Multiple sequence alignment - TraesCS4B01G183800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G183800 chr4B 100.000 7563 0 0 1 7563 403056978 403049416 0.000000e+00 13967.0
1 TraesCS4B01G183800 chr4B 100.000 292 0 0 7827 8118 403049152 403048861 2.580000e-149 540.0
2 TraesCS4B01G183800 chr4B 81.879 596 94 12 6572 7162 403035705 403035119 2.630000e-134 490.0
3 TraesCS4B01G183800 chr4B 96.198 263 10 0 2494 2756 407417519 407417781 1.620000e-116 431.0
4 TraesCS4B01G183800 chr4B 95.539 269 12 0 2492 2760 556471477 556471209 1.620000e-116 431.0
5 TraesCS4B01G183800 chr4B 78.561 695 101 35 740 1417 403036478 403035815 1.630000e-111 414.0
6 TraesCS4B01G183800 chr7B 97.038 3174 74 11 2755 5924 113142208 113139051 0.000000e+00 5323.0
7 TraesCS4B01G183800 chr7B 96.366 2504 74 13 1 2495 113144702 113142207 0.000000e+00 4104.0
8 TraesCS4B01G183800 chr7B 96.838 1518 45 3 6048 7563 113138844 113137328 0.000000e+00 2534.0
9 TraesCS4B01G183800 chr7B 97.619 294 5 2 7827 8118 113137215 113136922 3.380000e-138 503.0
10 TraesCS4B01G183800 chr7B 81.208 596 98 12 6572 7162 113131703 113131117 1.230000e-127 468.0
11 TraesCS4B01G183800 chr7B 96.591 264 9 0 2493 2756 699405945 699406208 9.670000e-119 438.0
12 TraesCS4B01G183800 chr7B 78.993 695 98 36 740 1417 113132476 113131813 1.620000e-116 431.0
13 TraesCS4B01G183800 chr7B 83.439 314 43 3 2182 2495 750575435 750575739 4.800000e-72 283.0
14 TraesCS4B01G183800 chr7B 83.582 201 22 4 1572 1768 146139191 146138998 2.330000e-40 178.0
15 TraesCS4B01G183800 chr7A 90.366 3280 255 40 2755 5994 150909305 150906047 0.000000e+00 4250.0
16 TraesCS4B01G183800 chr7A 89.211 1344 133 5 6000 7333 150905968 150904627 0.000000e+00 1668.0
17 TraesCS4B01G183800 chr7A 91.336 958 33 14 488 1419 150911286 150910353 0.000000e+00 1264.0
18 TraesCS4B01G183800 chr7A 86.817 622 52 10 1878 2495 150909899 150909304 0.000000e+00 667.0
19 TraesCS4B01G183800 chr7A 93.168 161 11 0 7332 7492 150902037 150901877 3.790000e-58 237.0
20 TraesCS4B01G183800 chr7A 90.217 92 9 0 1572 1663 184932556 184932465 3.980000e-23 121.0
21 TraesCS4B01G183800 chr7D 92.566 1695 102 15 4261 5939 151021584 151019898 0.000000e+00 2410.0
22 TraesCS4B01G183800 chr7D 92.929 1400 89 4 6172 7563 151019522 151018125 0.000000e+00 2028.0
23 TraesCS4B01G183800 chr7D 91.198 1511 83 23 2755 4228 151023081 151021584 0.000000e+00 2008.0
24 TraesCS4B01G183800 chr7D 93.447 824 45 6 671 1493 151024952 151024137 0.000000e+00 1214.0
25 TraesCS4B01G183800 chr7D 92.514 521 39 0 1975 2495 151023600 151023080 0.000000e+00 747.0
26 TraesCS4B01G183800 chr7D 83.225 614 89 6 6588 7200 151013600 151013000 1.190000e-152 551.0
27 TraesCS4B01G183800 chr7D 90.747 281 15 5 1491 1768 151024034 151023762 1.670000e-96 364.0
28 TraesCS4B01G183800 chr7D 91.700 253 12 5 7827 8078 151017847 151017603 7.800000e-90 342.0
29 TraesCS4B01G183800 chr7D 86.869 297 36 3 1 295 436475888 436476183 6.070000e-86 329.0
30 TraesCS4B01G183800 chr7D 85.780 218 30 1 302 518 151036511 151036294 6.340000e-56 230.0
31 TraesCS4B01G183800 chr7D 92.391 92 7 0 1572 1663 180412587 180412496 1.840000e-26 132.0
32 TraesCS4B01G183800 chr7D 87.500 64 4 4 343 404 591096404 591096465 4.060000e-08 71.3
33 TraesCS4B01G183800 chr7D 89.286 56 4 2 349 402 403419638 403419583 1.460000e-07 69.4
34 TraesCS4B01G183800 chr7D 97.297 37 1 0 6262 6298 452278256 452278220 6.800000e-06 63.9
35 TraesCS4B01G183800 chr3D 72.044 1835 413 79 3434 5211 150866047 150867838 9.600000e-124 455.0
36 TraesCS4B01G183800 chr3D 89.404 302 21 8 1 299 63395945 63395652 3.580000e-98 370.0
37 TraesCS4B01G183800 chr6B 96.970 264 8 0 2493 2756 256140567 256140830 2.080000e-120 444.0
38 TraesCS4B01G183800 chr3B 95.971 273 10 1 2488 2760 51813443 51813172 7.480000e-120 442.0
39 TraesCS4B01G183800 chr3B 86.517 89 10 2 315 401 507146085 507146173 6.710000e-16 97.1
40 TraesCS4B01G183800 chr1B 95.971 273 10 1 2485 2756 553834577 553834849 7.480000e-120 442.0
41 TraesCS4B01G183800 chr1B 96.604 265 9 0 2492 2756 492678733 492678997 2.690000e-119 440.0
42 TraesCS4B01G183800 chr1B 96.283 269 9 1 2492 2759 620382419 620382151 2.690000e-119 440.0
43 TraesCS4B01G183800 chr1B 90.940 298 22 4 1 297 223768205 223768498 5.900000e-106 396.0
44 TraesCS4B01G183800 chr2B 94.624 279 14 1 2493 2771 38724500 38724223 1.620000e-116 431.0
45 TraesCS4B01G183800 chr2B 88.176 296 27 7 1 290 695919754 695920047 6.030000e-91 346.0
46 TraesCS4B01G183800 chr2B 88.215 297 26 7 1 290 695986995 695987289 6.030000e-91 346.0
47 TraesCS4B01G183800 chr2B 87.162 296 30 7 1 290 695956221 695956514 6.070000e-86 329.0
48 TraesCS4B01G183800 chr2B 72.359 1136 257 46 3433 4530 485329252 485328136 1.020000e-78 305.0
49 TraesCS4B01G183800 chr5D 89.933 298 25 5 1 297 443352670 443352963 5.950000e-101 379.0
50 TraesCS4B01G183800 chr2D 89.701 301 23 7 1 298 601265359 601265064 2.140000e-100 377.0
51 TraesCS4B01G183800 chr5A 69.873 1809 454 72 3425 5182 624220577 624222345 3.790000e-58 237.0
52 TraesCS4B01G183800 chrUn 74.233 326 69 12 4915 5230 61020275 61020595 1.110000e-23 122.0
53 TraesCS4B01G183800 chr1D 83.673 98 13 3 307 402 488094135 488094039 1.120000e-13 89.8
54 TraesCS4B01G183800 chr6D 89.706 68 4 3 1412 1477 437776474 437776540 5.220000e-12 84.2
55 TraesCS4B01G183800 chr6A 88.889 63 6 1 1417 1478 604384209 604384147 8.740000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G183800 chr4B 403048861 403056978 8117 True 7253.500000 13967 100.000000 1 8118 2 chr4B.!!$R3 8117
1 TraesCS4B01G183800 chr4B 403035119 403036478 1359 True 452.000000 490 80.220000 740 7162 2 chr4B.!!$R2 6422
2 TraesCS4B01G183800 chr7B 113136922 113144702 7780 True 3116.000000 5323 96.965250 1 8118 4 chr7B.!!$R3 8117
3 TraesCS4B01G183800 chr7B 113131117 113132476 1359 True 449.500000 468 80.100500 740 7162 2 chr7B.!!$R2 6422
4 TraesCS4B01G183800 chr7A 150901877 150911286 9409 True 1617.200000 4250 90.179600 488 7492 5 chr7A.!!$R2 7004
5 TraesCS4B01G183800 chr7D 151017603 151024952 7349 True 1301.857143 2410 92.157286 671 8078 7 chr7D.!!$R6 7407
6 TraesCS4B01G183800 chr7D 151013000 151013600 600 True 551.000000 551 83.225000 6588 7200 1 chr7D.!!$R1 612
7 TraesCS4B01G183800 chr3D 150866047 150867838 1791 False 455.000000 455 72.044000 3434 5211 1 chr3D.!!$F1 1777
8 TraesCS4B01G183800 chr2B 485328136 485329252 1116 True 305.000000 305 72.359000 3433 4530 1 chr2B.!!$R2 1097
9 TraesCS4B01G183800 chr5A 624220577 624222345 1768 False 237.000000 237 69.873000 3425 5182 1 chr5A.!!$F1 1757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 1.179814 TTTGCGGGCCACGGTAAAAT 61.180 50.000 4.39 0.00 44.51 1.82 F
