Multiple sequence alignment - TraesCS4B01G181500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G181500 chr4B 100.000 4226 0 0 992 5217 398556848 398561073 0.000000e+00 7805.0
1 TraesCS4B01G181500 chr4B 100.000 704 0 0 1 704 398555857 398556560 0.000000e+00 1301.0
2 TraesCS4B01G181500 chr4B 92.532 308 23 0 1 308 134561395 134561702 4.790000e-120 442.0
3 TraesCS4B01G181500 chr4A 92.557 3480 154 48 992 4427 150227302 150230720 0.000000e+00 4894.0
4 TraesCS4B01G181500 chr4A 96.026 302 8 3 388 688 150226622 150226920 6.070000e-134 488.0
5 TraesCS4B01G181500 chr4D 92.033 1682 69 39 2767 4427 322674847 322673210 0.000000e+00 2303.0
6 TraesCS4B01G181500 chr4D 93.467 949 40 7 992 1939 322676834 322675907 0.000000e+00 1389.0
7 TraesCS4B01G181500 chr4D 85.631 856 55 17 1937 2764 322675755 322674940 0.000000e+00 837.0
8 TraesCS4B01G181500 chr4D 92.099 405 16 10 307 704 322677246 322676851 1.640000e-154 556.0
9 TraesCS4B01G181500 chr4D 87.037 54 7 0 2389 2442 322675413 322675360 1.570000e-05 62.1
10 TraesCS4B01G181500 chr7B 95.013 782 33 5 4440 5217 468422279 468421500 0.000000e+00 1223.0
11 TraesCS4B01G181500 chr7B 84.122 592 79 13 4439 5022 641595146 641594562 4.560000e-155 558.0
12 TraesCS4B01G181500 chr7B 93.871 310 19 0 1 310 532291048 532290739 7.910000e-128 468.0
13 TraesCS4B01G181500 chr7B 97.297 148 4 0 5028 5175 682233787 682233934 8.670000e-63 252.0
14 TraesCS4B01G181500 chr7B 95.946 148 6 0 5028 5175 125494878 125494731 1.880000e-59 241.0
15 TraesCS4B01G181500 chr2B 94.878 781 27 4 4440 5217 563865189 563864419 0.000000e+00 1208.0
16 TraesCS4B01G181500 chr2B 84.576 590 79 12 4440 5022 608360672 608361256 4.530000e-160 575.0
17 TraesCS4B01G181500 chr2B 93.226 310 21 0 1 310 683668726 683668417 1.710000e-124 457.0
18 TraesCS4B01G181500 chr2B 93.182 308 18 2 2 309 182260305 182260001 2.870000e-122 449.0
19 TraesCS4B01G181500 chr3B 94.501 782 26 7 4439 5217 24830744 24829977 0.000000e+00 1190.0
20 TraesCS4B01G181500 chr3B 89.682 785 38 6 4438 5217 520442869 520443615 0.000000e+00 961.0
21 TraesCS4B01G181500 chr3B 83.559 590 84 11 4440 5022 161142353 161141770 1.650000e-149 540.0
22 TraesCS4B01G181500 chr3B 93.069 303 21 0 7 309 3041556 3041254 1.330000e-120 444.0
23 TraesCS4B01G181500 chr3B 91.892 111 7 2 2506 2615 753727556 753727665 2.520000e-33 154.0
24 TraesCS4B01G181500 chr1A 93.982 781 28 6 4440 5217 430185631 430184867 0.000000e+00 1164.0
25 TraesCS4B01G181500 chr6B 93.733 718 23 5 4522 5217 673826341 673827058 0.000000e+00 1057.0
26 TraesCS4B01G181500 chr6B 83.587 591 86 10 4438 5022 668715804 668716389 1.280000e-150 544.0
27 TraesCS4B01G181500 chr6B 93.811 307 19 0 2 308 195177999 195178305 3.680000e-126 462.0
28 TraesCS4B01G181500 chr6B 93.160 307 20 1 2 308 715341939 715342244 2.870000e-122 449.0
29 TraesCS4B01G181500 chr6B 91.987 312 25 0 2 313 221395518 221395829 6.200000e-119 438.0
30 TraesCS4B01G181500 chr6B 80.347 173 31 3 2534 2705 342956347 342956517 1.520000e-25 128.0
31 TraesCS4B01G181500 chrUn 86.201 587 73 6 4440 5022 44260821 44260239 3.430000e-176 628.0
32 TraesCS4B01G181500 chr6A 85.034 588 79 7 4440 5022 288011655 288012238 1.620000e-164 590.0
33 TraesCS4B01G181500 chr5A 84.157 587 85 6 4440 5022 282986561 282987143 3.530000e-156 562.0
34 TraesCS4B01G181500 chr5A 85.950 121 17 0 2559 2679 580942295 580942415 4.240000e-26 130.0
35 TraesCS4B01G181500 chr1B 93.831 308 19 0 2 309 147633516 147633209 1.020000e-126 464.0
36 TraesCS4B01G181500 chr1B 96.859 191 5 1 5028 5217 54138124 54137934 8.430000e-83 318.0
37 TraesCS4B01G181500 chr7D 93.750 112 6 1 2516 2626 408029692 408029803 3.230000e-37 167.0
38 TraesCS4B01G181500 chr7D 83.607 122 12 6 2500 2616 295668614 295668496 1.990000e-19 108.0
