Multiple sequence alignment - TraesCS4B01G182300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G182300 chr4B 100.000 4955 0 0 565 5519 399291459 399286505 0.000000e+00 9151.0
1 TraesCS4B01G182300 chr4B 100.000 171 0 0 1 171 399292023 399291853 3.210000e-82 316.0
2 TraesCS4B01G182300 chr4D 94.080 1723 38 16 3278 4957 321796458 321798159 0.000000e+00 2558.0
3 TraesCS4B01G182300 chr4D 98.124 1279 22 2 2009 3286 321795148 321796425 0.000000e+00 2228.0
4 TraesCS4B01G182300 chr4D 95.234 1049 26 5 732 1780 321794124 321795148 0.000000e+00 1639.0
5 TraesCS4B01G182300 chr4D 98.707 232 2 1 1780 2010 348143309 348143540 1.430000e-110 411.0
6 TraesCS4B01G182300 chr4D 90.361 166 13 3 565 729 321793132 321793295 1.200000e-51 215.0
7 TraesCS4B01G182300 chr4A 93.881 1716 43 14 3278 4950 151309513 151307817 0.000000e+00 2531.0
8 TraesCS4B01G182300 chr4A 94.260 1115 32 11 683 1780 151317392 151316293 0.000000e+00 1676.0
9 TraesCS4B01G182300 chr4A 95.900 683 17 4 2608 3289 151310215 151309543 0.000000e+00 1096.0
10 TraesCS4B01G182300 chr4A 95.380 606 25 3 2009 2612 151316293 151315689 0.000000e+00 961.0
11 TraesCS4B01G182300 chr4A 86.813 91 8 3 566 656 151318896 151318810 1.270000e-16 99.0
12 TraesCS4B01G182300 chr2B 94.717 530 26 2 4992 5519 79363095 79363624 0.000000e+00 822.0
13 TraesCS4B01G182300 chr2B 73.759 282 66 7 5242 5518 680868480 680868202 2.720000e-18 104.0
14 TraesCS4B01G182300 chr7A 90.000 530 50 3 4992 5519 625624808 625624280 0.000000e+00 682.0
15 TraesCS4B01G182300 chr7A 100.000 29 0 0 1735 1763 83010764 83010736 3.000000e-03 54.7
16 TraesCS4B01G182300 chr3D 85.444 529 74 3 4992 5518 182643386 182643913 1.050000e-151 547.0
17 TraesCS4B01G182300 chr3D 98.268 231 3 1 1779 2008 301041751 301041981 2.390000e-108 403.0
18 TraesCS4B01G182300 chr3D 98.268 231 3 1 1780 2009 387269353 387269583 2.390000e-108 403.0
19 TraesCS4B01G182300 chr7D 96.735 245 5 3 1769 2010 509748877 509749121 6.660000e-109 405.0
20 TraesCS4B01G182300 chr7D 98.268 231 3 1 1780 2009 284740645 284740875 2.390000e-108 403.0
21 TraesCS4B01G182300 chr7D 93.491 169 11 0 3 171 556783774 556783606 9.180000e-63 252.0
22 TraesCS4B01G182300 chr7D 91.667 168 14 0 4 171 510344127 510343960 3.320000e-57 233.0
23 TraesCS4B01G182300 chr7D 90.058 171 16 1 1 171 55489403 55489234 2.590000e-53 220.0
24 TraesCS4B01G182300 chr1D 98.276 232 3 1 1779 2009 337774431 337774662 6.660000e-109 405.0
25 TraesCS4B01G182300 chr1D 98.268 231 3 1 1780 2009 191676769 191676539 2.390000e-108 403.0
26 TraesCS4B01G182300 chr1D 90.643 171 15 1 1 171 396167532 396167363 5.560000e-55 226.0
27 TraesCS4B01G182300 chr2D 97.863 234 4 1 1779 2011 161288782 161289015 2.390000e-108 403.0
28 TraesCS4B01G182300 chr2D 97.863 234 4 1 1779 2011 529900327 529900560 2.390000e-108 403.0
29 TraesCS4B01G182300 chr2D 90.196 51 5 0 5469 5519 562368086 562368136 3.570000e-07 67.6
30 TraesCS4B01G182300 chr2D 87.719 57 7 0 5463 5519 650876430 650876486 3.570000e-07 67.6
31 TraesCS4B01G182300 chr6B 93.567 171 11 0 1 171 692096945 692096775 7.090000e-64 255.0
32 TraesCS4B01G182300 chr5D 93.567 171 11 0 1 171 495743476 495743306 7.090000e-64 255.0
33 TraesCS4B01G182300 chr1A 91.813 171 13 1 1 171 79105044 79105213 2.570000e-58 237.0
34 TraesCS4B01G182300 chr1B 91.667 168 14 0 1 168 569436941 569437108 3.320000e-57 233.0
35 TraesCS4B01G182300 chr2A 91.228 171 12 3 1 171 749868687 749868854 4.300000e-56 230.0
36 TraesCS4B01G182300 chrUn 96.875 32 1 0 1732 1763 33306385 33306416 3.000000e-03 54.7
37 TraesCS4B01G182300 chrUn 96.875 32 1 0 1732 1763 407258583 407258614 3.000000e-03 54.7
38 TraesCS4B01G182300 chr6A 100.000 29 0 0 1735 1763 120985686 120985714 3.000000e-03 54.7
39 TraesCS4B01G182300 chr5B 96.875 32 1 0 1732 1763 149455350 149455381 3.000000e-03 54.7
40 TraesCS4B01G182300 chr3B 100.000 29 0 0 1735 1763 813891056 813891028 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G182300 chr4B 399286505 399292023 5518 True 4733.5 9151 100.00000 1 5519 2 chr4B.!!$R1 5518
1 TraesCS4B01G182300 chr4D 321793132 321798159 5027 False 1660.0 2558 94.44975 565 4957 4 chr4D.!!$F2 4392
2 TraesCS4B01G182300 chr4A 151307817 151310215 2398 True 1813.5 2531 94.89050 2608 4950 2 chr4A.!!$R1 2342
3 TraesCS4B01G182300 chr4A 151315689 151318896 3207 True 912.0 1676 92.15100 566 2612 3 chr4A.!!$R2 2046
4 TraesCS4B01G182300 chr2B 79363095 79363624 529 False 822.0 822 94.71700 4992 5519 1 chr2B.!!$F1 527
5 TraesCS4B01G182300 chr7A 625624280 625624808 528 True 682.0 682 90.00000 4992 5519 1 chr7A.!!$R2 527
6 TraesCS4B01G182300 chr3D 182643386 182643913 527 False 547.0 547 85.44400 4992 5518 1 chr3D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.106469 TCAGATCTGACGAGGAGGGG 60.106 60.000 21.67 0.0 34.14 4.79 F
1516 3754 0.036671 AATTCCGGACGGAGGTTGTC 60.037 55.000 13.64 0.0 46.06 3.18 F
1899 4145 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.000 0.00 0.0 0.00 5.69 F
1969 4215 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.0 45.88 4.75 F
1983 4229 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.0 39.06 4.17 F
1984 4230 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.0 39.06 3.67 F
1985 4231 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.0 35.26 3.77 F
3864 6165 1.065053 CCCGTGGTTGGGTGATTATCA 60.065 52.381 0.00 0.0 44.76 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 4126 0.036010 CCGCACTCCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32 R
2542 4790 0.315886 TTAGCGCCGTGACTTGAGAA 59.684 50.000 2.29 0.00 0.00 2.87 R
2730 4978 2.647299 TGCACCCTCCCATCTAAAAAGA 59.353 45.455 0.00 0.00 0.00 2.52 R
3929 6230 0.951558 GGTTGTGTGCCCTAAGTGTG 59.048 55.000 0.00 0.00 0.00 3.82 R
4081 6382 1.277739 CTGTGTGTGTCAGCTTGCG 59.722 57.895 0.00 0.00 0.00 4.85 R
4193 6494 6.991938 TGCATAGCCAAAGAAACATTTAAGT 58.008 32.000 0.00 0.00 0.00 2.24 R
4194 6495 6.532657 CCTGCATAGCCAAAGAAACATTTAAG 59.467 38.462 0.00 0.00 0.00 1.85 R
4900 7241 0.099613 TCAAGTGAGAGATCGCTCGC 59.900 55.000 26.73 26.73 45.98 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.238438 CAGGGGAGAGGAGCCATG 58.762 66.667 0.00 0.00 0.00 3.66
18 19 2.771762 AGGGGAGAGGAGCCATGC 60.772 66.667 0.00 0.00 0.00 4.06
19 20 3.883549 GGGGAGAGGAGCCATGCC 61.884 72.222 0.00 0.00 0.00 4.40
20 21 2.771762 GGGAGAGGAGCCATGCCT 60.772 66.667 0.00 0.00 38.81 4.75
25 26 4.414986 AGGAGCCATGCCTCAGAT 57.585 55.556 5.98 0.00 33.47 2.90
26 27 2.144040 AGGAGCCATGCCTCAGATC 58.856 57.895 5.98 0.00 33.47 2.75
27 28 0.400237 AGGAGCCATGCCTCAGATCT 60.400 55.000 5.98 0.00 33.47 2.75
28 29 0.250381 GGAGCCATGCCTCAGATCTG 60.250 60.000 17.07 17.07 33.47 2.90
29 30 0.757512 GAGCCATGCCTCAGATCTGA 59.242 55.000 23.75 23.75 38.06 3.27
30 31 0.469070 AGCCATGCCTCAGATCTGAC 59.531 55.000 21.67 13.33 35.46 3.51
31 32 0.879400 GCCATGCCTCAGATCTGACG 60.879 60.000 21.67 18.00 35.46 4.35
32 33 0.749049 CCATGCCTCAGATCTGACGA 59.251 55.000 21.67 8.52 35.46 4.20