671 683 1.916651 CATCGACTGAGCTCGAAAGTG 59.083 52.381 9.74 0.82 45.44 3.16 F
1084 1137 1.218196 AGGACGGGATGGATACTGAGT 59.782 52.381 0.00 0.00 37.61 3.41 F
1900 2432 0.242017 GAATGCAAAAGCCTCGCAGT 59.758 50.000 0.00 0.00 39.39 4.40 F
2706 3242 0.320073 CCCTCCACGTGCGTTCTTTA 60.320 55.000 10.91 0.00 0.00 1.85 F
2707 3243 1.504359 CCTCCACGTGCGTTCTTTAA 58.496 50.000 10.91 0.00 0.00 1.52 F
2863 3403 1.517832 CACCCCCTACGAAGCAGAG 59.482 63.158 0.00 0.00 0.00 3.35 F
3795 4372 2.357777 GGGGCAGCCCTAAATACTTCAA 60.358 50.000 30.52 0.00 44.66 2.69 F
5067 5705 2.305635 TCTAGCTCCATTTGTTCCTGCA 59.694 45.455 0.00 0.00 0.00 4.41 F
5849 6502 0.034477 ATTTCCCCCTGGCAAGTACG 60.034 55.000 0.00 0.00 0.00 3.67 F
6435 7263 0.788391 CTAACCGTGGCTTCAACGTC 59.212 55.000 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1133 0.041238 AATCCCTCCACTCCGACTCA 59.959 55.000 0.00 0.00 0.00 3.41 R
1734 2205 0.960861 ACTGGACGACGCAGAGATCA 60.961 55.000 9.12 0.00 0.00 2.92 R
2687 3223 0.320073 TAAAGAACGCACGTGGAGGG 60.320 55.000 18.88 1.91 0.00 4.30 R
3839 4424 2.205342 TGGGGAGGCTGCTAATAAAGT 58.795 47.619 5.84 0.00 0.00 2.66 R
3987 4578 3.705604 ACAAAGGAACAAACATGCTTCG 58.294 40.909 0.00 0.00 0.00 3.79 R
4337 4970 4.751600 TGCATGAGGCTTTGAATAGTATCG 59.248 41.667 0.00 0.00 45.15 2.92 R
4501 5136 7.120432 GGCTAATCAGATTCAAAAGTTCAGACT 59.880 37.037 0.00 0.00 37.87 3.24 R
5692 6334 4.883585 CCTGGTGTTGATATATGCACAACT 59.116 41.667 15.55 0.00 42.60 3.16 R
6407 7235 0.683504 GCCACGGTTAGGGAGAGAGA 60.684 60.000 0.00 0.00 0.00 3.10 R
6826 7714 0.744414 GCAACTCCGGCATCTTAGCA 60.744 55.000 0.00 0.00 35.83 3.49 R
7492 10973 6.263617 ACATTTCTTTTAGAAGCACCGGTAAA 59.736 34.615 6.87 0.00 35.37 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.802667 CGGCGGCGAGAAATGTGAG 61.803 63.158 29.19 0.00 0.00 3.51
73 74 2.409870 GGAGTGGGGAATTGCAGCG 61.410 63.158 0.00 0.00 0.00 5.18
144 145 3.489180 CCGTAGATATACTGCTTCGGG 57.511 52.381 0.00 0.00 34.24 5.14
177 178 1.179814 TTTGCGGGCCACGGTAAAAT 61.180 50.000 4.39 0.00 44.51 1.82
192 193 3.004629 GGTAAAATAAATTACGGGCCGGG 59.995 47.826 31.78 3.37 36.78 5.73
202 203 3.228759 GGGCCGGGCGAGTATACA 61.229 66.667 23.19 0.00 0.00 2.29
203 204 2.338984 GGCCGGGCGAGTATACAG 59.661 66.667 14.21 0.00 0.00 2.74
217 218 5.622460 CGAGTATACAGACTTTGTTCTGGCT 60.622 44.000 5.50 0.00 46.38 4.75
227 228 6.772716 AGACTTTGTTCTGGCTAGAAAATTGA 59.227 34.615 14.73 0.00 44.12 2.57
275 276 7.886629 ATTTTGCAGGTTCATGACATATACT 57.113 32.000 0.00 0.00 0.00 2.12
304 306 5.221382 TGCTAGAGTTGTTCTTAGGACGTTT 60.221 40.000 0.00 0.00 37.36 3.60
312 314 3.855689 TCTTAGGACGTTTAAGGACGG 57.144 47.619 16.17 0.00 46.77 4.79
323 325 2.791501 TAAGGACGGTTTGAGGCGCC 62.792 60.000 21.89 21.89 0.00 6.53
333 335 3.706373 GAGGCGCCCAGTTGGAGA 61.706 66.667 26.15 0.00 35.62 3.71
417 420 3.544684 TGCTCTAATGCCCATACAACTG 58.455 45.455 0.00 0.00 0.00 3.16
436 439 3.186909 CTGTTCGAAATATGAGCGTGGA 58.813 45.455 0.00 0.00 0.00 4.02
449 452 9.787435 AATATGAGCGTGGAAAATATAACCTTA 57.213 29.630 0.00 0.00 0.00 2.69
560 563 5.756347 ACCCGCCAAAAAGAAAAGAAAATAC 59.244 36.000 0.00 0.00 0.00 1.89
671 683 1.916651 CATCGACTGAGCTCGAAAGTG 59.083 52.381 9.74 0.82 45.44 3.16
808 837 5.596772 TGTTTCTTTACCCAAAGGAAAGAGG 59.403 40.000 0.73 0.00 40.26 3.69
813 842 8.222138 TCTTTACCCAAAGGAAAGAGGTAATA 57.778 34.615 0.00 0.00 41.43 0.98
898 930 4.489771 CGGCCTCCAATTCCGGCT 62.490 66.667 0.00 0.00 43.29 5.52
969 1016 5.429130 CTCCCTCCTGTATAAACAAGAACC 58.571 45.833 0.00 0.00 34.49 3.62
973 1020 4.571919 TCCTGTATAAACAAGAACCGTGG 58.428 43.478 0.00 0.00 34.49 4.94
1080 1133 3.149436 CCAGGACGGGATGGATACT 57.851 57.895 0.00 0.00 39.02 2.12
1084 1137 1.218196 AGGACGGGATGGATACTGAGT 59.782 52.381 0.00 0.00 37.61 3.41
1177 1239 3.721172 ATCCTCATGGGGCCCGACT 62.721 63.158 19.83 1.47 35.33 4.18
1518 1986 1.819632 CAAGTCCCGGCCAGCATAC 60.820 63.158 2.24 0.00 0.00 2.39
1734 2205 3.511477 ACCAGATACCAGTGTCTCACTT 58.489 45.455 0.00 0.00 42.59 3.16
1826 2358 1.123077 TCTGAGGATTAGCATGCCGT 58.877 50.000 15.66 0.00 0.00 5.68
1900 2432 0.242017 GAATGCAAAAGCCTCGCAGT 59.758 50.000 0.00 0.00 39.39 4.40
1926 2458 8.573885 TCTCAGACGAGTTCAAAACTAAGATTA 58.426 33.333 0.00 0.00 43.03 1.75
1960 2492 4.000331 ACAAACACTGATCTGAGAGGTG 58.000 45.455 6.60 10.09 0.00 4.00
2042 2574 4.940463 ACGAACAGTGCTACTAGAACAAA 58.060 39.130 0.00 0.00 0.00 2.83
2071 2603 1.149101 AGAAACAAAGGCCAGGGAGA 58.851 50.000 5.01 0.00 0.00 3.71
2335 2867 9.096160 CATGGATCAGATATCCTTTTCTTATCG 57.904 37.037 0.00 0.00 38.95 2.92
2462 2998 1.202758 ACAAATCCCGAGTGCTGTCAA 60.203 47.619 0.00 0.00 0.00 3.18
2501 3037 7.807977 TCAAAAGCATATTGAATACTCCCTC 57.192 36.000 0.00 0.00 34.04 4.30
2502 3038 6.772716 TCAAAAGCATATTGAATACTCCCTCC 59.227 38.462 0.00 0.00 34.04 4.30
2503 3039 4.543590 AGCATATTGAATACTCCCTCCG 57.456 45.455 0.00 0.00 0.00 4.63
2504 3040 3.904339 AGCATATTGAATACTCCCTCCGT 59.096 43.478 0.00 0.00 0.00 4.69
2505 3041 4.348168 AGCATATTGAATACTCCCTCCGTT 59.652 41.667 0.00 0.00 0.00 4.44
2506 3042 4.691216 GCATATTGAATACTCCCTCCGTTC 59.309 45.833 0.00 0.00 0.00 3.95
2507 3043 3.840124 ATTGAATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
2508 3044 2.544844 TGAATACTCCCTCCGTTCCT 57.455 50.000 0.00 0.00 0.00 3.36
2509 3045 2.829023 TGAATACTCCCTCCGTTCCTT 58.171 47.619 0.00 0.00 0.00 3.36
2510 3046 2.500098 TGAATACTCCCTCCGTTCCTTG 59.500 50.000 0.00 0.00 0.00 3.61
2511 3047 2.544844 ATACTCCCTCCGTTCCTTGA 57.455 50.000 0.00 0.00 0.00 3.02
2512 3048 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
2513 3049 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
2514 3050 3.047695 ACTCCCTCCGTTCCTTGATAT 57.952 47.619 0.00 0.00 0.00 1.63
2515 3051 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
2516 3052 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
2517 3053 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
2518 3054 3.901844 TCCCTCCGTTCCTTGATATAAGG 59.098 47.826 0.00 0.00 38.78 2.69
2519 3055 3.646637 CCCTCCGTTCCTTGATATAAGGT 59.353 47.826 5.67 0.00 38.55 3.50
2520 3056 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
2521 3057 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
2522 3058 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
2523 3059 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
2524 3060 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
2525 3061 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
2526 3062 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
2527 3063 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
2563 3099 4.647611 CCCGAAATATAGGGTGTATTGCA 58.352 43.478 3.36 0.00 42.67 4.08