39 TraesCS4B01G181500 chr7D 82.456 114 17 3 2587 2698 633524059 633524171 4.300000e-16 97.1
40 TraesCS4B01G181500 chr7D 91.837 49 4 0 2151 2199 408368526 408368478 9.370000e-08 69.4
41 TraesCS4B01G181500 chr5B 90.164 122 11 1 2559 2679 566682041 566682162 1.940000e-34 158.0
42 TraesCS4B01G181500 chr5B 87.500 96 10 2 2587 2681 6835907 6836001 5.520000e-20 110.0
43 TraesCS4B01G181500 chr5B 86.458 96 11 2 2587 2681 24628796 24628890 2.570000e-18 104.0
44 TraesCS4B01G181500 chr3D 91.892 111 7 2 2506 2615 565617353 565617462 2.520000e-33 154.0
45 TraesCS4B01G181500 chr3A 89.189 111 10 2 2506 2615 699842429 699842538 2.530000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G181500 chr4B 398555857 398561073 5216 False 4553.00 7805 100.0000 1 5217 2 chr4B.!!$F2 5216
1 TraesCS4B01G181500 chr4A 150226622 150230720 4098 False 2691.00 4894 94.2915 388 4427 2 chr4A.!!$F1 4039
2 TraesCS4B01G181500 chr4D 322673210 322677246 4036 True 1029.42 2303 90.0534 307 4427 5 chr4D.!!$R1 4120
3 TraesCS4B01G181500 chr7B 468421500 468422279 779 True 1223.00 1223 95.0130 4440 5217 1 chr7B.!!$R2 777
4 TraesCS4B01G181500 chr7B 641594562 641595146 584 True 558.00 558 84.1220 4439 5022 1 chr7B.!!$R4 583
5 TraesCS4B01G181500 chr2B 563864419 563865189 770 True 1208.00 1208 94.8780 4440 5217 1 chr2B.!!$R2 777
6 TraesCS4B01G181500 chr2B 608360672 608361256 584 False 575.00 575 84.5760 4440 5022 1 chr2B.!!$F1 582
7 TraesCS4B01G181500 chr3B 24829977 24830744 767 True 1190.00 1190 94.5010 4439 5217 1 chr3B.!!$R2 778
8 TraesCS4B01G181500 chr3B 520442869 520443615 746 False 961.00 961 89.6820 4438 5217 1 chr3B.!!$F1 779
9 TraesCS4B01G181500 chr3B 161141770 161142353 583 True 540.00 540 83.5590 4440 5022 1 chr3B.!!$R3 582
10 TraesCS4B01G181500 chr1A 430184867 430185631 764 True 1164.00 1164 93.9820 4440 5217 1 chr1A.!!$R1 777
11 TraesCS4B01G181500 chr6B 673826341 673827058 717 False 1057.00 1057 93.7330 4522 5217 1 chr6B.!!$F5 695
12 TraesCS4B01G181500 chr6B 668715804 668716389 585 False 544.00 544 83.5870 4438 5022 1 chr6B.!!$F4 584
13 TraesCS4B01G181500 chrUn 44260239 44260821 582 True 628.00 628 86.2010 4440 5022 1 chrUn.!!$R1 582
14 TraesCS4B01G181500 chr6A 288011655 288012238 583 False 590.00 590 85.0340 4440 5022 1 chr6A.!!$F1 582
15 TraesCS4B01G181500 chr5A 282986561 282987143 582 False 562.00 562 84.1570 4440 5022 1 chr5A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.174845 CCCACATGCATGCAAGGAAG 59.825 55.000 28.54 17.7 0.00 3.46 F
137 138 0.174845 CCACATGCATGCAAGGAAGG 59.825 55.000 26.68 19.0 0.00 3.46 F
596 611 0.625849 ATCCACATCACCTCCCAACC 59.374 55.000 0.00 0.0 0.00 3.77 F
1683 1783 0.723981 GCTGCTCACGGTCTGAAATC 59.276 55.000 0.00 0.0 0.00 2.17 F
2292 2572 0.101759 AAACTGCTGCTGTTGCTGTG 59.898 50.000 22.77 0.0 41.24 3.66 F
2399 2679 1.001887 TGTGCCATGCTGATGCTGA 60.002 52.632 0.00 0.0 40.48 4.26 F
3870 4259 0.247974 GCATGACAGATTGCTGACGC 60.248 55.000 0.00 0.0 45.17 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1530 0.461870 ACGCACACTCAGTTGCTCAA 60.462 50.000 9.40 0.00 0.00 3.02 R
1847 1947 0.681887 CACTCCATGATGGCTGCCAA 60.682 55.000 27.24 10.96 36.95 4.52 R
2287 2567 1.030488 ATGTCCAGCATCAGCACAGC 61.030 55.000 0.00 0.00 45.49 4.40 R
3286 3672 1.990563 GCGTACTGCAACACGAATAGT 59.009 47.619 20.44 0.00 45.45 2.12 R
3827 4216 1.079503 GCTTCTGGATTGTGACGACC 58.920 55.000 0.00 0.00 0.00 4.79 R
3991 4383 1.273606 TGCAGGCGCTCCTCTTATATC 59.726 52.381 7.64 0.00 41.93 1.63 R
4871 5325 0.538584 TCTAGCCTGGAGTACGTCGA 59.461 55.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.692984 ATACCCCCTCCATTCCCTTAT 57.307 47.619 0.00 0.00 0.00 1.73
21 22 4.814721 ATACCCCCTCCATTCCCTTATA 57.185 45.455 0.00 0.00 0.00 0.98