33 34 1.269673 CCATGCCTCAGATCTGACGAG 60.270 57.143 21.67 13.72 35.46 4.18
38 39 1.317613 CTCAGATCTGACGAGGAGGG 58.682 60.000 21.67 5.67 35.46 4.30
39 40 0.106469 TCAGATCTGACGAGGAGGGG 60.106 60.000 21.67 0.00 34.14 4.79
40 41 0.106469 CAGATCTGACGAGGAGGGGA 60.106 60.000 18.34 0.00 0.00 4.81
41 42 0.631753 AGATCTGACGAGGAGGGGAA 59.368 55.000 0.00 0.00 0.00 3.97
42 43 1.036707 GATCTGACGAGGAGGGGAAG 58.963 60.000 0.00 0.00 0.00 3.46
43 44 0.631753 ATCTGACGAGGAGGGGAAGA 59.368 55.000 0.00 0.00 0.00 2.87
44 45 0.323542 TCTGACGAGGAGGGGAAGAC 60.324 60.000 0.00 0.00 0.00 3.01
45 46 1.305046 TGACGAGGAGGGGAAGACC 60.305 63.158 0.00 0.00 39.11 3.85
46 47 1.000612 GACGAGGAGGGGAAGACCT 59.999 63.158 0.00 0.00 45.57 3.85
113 114 4.373116 GTCGCCGGCCAGAGAACA 62.373 66.667 23.46 0.00 0.00 3.18
114 115 4.373116 TCGCCGGCCAGAGAACAC 62.373 66.667 23.46 0.00 0.00 3.32
117 118 4.760047 CCGGCCAGAGAACACCCG 62.760 72.222 2.24 0.00 38.71 5.28
121 122 3.691342 CCAGAGAACACCCGCGGA 61.691 66.667 30.73 0.00 0.00 5.54
122 123 2.579201 CAGAGAACACCCGCGGAT 59.421 61.111 30.73 6.36 0.00 4.18
123 124 1.811266 CAGAGAACACCCGCGGATG 60.811 63.158 30.73 25.88 0.00 3.51
124 125 1.982395 AGAGAACACCCGCGGATGA 60.982 57.895 30.54 0.00 0.00 2.92
125 126 1.810030 GAGAACACCCGCGGATGAC 60.810 63.158 30.54 19.59 0.00 3.06
136 137 3.838271 GGATGACGCCAGCCGAGA 61.838 66.667 0.00 0.00 39.28 4.04
137 138 2.419198 GATGACGCCAGCCGAGAT 59.581 61.111 0.00 0.00 41.02 2.75
138 139 1.953138 GATGACGCCAGCCGAGATG 60.953 63.158 0.00 0.00 41.02 2.90
139 140 3.451556 ATGACGCCAGCCGAGATGG 62.452 63.158 4.08 4.08 42.66 3.51
591 592 9.577110 GTTGAAATGATAGATGCATTTTCTTCA 57.423 29.630 16.29 9.19 43.74 3.02
656 658 5.187687 AGAAGAACACTTTCGGGTTTTACA 58.812 37.500 0.00 0.00 36.78 2.41
677 679 5.010282 ACATGACCTTCCAACTATCAAACC 58.990 41.667 0.00 0.00 0.00 3.27
681 2079 3.007635 CCTTCCAACTATCAAACCGGTC 58.992 50.000 8.04 0.00 0.00 4.79
686 2084 3.566322 CCAACTATCAAACCGGTCAAACA 59.434 43.478 8.04 0.00 0.00 2.83
700 2098 1.448540 AAACAGCCAGATCTCGCGG 60.449 57.895 10.65 10.65 0.00 6.46
943 3178 3.760035 GAGCTTCTCGCCGTCCCA 61.760 66.667 0.00 0.00 40.39 4.37
985 3220 2.750637 ACCACGACGCCTCGATCT 60.751 61.111 12.14 0.00 43.06 2.75
986 3221 2.024871 CCACGACGCCTCGATCTC 59.975 66.667 12.14 0.00 43.06 2.75
1177 3412 1.878656 CGTTGAGGCCTCGGAGTTCT 61.879 60.000 27.43 0.76 0.00 3.01
1311 3548 3.873952 GGGAATTTGTGGATCTCGAGAAG 59.126 47.826 20.91 0.00 0.00 2.85
1370 3608 5.363562 TGAAATGATGACTAGTGGATGCT 57.636 39.130 0.00 0.00 0.00 3.79
1391 3629 3.097877 TGAACTTCGATGCTATGCGAT 57.902 42.857 0.00 0.00 36.31 4.58
1406 3644 1.977594 GCGATAGGGTTTGGCGTGTG 61.978 60.000 0.00 0.00 0.00 3.82
1423 3661 2.157668 GTGTGCTGTCGAATAAGGTGTG 59.842 50.000 0.00 0.00 0.00 3.82
1429 3667 1.128692 GTCGAATAAGGTGTGCAGTGC 59.871 52.381 8.58 8.58 0.00 4.40
1464 3702 2.280628 CCTCCGTCTGGAATTAACTGC 58.719 52.381 0.00 0.00 45.87 4.40
1466 3704 1.626321 TCCGTCTGGAATTAACTGCCA 59.374 47.619 0.00 0.00 42.85 4.92
1473 3711 6.625740 CGTCTGGAATTAACTGCCAATGAAAT 60.626 38.462 0.00 0.00 0.00 2.17
1516 3754 0.036671 AATTCCGGACGGAGGTTGTC 60.037 55.000 13.64 0.00 46.06 3.18
1608 3854 5.046950 AGTGGTGGCTTTGTTTAACTTTTGA 60.047 36.000 0.00 0.00 0.00 2.69
1636 3882 0.249868 GACTGTGTGTGCAGGCTGTA 60.250 55.000 17.16 9.18 41.18 2.74
1754 4000 6.892658 TTGGTTTGCATGATACAGTTAGTT 57.107 33.333 0.00 0.00 0.00 2.24
1780 4026 6.267496 AGTTGTATTGCCTTTTATGGTCAC 57.733 37.500 0.00 0.00 0.00 3.67
1781 4027 6.010219 AGTTGTATTGCCTTTTATGGTCACT 58.990 36.000 0.00 0.00 0.00 3.41
1782 4028 7.172342 AGTTGTATTGCCTTTTATGGTCACTA 58.828 34.615 0.00 0.00 0.00 2.74
1783 4029 7.336931 AGTTGTATTGCCTTTTATGGTCACTAG 59.663 37.037 0.00 0.00 0.00 2.57
1784 4030 5.588648 TGTATTGCCTTTTATGGTCACTAGC 59.411 40.000 0.00 0.00 0.00 3.42
1785 4031 3.712016 TGCCTTTTATGGTCACTAGCA 57.288 42.857 0.00 0.00 37.55 3.49
1786 4032 4.027674 TGCCTTTTATGGTCACTAGCAA 57.972 40.909 0.00 0.00 36.53 3.91
1787 4033 4.009675 TGCCTTTTATGGTCACTAGCAAG 58.990 43.478 0.00 0.00 36.53 4.01
1788 4034 4.261801 GCCTTTTATGGTCACTAGCAAGA 58.738 43.478 0.00 0.00 36.53 3.02
1789 4035 4.884164 GCCTTTTATGGTCACTAGCAAGAT 59.116 41.667 0.00 0.00 36.53 2.40
1790 4036 5.220931 GCCTTTTATGGTCACTAGCAAGATG 60.221 44.000 0.00 0.00 36.53 2.90
1791 4037 5.220931 CCTTTTATGGTCACTAGCAAGATGC 60.221 44.000 0.00 0.00 45.46 3.91
1792 4038 2.338577 ATGGTCACTAGCAAGATGCC 57.661 50.000 0.00 0.00 46.52 4.40
1793 4039 0.253044 TGGTCACTAGCAAGATGCCC 59.747 55.000 0.00 0.00 46.52 5.36
1794 4040 0.811616 GGTCACTAGCAAGATGCCCG 60.812 60.000 0.00 0.00 46.52 6.13
1795 4041 0.108138 GTCACTAGCAAGATGCCCGT 60.108 55.000 0.00 0.00 46.52 5.28
1796 4042 0.108186 TCACTAGCAAGATGCCCGTG 60.108 55.000 12.59 12.59 46.52 4.94
1797 4043 1.450312 ACTAGCAAGATGCCCGTGC 60.450 57.895 6.11 6.11 46.52 5.34
1800 4046 3.737172 GCAAGATGCCCGTGCGTT 61.737 61.111 0.00 0.00 40.20 4.84
1801 4047 2.176546 CAAGATGCCCGTGCGTTG 59.823 61.111 0.00 0.00 41.78 4.10
1802 4048 3.737172 AAGATGCCCGTGCGTTGC 61.737 61.111 0.00 0.00 41.78 4.17
1812 4058 2.942879 TGCGTTGCACGGAACATC 59.057 55.556 10.02 0.00 39.47 3.06
1813 4059 1.889573 TGCGTTGCACGGAACATCA 60.890 52.632 10.02 0.00 39.47 3.07
1814 4060 1.281353 GCGTTGCACGGAACATCAA 59.719 52.632 10.02 0.00 42.82 2.57
1815 4061 0.725784 GCGTTGCACGGAACATCAAG 60.726 55.000 10.02 0.00 42.82 3.02
1816 4062 0.865111 CGTTGCACGGAACATCAAGA 59.135 50.000 2.31 0.00 38.08 3.02
1817 4063 1.464608 CGTTGCACGGAACATCAAGAT 59.535 47.619 2.31 0.00 38.08 2.40
1818 4064 2.725759 CGTTGCACGGAACATCAAGATG 60.726 50.000 8.45 8.45 40.19 2.90
1819 4065 0.804364 TGCACGGAACATCAAGATGC 59.196 50.000 9.85 0.00 42.39 3.91
1820 4066 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
1821 4067 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
1822 4068 2.159338 GCACGGAACATCAAGATGCATT 60.159 45.455 9.85 0.00 42.39 3.56
1823 4069 3.674138 GCACGGAACATCAAGATGCATTT 60.674 43.478 9.85 0.00 42.39 2.32
1824 4070 3.855379 CACGGAACATCAAGATGCATTTG 59.145 43.478 9.85 7.88 42.39 2.32
1825 4071 3.507233 ACGGAACATCAAGATGCATTTGT 59.493 39.130 9.85 0.00 42.39 2.83
1826 4072 4.699735 ACGGAACATCAAGATGCATTTGTA 59.300 37.500 9.85 0.00 42.39 2.41
1827 4073 5.357878 ACGGAACATCAAGATGCATTTGTAT 59.642 36.000 9.85 1.80 42.39 2.29
1828 4074 5.684184 CGGAACATCAAGATGCATTTGTATG 59.316 40.000 9.85 13.57 42.39 2.39
1829 4075 6.458615 CGGAACATCAAGATGCATTTGTATGA 60.459 38.462 22.17 15.31 42.39 2.15
1830 4076 6.916387 GGAACATCAAGATGCATTTGTATGAG 59.084 38.462 22.17 12.56 42.39 2.90
1831 4077 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
1832 4078 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
1833 4079 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
1834 4080 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
1835 4081 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
1836 4082 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