2564 3100 5.253330 CCCGAAATATAGGGTGTATTGCAT 58.747 41.667 0.00 0.00 42.67 3.96
2565 3101 5.710099 CCCGAAATATAGGGTGTATTGCATT 59.290 40.000 0.00 0.00 42.67 3.56
2566 3102 6.349280 CCCGAAATATAGGGTGTATTGCATTG 60.349 42.308 0.00 0.00 42.67 2.82
2567 3103 6.086222 CGAAATATAGGGTGTATTGCATTGC 58.914 40.000 0.46 0.46 0.00 3.56
2568 3104 6.293900 CGAAATATAGGGTGTATTGCATTGCA 60.294 38.462 7.38 7.38 36.47 4.08
2569 3105 5.964958 ATATAGGGTGTATTGCATTGCAC 57.035 39.130 18.06 18.06 38.71 4.57
2574 3110 2.867429 GTGTATTGCATTGCACCACTC 58.133 47.619 11.66 9.11 38.71 3.51
2575 3111 2.228582 GTGTATTGCATTGCACCACTCA 59.771 45.455 11.66 4.20 38.71 3.41
2576 3112 3.090790 TGTATTGCATTGCACCACTCAT 58.909 40.909 11.66 3.64 38.71 2.90
2577 3113 3.510753 TGTATTGCATTGCACCACTCATT 59.489 39.130 11.66 0.00 38.71 2.57
2578 3114 3.688694 ATTGCATTGCACCACTCATTT 57.311 38.095 11.66 0.00 38.71 2.32
2579 3115 2.442212 TGCATTGCACCACTCATTTG 57.558 45.000 7.38 0.00 31.71 2.32
2580 3116 1.001068 TGCATTGCACCACTCATTTGG 59.999 47.619 7.38 0.00 43.04 3.28
2581 3117 1.273048 GCATTGCACCACTCATTTGGA 59.727 47.619 3.15 0.00 39.24 3.53
2582 3118 2.093869 GCATTGCACCACTCATTTGGAT 60.094 45.455 3.15 0.00 39.24 3.41
2583 3119 3.130869 GCATTGCACCACTCATTTGGATA 59.869 43.478 3.15 0.00 39.24 2.59
2584 3120 4.381825 GCATTGCACCACTCATTTGGATAA 60.382 41.667 3.15 0.00 39.24 1.75
2585 3121 5.722263 CATTGCACCACTCATTTGGATAAA 58.278 37.500 0.00 0.00 39.24 1.40
2586 3122 5.999205 TTGCACCACTCATTTGGATAAAT 57.001 34.783 0.00 0.00 39.24 1.40
2587 3123 5.999205 TGCACCACTCATTTGGATAAATT 57.001 34.783 0.00 0.00 39.24 1.82
2588 3124 6.357579 TGCACCACTCATTTGGATAAATTT 57.642 33.333 0.00 0.00 39.24 1.82
2589 3125 6.767456 TGCACCACTCATTTGGATAAATTTT 58.233 32.000 0.00 0.00 39.24 1.82
2590 3126 7.222872 TGCACCACTCATTTGGATAAATTTTT 58.777 30.769 0.00 0.00 39.24 1.94
2591 3127 7.387397 TGCACCACTCATTTGGATAAATTTTTC 59.613 33.333 0.00 0.00 39.24 2.29
2592 3128 7.387397 GCACCACTCATTTGGATAAATTTTTCA 59.613 33.333 10.27 0.00 39.24 2.69
2593 3129 8.928733 CACCACTCATTTGGATAAATTTTTCAG 58.071 33.333 10.27 1.69 39.24 3.02
2594 3130 8.096414 ACCACTCATTTGGATAAATTTTTCAGG 58.904 33.333 10.27 0.00 39.24 3.86
2595 3131 7.550196 CCACTCATTTGGATAAATTTTTCAGGG 59.450 37.037 10.27 0.33 39.24 4.45
2596 3132 8.313292 CACTCATTTGGATAAATTTTTCAGGGA 58.687 33.333 10.27 1.18 34.34 4.20
2597 3133 9.050154 ACTCATTTGGATAAATTTTTCAGGGAT 57.950 29.630 10.27 0.00 34.34 3.85
2598 3134 9.895138 CTCATTTGGATAAATTTTTCAGGGATT 57.105 29.630 10.27 0.00 34.34 3.01
2611 3147 9.671279 ATTTTTCAGGGATTTGATTACATTTCC 57.329 29.630 0.00 0.00 0.00 3.13
2612 3148 8.434589 TTTTCAGGGATTTGATTACATTTCCT 57.565 30.769 0.00 0.00 31.95 3.36
2613 3149 8.434589 TTTCAGGGATTTGATTACATTTCCTT 57.565 30.769 0.00 0.00 31.95 3.36
2614 3150 9.540538 TTTCAGGGATTTGATTACATTTCCTTA 57.459 29.630 0.00 0.00 31.95 2.69
2615 3151 9.713684 TTCAGGGATTTGATTACATTTCCTTAT 57.286 29.630 0.00 0.00 31.95 1.73
2616 3152 9.135189 TCAGGGATTTGATTACATTTCCTTATG 57.865 33.333 0.00 0.00 31.95 1.90
2617 3153 8.917088 CAGGGATTTGATTACATTTCCTTATGT 58.083 33.333 0.00 0.00 41.43 2.29
2618 3154 9.492730 AGGGATTTGATTACATTTCCTTATGTT 57.507 29.630 0.00 0.00 39.39 2.71
2623 3159 8.815565 TTGATTACATTTCCTTATGTTAGGCA 57.184 30.769 0.00 0.00 39.39 4.75
2624 3160 8.450578 TGATTACATTTCCTTATGTTAGGCAG 57.549 34.615 0.00 0.00 39.39 4.85
2625 3161 8.052748 TGATTACATTTCCTTATGTTAGGCAGT 58.947 33.333 0.00 0.00 39.39 4.40
2626 3162 7.859325 TTACATTTCCTTATGTTAGGCAGTC 57.141 36.000 0.00 0.00 39.39 3.51
2627 3163 6.067217 ACATTTCCTTATGTTAGGCAGTCT 57.933 37.500 0.00 0.00 35.24 3.24
2628 3164 6.116126 ACATTTCCTTATGTTAGGCAGTCTC 58.884 40.000 0.00 0.00 35.24 3.36
2629 3165 4.755266 TTCCTTATGTTAGGCAGTCTCC 57.245 45.455 0.00 0.00 35.15 3.71
2630 3166 3.995636 TCCTTATGTTAGGCAGTCTCCT 58.004 45.455 0.00 0.00 40.21 3.69
2631 3167 3.961408 TCCTTATGTTAGGCAGTCTCCTC 59.039 47.826 0.00 0.00 37.66 3.71
2632 3168 3.964031 CCTTATGTTAGGCAGTCTCCTCT 59.036 47.826 0.00 0.00 37.66 3.69
2633 3169 5.103643 TCCTTATGTTAGGCAGTCTCCTCTA 60.104 44.000 0.00 0.00 37.66 2.43
2634 3170 5.777732 CCTTATGTTAGGCAGTCTCCTCTAT 59.222 44.000 0.00 0.00 37.66 1.98
2635 3171 6.268847 CCTTATGTTAGGCAGTCTCCTCTATT 59.731 42.308 0.00 0.00 37.66 1.73
2636 3172 7.202047 CCTTATGTTAGGCAGTCTCCTCTATTT 60.202 40.741 0.00 0.00 37.66 1.40
2637 3173 6.567602 ATGTTAGGCAGTCTCCTCTATTTT 57.432 37.500 0.00 0.00 37.66 1.82
2638 3174 5.978814 TGTTAGGCAGTCTCCTCTATTTTC 58.021 41.667 0.00 0.00 37.66 2.29
2639 3175 5.721960 TGTTAGGCAGTCTCCTCTATTTTCT 59.278 40.000 0.00 0.00 37.66 2.52
2640 3176 6.127310 TGTTAGGCAGTCTCCTCTATTTTCTC 60.127 42.308 0.00 0.00 37.66 2.87
2641 3177 4.357325 AGGCAGTCTCCTCTATTTTCTCA 58.643 43.478 0.00 0.00 0.00 3.27
2642 3178 4.968080 AGGCAGTCTCCTCTATTTTCTCAT 59.032 41.667 0.00 0.00 0.00 2.90
2643 3179 5.055812 GGCAGTCTCCTCTATTTTCTCATG 58.944 45.833 0.00 0.00 0.00 3.07
2644 3180 4.511082 GCAGTCTCCTCTATTTTCTCATGC 59.489 45.833 0.00 0.00 0.00 4.06
2645 3181 5.055812 CAGTCTCCTCTATTTTCTCATGCC 58.944 45.833 0.00 0.00 0.00 4.40
2646 3182 4.718774 AGTCTCCTCTATTTTCTCATGCCA 59.281 41.667 0.00 0.00 0.00 4.92
2647 3183 5.190528 AGTCTCCTCTATTTTCTCATGCCAA 59.809 40.000 0.00 0.00 0.00 4.52
2648 3184 6.060788 GTCTCCTCTATTTTCTCATGCCAAT 58.939 40.000 0.00 0.00 0.00 3.16
2649 3185 6.545298 GTCTCCTCTATTTTCTCATGCCAATT 59.455 38.462 0.00 0.00 0.00 2.32
2650 3186 7.716998 GTCTCCTCTATTTTCTCATGCCAATTA 59.283 37.037 0.00 0.00 0.00 1.40
2651 3187 7.935755 TCTCCTCTATTTTCTCATGCCAATTAG 59.064 37.037 0.00 0.00 0.00 1.73
2652 3188 7.577303 TCCTCTATTTTCTCATGCCAATTAGT 58.423 34.615 0.00 0.00 0.00 2.24
2653 3189 7.716998 TCCTCTATTTTCTCATGCCAATTAGTC 59.283 37.037 0.00 0.00 0.00 2.59
2654 3190 7.500227 CCTCTATTTTCTCATGCCAATTAGTCA 59.500 37.037 0.00 0.00 0.00 3.41
2655 3191 8.442632 TCTATTTTCTCATGCCAATTAGTCAG 57.557 34.615 0.00 0.00 0.00 3.51
2656 3192 5.902613 TTTTCTCATGCCAATTAGTCAGG 57.097 39.130 0.00 0.00 0.00 3.86
2657 3193 4.574674 TTCTCATGCCAATTAGTCAGGT 57.425 40.909 0.00 0.00 0.00 4.00
2658 3194 3.877559 TCTCATGCCAATTAGTCAGGTG 58.122 45.455 0.00 0.00 0.00 4.00
2659 3195 3.264193 TCTCATGCCAATTAGTCAGGTGT 59.736 43.478 0.00 0.00 0.00 4.16
2660 3196 4.469586 TCTCATGCCAATTAGTCAGGTGTA 59.530 41.667 0.00 0.00 0.00 2.90
2661 3197 5.045942 TCTCATGCCAATTAGTCAGGTGTAA 60.046 40.000 0.00 0.00 0.00 2.41
2662 3198 5.754782 TCATGCCAATTAGTCAGGTGTAAT 58.245 37.500 0.00 0.00 0.00 1.89
2663 3199 6.894682 TCATGCCAATTAGTCAGGTGTAATA 58.105 36.000 0.00 0.00 0.00 0.98
2664 3200 7.517320 TCATGCCAATTAGTCAGGTGTAATAT 58.483 34.615 0.00 0.00 0.00 1.28
2665 3201 7.661437 TCATGCCAATTAGTCAGGTGTAATATC 59.339 37.037 0.00 0.00 0.00 1.63