22 23 2.714808 ACCCCCTCCATTCCCTTATAC 58.285 52.381 0.00 0.00 0.00 1.47
23 24 2.020441 ACCCCCTCCATTCCCTTATACA 60.020 50.000 0.00 0.00 0.00 2.29
24 25 3.060611 CCCCCTCCATTCCCTTATACAA 58.939 50.000 0.00 0.00 0.00 2.41
25 26 3.074538 CCCCCTCCATTCCCTTATACAAG 59.925 52.174 0.00 0.00 0.00 3.16
38 39 6.727824 CCTTATACAAGGTCACAAACTCAG 57.272 41.667 0.00 0.00 45.59 3.35
39 40 6.464222 CCTTATACAAGGTCACAAACTCAGA 58.536 40.000 0.00 0.00 45.59 3.27
40 41 7.106239 CCTTATACAAGGTCACAAACTCAGAT 58.894 38.462 0.00 0.00 45.59 2.90
41 42 7.607991 CCTTATACAAGGTCACAAACTCAGATT 59.392 37.037 0.00 0.00 45.59 2.40
42 43 9.653287 CTTATACAAGGTCACAAACTCAGATTA 57.347 33.333 0.00 0.00 0.00 1.75
43 44 7.907214 ATACAAGGTCACAAACTCAGATTAC 57.093 36.000 0.00 0.00 0.00 1.89
44 45 5.680619 ACAAGGTCACAAACTCAGATTACA 58.319 37.500 0.00 0.00 0.00 2.41
45 46 5.760253 ACAAGGTCACAAACTCAGATTACAG 59.240 40.000 0.00 0.00 0.00 2.74
46 47 4.899502 AGGTCACAAACTCAGATTACAGG 58.100 43.478 0.00 0.00 0.00 4.00
47 48 4.348168 AGGTCACAAACTCAGATTACAGGT 59.652 41.667 0.00 0.00 0.00 4.00
48 49 5.542635 AGGTCACAAACTCAGATTACAGGTA 59.457 40.000 0.00 0.00 0.00 3.08
49 50 5.638234 GGTCACAAACTCAGATTACAGGTAC 59.362 44.000 0.00 0.00 0.00 3.34
50 51 5.638234 GTCACAAACTCAGATTACAGGTACC 59.362 44.000 2.73 2.73 0.00 3.34
51 52 5.305902 TCACAAACTCAGATTACAGGTACCA 59.694 40.000 15.94 0.00 0.00 3.25
52 53 5.995282 CACAAACTCAGATTACAGGTACCAA 59.005 40.000 15.94 0.00 0.00 3.67
53 54 6.147821 CACAAACTCAGATTACAGGTACCAAG 59.852 42.308 15.94 8.83 0.00 3.61
54 55 5.422214 AACTCAGATTACAGGTACCAAGG 57.578 43.478 15.94 5.66 0.00 3.61
55 56 4.426704 ACTCAGATTACAGGTACCAAGGT 58.573 43.478 15.94 11.64 0.00 3.50
56 57 5.586877 ACTCAGATTACAGGTACCAAGGTA 58.413 41.667 15.94 10.60 0.00 3.08
57 58 6.021030 ACTCAGATTACAGGTACCAAGGTAA 58.979 40.000 15.94 18.28 31.86 2.85
58 59 6.499350 ACTCAGATTACAGGTACCAAGGTAAA 59.501 38.462 20.60 9.15 31.86 2.01
59 60 7.016858 ACTCAGATTACAGGTACCAAGGTAAAA 59.983 37.037 20.60 7.94 31.86 1.52
60 61 7.924541 TCAGATTACAGGTACCAAGGTAAAAT 58.075 34.615 20.60 11.29 31.86 1.82
61 62 8.387813 TCAGATTACAGGTACCAAGGTAAAATT 58.612 33.333 20.60 10.04 31.86 1.82
62 63 9.020731 CAGATTACAGGTACCAAGGTAAAATTT 57.979 33.333 20.60 9.78 31.86 1.82
67 68 8.943594 ACAGGTACCAAGGTAAAATTTAATGA 57.056 30.769 15.94 0.00 31.86 2.57
68 69 8.799367 ACAGGTACCAAGGTAAAATTTAATGAC 58.201 33.333 15.94 0.00 31.86 3.06
69 70 9.020731 CAGGTACCAAGGTAAAATTTAATGACT 57.979 33.333 15.94 0.00 31.86 3.41
70 71 9.020731 AGGTACCAAGGTAAAATTTAATGACTG 57.979 33.333 15.94 0.00 31.86 3.51
71 72 7.758076 GGTACCAAGGTAAAATTTAATGACTGC 59.242 37.037 7.15 0.00 31.86 4.40
72 73 7.539034 ACCAAGGTAAAATTTAATGACTGCT 57.461 32.000 0.00 0.00 0.00 4.24
73 74 7.962441 ACCAAGGTAAAATTTAATGACTGCTT 58.038 30.769 0.00 0.00 0.00 3.91
74 75 8.428852 ACCAAGGTAAAATTTAATGACTGCTTT 58.571 29.630 0.00 0.00 0.00 3.51
75 76 8.711457 CCAAGGTAAAATTTAATGACTGCTTTG 58.289 33.333 0.00 0.00 0.00 2.77
76 77 7.889589 AGGTAAAATTTAATGACTGCTTTGC 57.110 32.000 0.00 0.00 0.00 3.68
77 78 6.586082 AGGTAAAATTTAATGACTGCTTTGCG 59.414 34.615 0.00 0.00 0.00 4.85
78 79 6.584563 GGTAAAATTTAATGACTGCTTTGCGA 59.415 34.615 0.00 0.00 0.00 5.10
79 80 6.695292 AAAATTTAATGACTGCTTTGCGAG 57.305 33.333 0.00 0.00 0.00 5.03
93 94 5.349824 CTTTGCGAGCTAACTTTTCTTCT 57.650 39.130 0.00 0.00 0.00 2.85
94 95 4.992381 TTGCGAGCTAACTTTTCTTCTC 57.008 40.909 0.00 0.00 0.00 2.87
95 96 2.987149 TGCGAGCTAACTTTTCTTCTCG 59.013 45.455 5.24 5.24 44.14 4.04
96 97 2.987821 GCGAGCTAACTTTTCTTCTCGT 59.012 45.455 10.46 0.00 43.49 4.18
97 98 3.429207 GCGAGCTAACTTTTCTTCTCGTT 59.571 43.478 10.46 0.00 43.49 3.85
98 99 4.620184 GCGAGCTAACTTTTCTTCTCGTTA 59.380 41.667 10.46 0.00 43.49 3.18