1837 4083 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
1843 4089 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
1844 4090 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
1846 4092 8.786826 TTTGTATGAGTAGTTTATCTTGTGGG 57.213 34.615 0.00 0.00 0.00 4.61
1847 4093 7.727578 TGTATGAGTAGTTTATCTTGTGGGA 57.272 36.000 0.00 0.00 0.00 4.37
1848 4094 7.782049 TGTATGAGTAGTTTATCTTGTGGGAG 58.218 38.462 0.00 0.00 0.00 4.30
1849 4095 7.618117 TGTATGAGTAGTTTATCTTGTGGGAGA 59.382 37.037 0.00 0.00 0.00 3.71
1850 4096 6.928348 TGAGTAGTTTATCTTGTGGGAGAA 57.072 37.500 0.00 0.00 0.00 2.87
1851 4097 7.311092 TGAGTAGTTTATCTTGTGGGAGAAA 57.689 36.000 0.00 0.00 0.00 2.52
1852 4098 7.741785 TGAGTAGTTTATCTTGTGGGAGAAAA 58.258 34.615 0.00 0.00 29.99 2.29
1853 4099 7.878127 TGAGTAGTTTATCTTGTGGGAGAAAAG 59.122 37.037 0.00 0.00 29.99 2.27
1854 4100 7.168905 AGTAGTTTATCTTGTGGGAGAAAAGG 58.831 38.462 0.00 0.00 29.99 3.11
1855 4101 6.200878 AGTTTATCTTGTGGGAGAAAAGGA 57.799 37.500 0.00 0.00 29.99 3.36
1856 4102 6.794534 AGTTTATCTTGTGGGAGAAAAGGAT 58.205 36.000 0.00 0.00 29.99 3.24
1857 4103 6.660949 AGTTTATCTTGTGGGAGAAAAGGATG 59.339 38.462 0.00 0.00 29.99 3.51
1858 4104 4.934797 ATCTTGTGGGAGAAAAGGATGA 57.065 40.909 0.00 0.00 0.00 2.92
1859 4105 4.722526 TCTTGTGGGAGAAAAGGATGAA 57.277 40.909 0.00 0.00 0.00 2.57
1860 4106 4.398319 TCTTGTGGGAGAAAAGGATGAAC 58.602 43.478 0.00 0.00 0.00 3.18
1861 4107 2.778299 TGTGGGAGAAAAGGATGAACG 58.222 47.619 0.00 0.00 0.00 3.95
1862 4108 2.370519 TGTGGGAGAAAAGGATGAACGA 59.629 45.455 0.00 0.00 0.00 3.85
1863 4109 3.003480 GTGGGAGAAAAGGATGAACGAG 58.997 50.000 0.00 0.00 0.00 4.18
1864 4110 2.027192 TGGGAGAAAAGGATGAACGAGG 60.027 50.000 0.00 0.00 0.00 4.63
1865 4111 2.633488 GGAGAAAAGGATGAACGAGGG 58.367 52.381 0.00 0.00 0.00 4.30
1866 4112 2.236395 GGAGAAAAGGATGAACGAGGGA 59.764 50.000 0.00 0.00 0.00 4.20
1867 4113 3.307480 GGAGAAAAGGATGAACGAGGGAA 60.307 47.826 0.00 0.00 0.00 3.97
1868 4114 3.935828 GAGAAAAGGATGAACGAGGGAAG 59.064 47.826 0.00 0.00 0.00 3.46
1869 4115 2.789409 AAAGGATGAACGAGGGAAGG 57.211 50.000 0.00 0.00 0.00 3.46
1870 4116 0.253327 AAGGATGAACGAGGGAAGGC 59.747 55.000 0.00 0.00 0.00 4.35
1871 4117 1.153147 GGATGAACGAGGGAAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
1872 4118 1.627297 GGATGAACGAGGGAAGGCCT 61.627 60.000 0.00 0.00 0.00 5.19
1873 4119 0.253327 GATGAACGAGGGAAGGCCTT 59.747 55.000 20.65 20.65 0.00 4.35
1874 4120 1.485066 GATGAACGAGGGAAGGCCTTA 59.515 52.381 20.54 0.00 0.00 2.69
1875 4121 1.580059 TGAACGAGGGAAGGCCTTAT 58.420 50.000 20.54 7.60 0.00 1.73
1876 4122 1.485066 TGAACGAGGGAAGGCCTTATC 59.515 52.381 20.54 15.67 0.00 1.75
1877 4123 1.763545 GAACGAGGGAAGGCCTTATCT 59.236 52.381 20.54 18.47 0.00 1.98
1878 4124 1.123928 ACGAGGGAAGGCCTTATCTG 58.876 55.000 20.54 14.43 0.00 2.90
1879 4125 0.250081 CGAGGGAAGGCCTTATCTGC 60.250 60.000 20.54 5.12 0.00 4.26
1880 4126 0.839946 GAGGGAAGGCCTTATCTGCA 59.160 55.000 20.54 0.00 0.00 4.41
1881 4127 1.212935 GAGGGAAGGCCTTATCTGCAA 59.787 52.381 20.54 0.00 0.00 4.08
1882 4128 1.640670 AGGGAAGGCCTTATCTGCAAA 59.359 47.619 20.54 0.00 0.00 3.68
1883 4129 2.245806 AGGGAAGGCCTTATCTGCAAAT 59.754 45.455 20.54 0.00 0.00 2.32
1884 4130 2.363359 GGGAAGGCCTTATCTGCAAATG 59.637 50.000 20.54 0.00 0.00 2.32
1885 4131 3.026694 GGAAGGCCTTATCTGCAAATGT 58.973 45.455 20.54 0.00 0.00 2.71
1886 4132 3.181483 GGAAGGCCTTATCTGCAAATGTG 60.181 47.826 20.54 0.00 0.00 3.21
1887 4133 2.381911 AGGCCTTATCTGCAAATGTGG 58.618 47.619 0.00 0.00 0.00 4.17
1888 4134 2.025037 AGGCCTTATCTGCAAATGTGGA 60.025 45.455 0.00 0.00 0.00 4.02
1889 4135 2.360165 GGCCTTATCTGCAAATGTGGAG 59.640 50.000 0.00 0.00 44.23 3.86
1894 4140 2.775911 TCTGCAAATGTGGAGAGGAG 57.224 50.000 2.39 0.00 46.25 3.69
1895 4141 1.980765 TCTGCAAATGTGGAGAGGAGT 59.019 47.619 2.39 0.00 46.25 3.85
1896 4142 2.082231 CTGCAAATGTGGAGAGGAGTG 58.918 52.381 0.00 0.00 45.65 3.51
1897 4143 0.807496 GCAAATGTGGAGAGGAGTGC 59.193 55.000 0.00 0.00 0.00 4.40
1898 4144 1.081892 CAAATGTGGAGAGGAGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
1899 4145 0.036010 AAATGTGGAGAGGAGTGCGG 60.036 55.000 0.00 0.00 0.00 5.69
1900 4146 1.903877 AATGTGGAGAGGAGTGCGGG 61.904 60.000 0.00 0.00 0.00 6.13
1901 4147 2.997897 GTGGAGAGGAGTGCGGGT 60.998 66.667 0.00 0.00 0.00 5.28
1902 4148 1.681327 GTGGAGAGGAGTGCGGGTA 60.681 63.158 0.00 0.00 0.00 3.69
1903 4149 1.077805 TGGAGAGGAGTGCGGGTAA 59.922 57.895 0.00 0.00 0.00 2.85
1904 4150 0.325296 TGGAGAGGAGTGCGGGTAAT 60.325 55.000 0.00 0.00 0.00 1.89
1905 4151 0.831307 GGAGAGGAGTGCGGGTAATT 59.169 55.000 0.00 0.00 0.00 1.40
1906 4152 1.473434 GGAGAGGAGTGCGGGTAATTG 60.473 57.143 0.00 0.00 0.00 2.32
1907 4153 1.207329 GAGAGGAGTGCGGGTAATTGT 59.793 52.381 0.00 0.00 0.00 2.71
1908 4154 1.207329 AGAGGAGTGCGGGTAATTGTC 59.793 52.381 0.00 0.00 0.00 3.18
1909 4155 0.981183 AGGAGTGCGGGTAATTGTCA 59.019 50.000 0.00 0.00 0.00 3.58
1910 4156 1.559682 AGGAGTGCGGGTAATTGTCAT 59.440 47.619 0.00 0.00 0.00 3.06
1911 4157 2.769663 AGGAGTGCGGGTAATTGTCATA 59.230 45.455 0.00 0.00 0.00 2.15
1912 4158 3.131396 GGAGTGCGGGTAATTGTCATAG 58.869 50.000 0.00 0.00 0.00 2.23
1913 4159 3.431766 GGAGTGCGGGTAATTGTCATAGT 60.432 47.826 0.00 0.00 0.00 2.12
1914 4160 4.189231 GAGTGCGGGTAATTGTCATAGTT 58.811 43.478 0.00 0.00 0.00 2.24
1915 4161 4.585879 AGTGCGGGTAATTGTCATAGTTT 58.414 39.130 0.00 0.00 0.00 2.66
1916 4162 4.634443 AGTGCGGGTAATTGTCATAGTTTC 59.366 41.667 0.00 0.00 0.00 2.78
1917 4163 3.942748 TGCGGGTAATTGTCATAGTTTCC 59.057 43.478 0.00 0.00 0.00 3.13
1918 4164 4.196971 GCGGGTAATTGTCATAGTTTCCT 58.803 43.478 0.00 0.00 0.00 3.36
1919 4165 4.638865 GCGGGTAATTGTCATAGTTTCCTT 59.361 41.667 0.00 0.00 0.00 3.36
1920 4166 5.220796 GCGGGTAATTGTCATAGTTTCCTTC 60.221 44.000 0.00 0.00 0.00 3.46
1921 4167 5.296035 CGGGTAATTGTCATAGTTTCCTTCC 59.704 44.000 0.00 0.00 0.00 3.46
1922 4168 6.424032 GGGTAATTGTCATAGTTTCCTTCCT 58.576 40.000 0.00 0.00 0.00 3.36
1923 4169 7.571025 GGGTAATTGTCATAGTTTCCTTCCTA 58.429 38.462 0.00 0.00 0.00 2.94
1924 4170 8.218488 GGGTAATTGTCATAGTTTCCTTCCTAT 58.782 37.037 0.00 0.00 0.00 2.57
1925 4171 9.274206 GGTAATTGTCATAGTTTCCTTCCTATC 57.726 37.037 0.00 0.00 0.00 2.08
1926 4172 9.274206 GTAATTGTCATAGTTTCCTTCCTATCC 57.726 37.037 0.00 0.00 0.00 2.59
1927 4173 5.531122 TGTCATAGTTTCCTTCCTATCCG 57.469 43.478 0.00 0.00 0.00 4.18
1928 4174 4.960469 TGTCATAGTTTCCTTCCTATCCGT 59.040 41.667 0.00 0.00 0.00 4.69
1929 4175 5.424252 TGTCATAGTTTCCTTCCTATCCGTT 59.576 40.000 0.00 0.00 0.00 4.44
1930 4176 6.608405 TGTCATAGTTTCCTTCCTATCCGTTA 59.392 38.462 0.00 0.00 0.00 3.18
1931 4177 7.146648 GTCATAGTTTCCTTCCTATCCGTTAG 58.853 42.308 0.00 0.00 0.00 2.34
1932 4178 7.014038 GTCATAGTTTCCTTCCTATCCGTTAGA 59.986 40.741 0.00 0.00 0.00 2.10
1933 4179 7.728981 TCATAGTTTCCTTCCTATCCGTTAGAT 59.271 37.037 0.00 0.00 39.15 1.98
1934 4180 9.021807 CATAGTTTCCTTCCTATCCGTTAGATA 57.978 37.037 0.00 0.00 36.33 1.98