2666 3202 5.989168 TGCCAATTAGTCAGGTGTAATATCG 59.011 40.000 0.00 0.00 0.00 2.92
2667 3203 5.107065 GCCAATTAGTCAGGTGTAATATCGC 60.107 44.000 0.00 0.00 0.00 4.58
2668 3204 5.408604 CCAATTAGTCAGGTGTAATATCGCC 59.591 44.000 0.00 0.00 38.17 5.54
2669 3205 4.595762 TTAGTCAGGTGTAATATCGCCC 57.404 45.455 0.00 0.00 38.61 6.13
2670 3206 2.394632 AGTCAGGTGTAATATCGCCCA 58.605 47.619 0.00 0.00 38.61 5.36
2671 3207 2.769663 AGTCAGGTGTAATATCGCCCAA 59.230 45.455 0.00 0.00 38.61 4.12
2672 3208 3.199071 AGTCAGGTGTAATATCGCCCAAA 59.801 43.478 0.00 0.00 38.61 3.28
2673 3209 3.942748 GTCAGGTGTAATATCGCCCAAAA 59.057 43.478 0.00 0.00 38.61 2.44
2674 3210 3.942748 TCAGGTGTAATATCGCCCAAAAC 59.057 43.478 0.00 0.00 38.61 2.43
2675 3211 3.945285 CAGGTGTAATATCGCCCAAAACT 59.055 43.478 0.00 0.00 38.61 2.66
2676 3212 4.398044 CAGGTGTAATATCGCCCAAAACTT 59.602 41.667 0.00 0.00 38.61 2.66
2677 3213 4.398044 AGGTGTAATATCGCCCAAAACTTG 59.602 41.667 0.00 0.00 38.61 3.16
2678 3214 4.157105 GGTGTAATATCGCCCAAAACTTGT 59.843 41.667 0.00 0.00 32.43 3.16
2679 3215 5.092781 GTGTAATATCGCCCAAAACTTGTG 58.907 41.667 0.00 0.00 0.00 3.33
2680 3216 5.004448 TGTAATATCGCCCAAAACTTGTGA 58.996 37.500 0.00 0.00 0.00 3.58
2681 3217 5.473846 TGTAATATCGCCCAAAACTTGTGAA 59.526 36.000 0.00 0.00 0.00 3.18
2682 3218 5.461032 AATATCGCCCAAAACTTGTGAAA 57.539 34.783 0.00 0.00 0.00 2.69
2683 3219 5.659440 ATATCGCCCAAAACTTGTGAAAT 57.341 34.783 0.00 0.00 0.00 2.17
2684 3220 3.810310 TCGCCCAAAACTTGTGAAATT 57.190 38.095 0.00 0.00 0.00 1.82
2685 3221 4.130286 TCGCCCAAAACTTGTGAAATTT 57.870 36.364 0.00 0.00 0.00 1.82
2686 3222 4.508662 TCGCCCAAAACTTGTGAAATTTT 58.491 34.783 0.00 0.00 0.00 1.82
2687 3223 4.568760 TCGCCCAAAACTTGTGAAATTTTC 59.431 37.500 2.05 2.05 0.00 2.29
2688 3224 4.260579 CGCCCAAAACTTGTGAAATTTTCC 60.261 41.667 6.68 0.00 0.00 3.13
2689 3225 4.036262 GCCCAAAACTTGTGAAATTTTCCC 59.964 41.667 6.68 0.00 0.00 3.97
2690 3226 5.436175 CCCAAAACTTGTGAAATTTTCCCT 58.564 37.500 6.68 0.00 0.00 4.20
2691 3227 5.527214 CCCAAAACTTGTGAAATTTTCCCTC 59.473 40.000 6.68 0.00 0.00 4.30
2692 3228 5.527214 CCAAAACTTGTGAAATTTTCCCTCC 59.473 40.000 6.68 0.00 0.00 4.30
2693 3229 5.948742 AAACTTGTGAAATTTTCCCTCCA 57.051 34.783 6.68 0.00 0.00 3.86
2694 3230 4.937201 ACTTGTGAAATTTTCCCTCCAC 57.063 40.909 6.68 0.00 0.00 4.02
2695 3231 3.317993 ACTTGTGAAATTTTCCCTCCACG 59.682 43.478 6.68 0.00 0.00 4.94
2696 3232 2.938838 TGTGAAATTTTCCCTCCACGT 58.061 42.857 6.68 0.00 0.00 4.49
2697 3233 2.621055 TGTGAAATTTTCCCTCCACGTG 59.379 45.455 9.08 9.08 0.00 4.49
2698 3234 1.611491 TGAAATTTTCCCTCCACGTGC 59.389 47.619 10.91 0.00 0.00 5.34
2699 3235 0.596082 AAATTTTCCCTCCACGTGCG 59.404 50.000 10.91 3.66 0.00 5.34
2700 3236 0.536460 AATTTTCCCTCCACGTGCGT 60.536 50.000 10.91 0.00 0.00 5.24
2701 3237 0.536460 ATTTTCCCTCCACGTGCGTT 60.536 50.000 10.91 0.00 0.00 4.84
2702 3238 1.161563 TTTTCCCTCCACGTGCGTTC 61.162 55.000 10.91 0.00 0.00 3.95
2703 3239 2.035237 TTTCCCTCCACGTGCGTTCT 62.035 55.000 10.91 0.00 0.00 3.01
2704 3240 2.030562 CCCTCCACGTGCGTTCTT 59.969 61.111 10.91 0.00 0.00 2.52
2705 3241 1.597027 CCCTCCACGTGCGTTCTTT 60.597 57.895 10.91 0.00 0.00 2.52
2706 3242 0.320073 CCCTCCACGTGCGTTCTTTA 60.320 55.000 10.91 0.00 0.00 1.85
2707 3243 1.504359 CCTCCACGTGCGTTCTTTAA 58.496 50.000 10.91 0.00 0.00 1.52
2708 3244 2.073816 CCTCCACGTGCGTTCTTTAAT 58.926 47.619 10.91 0.00 0.00 1.40
2709 3245 2.482721 CCTCCACGTGCGTTCTTTAATT 59.517 45.455 10.91 0.00 0.00 1.40
2710 3246 3.058501 CCTCCACGTGCGTTCTTTAATTT 60.059 43.478 10.91 0.00 0.00 1.82
2711 3247 4.136517 TCCACGTGCGTTCTTTAATTTC 57.863 40.909 10.91 0.00 0.00 2.17
2712 3248 3.058777 TCCACGTGCGTTCTTTAATTTCC 60.059 43.478 10.91 0.00 0.00 3.13
2713 3249 2.900046 CACGTGCGTTCTTTAATTTCCG 59.100 45.455 0.82 0.00 0.00 4.30
2714 3250 2.545106 ACGTGCGTTCTTTAATTTCCGT 59.455 40.909 0.00 0.00 0.00 4.69
2715 3251 2.900046 CGTGCGTTCTTTAATTTCCGTG 59.100 45.455 0.00 0.00 0.00 4.94
2716 3252 2.655001 GTGCGTTCTTTAATTTCCGTGC 59.345 45.455 0.00 0.00 0.00 5.34
2717 3253 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
2718 3254 2.501881 CGTTCTTTAATTTCCGTGCCG 58.498 47.619 0.00 0.00 0.00 5.69
2719 3255 2.158058 CGTTCTTTAATTTCCGTGCCGA 59.842 45.455 0.00 0.00 0.00 5.54
2720 3256 3.364167 CGTTCTTTAATTTCCGTGCCGAA 60.364 43.478 0.00 0.00 0.00 4.30
2721 3257 4.538917 GTTCTTTAATTTCCGTGCCGAAA 58.461 39.130 0.00 0.00 36.24 3.46
2722 3258 4.832590 TCTTTAATTTCCGTGCCGAAAA 57.167 36.364 0.00 0.00 35.47 2.29
2723 3259 4.538917 TCTTTAATTTCCGTGCCGAAAAC 58.461 39.130 0.00 0.00 35.47 2.43
2724 3260 4.276431 TCTTTAATTTCCGTGCCGAAAACT 59.724 37.500 0.00 0.00 35.47 2.66
2725 3261 5.469421 TCTTTAATTTCCGTGCCGAAAACTA 59.531 36.000 0.00 0.00 35.47 2.24
2726 3262 5.883503 TTAATTTCCGTGCCGAAAACTAT 57.116 34.783 0.00 0.00 35.47 2.12
2727 3263 6.981762 TTAATTTCCGTGCCGAAAACTATA 57.018 33.333 0.00 0.00 35.47 1.31
2728 3264 4.870221 ATTTCCGTGCCGAAAACTATAC 57.130 40.909 0.00 0.00 35.47 1.47
2729 3265 3.316071 TTCCGTGCCGAAAACTATACA 57.684 42.857 0.00 0.00 0.00 2.29
2730 3266 2.609350 TCCGTGCCGAAAACTATACAC 58.391 47.619 0.00 0.00 0.00 2.90
2731 3267 1.662122 CCGTGCCGAAAACTATACACC 59.338 52.381 0.00 0.00 0.00 4.16
2732 3268 1.662122 CGTGCCGAAAACTATACACCC 59.338 52.381 0.00 0.00 0.00 4.61
2733 3269 2.675889 CGTGCCGAAAACTATACACCCT 60.676 50.000 0.00 0.00 0.00 4.34
2734 3270 3.429272 CGTGCCGAAAACTATACACCCTA 60.429 47.826 0.00 0.00 0.00 3.53
2735 3271 4.700700 GTGCCGAAAACTATACACCCTAT 58.299 43.478 0.00 0.00 0.00 2.57
2736 3272 5.507817 CGTGCCGAAAACTATACACCCTATA 60.508 44.000 0.00 0.00 0.00 1.31
2737 3273 6.461640 GTGCCGAAAACTATACACCCTATAT 58.538 40.000 0.00 0.00 0.00 0.86
2738 3274 6.932960 GTGCCGAAAACTATACACCCTATATT 59.067 38.462 0.00 0.00 0.00 1.28
2739 3275 6.932400 TGCCGAAAACTATACACCCTATATTG 59.068 38.462 0.00 0.00 0.00 1.90
2740 3276 7.156673 GCCGAAAACTATACACCCTATATTGA 58.843 38.462 0.00 0.00 0.00 2.57
2741 3277 7.331193 GCCGAAAACTATACACCCTATATTGAG 59.669 40.741 0.00 0.00 0.00 3.02
2742 3278 7.817962 CCGAAAACTATACACCCTATATTGAGG 59.182 40.741 0.00 0.00 36.23 3.86
2743 3279 8.582437 CGAAAACTATACACCCTATATTGAGGA 58.418 37.037 0.00 0.00 39.15 3.71
2747 3283 8.380742 ACTATACACCCTATATTGAGGAATGG 57.619 38.462 0.00 0.00 39.15 3.16
2748 3284 8.184249 ACTATACACCCTATATTGAGGAATGGA 58.816 37.037 0.00 0.00 39.15 3.41
2749 3285 5.832539 ACACCCTATATTGAGGAATGGAG 57.167 43.478 0.00 0.00 39.15 3.86
2750 3286 4.599241 ACACCCTATATTGAGGAATGGAGG 59.401 45.833 0.00 0.00 39.15 4.30
2751 3287 4.018960 CACCCTATATTGAGGAATGGAGGG 60.019 50.000 11.56 11.56 43.97 4.30
2752 3288 4.140204 ACCCTATATTGAGGAATGGAGGGA 60.140 45.833 16.86 0.00 42.49 4.20