99 100 5.118203 GCGAGCTAACTTTTCTTCTCGTTAA 59.882 40.000 10.46 0.00 43.49 2.01
100 101 6.515026 CGAGCTAACTTTTCTTCTCGTTAAC 58.485 40.000 0.00 0.00 38.71 2.01
101 102 6.399775 CGAGCTAACTTTTCTTCTCGTTAACC 60.400 42.308 0.00 0.00 38.71 2.85
102 103 5.404667 AGCTAACTTTTCTTCTCGTTAACCG 59.595 40.000 0.00 0.00 38.13 4.44
103 104 5.389202 GCTAACTTTTCTTCTCGTTAACCGG 60.389 44.000 0.00 0.00 37.11 5.28
104 105 3.396560 ACTTTTCTTCTCGTTAACCGGG 58.603 45.455 6.32 0.00 38.86 5.73
105 106 3.070015 ACTTTTCTTCTCGTTAACCGGGA 59.930 43.478 6.32 0.00 46.54 5.14
113 114 5.540400 TCTCGTTAACCGGGATCATTAAT 57.460 39.130 6.32 0.00 42.36 1.40
114 115 6.653526 TCTCGTTAACCGGGATCATTAATA 57.346 37.500 6.32 0.00 42.36 0.98
115 116 7.235935 TCTCGTTAACCGGGATCATTAATAT 57.764 36.000 6.32 0.00 42.36 1.28
116 117 7.094631 TCTCGTTAACCGGGATCATTAATATG 58.905 38.462 6.32 0.00 42.36 1.78
117 118 5.640357 TCGTTAACCGGGATCATTAATATGC 59.360 40.000 6.32 0.00 37.11 3.14
118 119 5.163794 CGTTAACCGGGATCATTAATATGCC 60.164 44.000 6.32 0.00 0.00 4.40
119 120 3.366052 ACCGGGATCATTAATATGCCC 57.634 47.619 6.32 8.08 33.17 5.36
120 121 2.647299 ACCGGGATCATTAATATGCCCA 59.353 45.455 6.32 0.00 35.09 5.36
121 122 3.016736 CCGGGATCATTAATATGCCCAC 58.983 50.000 15.19 0.00 35.09 4.61
122 123 3.561097 CCGGGATCATTAATATGCCCACA 60.561 47.826 15.19 0.00 35.09 4.17
123 124 4.272489 CGGGATCATTAATATGCCCACAT 58.728 43.478 15.19 0.00 35.09 3.21
124 125 4.096833 CGGGATCATTAATATGCCCACATG 59.903 45.833 15.19 0.00 35.09 3.21
125 126 4.142093 GGGATCATTAATATGCCCACATGC 60.142 45.833 11.75 0.00 37.04 4.06
126 127 4.463539 GGATCATTAATATGCCCACATGCA 59.536 41.667 0.00 0.00 46.94 3.96
132 133 2.974717 TGCCCACATGCATGCAAG 59.025 55.556 26.68 23.45 36.04 4.01
133 134 2.185867 GCCCACATGCATGCAAGG 59.814 61.111 26.68 24.46 0.00 3.61
134 135 2.352821 GCCCACATGCATGCAAGGA 61.353 57.895 28.54 8.19 0.00 3.36
135 136 1.890625 GCCCACATGCATGCAAGGAA 61.891 55.000 28.54 7.83 0.00 3.36
136 137 0.174845 CCCACATGCATGCAAGGAAG 59.825 55.000 28.54 17.70 0.00 3.46
137 138 0.174845 CCACATGCATGCAAGGAAGG 59.825 55.000 26.68 19.00 0.00 3.46
138 139 1.179152 CACATGCATGCAAGGAAGGA 58.821 50.000 26.68 0.00 0.00 3.36
139 140 1.546923 CACATGCATGCAAGGAAGGAA 59.453 47.619 26.68 0.00 0.00 3.36
140 141 2.167693 CACATGCATGCAAGGAAGGAAT 59.832 45.455 26.68 0.80 0.00 3.01
141 142 2.167693 ACATGCATGCAAGGAAGGAATG 59.832 45.455 26.68 16.97 0.00 2.67
142 143 2.219080 TGCATGCAAGGAAGGAATGA 57.781 45.000 20.30 0.00 0.00 2.57
143 144 2.097036 TGCATGCAAGGAAGGAATGAG 58.903 47.619 20.30 0.00 0.00 2.90
144 145 2.291089 TGCATGCAAGGAAGGAATGAGA 60.291 45.455 20.30 0.00 0.00 3.27
145 146 2.756760 GCATGCAAGGAAGGAATGAGAA 59.243 45.455 14.21 0.00 0.00 2.87
146 147 3.181489 GCATGCAAGGAAGGAATGAGAAG 60.181 47.826 14.21 0.00 0.00 2.85
147 148 3.077484 TGCAAGGAAGGAATGAGAAGG 57.923 47.619 0.00 0.00 0.00 3.46
148 149 2.644299 TGCAAGGAAGGAATGAGAAGGA 59.356 45.455 0.00 0.00 0.00 3.36
149 150 3.074390 TGCAAGGAAGGAATGAGAAGGAA 59.926 43.478 0.00 0.00 0.00 3.36
150 151 4.082125 GCAAGGAAGGAATGAGAAGGAAA 58.918 43.478 0.00 0.00 0.00 3.13
151 152 4.708909 GCAAGGAAGGAATGAGAAGGAAAT 59.291 41.667 0.00 0.00 0.00 2.17
152 153 5.186603 GCAAGGAAGGAATGAGAAGGAAATT 59.813 40.000 0.00 0.00 0.00 1.82
153 154 6.378280 GCAAGGAAGGAATGAGAAGGAAATTA 59.622 38.462 0.00 0.00 0.00 1.40
154 155 7.629437 GCAAGGAAGGAATGAGAAGGAAATTAC 60.629 40.741 0.00 0.00 0.00 1.89
155 156 7.032598 AGGAAGGAATGAGAAGGAAATTACA 57.967 36.000 0.00 0.00 0.00 2.41
156 157 7.646884 AGGAAGGAATGAGAAGGAAATTACAT 58.353 34.615 0.00 0.00 0.00 2.29
157 158 8.781951 AGGAAGGAATGAGAAGGAAATTACATA 58.218 33.333 0.00 0.00 0.00 2.29
158 159 9.061435 GGAAGGAATGAGAAGGAAATTACATAG 57.939 37.037 0.00 0.00 0.00 2.23
