGAT 59.899 45.833 0.00 0.00 0.00 4.18
1576 2296 3.449737 CCACAATTTACTACTCCCTCCGA 59.550 47.826 0.00 0.00 0.00 4.55
1577 2297 3.431766 CCCACAATTTACTACTCCCTCCG 60.432 52.174 0.00 0.00 0.00 4.63
1578 2298 3.778629 TCCCACAATTTACTACTCCCTCC 59.221 47.826 0.00 0.00 0.00 4.30
1579 2299 4.470304 ACTCCCACAATTTACTACTCCCTC 59.530 45.833 0.00 0.00 0.00 4.30
1580 2300 4.436079 ACTCCCACAATTTACTACTCCCT 58.564 43.478 0.00 0.00 0.00 4.20
1581 2301 4.838904 ACTCCCACAATTTACTACTCCC 57.161 45.455 0.00 0.00 0.00 4.30
1582 2302 6.541934 ACTACTCCCACAATTTACTACTCC 57.458 41.667 0.00 0.00 0.00 3.85
1587 2307 9.582648 ACAAATTTACTACTCCCACAATTTACT 57.417 29.630 0.00 0.00 0.00 2.24
1630 2403 4.696479 AGTTCTGAGTGCCCCAATATAG 57.304 45.455 0.00 0.00 0.00 1.31
1633 2406 2.912956 AGAAGTTCTGAGTGCCCCAATA 59.087 45.455 4.10 0.00 0.00 1.90
1634 2407 1.707427 AGAAGTTCTGAGTGCCCCAAT 59.293 47.619 4.10 0.00 0.00 3.16
1635 2408 1.140312 AGAAGTTCTGAGTGCCCCAA 58.860 50.000 4.10 0.00 0.00 4.12
1650 2475 9.557061 ACAAAGGTAAAGGTAAAGTTCTAGAAG 57.443 33.333 5.12 0.00 0.00 2.85
1704 4565 9.082313 ACTCTTGGAAGTGATATTCATGTTTTT 57.918 29.630 0.00 0.00 0.00 1.94
1705 4566 8.641498 ACTCTTGGAAGTGATATTCATGTTTT 57.359 30.769 0.00 0.00 0.00 2.43
1706 4567 9.739276 TTACTCTTGGAAGTGATATTCATGTTT 57.261 29.630 0.00 0.00 0.00 2.83
1707 4568 9.739276 TTTACTCTTGGAAGTGATATTCATGTT 57.261 29.630 0.00 0.00 0.00 2.71
1708 4569 9.739276 TTTTACTCTTGGAAGTGATATTCATGT 57.261 29.630 0.00 0.00 0.00 3.21
1754 4615 3.616821 CCATGACGTCGCTCTTATCAAAA 59.383 43.478 11.62 0.00 0.00 2.44
1940 4801 2.614969 AGCCATCTCCCCTGCCAA 60.615 61.111 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.