2753 3289 4.472833 CCCTATATTGAGGAATGGAGGGAG 59.527 50.000 8.96 0.00 42.49 4.30
2754 3290 5.097234 CCTATATTGAGGAATGGAGGGAGT 58.903 45.833 0.00 0.00 39.15 3.85
2755 3291 6.264528 CCTATATTGAGGAATGGAGGGAGTA 58.735 44.000 0.00 0.00 39.15 2.59
2769 3305 8.742125 ATGGAGGGAGTAATATTCTACATCAA 57.258 34.615 11.39 3.91 29.37 2.57
2804 3340 7.173218 TGGAACATTTCAAGTCTTATCTCACAC 59.827 37.037 0.00 0.00 0.00 3.82
2807 3343 6.998074 ACATTTCAAGTCTTATCTCACACCAA 59.002 34.615 0.00 0.00 0.00 3.67
2808 3344 6.861065 TTTCAAGTCTTATCTCACACCAAC 57.139 37.500 0.00 0.00 0.00 3.77
2810 3346 4.346709 TCAAGTCTTATCTCACACCAACCA 59.653 41.667 0.00 0.00 0.00 3.67
2811 3347 4.974645 AGTCTTATCTCACACCAACCAA 57.025 40.909 0.00 0.00 0.00 3.67
2814 3350 5.940470 AGTCTTATCTCACACCAACCAAATC 59.060 40.000 0.00 0.00 0.00 2.17
2815 3351 5.123979 GTCTTATCTCACACCAACCAAATCC 59.876 44.000 0.00 0.00 0.00 3.01
2863 3403 1.517832 CACCCCCTACGAAGCAGAG 59.482 63.158 0.00 0.00 0.00 3.35
2880 3420 7.760340 CGAAGCAGAGTACCTCTAGTTAAAATT 59.240 37.037 0.00 0.00 38.99 1.82
2909 3449 4.339814 ACGCAAGACCAACCAAATAAAGAA 59.660 37.500 0.00 0.00 43.62 2.52
2913 3453 7.042119 CGCAAGACCAACCAAATAAAGAATTTT 60.042 33.333 0.00 0.00 38.83 1.82
2914 3454 8.620416 GCAAGACCAACCAAATAAAGAATTTTT 58.380 29.630 0.00 0.00 40.09 1.94
3225 3768 4.096081 GGGAAGTCATCTTTCAATGCTCTG 59.904 45.833 0.00 0.00 33.64 3.35
3636 4207 4.420214 AGGGAGCCCATAAAAGGACATTAT 59.580 41.667 8.53 0.00 38.92 1.28
3707 4278 6.360370 AGCTAATAATCTTCCCTGCGAATA 57.640 37.500 0.00 0.00 0.00 1.75
3795 4372 2.357777 GGGGCAGCCCTAAATACTTCAA 60.358 50.000 30.52 0.00 44.66 2.69
3826 4404 7.208064 ACTTCCTATAGGGCAAGTAATTTGA 57.792 36.000 19.47 0.00 38.57 2.69
3828 4406 5.621193 TCCTATAGGGCAAGTAATTTGAGC 58.379 41.667 18.97 0.00 38.57 4.26
3839 4424 7.171337 GGCAAGTAATTTGAGCAAATTCAGAAA 59.829 33.333 20.71 4.68 44.98 2.52
4329 4958 6.367422 CCTTAAAGAGCAGAACACTCTACTTG 59.633 42.308 0.00 0.00 43.71 3.16
4337 4970 7.093992 AGCAGAACACTCTACTTGTTTCTATC 58.906 38.462 0.00 0.00 37.31 2.08
4396 5031 6.448387 CCCTTCCATAATGTATCTCCCCTTAT 59.552 42.308 0.00 0.00 0.00 1.73
4436 5071 8.742125 ATAGGGGATATGACTTCATTAGACAA 57.258 34.615 0.00 0.00 37.76 3.18
4897 5533 5.221621 CCCTCTATCTTTCCTTCATCCTGAC 60.222 48.000 0.00 0.00 0.00 3.51
5025 5661 4.946646 TCCATTTTGCCTCCTCCTATTTT 58.053 39.130 0.00 0.00 0.00 1.82
5026 5662 4.711355 TCCATTTTGCCTCCTCCTATTTTG 59.289 41.667 0.00 0.00 0.00 2.44
5067 5705 2.305635 TCTAGCTCCATTTGTTCCTGCA 59.694 45.455 0.00 0.00 0.00 4.41
5365 6005 3.458118 TGTATCCATAAACAGGGGAGTGG 59.542 47.826 0.00 0.00 33.47 4.00
5492 6133 7.681598 AGGTAGGTTATTACCCCAGGTATATTC 59.318 40.741 0.00 0.00 46.28 1.75
5573 6214 6.126409 TGAAACTCCAATGTCCAGTAGTTTT 58.874 36.000 0.00 0.00 37.31 2.43
5692 6334 7.203255 GCTAAAAACCTAGCTTTTCTCTCAA 57.797 36.000 0.00 0.00 41.01 3.02
5743 6391 8.585018 CCCATATAAACCTGATTTTAACATCCC 58.415 37.037 0.00 0.00 0.00 3.85
5827 6478 2.204034 CCCCCAACAAAAGCCCCT 59.796 61.111 0.00 0.00 0.00 4.79
5849 6502 0.034477 ATTTCCCCCTGGCAAGTACG 60.034 55.000 0.00 0.00 0.00 3.67
5971 6624 3.589951 ATCCATCACCATTTCCCTCAG 57.410 47.619 0.00 0.00 0.00 3.35
6029 6855 8.990163 TTAATACCAATGGTAGATTTTCCTCC 57.010 34.615 17.87 0.00 41.83 4.30
6031 6857 5.269554 ACCAATGGTAGATTTTCCTCCAA 57.730 39.130 1.52 0.00 32.11 3.53
6046 6872 5.333566 TCCTCCAAAATTCTGGTAGGTTT 57.666 39.130 13.03 0.00 37.74 3.27
6052 6878 5.696270 CCAAAATTCTGGTAGGTTTTGCTTC 59.304 40.000 0.00 0.00 39.17 3.86
6066 6892 5.278512 GGTTTTGCTTCTACTCTTCCCTTTG 60.279 44.000 0.00 0.00 0.00 2.77
6096 6922 9.283768 TGTGAGAAAAGATGTTTAGCTTATTGA 57.716 29.630 0.00 0.00 31.11 2.57
6204 7031 1.343465 GGACCTCCTCTTCAACGTGAA 59.657 52.381 0.00 0.00 34.79 3.18
6400 7228 8.206126 TGATGGACTCAGCATATTAATCCTTA 57.794 34.615 0.00 0.00 33.99 2.69
6407 7235 8.820831 ACTCAGCATATTAATCCTTACTAGCAT 58.179 33.333 0.00 0.00 0.00 3.79
6433 7261 1.296056 CCCTAACCGTGGCTTCAACG 61.296 60.000 0.00 0.00 0.00 4.10
6435 7263 0.788391 CTAACCGTGGCTTCAACGTC 59.212 55.000 0.00 0.00 0.00 4.34
6509 7345 3.516615 CTCAAACTCTCCTTTCCTAGCG 58.483 50.000 0.00 0.00 0.00 4.26
7151 8041 1.143183 CCGGTAGAACATCCACCCG 59.857 63.158 0.00 0.00 35.32 5.28
7165 8055 1.339610 CCACCCGACATTTGCTTTGAA 59.660 47.619 0.00 0.00 0.00 2.69
7237 8127 4.749099 GTGCCTCTCATCTGTACATCAATC 59.251 45.833 0.00 0.00 0.00 2.67
7317 8207 1.343789 TGTCGTTGTTCCGGTCCAATA 59.656 47.619 0.00 0.00 0.00 1.90
7318 8208 2.027929 TGTCGTTGTTCCGGTCCAATAT 60.028 45.455 0.00 0.00 0.00 1.28
7465 10946 6.015918 TCATGGATCCAAAACAATGTACCTT 58.984 36.000 20.67 0.00 0.00 3.50
7492 10973 6.864360 TTACAGGTTGCGTGTACTAAAAAT 57.136 33.333 0.00 0.00 35.03 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.615262 CAATTCCCCACTCCCCTCC 59.385 63.158 0.00 0.00 0.00 4.30
144 145 2.356667 CAAACTGCTCCCCTCCCC 59.643 66.667 0.00 0.00 0.00 4.81
148 149 4.351054 CCCGCAAACTGCTCCCCT 62.351 66.667 0.00 0.00 42.25 4.79
156 157 2.962142 TTTACCGTGGCCCGCAAACT 62.962 55.000 0.00 0.00 34.38 2.66
168 169 3.312146 CGGCCCGTAATTTATTTTACCGT 59.688 43.478 0.00 0.00 0.00 4.83
177 178 2.203042 CGCCCGGCCCGTAATTTA 60.203 61.111 0.85 0.00 0.00 1.40
192 193 4.563184 CCAGAACAAAGTCTGTATACTCGC 59.437 45.833 4.17 0.00 43.02 5.03
202 203 6.772716 TCAATTTTCTAGCCAGAACAAAGTCT 59.227 34.615 0.00 0.00 40.54 3.24
203 204 6.970484 TCAATTTTCTAGCCAGAACAAAGTC 58.030 36.000 0.00 0.00 40.54 3.01
237 238 4.209288 CCTGCAAAATTCCGACGAGTATAG 59.791 45.833 0.00 0.00 0.00 1.31
248 249 4.255833 TGTCATGAACCTGCAAAATTCC 57.744 40.909 0.00 0.00 0.00 3.01
275 276 4.220821 CCTAAGAACAACTCTAGCAGACCA 59.779 45.833 0.00 0.00 32.46 4.02
304 306 1.375013 GCGCCTCAAACCGTCCTTA 60.375 57.895 0.00 0.00 0.00 2.69
312 314 2.644992 CAACTGGGCGCCTCAAAC 59.355 61.111 28.56 9.87 0.00 2.93
417 420 4.593597 TTTCCACGCTCATATTTCGAAC 57.406 40.909 0.00 0.00 0.00 3.95
521 524 1.136305 GCGGGTGCAATCTACTACAGA 59.864 52.381 0.00 0.00 42.15 3.41
671 683 3.926616 TCAAGATTCTGGGTTCGTCTTC 58.073 45.455 0.00 0.00 0.00 2.87
808 837 5.128468 CCGAAAGCGACGCTAATTTATTAC 58.872 41.667 24.77 6.03 38.25 1.89
813 842 0.096454 GCCGAAAGCGACGCTAATTT 59.904 50.000 24.77 14.22 38.25 1.82
872 904 2.100879 ATTGGAGGCCGGTATCTCGC 62.101 60.000 1.90 3.72 0.00 5.03
898 930 2.851263 ACTATGTGCCAAACGGAGAA 57.149 45.000 0.00 0.00 0.00 2.87
969 1016 2.432628 GGCGTCAGAGGAACCACG 60.433 66.667 0.00 0.00 35.32 4.94
973 1020 1.153997 GTCTCGGCGTCAGAGGAAC 60.154 63.158 6.85 0.00 36.45 3.62
1080 1133 0.041238 AATCCCTCCACTCCGACTCA 59.959 55.000 0.00 0.00 0.00 3.41
1084 1137 1.689233 CCCAATCCCTCCACTCCGA 60.689 63.158 0.00 0.00 0.00 4.55
1177 1239 2.601067 CCATGGGCTGCACACCAA 60.601 61.111 6.79 0.00 40.73 3.67