159 160 9.620259 GAAGGAATGAGAAGGAAATTACATAGT 57.380 33.333 0.00 0.00 0.00 2.12
160 161 8.970859 AGGAATGAGAAGGAAATTACATAGTG 57.029 34.615 0.00 0.00 0.00 2.74
161 162 8.552296 AGGAATGAGAAGGAAATTACATAGTGT 58.448 33.333 0.00 0.00 0.00 3.55
162 163 8.831550 GGAATGAGAAGGAAATTACATAGTGTC 58.168 37.037 0.00 0.00 0.00 3.67
163 164 9.383519 GAATGAGAAGGAAATTACATAGTGTCA 57.616 33.333 0.00 0.00 0.00 3.58
164 165 9.911788 AATGAGAAGGAAATTACATAGTGTCAT 57.088 29.630 0.00 0.00 0.00 3.06
165 166 9.911788 ATGAGAAGGAAATTACATAGTGTCATT 57.088 29.630 0.00 0.00 0.00 2.57
181 182 7.194607 AGTGTCATTATAACTACATGCATGC 57.805 36.000 26.53 11.82 0.00 4.06
182 183 6.767423 AGTGTCATTATAACTACATGCATGCA 59.233 34.615 26.53 25.04 0.00 3.96
183 184 7.282901 AGTGTCATTATAACTACATGCATGCAA 59.717 33.333 26.68 13.91 0.00 4.08
184 185 7.588854 GTGTCATTATAACTACATGCATGCAAG 59.411 37.037 26.68 23.45 0.00 4.01
185 186 7.282901 TGTCATTATAACTACATGCATGCAAGT 59.717 33.333 29.11 29.11 0.00 3.16
186 187 8.773645 GTCATTATAACTACATGCATGCAAGTA 58.226 33.333 28.33 28.33 30.11 2.24
187 188 9.506018 TCATTATAACTACATGCATGCAAGTAT 57.494 29.630 29.78 20.79 31.16 2.12
198 199 9.304731 ACATGCATGCAAGTATTAAATAAGTTG 57.695 29.630 25.90 14.84 0.00 3.16
199 200 7.754069 TGCATGCAAGTATTAAATAAGTTGC 57.246 32.000 20.30 15.92 37.42 4.17
200 201 7.546358 TGCATGCAAGTATTAAATAAGTTGCT 58.454 30.769 20.30 9.89 37.62 3.91
201 202 8.681806 TGCATGCAAGTATTAAATAAGTTGCTA 58.318 29.630 20.30 12.23 37.62 3.49
202 203 8.958043 GCATGCAAGTATTAAATAAGTTGCTAC 58.042 33.333 14.21 11.39 37.62 3.58
214 215 8.919777 AAATAAGTTGCTACTACAAGGAAACT 57.080 30.769 0.00 0.00 36.53 2.66
215 216 8.919777 AATAAGTTGCTACTACAAGGAAACTT 57.080 30.769 0.00 0.00 42.54 2.66
216 217 8.919777 ATAAGTTGCTACTACAAGGAAACTTT 57.080 30.769 0.00 0.00 40.81 2.66
218 219 8.919777 AAGTTGCTACTACAAGGAAACTTTAT 57.080 30.769 0.00 0.00 40.81 1.40
219 220 8.919777 AGTTGCTACTACAAGGAAACTTTATT 57.080 30.769 0.00 0.00 40.19 1.40
247 248 9.869757 ATTTTTACCTTGATTAATGTTAGTGGC 57.130 29.630 0.00 0.00 0.00 5.01
248 249 7.399245 TTTACCTTGATTAATGTTAGTGGCC 57.601 36.000 0.00 0.00 0.00 5.36
249 250 5.193099 ACCTTGATTAATGTTAGTGGCCT 57.807 39.130 3.32 0.00 0.00 5.19
250 251 5.580022 ACCTTGATTAATGTTAGTGGCCTT 58.420 37.500 3.32 0.00 0.00 4.35
251 252 5.418840 ACCTTGATTAATGTTAGTGGCCTTG 59.581 40.000 3.32 0.00 0.00 3.61
252 253 5.418840 CCTTGATTAATGTTAGTGGCCTTGT 59.581 40.000 3.32 0.00 0.00 3.16
253 254 6.601613 CCTTGATTAATGTTAGTGGCCTTGTA 59.398 38.462 3.32 0.00 0.00 2.41
254 255 7.285401 CCTTGATTAATGTTAGTGGCCTTGTAT 59.715 37.037 3.32 0.00 0.00 2.29
255 256 9.337396 CTTGATTAATGTTAGTGGCCTTGTATA 57.663 33.333 3.32 0.00 0.00 1.47
256 257 8.902540 TGATTAATGTTAGTGGCCTTGTATAG 57.097 34.615 3.32 0.00 0.00 1.31
258 259 5.710409 AATGTTAGTGGCCTTGTATAGGT 57.290 39.130 3.32 0.00 46.61 3.08
259 260 4.481368 TGTTAGTGGCCTTGTATAGGTG 57.519 45.455 3.32 0.00 46.61 4.00
260 261 3.203716 GTTAGTGGCCTTGTATAGGTGC 58.796 50.000 3.32 0.00 46.61 5.01
261 262 1.285280 AGTGGCCTTGTATAGGTGCA 58.715 50.000 3.32 0.00 46.61 4.57
262 263 1.633432 AGTGGCCTTGTATAGGTGCAA 59.367 47.619 3.32 0.00 46.61 4.08
263 264 2.041081 AGTGGCCTTGTATAGGTGCAAA 59.959 45.455 3.32 0.00 46.61 3.68
264 265 2.823154 GTGGCCTTGTATAGGTGCAAAA 59.177 45.455 3.32 0.00 46.61 2.44
265 266 3.447229 GTGGCCTTGTATAGGTGCAAAAT 59.553 43.478 3.32 0.00 46.61 1.82
266 267 3.446873 TGGCCTTGTATAGGTGCAAAATG 59.553 43.478 3.32 0.00 46.61 2.32
267 268 3.447229 GGCCTTGTATAGGTGCAAAATGT 59.553 43.478 0.00 0.00 46.61 2.71
268 269 4.642885 GGCCTTGTATAGGTGCAAAATGTA 59.357 41.667 0.00 0.00 46.61 2.29
269 270 5.301805 GGCCTTGTATAGGTGCAAAATGTAT 59.698 40.000 0.00 0.00 46.61 2.29
270 271 6.183360 GGCCTTGTATAGGTGCAAAATGTATT 60.183 38.462 0.00 0.00 46.61 1.89