1935 4181 9.771140 ATAGTTTCCTTCCTATCCGTTAGATAT 57.229 33.333 0.00 0.00 36.84 1.63
1937 4183 9.245481 AGTTTCCTTCCTATCCGTTAGATATAG 57.755 37.037 0.00 0.00 36.84 1.31
1938 4184 9.240734 GTTTCCTTCCTATCCGTTAGATATAGA 57.759 37.037 0.00 0.00 36.84 1.98
1939 4185 9.992442 TTTCCTTCCTATCCGTTAGATATAGAT 57.008 33.333 0.00 0.00 36.84 1.98
1940 4186 9.629878 TTCCTTCCTATCCGTTAGATATAGATC 57.370 37.037 0.00 0.00 36.84 2.75
1941 4187 7.932491 TCCTTCCTATCCGTTAGATATAGATCG 59.068 40.741 0.00 0.00 36.84 3.69
1942 4188 7.173562 CCTTCCTATCCGTTAGATATAGATCGG 59.826 44.444 0.00 0.00 36.84 4.18
1947 4193 3.937874 CGTTAGATATAGATCGGACGGC 58.062 50.000 15.93 0.00 39.49 5.68
1948 4194 3.242673 CGTTAGATATAGATCGGACGGCC 60.243 52.174 15.93 0.00 39.49 6.13
1949 4195 2.810870 AGATATAGATCGGACGGCCT 57.189 50.000 5.33 0.00 37.15 5.19
1950 4196 3.928005 AGATATAGATCGGACGGCCTA 57.072 47.619 5.33 0.00 37.15 3.93
1951 4197 4.440826 AGATATAGATCGGACGGCCTAT 57.559 45.455 5.33 0.00 37.15 2.57
1952 4198 5.563876 AGATATAGATCGGACGGCCTATA 57.436 43.478 5.33 0.25 37.15 1.31
1953 4199 6.129414 AGATATAGATCGGACGGCCTATAT 57.871 41.667 5.33 6.08 37.45 0.86
1954 4200 6.544650 AGATATAGATCGGACGGCCTATATT 58.455 40.000 5.33 0.00 35.87 1.28
1955 4201 4.920640 ATAGATCGGACGGCCTATATTG 57.079 45.455 5.33 0.00 0.00 1.90
1956 4202 1.204941 AGATCGGACGGCCTATATTGC 59.795 52.381 5.33 0.00 0.00 3.56
1957 4203 0.973632 ATCGGACGGCCTATATTGCA 59.026 50.000 5.33 0.00 0.00 4.08
1958 4204 0.317160 TCGGACGGCCTATATTGCAG 59.683 55.000 5.33 0.00 0.00 4.41
1959 4205 0.670546 CGGACGGCCTATATTGCAGG 60.671 60.000 5.33 0.00 36.16 4.85
1960 4206 0.685097 GGACGGCCTATATTGCAGGA 59.315 55.000 0.00 0.00 34.91 3.86
1961 4207 1.279271 GGACGGCCTATATTGCAGGAT 59.721 52.381 0.00 0.00 34.91 3.24
1962 4208 2.350522 GACGGCCTATATTGCAGGATG 58.649 52.381 0.00 0.00 34.91 3.51
1963 4209 1.003580 ACGGCCTATATTGCAGGATGG 59.996 52.381 0.00 0.00 34.91 3.51
1964 4210 1.467920 GGCCTATATTGCAGGATGGC 58.532 55.000 0.00 10.13 34.91 4.40
1965 4211 1.272092 GGCCTATATTGCAGGATGGCA 60.272 52.381 17.22 0.00 43.19 4.92
1966 4212 2.089980 GCCTATATTGCAGGATGGCAG 58.910 52.381 12.68 0.00 45.88 4.85
1967 4213 2.719739 CCTATATTGCAGGATGGCAGG 58.280 52.381 0.00 0.00 45.88 4.85
1968 4214 2.089980 CTATATTGCAGGATGGCAGGC 58.910 52.381 0.00 0.00 45.88 4.85
1969 4215 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.00 45.88 4.75
1970 4216 0.752743 TATTGCAGGATGGCAGGCAC 60.753 55.000 0.00 0.00 45.88 5.01
1971 4217 2.791613 ATTGCAGGATGGCAGGCACA 62.792 55.000 0.00 0.00 45.88 4.57
1972 4218 3.446570 GCAGGATGGCAGGCACAC 61.447 66.667 0.00 0.00 35.86 3.82
1973 4219 2.753043 CAGGATGGCAGGCACACC 60.753 66.667 12.37 12.37 0.00 4.16
1974 4220 3.259314 AGGATGGCAGGCACACCA 61.259 61.111 19.51 0.00 41.01 4.17
1977 4223 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
1978 4224 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
1979 4225 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
1980 4226 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
1981 4227 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
1982 4228 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
1983 4229 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
1984 4230 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
1985 4231 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
1986 4232 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
1987 4233 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
1988 4234 2.877300 GCACACCATCATCACCAACTCT 60.877 50.000 0.00 0.00 0.00 3.24
1989 4235 2.745821 CACACCATCATCACCAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
1990 4236 1.741706 CACCATCATCACCAACTCTGC 59.258 52.381 0.00 0.00 0.00 4.26
1991 4237 1.632409 ACCATCATCACCAACTCTGCT 59.368 47.619 0.00 0.00 0.00 4.24
1992 4238 2.040813 ACCATCATCACCAACTCTGCTT 59.959 45.455 0.00 0.00 0.00 3.91
1993 4239 3.087031 CCATCATCACCAACTCTGCTTT 58.913 45.455 0.00 0.00 0.00 3.51
1994 4240 3.508793 CCATCATCACCAACTCTGCTTTT 59.491 43.478 0.00 0.00 0.00 2.27
1995 4241 4.021719 CCATCATCACCAACTCTGCTTTTT 60.022 41.667 0.00 0.00 0.00 1.94
1996 4242 5.183713 CCATCATCACCAACTCTGCTTTTTA 59.816 40.000 0.00 0.00 0.00 1.52
1997 4243 6.127535 CCATCATCACCAACTCTGCTTTTTAT 60.128 38.462 0.00 0.00 0.00 1.40
1998 4244 7.067372 CCATCATCACCAACTCTGCTTTTTATA 59.933 37.037 0.00 0.00 0.00 0.98
1999 4245 7.994425 TCATCACCAACTCTGCTTTTTATAA 57.006 32.000 0.00 0.00 0.00 0.98
2000 4246 8.044060 TCATCACCAACTCTGCTTTTTATAAG 57.956 34.615 0.00 0.00 0.00 1.73
2001 4247 7.882791 TCATCACCAACTCTGCTTTTTATAAGA 59.117 33.333 0.00 0.00 0.00 2.10
2002 4248 7.672983 TCACCAACTCTGCTTTTTATAAGAG 57.327 36.000 0.00 0.00 41.59 2.85
2004 4250 8.372459 TCACCAACTCTGCTTTTTATAAGAGTA 58.628 33.333 4.72 0.00 46.64 2.59
2005 4251 8.660373 CACCAACTCTGCTTTTTATAAGAGTAG 58.340 37.037 4.72 6.39 46.64 2.57
2006 4252 8.594550 ACCAACTCTGCTTTTTATAAGAGTAGA 58.405 33.333 13.89 13.89 46.64 2.59
2007 4253 9.092876 CCAACTCTGCTTTTTATAAGAGTAGAG 57.907 37.037 26.36 26.36 46.64 2.43
2008 4254 9.862371 CAACTCTGCTTTTTATAAGAGTAGAGA 57.138 33.333 30.41 16.25 46.64 3.10
2035 4281 2.435372 AGTTCTGAGGTGTGCCAAAA 57.565 45.000 0.00 0.00 37.19 2.44
2111 4357 3.004734 TCCTAGCAAAACTGCAAAGCTTC 59.995 43.478 0.00 0.00 36.80 3.86
2501 4749 2.543653 CCAAGTTGGAGAAAAAGCCACG 60.544 50.000 17.60 0.00 40.96 4.94
2542 4790 6.209026 TGATTTAAGCCCCTTTATTCCCAAT 58.791 36.000 0.00 0.00 0.00 3.16
2579 4827 6.073222 GGCGCTAAATGCTAACTATATGTGTT 60.073 38.462 7.64 0.00 40.11 3.32
2846 5094 3.460857 AATGCTATTCCTGGACGTCTC 57.539 47.619 16.46 6.30 0.00 3.36
2934 5182 8.541899 TCTCATGGTGGTTGTATACTTGTATA 57.458 34.615 4.17 0.00 0.00 1.47
3719 6013 7.283127 CACTATTACATGAAAACCAGCATACCT 59.717 37.037 0.00 0.00 0.00 3.08
3864 6165 1.065053 CCCGTGGTTGGGTGATTATCA 60.065 52.381 0.00 0.00 44.76 2.15
3889 6190 9.653287 CAGAAATGTCTGGTTTGTACTATAAGA 57.347 33.333 4.82 0.00 46.55 2.10
3929 6230 3.591196 TGACAAAGTTATTGCCATGGC 57.409 42.857 30.54 30.54 42.35 4.40
4081 6382 4.015872 TGTGTGGATCTACTTCAAACCC 57.984 45.455 10.82 0.00 0.00 4.11
4139 6440 7.916977 TCAATTGCATGCTTCAAGATTATACAC 59.083 33.333 20.33 0.00 0.00 2.90
4193 6494 6.999272 TGGTTACTAAATCTGTTTGGCACTTA 59.001 34.615 0.00 0.00 29.67 2.24
4194 6495 7.040961 TGGTTACTAAATCTGTTTGGCACTTAC 60.041 37.037 0.00 0.00 29.67 2.34
4195 6496 7.174426 GGTTACTAAATCTGTTTGGCACTTACT 59.826 37.037 0.00 0.00 29.67 2.24
4196 6497 8.565416 GTTACTAAATCTGTTTGGCACTTACTT 58.435 33.333 0.00 0.00 29.67 2.24
4335 6636 3.233980 AGCTGCGACTGGGTGACA 61.234 61.111 0.00 0.00 0.00 3.58
4510 6811 1.885887 TCCAATTTACACAGCTGGCAC 59.114 47.619 19.93 0.00 0.00 5.01
4540 6841 6.670695 AGTTTGGTTGCAGGAATTAATTCT 57.329 33.333 23.85 10.29 37.00 2.40
4545 6846 7.716799 TGGTTGCAGGAATTAATTCTATTGT 57.283 32.000 23.85 5.30 37.00 2.71
4551 6852 6.201517 CAGGAATTAATTCTATTGTGTGCCG 58.798 40.000 23.85 0.00 37.00 5.69