1232 1294 3.097877 AGTGAAAGCGCATATCGATGA 57.902 42.857 11.47 0.00 41.67 2.92
1518 1986 2.436646 GGGGTGTGCATCGTCTGG 60.437 66.667 0.00 0.00 0.00 3.86
1734 2205 0.960861 ACTGGACGACGCAGAGATCA 60.961 55.000 9.12 0.00 0.00 2.92
1900 2432 6.387041 TCTTAGTTTTGAACTCGTCTGAGA 57.613 37.500 0.00 0.00 45.57 3.27
1926 2458 7.502561 AGATCAGTGTTTGTTAGGTTAAGCTTT 59.497 33.333 13.21 0.00 0.00 3.51
2042 2574 3.056821 GGCCTTTGTTTCTTCGGCTAAAT 60.057 43.478 0.00 0.00 40.52 1.40
2071 2603 5.261216 TCCCTTTGTTCACTTGTCTTTCTT 58.739 37.500 0.00 0.00 0.00 2.52
2335 2867 7.535997 GGAAACTTGGAAATAGTGTGGTATTC 58.464 38.462 0.00 0.00 0.00 1.75
2495 3031 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
2496 3032 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
2497 3033 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
2498 3034 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
2499 3035 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
2500 3036 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
2501 3037 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
2541 3077 4.647611 TGCAATACACCCTATATTTCGGG 58.352 43.478 0.00 0.00 46.26 5.14
2542 3078 6.611381 CAATGCAATACACCCTATATTTCGG 58.389 40.000 0.00 0.00 0.00 4.30
2543 3079 6.086222 GCAATGCAATACACCCTATATTTCG 58.914 40.000 0.00 0.00 0.00 3.46
2544 3080 6.863126 GTGCAATGCAATACACCCTATATTTC 59.137 38.462 10.44 0.00 41.47 2.17
2545 3081 6.239289 GGTGCAATGCAATACACCCTATATTT 60.239 38.462 10.44 0.00 43.98 1.40
2546 3082 5.243730 GGTGCAATGCAATACACCCTATATT 59.756 40.000 10.44 0.00 43.98 1.28
2547 3083 4.766891 GGTGCAATGCAATACACCCTATAT 59.233 41.667 10.44 0.00 43.98 0.86
2548 3084 4.141287 GGTGCAATGCAATACACCCTATA 58.859 43.478 10.44 0.00 43.98 1.31
2549 3085 2.958355 GGTGCAATGCAATACACCCTAT 59.042 45.455 10.44 0.00 43.98 2.57
2550 3086 2.374184 GGTGCAATGCAATACACCCTA 58.626 47.619 10.44 0.00 43.98 3.53
2551 3087 1.185315 GGTGCAATGCAATACACCCT 58.815 50.000 10.44 0.00 43.98 4.34
2552 3088 3.739077 GGTGCAATGCAATACACCC 57.261 52.632 10.44 1.34 43.98 4.61
2554 3090 2.228582 TGAGTGGTGCAATGCAATACAC 59.771 45.455 22.70 22.70 41.47 2.90
2555 3091 2.512705 TGAGTGGTGCAATGCAATACA 58.487 42.857 10.44 6.97 41.47 2.29
2556 3092 3.788333 ATGAGTGGTGCAATGCAATAC 57.212 42.857 10.44 12.14 41.47 1.89
2557 3093 4.496360 CAAATGAGTGGTGCAATGCAATA 58.504 39.130 10.44 0.00 41.47 1.90
2558 3094 3.331150 CAAATGAGTGGTGCAATGCAAT 58.669 40.909 10.44 0.00 41.47 3.56
2559 3095 2.548280 CCAAATGAGTGGTGCAATGCAA 60.548 45.455 10.44 0.00 41.47 4.08
2560 3096 1.001068 CCAAATGAGTGGTGCAATGCA 59.999 47.619 2.72 2.72 35.60 3.96
2561 3097 1.273048 TCCAAATGAGTGGTGCAATGC 59.727 47.619 0.00 0.00 39.88 3.56
2562 3098 3.880047 ATCCAAATGAGTGGTGCAATG 57.120 42.857 0.00 0.00 39.88 2.82
2563 3099 5.999205 TTTATCCAAATGAGTGGTGCAAT 57.001 34.783 0.00 0.00 39.88 3.56
2564 3100 5.999205 ATTTATCCAAATGAGTGGTGCAA 57.001 34.783 0.00 0.00 39.88 4.08
2565 3101 5.999205 AATTTATCCAAATGAGTGGTGCA 57.001 34.783 0.00 0.00 39.88 4.57
2566 3102 7.387397 TGAAAAATTTATCCAAATGAGTGGTGC 59.613 33.333 0.00 0.00 39.88 5.01
2567 3103 8.830201 TGAAAAATTTATCCAAATGAGTGGTG 57.170 30.769 0.00 0.00 39.88 4.17
2568 3104 8.096414 CCTGAAAAATTTATCCAAATGAGTGGT 58.904 33.333 0.00 0.00 39.88 4.16
2569 3105 7.550196 CCCTGAAAAATTTATCCAAATGAGTGG 59.450 37.037 0.00 0.00 40.33 4.00
2570 3106 8.313292 TCCCTGAAAAATTTATCCAAATGAGTG 58.687 33.333 0.00 0.00 34.53 3.51
2571 3107 8.434589 TCCCTGAAAAATTTATCCAAATGAGT 57.565 30.769 0.00 0.00 34.53 3.41
2572 3108 9.895138 AATCCCTGAAAAATTTATCCAAATGAG 57.105 29.630 0.00 0.00 34.53 2.90
2585 3121 9.671279 GGAAATGTAATCAAATCCCTGAAAAAT 57.329 29.630 0.00 0.00 0.00 1.82
2586 3122 8.879227 AGGAAATGTAATCAAATCCCTGAAAAA 58.121 29.630 0.00 0.00 34.79 1.94
2587 3123 8.434589 AGGAAATGTAATCAAATCCCTGAAAA 57.565 30.769 0.00 0.00 34.79 2.29
2588 3124 8.434589 AAGGAAATGTAATCAAATCCCTGAAA 57.565 30.769 0.00 0.00 34.79 2.69
2589 3125 9.713684 ATAAGGAAATGTAATCAAATCCCTGAA 57.286 29.630 0.00 0.00 34.79 3.02
2590 3126 9.135189 CATAAGGAAATGTAATCAAATCCCTGA 57.865 33.333 0.00 0.00 34.79 3.86
2591 3127 8.917088 ACATAAGGAAATGTAATCAAATCCCTG 58.083 33.333 0.00 0.00 38.31 4.45
2592 3128 9.492730 AACATAAGGAAATGTAATCAAATCCCT 57.507 29.630 0.00 0.00 39.16 4.20
2597 3133 9.249053 TGCCTAACATAAGGAAATGTAATCAAA 57.751 29.630 0.00 0.00 39.16 2.69
2598 3134 8.815565 TGCCTAACATAAGGAAATGTAATCAA 57.184 30.769 0.00 0.00 39.16 2.57
2599 3135 8.052748 ACTGCCTAACATAAGGAAATGTAATCA 58.947 33.333 0.00 0.00 39.16 2.57
2600 3136 8.451908 ACTGCCTAACATAAGGAAATGTAATC 57.548 34.615 0.00 0.00 39.16 1.75
2601 3137 8.275040 AGACTGCCTAACATAAGGAAATGTAAT 58.725 33.333 0.00 0.00 39.16 1.89
2602 3138 7.630082 AGACTGCCTAACATAAGGAAATGTAA 58.370 34.615 0.00 0.00 39.16 2.41
2603 3139 7.195374 AGACTGCCTAACATAAGGAAATGTA 57.805 36.000 0.00 0.00 39.16 2.29
2604 3140 6.067217 AGACTGCCTAACATAAGGAAATGT 57.933 37.500 0.00 0.00 41.87 2.71
2605 3141 5.529060 GGAGACTGCCTAACATAAGGAAATG 59.471 44.000 0.00 0.00 39.15 2.32
2606 3142 5.430089 AGGAGACTGCCTAACATAAGGAAAT 59.570 40.000 0.00 0.00 41.13 2.17
2607 3143 4.783227 AGGAGACTGCCTAACATAAGGAAA 59.217 41.667 0.00 0.00 41.13 3.13
2608 3144 4.362677 AGGAGACTGCCTAACATAAGGAA 58.637 43.478 0.00 0.00 41.13 3.36
2609 3145 3.961408 GAGGAGACTGCCTAACATAAGGA 59.039 47.826 0.00 0.00 44.43 3.36
2610 3146 3.964031 AGAGGAGACTGCCTAACATAAGG 59.036 47.826 0.00 0.00 44.43 2.69
2611 3147 6.909550 ATAGAGGAGACTGCCTAACATAAG 57.090 41.667 0.00 0.00 44.43 1.73
2612 3148 7.676683 AAATAGAGGAGACTGCCTAACATAA 57.323 36.000 0.00 0.00 44.43 1.90
2613 3149 7.565398 AGAAAATAGAGGAGACTGCCTAACATA 59.435 37.037 0.00 0.00 44.43 2.29
2614 3150 6.385467 AGAAAATAGAGGAGACTGCCTAACAT 59.615 38.462 0.00 0.00 44.43 2.71
2615 3151 5.721960 AGAAAATAGAGGAGACTGCCTAACA 59.278 40.000 0.00 0.00 44.43 2.41
2616 3152 6.127310 TGAGAAAATAGAGGAGACTGCCTAAC 60.127 42.308 0.00 0.00 44.43 2.34
2617 3153 5.958380 TGAGAAAATAGAGGAGACTGCCTAA 59.042 40.000 0.00 0.00 44.43 2.69
2618 3154 5.519808 TGAGAAAATAGAGGAGACTGCCTA 58.480 41.667 0.00 0.00 44.43 3.93
2619 3155 4.357325 TGAGAAAATAGAGGAGACTGCCT 58.643 43.478 0.00 0.00 44.43 4.75
2620 3156 4.744795 TGAGAAAATAGAGGAGACTGCC 57.255 45.455 0.00 0.00 44.43 4.85
2621 3157 4.511082 GCATGAGAAAATAGAGGAGACTGC 59.489 45.833 0.00 0.00 44.43 4.40
2622 3158 5.055812 GGCATGAGAAAATAGAGGAGACTG 58.944 45.833 0.00 0.00 44.43 3.51
2624 3160 5.028549 TGGCATGAGAAAATAGAGGAGAC 57.971 43.478 0.00 0.00 0.00 3.36
2625 3161 5.698741 TTGGCATGAGAAAATAGAGGAGA 57.301 39.130 0.00 0.00 0.00 3.71
2626 3162 6.956202 AATTGGCATGAGAAAATAGAGGAG 57.044 37.500 0.00 0.00 0.00 3.69
2627 3163 7.577303 ACTAATTGGCATGAGAAAATAGAGGA 58.423 34.615 0.00 0.00 0.00 3.71