271 272 7.264947 GCCTTGTATAGGTGCAAAATGTATTT 58.735 34.615 0.00 0.00 46.61 1.40
272 273 7.763985 GCCTTGTATAGGTGCAAAATGTATTTT 59.236 33.333 0.00 0.00 46.61 1.82
273 274 9.651913 CCTTGTATAGGTGCAAAATGTATTTTT 57.348 29.630 0.00 0.00 37.28 1.94
280 281 8.761575 AGGTGCAAAATGTATTTTTCATACTG 57.238 30.769 5.87 0.00 37.86 2.74
281 282 7.818930 AGGTGCAAAATGTATTTTTCATACTGG 59.181 33.333 5.87 0.00 37.86 4.00
282 283 7.412891 GGTGCAAAATGTATTTTTCATACTGGC 60.413 37.037 5.87 3.03 37.86 4.85
283 284 6.593382 TGCAAAATGTATTTTTCATACTGGCC 59.407 34.615 0.00 0.00 37.86 5.36
284 285 6.818142 GCAAAATGTATTTTTCATACTGGCCT 59.182 34.615 3.32 0.00 37.86 5.19
285 286 7.334171 GCAAAATGTATTTTTCATACTGGCCTT 59.666 33.333 3.32 0.00 37.86 4.35
286 287 8.658609 CAAAATGTATTTTTCATACTGGCCTTG 58.341 33.333 3.32 0.00 37.86 3.61
287 288 7.480760 AATGTATTTTTCATACTGGCCTTGT 57.519 32.000 3.32 5.68 0.00 3.16
288 289 8.588290 AATGTATTTTTCATACTGGCCTTGTA 57.412 30.769 3.32 8.02 0.00 2.41
289 290 8.766994 ATGTATTTTTCATACTGGCCTTGTAT 57.233 30.769 3.32 10.14 0.00 2.29
290 291 9.860650 ATGTATTTTTCATACTGGCCTTGTATA 57.139 29.630 17.38 6.53 0.00 1.47
291 292 9.688091 TGTATTTTTCATACTGGCCTTGTATAA 57.312 29.630 17.38 11.08 0.00 0.98
430 432 3.000727 AGTACAAAGATTTCCGCCTTCG 58.999 45.455 0.00 0.00 0.00 3.79
453 455 2.031768 GAGGCCATCGATGAGCCC 59.968 66.667 34.93 27.08 41.85 5.19
464 466 1.786937 GATGAGCCCCTCTCTCTCAA 58.213 55.000 0.00 0.00 42.38 3.02
596 611 0.625849 ATCCACATCACCTCCCAACC 59.374 55.000 0.00 0.00 0.00 3.77
701 716 1.745489 ACGCGCTTCCCAATTCCTC 60.745 57.895 5.73 0.00 0.00 3.71
1412 1506 3.466836 TCCTTTGTAGCGGCAGATATTG 58.533 45.455 1.45 0.00 0.00 1.90
1493 1593 4.267690 GGCTTAACTTATTGCCGCAATTTC 59.732 41.667 23.14 1.67 35.54 2.17
1494 1594 4.862018 GCTTAACTTATTGCCGCAATTTCA 59.138 37.500 23.14 3.41 35.54 2.69
1533 1633 6.075762 TCATATGATTTACAATGCCTGTGC 57.924 37.500 0.00 0.00 39.20 4.57
1539 1639 1.836999 TACAATGCCTGTGCCCGAGT 61.837 55.000 0.00 0.00 39.20 4.18
1683 1783 0.723981 GCTGCTCACGGTCTGAAATC 59.276 55.000 0.00 0.00 0.00 2.17
1712 1812 3.019564 CCTAATTTCCCTGCCTCAGTTG 58.980 50.000 0.00 0.00 0.00 3.16
1752 1852 5.056894 AGCTGTTGATGAATCTTGCTTTC 57.943 39.130 0.00 0.00 0.00 2.62
1769 1869 6.636454 TGCTTTCTCTTCTCCCCTTTTATA 57.364 37.500 0.00 0.00 0.00 0.98
1796 1896 1.891150 CTGCAGCCAAGTGGAAGATTT 59.109 47.619 0.00 0.00 37.39 2.17
1847 1947 1.283613 TCAAATTACCACCCCGAGCAT 59.716 47.619 0.00 0.00 0.00 3.79
1904 2004 3.921119 TGTAAAATGGCTGCTCAAGTG 57.079 42.857 0.00 0.00 0.00 3.16
1907 2007 2.283145 AAATGGCTGCTCAAGTGAGT 57.717 45.000 9.94 0.00 43.85 3.41
1912 2012 2.368548 TGGCTGCTCAAGTGAGTTCTTA 59.631 45.455 9.94 0.00 43.85 2.10
2060 2333 9.909644 ATTGGTTATCTAATACACGACTATGTC 57.090 33.333 0.00 0.00 33.85 3.06
2068 2341 9.689976 TCTAATACACGACTATGTCTAGTAGAC 57.310 37.037 21.35 21.35 45.26 2.59
2069 2342 9.695526 CTAATACACGACTATGTCTAGTAGACT 57.304 37.037 26.60 16.34 45.27 3.24
2071 2344 9.695526 AATACACGACTATGTCTAGTAGACTAG 57.304 37.037 26.60 24.05 45.27 2.57
2072 2345 7.111247 ACACGACTATGTCTAGTAGACTAGT 57.889 40.000 26.60 26.24 45.27 2.57
2073 2346 8.231692 ACACGACTATGTCTAGTAGACTAGTA 57.768 38.462 26.60 16.77 45.27 1.82
2074 2347 8.690884 ACACGACTATGTCTAGTAGACTAGTAA 58.309 37.037 26.60 10.21 45.27 2.24
2075 2348 9.695526 CACGACTATGTCTAGTAGACTAGTAAT 57.304 37.037 26.60 15.79 45.27 1.89
2076 2349 9.695526 ACGACTATGTCTAGTAGACTAGTAATG 57.304 37.037 26.60 21.77 45.27 1.90
2077 2350 9.911138 CGACTATGTCTAGTAGACTAGTAATGA 57.089 37.037 26.60 8.24 45.27 2.57
2079 2352 9.715121 ACTATGTCTAGTAGACTAGTAATGAGC 57.285 37.037 26.60 1.20 45.27 4.26
2140 2414 7.712204 TCCTTTGAACTTAAAACAAGAACCT 57.288 32.000 0.00 0.00 0.00 3.50