4585 6886 1.070601 CACGCCATCCATATGTGAGGA 59.929 52.381 1.24 0.00 38.50 3.71
4704 7005 2.412325 GGTTTCGATTGTAACGTGCAGG 60.412 50.000 4.53 4.53 0.00 4.85
4719 7020 3.370978 CGTGCAGGGTACATTTTCTGTAG 59.629 47.826 0.00 0.00 40.99 2.74
4723 7024 5.186198 GCAGGGTACATTTTCTGTAGATGT 58.814 41.667 0.00 0.00 40.99 3.06
4811 7138 2.869101 TTGGCCAAGTGCATACTGTA 57.131 45.000 16.05 0.00 43.89 2.74
4848 7175 8.657074 TTTTCTGTAAATGATGTATAGTCGGG 57.343 34.615 0.00 0.00 0.00 5.14
4921 7262 2.797792 GCGAGCGATCTCTCACTTGATT 60.798 50.000 12.95 0.00 37.19 2.57
4924 7265 4.328440 CGAGCGATCTCTCACTTGATTTTT 59.672 41.667 12.95 0.00 37.19 1.94
4925 7266 5.499971 CGAGCGATCTCTCACTTGATTTTTC 60.500 44.000 12.95 0.00 37.19 2.29
4957 7298 4.142038 GACGTTCATATTAGGGCCCAAAT 58.858 43.478 27.56 5.74 0.00 2.32
4958 7299 4.542697 ACGTTCATATTAGGGCCCAAATT 58.457 39.130 27.56 5.28 0.00 1.82
4959 7300 4.583073 ACGTTCATATTAGGGCCCAAATTC 59.417 41.667 27.56 3.94 0.00 2.17
4960 7301 4.320202 CGTTCATATTAGGGCCCAAATTCG 60.320 45.833 27.56 12.40 0.00 3.34
4961 7302 3.761897 TCATATTAGGGCCCAAATTCGG 58.238 45.455 27.56 7.79 0.00 4.30
4962 7303 3.139397 TCATATTAGGGCCCAAATTCGGT 59.861 43.478 27.56 2.06 0.00 4.69
4963 7304 2.543037 ATTAGGGCCCAAATTCGGTT 57.457 45.000 27.56 1.16 0.00 4.44
4964 7305 2.312424 TTAGGGCCCAAATTCGGTTT 57.688 45.000 27.56 0.25 0.00 3.27
4965 7306 2.312424 TAGGGCCCAAATTCGGTTTT 57.688 45.000 27.56 0.00 0.00 2.43
4966 7307 0.973632 AGGGCCCAAATTCGGTTTTC 59.026 50.000 27.56 0.00 0.00 2.29
4967 7308 0.389296 GGGCCCAAATTCGGTTTTCG 60.389 55.000 19.95 0.00 40.90 3.46
4968 7309 0.389296 GGCCCAAATTCGGTTTTCGG 60.389 55.000 0.00 0.00 39.77 4.30
4969 7310 1.011968 GCCCAAATTCGGTTTTCGGC 61.012 55.000 4.49 4.49 39.77 5.54
4970 7311 0.389296 CCCAAATTCGGTTTTCGGCC 60.389 55.000 0.00 0.00 39.77 6.13
4976 7317 2.723116 CGGTTTTCGGCCGGTTTT 59.277 55.556 27.83 0.00 44.98 2.43
4977 7318 1.066093 CGGTTTTCGGCCGGTTTTT 59.934 52.632 27.83 0.00 44.98 1.94
5001 7342 4.814234 TGTAAATTAACTGGGCTATCTGCG 59.186 41.667 0.00 0.00 44.05 5.18
5004 7345 0.397957 TAACTGGGCTATCTGCGGGA 60.398 55.000 0.00 0.00 44.05 5.14
5082 7423 9.463443 AATATGATAAAAGCGCTACAAAATTCC 57.537 29.630 12.05 0.00 0.00 3.01
5109 7450 2.811431 TGTGATTGTTGTTGATCCGGAC 59.189 45.455 6.12 0.90 0.00 4.79
5115 7456 1.135199 GTTGTTGATCCGGACGAGCTA 60.135 52.381 6.12 0.00 0.00 3.32
5213 7554 0.531200 GTACCGAGGAAGGTGACAGG 59.469 60.000 0.00 0.00 45.54 4.00
5214 7555 1.255667 TACCGAGGAAGGTGACAGGC 61.256 60.000 0.00 0.00 45.54 4.85
5215 7556 2.286523 CCGAGGAAGGTGACAGGCT 61.287 63.158 0.00 0.00 0.00 4.58
5234 7575 6.206829 ACAGGCTAAATGAACTCAAGGTTAAC 59.793 38.462 0.00 0.00 38.41 2.01
5286 7627 0.447801 CGCTTTTCCAGATGTTCCCG 59.552 55.000 0.00 0.00 0.00 5.14
5304 7646 3.315949 CAAAGTCCCCGGGTCCGA 61.316 66.667 21.85 6.81 42.83 4.55
5307 7649 4.626402 AGTCCCCGGGTCCGAACA 62.626 66.667 21.85 0.00 42.83 3.18
5313 7655 1.614241 CCCGGGTCCGAACAGATTCT 61.614 60.000 14.18 0.00 42.83 2.40
5331 7673 7.828223 ACAGATTCTCAGCTCACTTTTATCAAT 59.172 33.333 0.00 0.00 0.00 2.57
5512 7855 8.122330 TGCAATGTACTTTATAAGATTGCTTCG 58.878 33.333 18.39 0.00 42.29 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.117452 GCATGGCTCCTCTCCCCTG 62.117 68.421 0.00 0.00 0.00 4.45
1 2 2.771762 GCATGGCTCCTCTCCCCT 60.772 66.667 0.00 0.00 0.00 4.79
2 3 3.883549 GGCATGGCTCCTCTCCCC 61.884 72.222 12.86 0.00 0.00 4.81
3 4 2.771762 AGGCATGGCTCCTCTCCC 60.772 66.667 17.44 0.00 0.00 4.30
4 5 2.828145 GAGGCATGGCTCCTCTCC 59.172 66.667 33.27 12.41 45.13 3.71
8 9 0.400237 AGATCTGAGGCATGGCTCCT 60.400 55.000 37.66 26.98 36.46 3.69
9 10 0.250381 CAGATCTGAGGCATGGCTCC 60.250 60.000 37.66 25.45 0.00 4.70
10 11 0.757512 TCAGATCTGAGGCATGGCTC 59.242 55.000 35.60 35.60 34.14 4.70
11 12 0.469070 GTCAGATCTGAGGCATGGCT 59.531 55.000 25.76 23.58 40.75 4.75
12 13 0.879400 CGTCAGATCTGAGGCATGGC 60.879 60.000 27.27 12.14 40.75 4.40
13 14 0.749049 TCGTCAGATCTGAGGCATGG 59.251 55.000 31.46 15.58 43.08 3.66
14 15 1.269673 CCTCGTCAGATCTGAGGCATG 60.270 57.143 31.46 23.78 42.53 4.06
15 16 1.039068 CCTCGTCAGATCTGAGGCAT 58.961 55.000 31.46 0.00 42.53 4.40
16 17 2.498077 CCTCGTCAGATCTGAGGCA 58.502 57.895 31.46 21.66 42.53 4.75
19 20 1.317613 CCCTCCTCGTCAGATCTGAG 58.682 60.000 25.76 18.32 40.75 3.35
20 21 0.106469 CCCCTCCTCGTCAGATCTGA 60.106 60.000 21.67 21.67 37.24 3.27
21 22 0.106469 TCCCCTCCTCGTCAGATCTG 60.106 60.000 17.07 17.07 0.00 2.90
22 23 0.631753 TTCCCCTCCTCGTCAGATCT 59.368 55.000 0.00 0.00 0.00 2.75
23 24 1.036707 CTTCCCCTCCTCGTCAGATC 58.963 60.000 0.00 0.00 0.00 2.75
24 25 0.631753 TCTTCCCCTCCTCGTCAGAT 59.368 55.000 0.00 0.00 0.00 2.90
25 26 0.323542 GTCTTCCCCTCCTCGTCAGA 60.324 60.000 0.00 0.00 0.00 3.27
26 27 1.324005 GGTCTTCCCCTCCTCGTCAG 61.324 65.000 0.00 0.00 0.00 3.51
27 28 1.305046 GGTCTTCCCCTCCTCGTCA 60.305 63.158 0.00 0.00 0.00 4.35
28 29 1.000612 AGGTCTTCCCCTCCTCGTC 59.999 63.158 0.00 0.00 0.00 4.20
29 30 1.000612 GAGGTCTTCCCCTCCTCGT 59.999 63.158 0.00 0.00 44.49 4.18
30 31 3.942601 GAGGTCTTCCCCTCCTCG 58.057 66.667 0.00 0.00 44.49 4.63
96 97 4.373116 TGTTCTCTGGCCGGCGAC 62.373 66.667 22.54 8.26 0.00 5.19
97 98 4.373116 GTGTTCTCTGGCCGGCGA 62.373 66.667 22.54 17.25 0.00 5.54
100 101 4.760047 CGGGTGTTCTCTGGCCGG 62.760 72.222 4.71 4.71 0.00 6.13
104 105 3.019003 ATCCGCGGGTGTTCTCTGG 62.019 63.158 27.83 0.00 0.00 3.86
105 106 1.811266 CATCCGCGGGTGTTCTCTG 60.811 63.158 30.46 2.12 0.00 3.35
106 107 1.982395 TCATCCGCGGGTGTTCTCT 60.982 57.895 35.86 3.59 0.00 3.10
107 108 1.810030 GTCATCCGCGGGTGTTCTC 60.810 63.158 35.86 20.82 0.00 2.87
108 109 2.264794 GTCATCCGCGGGTGTTCT 59.735 61.111 35.86 6.85 0.00 3.01
109 110 3.186047 CGTCATCCGCGGGTGTTC 61.186 66.667 35.86 26.95 0.00 3.18
119 120 3.157217 ATCTCGGCTGGCGTCATCC 62.157 63.158 23.07 0.00 0.00 3.51
120 121 1.953138 CATCTCGGCTGGCGTCATC 60.953 63.158 23.07 0.00 0.00 2.92
121 122 2.107750 CATCTCGGCTGGCGTCAT 59.892 61.111 23.07 13.02 0.00 3.06
122 123 4.147449 CCATCTCGGCTGGCGTCA 62.147 66.667 23.07 11.26 0.00 4.35
605 607 0.815734 GCTTCAATGCATCTGCCTGT 59.184 50.000 0.00 0.00 41.18 4.00
656 658 4.261801 CGGTTTGATAGTTGGAAGGTCAT 58.738 43.478 0.00 0.00 0.00 3.06
677 679 1.363744 GAGATCTGGCTGTTTGACCG 58.636 55.000 0.00 0.00 0.00 4.79
681 2079 1.699656 CCGCGAGATCTGGCTGTTTG 61.700 60.000 24.73 10.65 31.84 2.93
897 3132 3.670377 GTTTGGGCTGGTCCACGC 61.670 66.667 0.00 5.10 36.38 5.34
898 3133 1.388065 TTTGTTTGGGCTGGTCCACG 61.388 55.000 0.00 0.00 36.38 4.94
911 3146 2.052782 AGCTCGAGGTTGGTTTGTTT 57.947 45.000 12.24 0.00 0.00 2.83
985 3220 0.329261 CTCATGAAGGCACAAGGGGA 59.671 55.000 0.00 0.00 0.00 4.81
986 3221 0.329261 TCTCATGAAGGCACAAGGGG 59.671 55.000 0.00 0.00 0.00 4.79
1311 3548 6.204882 AGCTATATTTTTACGATCCACCTTGC 59.795 38.462 0.00 0.00 0.00 4.01
1370 3608 2.887337 TCGCATAGCATCGAAGTTCAA 58.113 42.857 3.32 0.00 0.00 2.69
1391 3629 1.599518 CAGCACACGCCAAACCCTA 60.600 57.895 0.00 0.00 39.83 3.53