2628 3164 7.500227 TGACTAATTGGCATGAGAAAATAGAGG 59.500 37.037 0.00 0.00 0.00 3.69
2629 3165 8.442632 TGACTAATTGGCATGAGAAAATAGAG 57.557 34.615 0.00 0.00 0.00 2.43
2630 3166 7.500227 CCTGACTAATTGGCATGAGAAAATAGA 59.500 37.037 0.00 0.00 30.31 1.98
2631 3167 7.284034 ACCTGACTAATTGGCATGAGAAAATAG 59.716 37.037 0.00 0.00 30.31 1.73
2632 3168 7.067372 CACCTGACTAATTGGCATGAGAAAATA 59.933 37.037 0.00 0.00 30.31 1.40
2633 3169 5.954150 ACCTGACTAATTGGCATGAGAAAAT 59.046 36.000 0.00 0.00 30.31 1.82
2634 3170 5.183713 CACCTGACTAATTGGCATGAGAAAA 59.816 40.000 0.00 0.00 30.31 2.29
2635 3171 4.701651 CACCTGACTAATTGGCATGAGAAA 59.298 41.667 0.00 0.00 30.31 2.52
2636 3172 4.263462 ACACCTGACTAATTGGCATGAGAA 60.263 41.667 0.00 0.00 30.31 2.87
2637 3173 3.264193 ACACCTGACTAATTGGCATGAGA 59.736 43.478 0.00 0.00 30.31 3.27
2638 3174 3.614092 ACACCTGACTAATTGGCATGAG 58.386 45.455 0.00 0.00 30.31 2.90
2639 3175 3.719268 ACACCTGACTAATTGGCATGA 57.281 42.857 0.00 0.00 30.31 3.07
2640 3176 7.360353 CGATATTACACCTGACTAATTGGCATG 60.360 40.741 0.00 0.00 30.31 4.06
2641 3177 6.650807 CGATATTACACCTGACTAATTGGCAT 59.349 38.462 0.00 0.00 30.31 4.40
2642 3178 5.989168 CGATATTACACCTGACTAATTGGCA 59.011 40.000 0.00 0.00 0.00 4.92
2643 3179 5.107065 GCGATATTACACCTGACTAATTGGC 60.107 44.000 0.00 0.00 0.00 4.52
2644 3180 5.408604 GGCGATATTACACCTGACTAATTGG 59.591 44.000 0.00 0.00 0.00 3.16
2645 3181 5.408604 GGGCGATATTACACCTGACTAATTG 59.591 44.000 0.00 0.00 0.00 2.32
2646 3182 5.071250 TGGGCGATATTACACCTGACTAATT 59.929 40.000 0.00 0.00 0.00 1.40
2647 3183 4.591498 TGGGCGATATTACACCTGACTAAT 59.409 41.667 0.00 0.00 0.00 1.73
2648 3184 3.962063 TGGGCGATATTACACCTGACTAA 59.038 43.478 0.00 0.00 0.00 2.24
2649 3185 3.568443 TGGGCGATATTACACCTGACTA 58.432 45.455 0.00 0.00 0.00 2.59
2650 3186 2.394632 TGGGCGATATTACACCTGACT 58.605 47.619 0.00 0.00 0.00 3.41
2651 3187 2.902705 TGGGCGATATTACACCTGAC 57.097 50.000 0.00 0.00 0.00 3.51
2652 3188 3.916359 TTTGGGCGATATTACACCTGA 57.084 42.857 0.00 0.00 0.00 3.86
2653 3189 3.945285 AGTTTTGGGCGATATTACACCTG 59.055 43.478 0.00 0.00 0.00 4.00
2654 3190 4.230745 AGTTTTGGGCGATATTACACCT 57.769 40.909 0.00 0.00 0.00 4.00
2655 3191 4.157105 ACAAGTTTTGGGCGATATTACACC 59.843 41.667 0.00 0.00 34.12 4.16
2656 3192 5.092781 CACAAGTTTTGGGCGATATTACAC 58.907 41.667 0.00 0.00 34.12 2.90
2657 3193 5.004448 TCACAAGTTTTGGGCGATATTACA 58.996 37.500 0.00 0.00 32.92 2.41
2658 3194 5.554822 TCACAAGTTTTGGGCGATATTAC 57.445 39.130 0.00 0.00 32.92 1.89
2659 3195 6.576662 TTTCACAAGTTTTGGGCGATATTA 57.423 33.333 0.00 0.00 32.92 0.98
2660 3196 5.461032 TTTCACAAGTTTTGGGCGATATT 57.539 34.783 0.00 0.00 32.92 1.28
2661 3197 5.659440 ATTTCACAAGTTTTGGGCGATAT 57.341 34.783 0.00 0.00 32.92 1.63
2662 3198 5.461032 AATTTCACAAGTTTTGGGCGATA 57.539 34.783 0.00 0.00 32.92 2.92
2663 3199 4.335400 AATTTCACAAGTTTTGGGCGAT 57.665 36.364 0.00 0.00 32.92 4.58
2664 3200 3.810310 AATTTCACAAGTTTTGGGCGA 57.190 38.095 0.00 0.00 32.92 5.54
2665 3201 4.260579 GGAAAATTTCACAAGTTTTGGGCG 60.261 41.667 8.09 0.00 30.39 6.13
2666 3202 4.036262 GGGAAAATTTCACAAGTTTTGGGC 59.964 41.667 8.09 0.00 30.39 5.36
2667 3203 5.436175 AGGGAAAATTTCACAAGTTTTGGG 58.564 37.500 10.88 0.00 34.83 4.12
2668 3204 5.527214 GGAGGGAAAATTTCACAAGTTTTGG 59.473 40.000 10.88 0.00 34.83 3.28
2669 3205 6.037062 GTGGAGGGAAAATTTCACAAGTTTTG 59.963 38.462 10.88 0.00 34.83 2.44
2670 3206 6.112734 GTGGAGGGAAAATTTCACAAGTTTT 58.887 36.000 10.88 0.00 34.83 2.43
2671 3207 5.670485 GTGGAGGGAAAATTTCACAAGTTT 58.330 37.500 10.88 0.00 34.83 2.66
2672 3208 4.202111 CGTGGAGGGAAAATTTCACAAGTT 60.202 41.667 10.88 0.00 34.83 2.66
2673 3209 3.317993 CGTGGAGGGAAAATTTCACAAGT 59.682 43.478 10.88 0.00 34.83 3.16
2674 3210 3.317993 ACGTGGAGGGAAAATTTCACAAG 59.682 43.478 10.88 6.95 34.83 3.16
2675 3211 3.067461 CACGTGGAGGGAAAATTTCACAA 59.933 43.478 10.88 0.00 34.83 3.33
2676 3212 2.621055 CACGTGGAGGGAAAATTTCACA 59.379 45.455 10.88 0.00 34.83 3.58
2677 3213 2.607038 GCACGTGGAGGGAAAATTTCAC 60.607 50.000 18.88 3.68 0.00 3.18
2678 3214 1.611491 GCACGTGGAGGGAAAATTTCA 59.389 47.619 18.88 0.00 0.00 2.69
2679 3215 1.401018 CGCACGTGGAGGGAAAATTTC 60.401 52.381 18.88 0.00 0.00 2.17
2680 3216 0.596082 CGCACGTGGAGGGAAAATTT 59.404 50.000 18.88 0.00 0.00 1.82
2681 3217 0.536460 ACGCACGTGGAGGGAAAATT 60.536 50.000 18.88 0.00 0.00 1.82
2682 3218 0.536460 AACGCACGTGGAGGGAAAAT 60.536 50.000 18.88 0.00 0.00 1.82
2683 3219 1.153127 AACGCACGTGGAGGGAAAA 60.153 52.632 18.88 0.00 0.00 2.29
2684 3220 1.595929 GAACGCACGTGGAGGGAAA 60.596 57.895 18.88 0.00 0.00 3.13
2685 3221 2.029964 GAACGCACGTGGAGGGAA 59.970 61.111 18.88 0.00 0.00 3.97
2686 3222 2.035237 AAAGAACGCACGTGGAGGGA 62.035 55.000 18.88 0.00 0.00 4.20
2687 3223 0.320073 TAAAGAACGCACGTGGAGGG 60.320 55.000 18.88 1.91 0.00 4.30
2688 3224 1.504359 TTAAAGAACGCACGTGGAGG 58.496 50.000 18.88 0.00 0.00 4.30
2689 3225 3.806316 AATTAAAGAACGCACGTGGAG 57.194 42.857 18.88 2.38 0.00 3.86
2690 3226 3.058777 GGAAATTAAAGAACGCACGTGGA 60.059 43.478 18.88 0.00 0.00 4.02
2691 3227 3.231160 GGAAATTAAAGAACGCACGTGG 58.769 45.455 18.88 10.05 0.00 4.94
2692 3228 2.900046 CGGAAATTAAAGAACGCACGTG 59.100 45.455 12.28 12.28 0.00 4.49
2693 3229 2.545106 ACGGAAATTAAAGAACGCACGT 59.455 40.909 0.00 0.00 0.00 4.49
2694 3230 2.900046 CACGGAAATTAAAGAACGCACG 59.100 45.455 0.00 0.00 0.00 5.34
2695 3231 2.655001 GCACGGAAATTAAAGAACGCAC 59.345 45.455 0.00 0.00 0.00 5.34
2696 3232 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
2697 3233 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
2713 3249 2.981898 AGGGTGTATAGTTTTCGGCAC 58.018 47.619 0.00 0.00 0.00 5.01
2714 3250 6.675413 ATATAGGGTGTATAGTTTTCGGCA 57.325 37.500 0.00 0.00 0.00 5.69
2715 3251 7.156673 TCAATATAGGGTGTATAGTTTTCGGC 58.843 38.462 0.00 0.00 0.00 5.54
2716 3252 7.817962 CCTCAATATAGGGTGTATAGTTTTCGG 59.182 40.741 0.00 0.00 32.55 4.30
2717 3253 8.582437 TCCTCAATATAGGGTGTATAGTTTTCG 58.418 37.037 0.00 0.00 37.24 3.46
2721 3257 8.826765 CCATTCCTCAATATAGGGTGTATAGTT 58.173 37.037 0.00 0.00 37.24 2.24
2722 3258 8.184249 TCCATTCCTCAATATAGGGTGTATAGT 58.816 37.037 0.00 0.00 37.24 2.12
2723 3259 8.609617 TCCATTCCTCAATATAGGGTGTATAG 57.390 38.462 0.00 0.00 37.24 1.31
2724 3260 7.623677 CCTCCATTCCTCAATATAGGGTGTATA 59.376 40.741 0.00 0.00 37.24 1.47
2725 3261 6.445139 CCTCCATTCCTCAATATAGGGTGTAT 59.555 42.308 0.00 0.00 37.24 2.29
2726 3262 5.785423 CCTCCATTCCTCAATATAGGGTGTA 59.215 44.000 0.00 0.00 37.24 2.90
2727 3263 4.599241 CCTCCATTCCTCAATATAGGGTGT 59.401 45.833 0.00 0.00 37.24 4.16
2728 3264 4.018960 CCCTCCATTCCTCAATATAGGGTG 60.019 50.000 0.00 0.00 37.93 4.61