2160 2434 8.826765 AGAACCTGATATATTCCAAATATCGGT 58.173 33.333 9.78 10.35 40.65 4.69
2161 2435 9.099454 GAACCTGATATATTCCAAATATCGGTC 57.901 37.037 14.26 4.62 39.51 4.79
2162 2436 8.146053 ACCTGATATATTCCAAATATCGGTCA 57.854 34.615 9.78 0.95 39.52 4.02
2163 2437 8.260818 ACCTGATATATTCCAAATATCGGTCAG 58.739 37.037 14.76 14.76 39.52 3.51
2164 2438 8.260818 CCTGATATATTCCAAATATCGGTCAGT 58.739 37.037 17.31 0.00 39.52 3.41
2170 2444 6.838198 TTCCAAATATCGGTCAGTAAATCG 57.162 37.500 0.00 0.00 0.00 3.34
2171 2445 5.294356 TCCAAATATCGGTCAGTAAATCGG 58.706 41.667 0.00 0.00 0.00 4.18
2172 2446 4.084013 CCAAATATCGGTCAGTAAATCGGC 60.084 45.833 0.00 0.00 0.00 5.54
2173 2447 4.330944 AATATCGGTCAGTAAATCGGCA 57.669 40.909 0.00 0.00 0.00 5.69
2174 2448 2.910688 ATCGGTCAGTAAATCGGCAT 57.089 45.000 0.00 0.00 0.00 4.40
2175 2449 2.218953 TCGGTCAGTAAATCGGCATC 57.781 50.000 0.00 0.00 0.00 3.91
2176 2450 1.754803 TCGGTCAGTAAATCGGCATCT 59.245 47.619 0.00 0.00 0.00 2.90
2177 2451 2.128035 CGGTCAGTAAATCGGCATCTC 58.872 52.381 0.00 0.00 0.00 2.75
2178 2452 2.223829 CGGTCAGTAAATCGGCATCTCT 60.224 50.000 0.00 0.00 0.00 3.10
2179 2453 3.126831 GGTCAGTAAATCGGCATCTCTG 58.873 50.000 0.00 0.00 0.00 3.35
2180 2454 3.430929 GGTCAGTAAATCGGCATCTCTGT 60.431 47.826 0.00 0.00 0.00 3.41
2217 2491 2.639839 CGGACCCCTCCTTGATATGAAT 59.360 50.000 0.00 0.00 33.79 2.57
2258 2532 2.035626 GGCTGGGCCTGTTAAGCA 59.964 61.111 14.00 0.00 46.69 3.91
2286 2566 1.442987 GCCCAAAACTGCTGCTGTT 59.557 52.632 17.65 17.65 0.00 3.16
2287 2567 0.877213 GCCCAAAACTGCTGCTGTTG 60.877 55.000 22.77 13.49 0.00 3.33
2288 2568 0.877213 CCCAAAACTGCTGCTGTTGC 60.877 55.000 22.77 0.00 40.20 4.17
2289 2569 0.103572 CCAAAACTGCTGCTGTTGCT 59.896 50.000 22.77 12.18 40.48 3.91
2290 2570 1.205657 CAAAACTGCTGCTGTTGCTG 58.794 50.000 22.77 18.54 40.48 4.41
2291 2571 0.819582 AAAACTGCTGCTGTTGCTGT 59.180 45.000 22.77 7.03 42.78 4.40
2292 2572 0.101759 AAACTGCTGCTGTTGCTGTG 59.898 50.000 22.77 0.00 41.24 3.66
2293 2573 2.050351 CTGCTGCTGTTGCTGTGC 60.050 61.111 0.00 0.00 39.81 4.57
2294 2574 2.517638 TGCTGCTGTTGCTGTGCT 60.518 55.556 0.00 0.00 39.81 4.40
2295 2575 2.050351 GCTGCTGTTGCTGTGCTG 60.050 61.111 0.00 0.00 39.81 4.41
2399 2679 1.001887 TGTGCCATGCTGATGCTGA 60.002 52.632 0.00 0.00 40.48 4.26
2480 2760 9.762933 AATTTAGAGCACACATTAATGTTTTGT 57.237 25.926 18.50 10.94 39.39 2.83
2510 2791 6.648879 TTTGCAGCTTTATAACACTTTCCT 57.351 33.333 0.00 0.00 0.00 3.36
2526 2808 6.490040 ACACTTTCCTTTGCTACATTATGTGT 59.510 34.615 8.26 0.00 44.95 3.72
2723 3005 7.118825 GCGGATATTGCATGCTATCATATGTAT 59.881 37.037 20.33 5.16 0.00 2.29
2812 3188 3.254166 CCAAGGAGATGGTTCTTTGTGTG 59.746 47.826 0.00 0.00 33.67 3.82
2946 3322 7.016153 ACTTATCACTGAACCACCTTGATTA 57.984 36.000 0.00 0.00 0.00 1.75
2953 3329 7.390440 TCACTGAACCACCTTGATTATTACAAG 59.610 37.037 0.00 0.00 42.72 3.16
2984 3360 8.846943 TCTGACTTGTAAGATTAGATTGCAAA 57.153 30.769 1.71 0.00 32.92 3.68
2993 3369 7.692460 AAGATTAGATTGCAAACATGTCTCA 57.308 32.000 1.71 0.00 0.00 3.27
3150 3526 8.601047 CTTCTGGAGGATCTTATCACCATATA 57.399 38.462 0.00 0.00 36.93 0.86
3151 3527 7.962995 TCTGGAGGATCTTATCACCATATAC 57.037 40.000 0.00 0.00 36.93 1.47
3166 3542 8.587952 TCACCATATACGTGAACTGATAAATG 57.412 34.615 0.00 0.00 37.31 2.32
3286 3672 4.014569 TGTATACACAGCTGAGCCAAAA 57.985 40.909 23.35 0.00 0.00 2.44
3389 3775 7.741785 TCACTGGACTACAAAAAGGAAGATAA 58.258 34.615 0.00 0.00 0.00 1.75
3497 3886 5.815740 TCCAGACACACTTCAAAGAACTTAC 59.184 40.000 0.00 0.00 0.00 2.34
3578 3967 4.301072 AATGCTAAGTAAAGCTCCACCA 57.699 40.909 0.00 0.00 43.19 4.17
3579 3968 3.780804 TGCTAAGTAAAGCTCCACCAA 57.219 42.857 0.00 0.00 43.19 3.67
3591 3980 2.815589 GCTCCACCAATTCCTCAACTGT 60.816 50.000 0.00 0.00 0.00 3.55