1406 3644 1.394917 CTGCACACCTTATTCGACAGC 59.605 52.381 0.00 0.00 0.00 4.40
1423 3661 2.678336 GGAGTACTACAAATGGCACTGC 59.322 50.000 0.00 0.00 0.00 4.40
1429 3667 2.764572 ACGGAGGGAGTACTACAAATGG 59.235 50.000 7.57 0.00 0.00 3.16
1473 3711 1.338960 TGCCGATGAAATGAGCACTCA 60.339 47.619 2.25 2.25 44.59 3.41
1516 3754 3.170791 ACACATCTAATCCAGACAGCG 57.829 47.619 0.00 0.00 35.62 5.18
1608 3854 1.888512 GCACACACAGTCCATTCCATT 59.111 47.619 0.00 0.00 0.00 3.16
1636 3882 3.507233 AGAAAACATTGACGCCATCATGT 59.493 39.130 0.00 0.00 37.11 3.21
1754 4000 6.491745 TGACCATAAAAGGCAATACAACTTCA 59.508 34.615 0.00 0.00 0.00 3.02
1780 4026 2.528743 CGCACGGGCATCTTGCTAG 61.529 63.158 11.77 0.00 44.28 3.42
1781 4027 2.511373 CGCACGGGCATCTTGCTA 60.511 61.111 11.77 0.00 44.28 3.49
1782 4028 4.704833 ACGCACGGGCATCTTGCT 62.705 61.111 11.77 0.00 44.28 3.91
1783 4029 3.737172 AACGCACGGGCATCTTGC 61.737 61.111 11.77 0.00 44.08 4.01
1784 4030 2.176546 CAACGCACGGGCATCTTG 59.823 61.111 11.77 3.62 41.24 3.02
1785 4031 3.737172 GCAACGCACGGGCATCTT 61.737 61.111 11.77 0.00 41.24 2.40
1798 4044 2.855180 CATCTTGATGTTCCGTGCAAC 58.145 47.619 0.00 0.00 0.00 4.17
1799 4045 1.199789 GCATCTTGATGTTCCGTGCAA 59.800 47.619 11.61 0.00 0.00 4.08
1800 4046 0.804364 GCATCTTGATGTTCCGTGCA 59.196 50.000 11.61 0.00 0.00 4.57
1801 4047 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
1802 4048 3.770263 AATGCATCTTGATGTTCCGTG 57.230 42.857 0.00 0.00 0.00 4.94
1803 4049 3.507233 ACAAATGCATCTTGATGTTCCGT 59.493 39.130 20.96 2.07 0.00 4.69
1804 4050 4.100707 ACAAATGCATCTTGATGTTCCG 57.899 40.909 20.96 1.56 0.00 4.30
1805 4051 6.798482 TCATACAAATGCATCTTGATGTTCC 58.202 36.000 20.96 0.00 32.76 3.62
1806 4052 7.478322 ACTCATACAAATGCATCTTGATGTTC 58.522 34.615 20.96 0.00 32.76 3.18
1807 4053 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
1808 4054 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
1809 4055 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
1810 4056 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
1811 4057 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
1817 4063 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
1818 4064 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
1820 4066 9.396022 CCCACAAGATAAACTACTCATACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
1821 4067 8.598916 TCCCACAAGATAAACTACTCATACAAA 58.401 33.333 0.00 0.00 0.00 2.83
1822 4068 8.141298 TCCCACAAGATAAACTACTCATACAA 57.859 34.615 0.00 0.00 0.00 2.41
1823 4069 7.618117 TCTCCCACAAGATAAACTACTCATACA 59.382 37.037 0.00 0.00 0.00 2.29
1824 4070 8.008513 TCTCCCACAAGATAAACTACTCATAC 57.991 38.462 0.00 0.00 0.00 2.39
1825 4071 8.603898 TTCTCCCACAAGATAAACTACTCATA 57.396 34.615 0.00 0.00 0.00 2.15
1826 4072 7.496346 TTCTCCCACAAGATAAACTACTCAT 57.504 36.000 0.00 0.00 0.00 2.90
1827 4073 6.928348 TTCTCCCACAAGATAAACTACTCA 57.072 37.500 0.00 0.00 0.00 3.41
1828 4074 7.334671 CCTTTTCTCCCACAAGATAAACTACTC 59.665 40.741 0.00 0.00 0.00 2.59
1829 4075 7.017254 TCCTTTTCTCCCACAAGATAAACTACT 59.983 37.037 0.00 0.00 0.00 2.57
1830 4076 7.166167 TCCTTTTCTCCCACAAGATAAACTAC 58.834 38.462 0.00 0.00 0.00 2.73
1831 4077 7.324388 TCCTTTTCTCCCACAAGATAAACTA 57.676 36.000 0.00 0.00 0.00 2.24
1832 4078 6.200878 TCCTTTTCTCCCACAAGATAAACT 57.799 37.500 0.00 0.00 0.00 2.66
1833 4079 6.659242 TCATCCTTTTCTCCCACAAGATAAAC 59.341 38.462 0.00 0.00 0.00 2.01
1834 4080 6.789268 TCATCCTTTTCTCCCACAAGATAAA 58.211 36.000 0.00 0.00 0.00 1.40
1835 4081 6.387192 TCATCCTTTTCTCCCACAAGATAA 57.613 37.500 0.00 0.00 0.00 1.75
1836 4082 6.180472 GTTCATCCTTTTCTCCCACAAGATA 58.820 40.000 0.00 0.00 0.00 1.98
1837 4083 4.934797 TCATCCTTTTCTCCCACAAGAT 57.065 40.909 0.00 0.00 0.00 2.40
1838 4084 4.398319 GTTCATCCTTTTCTCCCACAAGA 58.602 43.478 0.00 0.00 0.00 3.02
1839 4085 3.189287 CGTTCATCCTTTTCTCCCACAAG 59.811 47.826 0.00 0.00 0.00 3.16
1840 4086 3.146066 CGTTCATCCTTTTCTCCCACAA 58.854 45.455 0.00 0.00 0.00 3.33
1841 4087 2.370519 TCGTTCATCCTTTTCTCCCACA 59.629 45.455 0.00 0.00 0.00 4.17
1842 4088 3.003480 CTCGTTCATCCTTTTCTCCCAC 58.997 50.000 0.00 0.00 0.00 4.61
1843 4089 2.027192 CCTCGTTCATCCTTTTCTCCCA 60.027 50.000 0.00 0.00 0.00 4.37
1844 4090 2.633488 CCTCGTTCATCCTTTTCTCCC 58.367 52.381 0.00 0.00 0.00 4.30
1845 4091 2.236395 TCCCTCGTTCATCCTTTTCTCC 59.764 50.000 0.00 0.00 0.00 3.71
1846 4092 3.611766 TCCCTCGTTCATCCTTTTCTC 57.388 47.619 0.00 0.00 0.00 2.87
1847 4093 3.307762 CCTTCCCTCGTTCATCCTTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
1848 4094 3.010420 CCTTCCCTCGTTCATCCTTTTC 58.990 50.000 0.00 0.00 0.00 2.29
1849 4095 2.880167 GCCTTCCCTCGTTCATCCTTTT 60.880 50.000 0.00 0.00 0.00 2.27
1850 4096 1.340114 GCCTTCCCTCGTTCATCCTTT 60.340 52.381 0.00 0.00 0.00 3.11
1851 4097 0.253327 GCCTTCCCTCGTTCATCCTT 59.747 55.000 0.00 0.00 0.00 3.36
1852 4098 1.627297 GGCCTTCCCTCGTTCATCCT 61.627 60.000 0.00 0.00 0.00 3.24
1853 4099 1.153147 GGCCTTCCCTCGTTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
1854 4100 0.253327 AAGGCCTTCCCTCGTTCATC 59.747 55.000 13.78 0.00 45.62 2.92
1855 4101 1.580059 TAAGGCCTTCCCTCGTTCAT 58.420 50.000 24.49 0.00 45.62 2.57
1856 4102 1.485066 GATAAGGCCTTCCCTCGTTCA 59.515 52.381 24.49 0.18 45.62 3.18
1857 4103 1.763545 AGATAAGGCCTTCCCTCGTTC 59.236 52.381 24.49 8.68 45.62 3.95
1858 4104 1.486726 CAGATAAGGCCTTCCCTCGTT 59.513 52.381 24.49 0.00 45.62 3.85
1859 4105 1.123928 CAGATAAGGCCTTCCCTCGT 58.876 55.000 24.49 0.00 45.62 4.18
1860 4106 0.250081 GCAGATAAGGCCTTCCCTCG 60.250 60.000 24.49 14.56 45.62 4.63
1861 4107 0.839946 TGCAGATAAGGCCTTCCCTC 59.160 55.000 24.49 17.06 45.62 4.30
1863 4109 2.143876 TTTGCAGATAAGGCCTTCCC 57.856 50.000 24.49 15.04 0.00 3.97
1864 4110 3.026694 ACATTTGCAGATAAGGCCTTCC 58.973 45.455 24.49 15.44 0.00 3.46
1865 4111 3.181483 CCACATTTGCAGATAAGGCCTTC 60.181 47.826 24.49 9.18 0.00 3.46
1866 4112 2.762327 CCACATTTGCAGATAAGGCCTT 59.238 45.455 24.18 24.18 0.00 4.35
1867 4113 2.025037 TCCACATTTGCAGATAAGGCCT 60.025 45.455 0.00 0.00 0.00 5.19
1868 4114 2.360165 CTCCACATTTGCAGATAAGGCC 59.640 50.000 0.00 0.00 0.00 5.19
1869 4115 3.282021 TCTCCACATTTGCAGATAAGGC 58.718 45.455 0.00 0.00 0.00 4.35
1870 4116 3.881688 CCTCTCCACATTTGCAGATAAGG 59.118 47.826 0.00 0.00 0.00 2.69
1871 4117 4.774124 TCCTCTCCACATTTGCAGATAAG 58.226 43.478 0.00 0.00 0.00 1.73
1872 4118 4.225942 ACTCCTCTCCACATTTGCAGATAA 59.774 41.667 0.00 0.00 0.00 1.75
1873 4119 3.776969 ACTCCTCTCCACATTTGCAGATA 59.223 43.478 0.00 0.00 0.00 1.98
1874 4120 2.575279 ACTCCTCTCCACATTTGCAGAT 59.425 45.455 0.00 0.00 0.00 2.90
1875 4121 1.980765 ACTCCTCTCCACATTTGCAGA 59.019 47.619 0.00 0.00 0.00 4.26
1876 4122 2.082231 CACTCCTCTCCACATTTGCAG 58.918 52.381 0.00 0.00 0.00 4.41
1877 4123 1.883638 GCACTCCTCTCCACATTTGCA 60.884 52.381 0.00 0.00 0.00 4.08
1878 4124 0.807496 GCACTCCTCTCCACATTTGC 59.193 55.000 0.00 0.00 0.00 3.68
1879 4125 1.081892 CGCACTCCTCTCCACATTTG 58.918 55.000 0.00 0.00 0.00 2.32