2729 3265 4.140204 TCCCTCCATTCCTCAATATAGGGT 60.140 45.833 0.00 0.00 40.84 4.34
2730 3266 4.438913 TCCCTCCATTCCTCAATATAGGG 58.561 47.826 0.00 0.00 41.12 3.53
2731 3267 5.097234 ACTCCCTCCATTCCTCAATATAGG 58.903 45.833 0.00 0.00 38.06 2.57
2732 3268 7.798710 TTACTCCCTCCATTCCTCAATATAG 57.201 40.000 0.00 0.00 0.00 1.31
2734 3270 8.940012 ATATTACTCCCTCCATTCCTCAATAT 57.060 34.615 0.00 0.00 0.00 1.28
2735 3271 8.757307 AATATTACTCCCTCCATTCCTCAATA 57.243 34.615 0.00 0.00 0.00 1.90
2736 3272 7.519004 AGAATATTACTCCCTCCATTCCTCAAT 59.481 37.037 0.00 0.00 0.00 2.57
2737 3273 6.851836 AGAATATTACTCCCTCCATTCCTCAA 59.148 38.462 0.00 0.00 0.00 3.02
2738 3274 6.393897 AGAATATTACTCCCTCCATTCCTCA 58.606 40.000 0.00 0.00 0.00 3.86
2739 3275 6.943899 AGAATATTACTCCCTCCATTCCTC 57.056 41.667 0.00 0.00 0.00 3.71
2740 3276 7.313731 TGTAGAATATTACTCCCTCCATTCCT 58.686 38.462 0.00 0.00 0.00 3.36
2741 3277 7.554959 TGTAGAATATTACTCCCTCCATTCC 57.445 40.000 0.00 0.00 0.00 3.01
2742 3278 8.816894 TGATGTAGAATATTACTCCCTCCATTC 58.183 37.037 0.00 0.00 0.00 2.67
2743 3279 8.742125 TGATGTAGAATATTACTCCCTCCATT 57.258 34.615 0.00 0.00 0.00 3.16
2744 3280 8.742125 TTGATGTAGAATATTACTCCCTCCAT 57.258 34.615 0.00 0.00 0.00 3.41
2745 3281 8.742125 ATTGATGTAGAATATTACTCCCTCCA 57.258 34.615 0.00 0.00 0.00 3.86
2748 3284 9.712305 CGAAATTGATGTAGAATATTACTCCCT 57.288 33.333 0.00 0.00 0.00 4.20
2749 3285 8.443937 GCGAAATTGATGTAGAATATTACTCCC 58.556 37.037 0.00 0.00 0.00 4.30
2750 3286 8.443937 GGCGAAATTGATGTAGAATATTACTCC 58.556 37.037 0.00 0.00 0.00 3.85
2751 3287 8.988934 TGGCGAAATTGATGTAGAATATTACTC 58.011 33.333 0.00 0.00 0.00 2.59
2752 3288 8.902540 TGGCGAAATTGATGTAGAATATTACT 57.097 30.769 0.00 0.00 0.00 2.24
2753 3289 9.546909 CATGGCGAAATTGATGTAGAATATTAC 57.453 33.333 0.00 0.00 0.00 1.89
2754 3290 8.729756 CCATGGCGAAATTGATGTAGAATATTA 58.270 33.333 0.00 0.00 0.00 0.98
2755 3291 7.448161 TCCATGGCGAAATTGATGTAGAATATT 59.552 33.333 6.96 0.00 0.00 1.28
2769 3305 4.021192 ACTTGAAATGTTCCATGGCGAAAT 60.021 37.500 6.96 0.00 0.00 2.17
2804 3340 4.071423 GGATTTGTTTGGGATTTGGTTGG 58.929 43.478 0.00 0.00 0.00 3.77
2807 3343 3.321950 TGGGATTTGTTTGGGATTTGGT 58.678 40.909 0.00 0.00 0.00 3.67
2808 3344 4.202451 ACTTGGGATTTGTTTGGGATTTGG 60.202 41.667 0.00 0.00 0.00 3.28
2810 3346 4.907269 AGACTTGGGATTTGTTTGGGATTT 59.093 37.500 0.00 0.00 0.00 2.17
2811 3347 4.492646 AGACTTGGGATTTGTTTGGGATT 58.507 39.130 0.00 0.00 0.00 3.01
2814 3350 5.716703 AGATAAGACTTGGGATTTGTTTGGG 59.283 40.000 0.00 0.00 0.00 4.12
2815 3351 6.434028 TGAGATAAGACTTGGGATTTGTTTGG 59.566 38.462 0.00 0.00 0.00 3.28
2880 3420 3.965379 TGGTTGGTCTTGCGTAATAGA 57.035 42.857 0.00 0.00 0.00 1.98
2909 3449 4.337264 AAGATGCCACCTAGGGAAAAAT 57.663 40.909 14.81 0.00 42.99 1.82
2913 3453 3.130734 ACTAAGATGCCACCTAGGGAA 57.869 47.619 14.81 0.00 42.99 3.97
2914 3454 2.868964 ACTAAGATGCCACCTAGGGA 57.131 50.000 14.81 0.00 44.34 4.20
3225 3768 6.187727 TGGGAAGATAGATGGGTTAATGAC 57.812 41.667 0.00 0.00 0.00 3.06
3707 4278 4.346418 ACAGAATGGAGAAGAAGTGTGAGT 59.654 41.667 0.00 0.00 43.62 3.41
3795 4372 2.513738 TGCCCTATAGGAAGTTTGCCAT 59.486 45.455 21.07 0.00 38.24 4.40
3826 4404 7.543520 GCTGCTAATAAAGTTTCTGAATTTGCT 59.456 33.333 12.97 0.00 32.14 3.91
3828 4406 8.031277 AGGCTGCTAATAAAGTTTCTGAATTTG 58.969 33.333 0.00 0.00 0.00 2.32
3839 4424 2.205342 TGGGGAGGCTGCTAATAAAGT 58.795 47.619 5.84 0.00 0.00 2.66
3987 4578 3.705604 ACAAAGGAACAAACATGCTTCG 58.294 40.909 0.00 0.00 0.00 3.79
4337 4970 4.751600 TGCATGAGGCTTTGAATAGTATCG 59.248 41.667 0.00 0.00 45.15 2.92
4436 5071 9.479549 AGGTGTTAATGAACAGATTAAATGGAT 57.520 29.630 0.00 0.00 46.20 3.41
4501 5136 7.120432 GGCTAATCAGATTCAAAAGTTCAGACT 59.880 37.037 0.00 0.00 37.87 3.24
4897 5533 9.586435 GAGGAAACATAAAATCAATAGTTTGGG 57.414 33.333 0.00 0.00 33.44 4.12
5025 5661 4.959210 AGAGCTCAACTAGATAGGCTTTCA 59.041 41.667 17.77 0.00 0.00 2.69
5026 5662 5.529581 AGAGCTCAACTAGATAGGCTTTC 57.470 43.478 17.77 0.00 0.00 2.62
5067 5705 5.255687 TCATGGATTAACTGTTGCTGACAT 58.744 37.500 2.69 0.00 37.69 3.06
5153 5792 6.064717 GGTGGAGTAGAAATATGAATGCCTT 58.935 40.000 0.00 0.00 0.00 4.35
5365 6005 5.646215 TCTAGATAGGGAGAAATCTGACCC 58.354 45.833 0.00 0.00 42.36 4.46
5492 6133 8.253810 TGAGAGAACTTGATTTACATGGTAGAG 58.746 37.037 0.00 0.00 0.00 2.43
5573 6214 6.987403 AAACTTTAGATAAAAACAGGCCCA 57.013 33.333 0.00 0.00 0.00 5.36
5692 6334 4.883585 CCTGGTGTTGATATATGCACAACT 59.116 41.667 15.55 0.00 42.60 3.16
5827 6478 0.486879 ACTTGCCAGGGGGAAATCAA 59.513 50.000 0.00 0.00 31.44 2.57
5849 6502 3.673323 GCACGGATTTTCATTGGGACTTC 60.673 47.826 0.00 0.00 0.00 3.01
5942 6595 5.279156 GGAAATGGTGATGGATATGAAAGCC 60.279 44.000 0.00 0.00 0.00 4.35
5994 6648 5.215845 ACCATTGGTATTAATTCTTGGGGG 58.784 41.667 6.54 0.00 32.11 5.40
5995 6649 7.294584 TCTACCATTGGTATTAATTCTTGGGG 58.705 38.462 15.82 0.43 37.56 4.96
5996 6650 8.940397 ATCTACCATTGGTATTAATTCTTGGG 57.060 34.615 15.82 0.62 37.56 4.12
6015 6841 6.437477 ACCAGAATTTTGGAGGAAAATCTACC 59.563 38.462 21.24 0.00 42.41 3.18
6028 6854 5.213891 AGCAAAACCTACCAGAATTTTGG 57.786 39.130 13.33 13.33 40.67 3.28
6029 6855 6.515832 AGAAGCAAAACCTACCAGAATTTTG 58.484 36.000 4.36 4.36 42.36 2.44
6031 6857 7.004691 AGTAGAAGCAAAACCTACCAGAATTT 58.995 34.615 0.00 0.00 34.78 1.82
6046 6872 4.706842 ACAAAGGGAAGAGTAGAAGCAA 57.293 40.909 0.00 0.00 0.00 3.91
6052 6878 6.936279 TCTCACATAACAAAGGGAAGAGTAG 58.064 40.000 0.00 0.00 0.00 2.57
6092 6918 5.441718 TGAGGAAGATAAGGCTTGTCAAT 57.558 39.130 23.40 13.13 0.00 2.57
6096 6922 4.043596 AGGATGAGGAAGATAAGGCTTGT 58.956 43.478 10.69 2.14 0.00 3.16
6157 6983 9.760660 GTGTAATTGAAACAGAGAACATGATAC 57.239 33.333 0.00 0.00 0.00 2.24
6393 7221 5.083821 GGGAGAGAGATGCTAGTAAGGATT 58.916 45.833 0.00 0.00 33.29 3.01
6400 7228 3.749310 CGGTTAGGGAGAGAGATGCTAGT 60.749 52.174 0.00 0.00 0.00 2.57
6407 7235 0.683504 GCCACGGTTAGGGAGAGAGA 60.684 60.000 0.00 0.00 0.00 3.10
6509 7345 6.992123 AGTCATTTGGGAAAAGATTGGAAAAC 59.008 34.615 0.00 0.00 0.00 2.43
6559 7395 7.639461 CGAAGTAGAGAGAAACCGACTATAAAC 59.361 40.741 0.00 0.00 0.00 2.01
6826 7714 0.744414 GCAACTCCGGCATCTTAGCA 60.744 55.000 0.00 0.00 35.83 3.49
7151 8041 5.888412 ACACGAATTTCAAAGCAAATGTC 57.112 34.783 0.00 0.00 0.00 3.06
7165 8055 2.806244 GCAGGTCACAGTTACACGAATT 59.194 45.455 0.00 0.00 0.00 2.17
7317 8207 7.902087 AGCAAGACTTCTGTAAAGAGACTAAT 58.098 34.615 0.00 0.00 0.00 1.73
7318 8208 7.291411 AGCAAGACTTCTGTAAAGAGACTAA 57.709 36.000 0.00 0.00 0.00 2.24
7465 10946 7.959689 TTTAGTACACGCAACCTGTAATTAA 57.040 32.000 0.00 0.00 0.00 1.40
7492 10973 6.263617 ACATTTCTTTTAGAAGCACCGGTAAA 59.736 34.615 6.87 0.00 35.37 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.