1880 4126 0.036010 CCGCACTCCTCTCCACATTT 60.036 55.000 0.00 0.00 0.00 2.32
1881 4127 1.599047 CCGCACTCCTCTCCACATT 59.401 57.895 0.00 0.00 0.00 2.71
1882 4128 2.362369 CCCGCACTCCTCTCCACAT 61.362 63.158 0.00 0.00 0.00 3.21
1883 4129 2.435120 TACCCGCACTCCTCTCCACA 62.435 60.000 0.00 0.00 0.00 4.17
1884 4130 1.255667 TTACCCGCACTCCTCTCCAC 61.256 60.000 0.00 0.00 0.00 4.02
1885 4131 0.325296 ATTACCCGCACTCCTCTCCA 60.325 55.000 0.00 0.00 0.00 3.86
1886 4132 0.831307 AATTACCCGCACTCCTCTCC 59.169 55.000 0.00 0.00 0.00 3.71
1887 4133 1.207329 ACAATTACCCGCACTCCTCTC 59.793 52.381 0.00 0.00 0.00 3.20
1888 4134 1.207329 GACAATTACCCGCACTCCTCT 59.793 52.381 0.00 0.00 0.00 3.69
1889 4135 1.066430 TGACAATTACCCGCACTCCTC 60.066 52.381 0.00 0.00 0.00 3.71
1890 4136 0.981183 TGACAATTACCCGCACTCCT 59.019 50.000 0.00 0.00 0.00 3.69
1891 4137 2.038387 ATGACAATTACCCGCACTCC 57.962 50.000 0.00 0.00 0.00 3.85
1892 4138 3.793559 ACTATGACAATTACCCGCACTC 58.206 45.455 0.00 0.00 0.00 3.51
1893 4139 3.906720 ACTATGACAATTACCCGCACT 57.093 42.857 0.00 0.00 0.00 4.40
1894 4140 4.201881 GGAAACTATGACAATTACCCGCAC 60.202 45.833 0.00 0.00 0.00 5.34
1895 4141 3.942748 GGAAACTATGACAATTACCCGCA 59.057 43.478 0.00 0.00 0.00 5.69
1896 4142 4.196971 AGGAAACTATGACAATTACCCGC 58.803 43.478 0.00 0.00 40.61 6.13
1897 4143 5.296035 GGAAGGAAACTATGACAATTACCCG 59.704 44.000 0.00 0.00 42.68 5.28
1898 4144 6.424032 AGGAAGGAAACTATGACAATTACCC 58.576 40.000 0.00 0.00 42.68 3.69
1899 4145 9.274206 GATAGGAAGGAAACTATGACAATTACC 57.726 37.037 0.00 0.00 42.68 2.85
1900 4146 9.274206 GGATAGGAAGGAAACTATGACAATTAC 57.726 37.037 0.00 0.00 42.68 1.89
1901 4147 8.148351 CGGATAGGAAGGAAACTATGACAATTA 58.852 37.037 0.00 0.00 42.68 1.40
1902 4148 6.992715 CGGATAGGAAGGAAACTATGACAATT 59.007 38.462 0.00 0.00 42.68 2.32
1903 4149 6.099845 ACGGATAGGAAGGAAACTATGACAAT 59.900 38.462 0.00 0.00 42.68 2.71
1904 4150 5.424252 ACGGATAGGAAGGAAACTATGACAA 59.576 40.000 0.00 0.00 42.68 3.18
1905 4151 4.960469 ACGGATAGGAAGGAAACTATGACA 59.040 41.667 0.00 0.00 42.68 3.58
1906 4152 5.532664 ACGGATAGGAAGGAAACTATGAC 57.467 43.478 0.00 0.00 42.68 3.06
1907 4153 7.064866 TCTAACGGATAGGAAGGAAACTATGA 58.935 38.462 0.00 0.00 33.58 2.15
1908 4154 7.286215 TCTAACGGATAGGAAGGAAACTATG 57.714 40.000 0.00 0.00 33.58 2.23
1909 4155 9.771140 ATATCTAACGGATAGGAAGGAAACTAT 57.229 33.333 0.00 0.00 39.04 2.12
1911 4157 9.245481 CTATATCTAACGGATAGGAAGGAAACT 57.755 37.037 0.00 0.00 40.65 2.66
1912 4158 9.240734 TCTATATCTAACGGATAGGAAGGAAAC 57.759 37.037 0.00 0.00 39.89 2.78
1913 4159 9.992442 ATCTATATCTAACGGATAGGAAGGAAA 57.008 33.333 0.00 0.00 39.89 3.13
1914 4160 9.629878 GATCTATATCTAACGGATAGGAAGGAA 57.370 37.037 0.00 0.00 39.89 3.36
1915 4161 7.932491 CGATCTATATCTAACGGATAGGAAGGA 59.068 40.741 0.00 0.00 39.89 3.36
1916 4162 7.173562 CCGATCTATATCTAACGGATAGGAAGG 59.826 44.444 0.00 0.00 42.40 3.46
1917 4163 7.932491 TCCGATCTATATCTAACGGATAGGAAG 59.068 40.741 0.00 0.00 43.30 3.46
1918 4164 7.799081 TCCGATCTATATCTAACGGATAGGAA 58.201 38.462 0.00 0.00 43.30 3.36
1919 4165 7.370905 TCCGATCTATATCTAACGGATAGGA 57.629 40.000 0.00 0.00 43.30 2.94
1925 4171 4.533225 CCGTCCGATCTATATCTAACGG 57.467 50.000 13.15 13.15 44.34 4.44
1926 4172 3.242673 GGCCGTCCGATCTATATCTAACG 60.243 52.174 0.00 5.63 37.40 3.18
1927 4173 3.946558 AGGCCGTCCGATCTATATCTAAC 59.053 47.826 0.00 0.00 37.47 2.34
1928 4174 4.232188 AGGCCGTCCGATCTATATCTAA 57.768 45.455 0.00 0.00 37.47 2.10
1929 4175 3.928005 AGGCCGTCCGATCTATATCTA 57.072 47.619 0.00 0.00 37.47 1.98
1930 4176 2.810870 AGGCCGTCCGATCTATATCT 57.189 50.000 0.00 0.00 37.47 1.98
1931 4177 6.613233 CAATATAGGCCGTCCGATCTATATC 58.387 44.000 15.29 0.00 35.53 1.63
1932 4178 5.047943 GCAATATAGGCCGTCCGATCTATAT 60.048 44.000 0.00 11.98 37.13 0.86
1933 4179 4.277672 GCAATATAGGCCGTCCGATCTATA 59.722 45.833 0.00 9.58 37.47 1.31
1934 4180 3.068307 GCAATATAGGCCGTCCGATCTAT 59.932 47.826 0.00 0.00 37.47 1.98
1935 4181 2.426024 GCAATATAGGCCGTCCGATCTA 59.574 50.000 0.00 0.00 37.47 1.98
1936 4182 1.204941 GCAATATAGGCCGTCCGATCT 59.795 52.381 0.00 0.00 37.47 2.75
1937 4183 1.067142 TGCAATATAGGCCGTCCGATC 60.067 52.381 0.00 0.00 37.47 3.69
1938 4184 0.973632 TGCAATATAGGCCGTCCGAT 59.026 50.000 0.00 0.00 37.47 4.18
1939 4185 0.317160 CTGCAATATAGGCCGTCCGA 59.683 55.000 0.00 0.00 37.47 4.55
1940 4186 0.670546 CCTGCAATATAGGCCGTCCG 60.671 60.000 0.00 0.00 37.47 4.79
1941 4187 0.685097 TCCTGCAATATAGGCCGTCC 59.315 55.000 0.00 0.00 35.23 4.79
1942 4188 2.350522 CATCCTGCAATATAGGCCGTC 58.649 52.381 0.00 0.00 35.23 4.79
1943 4189 1.003580 CCATCCTGCAATATAGGCCGT 59.996 52.381 0.00 0.00 35.23 5.68
1944 4190 1.742761 CCATCCTGCAATATAGGCCG 58.257 55.000 0.00 0.00 35.23 6.13
1945 4191 1.272092 TGCCATCCTGCAATATAGGCC 60.272 52.381 12.50 0.00 38.56 5.19
1946 4192 2.089980 CTGCCATCCTGCAATATAGGC 58.910 52.381 9.23 9.23 41.51 3.93
1947 4193 2.719739 CCTGCCATCCTGCAATATAGG 58.280 52.381 0.00 0.00 41.51 2.57
1948 4194 2.089980 GCCTGCCATCCTGCAATATAG 58.910 52.381 0.00 0.00 41.51 1.31
1949 4195 1.424684 TGCCTGCCATCCTGCAATATA 59.575 47.619 0.00 0.00 41.51 0.86
1950 4196 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.00 41.51 1.28
1951 4197 0.752743 GTGCCTGCCATCCTGCAATA 60.753 55.000 0.00 0.00 41.51 1.90
1952 4198 2.056223 GTGCCTGCCATCCTGCAAT 61.056 57.895 0.00 0.00 41.51 3.56
1953 4199 2.677524 GTGCCTGCCATCCTGCAA 60.678 61.111 0.00 0.00 41.51 4.08
1954 4200 3.969119 TGTGCCTGCCATCCTGCA 61.969 61.111 0.00 0.00 39.37 4.41
1955 4201 3.446570 GTGTGCCTGCCATCCTGC 61.447 66.667 0.00 0.00 0.00 4.85
1956 4202 2.753043 GGTGTGCCTGCCATCCTG 60.753 66.667 0.00 0.00 0.00 3.86
1957 4203 2.619446 ATGGTGTGCCTGCCATCCT 61.619 57.895 0.00 0.00 41.24 3.24
1958 4204 2.043652 ATGGTGTGCCTGCCATCC 60.044 61.111 0.00 0.00 41.24 3.51
1961 4207 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
1962 4208 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
1963 4209 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
1964 4210 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
1965 4211 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
1966 4212 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
1967 4213 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
1968 4214 2.745821 CAGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
1969 4215 2.877300 GCAGAGTTGGTGATGATGGTGT 60.877 50.000 0.00 0.00 0.00 4.16
1970 4216 1.741706 GCAGAGTTGGTGATGATGGTG 59.258 52.381 0.00 0.00 0.00 4.17
1971 4217 1.632409 AGCAGAGTTGGTGATGATGGT 59.368 47.619 0.00 0.00 32.86 3.55
1972 4218 2.414994 AGCAGAGTTGGTGATGATGG 57.585 50.000 0.00 0.00 32.86 3.51
1973 4219 4.778534 AAAAGCAGAGTTGGTGATGATG 57.221 40.909 0.00 0.00 34.72 3.07
1974 4220 8.579850 TTATAAAAAGCAGAGTTGGTGATGAT 57.420 30.769 0.00 0.00 34.72 2.45
1975 4221 7.882791 TCTTATAAAAAGCAGAGTTGGTGATGA 59.117 33.333 0.00 0.00 34.72 2.92
1976 4222 8.044060 TCTTATAAAAAGCAGAGTTGGTGATG 57.956 34.615 0.00 0.00 34.72 3.07
1977 4223 7.885399 ACTCTTATAAAAAGCAGAGTTGGTGAT 59.115 33.333 0.00 0.00 42.79 3.06
1978 4224 7.224297 ACTCTTATAAAAAGCAGAGTTGGTGA 58.776 34.615 0.00 0.00 42.79 4.02
1979 4225 7.440523 ACTCTTATAAAAAGCAGAGTTGGTG 57.559 36.000 0.00 0.00 42.79 4.17
1980 4226 8.594550 TCTACTCTTATAAAAAGCAGAGTTGGT 58.405 33.333 7.61 0.00 42.79 3.67
1981 4227 9.092876 CTCTACTCTTATAAAAAGCAGAGTTGG 57.907 37.037 7.61 3.42 42.79 3.77
1982 4228 9.862371 TCTCTACTCTTATAAAAAGCAGAGTTG 57.138 33.333 16.88 11.79 42.79 3.16
1999 4245 8.966868 CCTCAGAACTAAAAGAATCTCTACTCT 58.033 37.037 0.00 0.00 0.00 3.24
2000 4246 8.745590 ACCTCAGAACTAAAAGAATCTCTACTC 58.254 37.037 0.00 0.00 0.00 2.59
2001 4247 8.527810 CACCTCAGAACTAAAAGAATCTCTACT 58.472 37.037 0.00 0.00 0.00 2.57
2002 4248 8.308207 ACACCTCAGAACTAAAAGAATCTCTAC 58.692 37.037 0.00 0.00 0.00 2.59
2003 4249 8.307483 CACACCTCAGAACTAAAAGAATCTCTA 58.693 37.037 0.00 0.00 0.00 2.43
2004 4250 7.158021 CACACCTCAGAACTAAAAGAATCTCT 58.842 38.462 0.00 0.00 0.00 3.10
2005 4251 6.128418 GCACACCTCAGAACTAAAAGAATCTC 60.128 42.308 0.00 0.00 0.00 2.75
2006 4252 5.703130 GCACACCTCAGAACTAAAAGAATCT 59.297 40.000 0.00 0.00 0.00 2.40
2007 4253 5.106515 GGCACACCTCAGAACTAAAAGAATC 60.107 44.000 0.00 0.00 0.00 2.52
2008 4254 4.762251 GGCACACCTCAGAACTAAAAGAAT 59.238 41.667 0.00 0.00 0.00 2.40
2035 4281 3.424703 CTGTCCAATGTCTCCAACCAAT 58.575 45.455 0.00 0.00 0.00 3.16
2111 4357 5.981915 CCAAGCAAAAGGAAAAGAAAGAGAG 59.018 40.000 0.00 0.00 0.00 3.20
2160 4406 8.340618 ACTGTCATTGCTACAATTGAAGTATT 57.659 30.769 13.59 0.00 0.00 1.89
2161 4407 7.928307 ACTGTCATTGCTACAATTGAAGTAT 57.072 32.000 13.59 0.00 0.00 2.12
2177 4423 4.298626 TCCCAGCCTCTATAACTGTCATT 58.701 43.478 0.00 0.00 0.00 2.57
2349 4596 3.016736 ACAAGGCTAACATGCATACACC 58.983 45.455 0.00 0.00 34.04 4.16
2542 4790 0.315886 TTAGCGCCGTGACTTGAGAA 59.684 50.000 2.29 0.00 0.00 2.87
2579 4827 7.737972 TTTAACATTCAGCAGCACTAAACTA 57.262 32.000 0.00 0.00 0.00 2.24
2730 4978 2.647299 TGCACCCTCCCATCTAAAAAGA 59.353 45.455 0.00 0.00 0.00 2.52
2846 5094 7.414873 GCATTATCTATGTGATTGCCACCATAG 60.415 40.741 0.00 0.00 45.09 2.23
3382 5671 4.864334 GCGGGCAGAGGATGTGGG 62.864 72.222 0.00 0.00 0.00 4.61
3719 6013 3.998913 TCATTTCTGCACATGTCCCTA 57.001 42.857 0.00 0.00 0.00 3.53
3765 6066 6.708502 TGTCGAAGGAACAGAAATACAATGAA 59.291 34.615 0.00 0.00 0.00 2.57
3886 6187 7.385205 GTCATACGGTGCATGTATCTTAATCTT 59.615 37.037 10.59 0.00 30.28 2.40
3887 6188 6.868864 GTCATACGGTGCATGTATCTTAATCT 59.131 38.462 10.59 0.00 30.28 2.40
3888 6189 6.645003 TGTCATACGGTGCATGTATCTTAATC 59.355 38.462 10.59 2.01 30.28 1.75
3889 6190 6.521162 TGTCATACGGTGCATGTATCTTAAT 58.479 36.000 10.59 0.00 30.28 1.40
3890 6191 5.908341 TGTCATACGGTGCATGTATCTTAA 58.092 37.500 10.59 0.00 30.28 1.85
3891 6192 5.523438 TGTCATACGGTGCATGTATCTTA 57.477 39.130 10.59 0.00 30.28 2.10
3929 6230 0.951558 GGTTGTGTGCCCTAAGTGTG 59.048 55.000 0.00 0.00 0.00 3.82
4081 6382 1.277739 CTGTGTGTGTCAGCTTGCG 59.722 57.895 0.00 0.00 0.00 4.85
4193 6494 6.991938 TGCATAGCCAAAGAAACATTTAAGT 58.008 32.000 0.00 0.00 0.00 2.24
4194 6495 6.532657 CCTGCATAGCCAAAGAAACATTTAAG 59.467 38.462 0.00 0.00 0.00 1.85
4195 6496 6.210385 TCCTGCATAGCCAAAGAAACATTTAA 59.790 34.615 0.00 0.00 0.00 1.52
4196 6497 5.714333 TCCTGCATAGCCAAAGAAACATTTA 59.286 36.000 0.00 0.00 0.00 1.40
4335 6636 3.614092 CAATGAAGGCTGTATGTCCAGT 58.386 45.455 0.00 0.00 34.84 4.00
4473 6774 1.134220 TGGACACCGCTCTTGTTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
4510 6811 3.942829 TCCTGCAACCAAACTAGATCTG 58.057 45.455 5.18 0.00 0.00 2.90
4540 6841 1.539157 TGAAATGCCGGCACACAATA 58.461 45.000 35.50 13.73 0.00 1.90
4545 6846 1.594194 GGTCATGAAATGCCGGCACA 61.594 55.000 35.50 26.28 46.21 4.57
4551 6852 1.139520 GCGTGGGTCATGAAATGCC 59.860 57.895 0.00 0.00 46.21 4.40
4585 6886 7.893302 TGTGAAAGGATCTTACAAACCCATTAT 59.107 33.333 0.00 0.00 0.00 1.28
4846 7173 4.899352 AGACTACCAGATTATCATGCCC 57.101 45.455 0.00 0.00 0.00 5.36
4848 7175 6.279513 AGCTAGACTACCAGATTATCATGC 57.720 41.667 0.00 0.00 0.00 4.06
4888 7229 2.939022 GCTCGCTGTCGCAAAACT 59.061 55.556 0.00 0.00 35.30 2.66
4900 7241 0.099613 TCAAGTGAGAGATCGCTCGC 59.900 55.000 26.73 26.73 45.98 5.03
4901 7242 2.772568 ATCAAGTGAGAGATCGCTCG 57.227 50.000 19.76 7.26 45.98 5.03
4902 7243 5.580297 AGAAAAATCAAGTGAGAGATCGCTC 59.420 40.000 18.55 18.55 41.62 5.03
4921 7262 4.145365 TGAACGTCAGAGGGAAAGAAAA 57.855 40.909 0.00 0.00 0.00 2.29
4924 7265 5.677319 AATATGAACGTCAGAGGGAAAGA 57.323 39.130 0.00 0.00 0.00 2.52
4925 7266 5.986135 CCTAATATGAACGTCAGAGGGAAAG 59.014 44.000 0.00 0.00 0.00 2.62
4974 7315 8.032451 GCAGATAGCCCAGTTAATTTACAAAAA 58.968 33.333 0.00 0.00 37.23 1.94
4975 7316 7.543756 GCAGATAGCCCAGTTAATTTACAAAA 58.456 34.615 0.00 0.00 37.23 2.44
4976 7317 6.183360 CGCAGATAGCCCAGTTAATTTACAAA 60.183 38.462 0.00 0.00 41.38 2.83
4977 7318 5.295787 CGCAGATAGCCCAGTTAATTTACAA 59.704 40.000 0.00 0.00 41.38 2.41
4978 7319 4.814234 CGCAGATAGCCCAGTTAATTTACA 59.186 41.667 0.00 0.00 41.38 2.41
4979 7320 4.213482 CCGCAGATAGCCCAGTTAATTTAC 59.787 45.833 0.00 0.00 41.38 2.01
4980 7321 4.385825 CCGCAGATAGCCCAGTTAATTTA 58.614 43.478 0.00 0.00 41.38 1.40
4981 7322 3.214328 CCGCAGATAGCCCAGTTAATTT 58.786 45.455 0.00 0.00 41.38 1.82
4982 7323 2.487265 CCCGCAGATAGCCCAGTTAATT 60.487 50.000 0.00 0.00 41.38 1.40
4983 7324 1.072331 CCCGCAGATAGCCCAGTTAAT 59.928 52.381 0.00 0.00 41.38 1.40
4984 7325 0.468226 CCCGCAGATAGCCCAGTTAA 59.532 55.000 0.00 0.00 41.38 2.01
4985 7326 0.397957 TCCCGCAGATAGCCCAGTTA 60.398 55.000 0.00 0.00 41.38 2.24
4986 7327 1.689233 TCCCGCAGATAGCCCAGTT 60.689 57.895 0.00 0.00 41.38 3.16
4987 7328 2.041922 TCCCGCAGATAGCCCAGT 60.042 61.111 0.00 0.00 41.38 4.00
4988 7329 1.834378 TCTCCCGCAGATAGCCCAG 60.834 63.158 0.00 0.00 41.38 4.45
4989 7330 2.134287 GTCTCCCGCAGATAGCCCA 61.134 63.158 0.00 0.00 41.38 5.36
4990 7331 1.686325 TTGTCTCCCGCAGATAGCCC 61.686 60.000 0.00 0.00 41.38 5.19
5001 7342 5.669164 AGAATCTAGTGTTCTTGTCTCCC 57.331 43.478 7.15 0.00 32.17 4.30
5004 7345 6.459923 GTGGAAGAATCTAGTGTTCTTGTCT 58.540 40.000 21.95 6.49 43.80 3.41
5082 7423 4.549458 GATCAACAACAATCACACCCAAG 58.451 43.478 0.00 0.00 0.00 3.61
5109 7450 7.935338 ATTATTTGCCATTGATTTTAGCTCG 57.065 32.000 0.00 0.00 0.00 5.03
5213 7554 6.072452 AGCAGTTAACCTTGAGTTCATTTAGC 60.072 38.462 0.88 0.00 40.05 3.09
5214 7555 7.173218 TCAGCAGTTAACCTTGAGTTCATTTAG 59.827 37.037 0.88 0.00 40.05 1.85
5215 7556 6.995686 TCAGCAGTTAACCTTGAGTTCATTTA 59.004 34.615 0.88 0.00 40.05 1.40
5304 7646 7.164122 TGATAAAAGTGAGCTGAGAATCTGTT 58.836 34.615 0.00 0.00 36.33 3.16
5307 7649 7.282675 CCATTGATAAAAGTGAGCTGAGAATCT 59.717 37.037 0.00 0.00 34.92 2.40
5313 7655 7.363181 CCAATTCCATTGATAAAAGTGAGCTGA 60.363 37.037 0.00 0.00 42.83 4.26
5331 7673 5.200483 GTCTCCACAAATATCCCAATTCCA 58.800 41.667 0.00 0.00 0.00 3.53
5407 7749 4.415881 ACCAGCACCGTATCATTTATCA 57.584 40.909 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.