3725 4114 7.769044 TCTGCTAATAATACTGACCTTCCAAAC 59.231 37.037 0.00 0.00 0.00 2.93
3731 4120 1.421646 ACTGACCTTCCAAACCCTGAG 59.578 52.381 0.00 0.00 0.00 3.35
3764 4153 2.137523 GTTGCAGAAAACATTGCCAGG 58.862 47.619 0.00 0.00 39.54 4.45
3827 4216 3.583276 TACAGCACCGCAGAACCCG 62.583 63.158 0.00 0.00 0.00 5.28
3864 4253 1.203994 AGCCAAAGCATGACAGATTGC 59.796 47.619 0.00 0.00 43.56 3.56
3870 4259 0.247974 GCATGACAGATTGCTGACGC 60.248 55.000 0.00 0.00 45.17 5.19
3991 4383 5.415701 AGGTAGGTTTGTGCATAAGTTGATG 59.584 40.000 0.00 0.00 0.00 3.07
3992 4384 5.414454 GGTAGGTTTGTGCATAAGTTGATGA 59.586 40.000 0.00 0.00 0.00 2.92
3993 4385 6.095440 GGTAGGTTTGTGCATAAGTTGATGAT 59.905 38.462 0.00 0.00 0.00 2.45
4044 4436 2.969950 AGCGGCTATGTTATCCTTACCA 59.030 45.455 0.00 0.00 0.00 3.25
4045 4437 3.583086 AGCGGCTATGTTATCCTTACCAT 59.417 43.478 0.00 0.00 0.00 3.55
4083 4475 6.327781 ACCCCCTAAGAAATGTAAATGGTTT 58.672 36.000 0.00 0.00 0.00 3.27
4298 4690 9.846248 ATAAGCAACTGAAAATGATTAAGTGAC 57.154 29.630 0.00 0.00 31.95 3.67
4433 4845 4.487714 TGGACTTGGATCCATAACACTC 57.512 45.455 17.06 4.01 44.14 3.51
4434 4846 4.104086 TGGACTTGGATCCATAACACTCT 58.896 43.478 17.06 0.00 44.14 3.24
4435 4847 4.536090 TGGACTTGGATCCATAACACTCTT 59.464 41.667 17.06 0.00 44.14 2.85
4436 4848 5.014123 TGGACTTGGATCCATAACACTCTTT 59.986 40.000 17.06 0.00 44.14 2.52
4516 4928 8.622157 TCAAGATTGGTAATTTTTACGTGTCAA 58.378 29.630 0.00 0.00 0.00 3.18
4777 5216 5.080731 TGCGTCGGTTTAAACGAATAAATG 58.919 37.500 6.69 0.00 42.55 2.32
4783 5222 8.411928 GTCGGTTTAAACGAATAAATGAAACAC 58.588 33.333 6.69 0.00 42.55 3.32
4824 5278 3.652539 GATTCGAACCGCCGACCCA 62.653 63.158 0.00 0.00 38.39 4.51
4903 5357 5.985911 TCCAGGCTAGACAGTTTTTATACC 58.014 41.667 0.00 0.00 0.00 2.73
4912 5366 5.243060 AGACAGTTTTTATACCAGCCCAAAC 59.757 40.000 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.212631 TGTATAAGGGAATGGAGGGGGTA 59.787 47.826 0.00 0.00 0.00 3.69
3 4 2.713595 TGTATAAGGGAATGGAGGGGG 58.286 52.381 0.00 0.00 0.00 5.40
4 5 4.373156 CTTGTATAAGGGAATGGAGGGG 57.627 50.000 0.00 0.00 0.00 4.79
16 17 8.553459 AATCTGAGTTTGTGACCTTGTATAAG 57.447 34.615 0.00 0.00 0.00 1.73
17 18 9.431887 GTAATCTGAGTTTGTGACCTTGTATAA 57.568 33.333 0.00 0.00 0.00 0.98
18 19 8.590204 TGTAATCTGAGTTTGTGACCTTGTATA 58.410 33.333 0.00 0.00 0.00 1.47
19 20 7.450074 TGTAATCTGAGTTTGTGACCTTGTAT 58.550 34.615 0.00 0.00 0.00 2.29
20 21 6.822442 TGTAATCTGAGTTTGTGACCTTGTA 58.178 36.000 0.00 0.00 0.00 2.41
21 22 5.680619 TGTAATCTGAGTTTGTGACCTTGT 58.319 37.500 0.00 0.00 0.00 3.16
22 23 5.180117 CCTGTAATCTGAGTTTGTGACCTTG 59.820 44.000 0.00 0.00 0.00 3.61
23 24 5.163195 ACCTGTAATCTGAGTTTGTGACCTT 60.163 40.000 0.00 0.00 0.00 3.50
24 25 4.348168 ACCTGTAATCTGAGTTTGTGACCT 59.652 41.667 0.00 0.00 0.00 3.85
25 26 4.642429 ACCTGTAATCTGAGTTTGTGACC 58.358 43.478 0.00 0.00 0.00 4.02
26 27 5.638234 GGTACCTGTAATCTGAGTTTGTGAC 59.362 44.000 4.06 0.00 0.00 3.67
27 28 5.305902 TGGTACCTGTAATCTGAGTTTGTGA 59.694 40.000 14.36 0.00 0.00 3.58
28 29 5.547465 TGGTACCTGTAATCTGAGTTTGTG 58.453 41.667 14.36 0.00 0.00 3.33
29 30 5.818678 TGGTACCTGTAATCTGAGTTTGT 57.181 39.130 14.36 0.00 0.00 2.83
30 31 5.643777 CCTTGGTACCTGTAATCTGAGTTTG 59.356 44.000 14.36 0.00 0.00 2.93
31 32 5.309806 ACCTTGGTACCTGTAATCTGAGTTT 59.690 40.000 14.36 0.00 0.00 2.66
32 33 4.844655 ACCTTGGTACCTGTAATCTGAGTT 59.155 41.667 14.36 0.00 0.00 3.01
33 34 4.426704 ACCTTGGTACCTGTAATCTGAGT 58.573 43.478 14.36 0.00 0.00 3.41
34 35 6.540438 TTACCTTGGTACCTGTAATCTGAG 57.460 41.667 14.36 0.00 0.00 3.35
35 36 6.938698 TTTACCTTGGTACCTGTAATCTGA 57.061 37.500 14.36 1.42 0.00 3.27
36 37 8.575649 AATTTTACCTTGGTACCTGTAATCTG 57.424 34.615 14.36 0.00 0.00 2.90
42 43 8.799367 GTCATTAAATTTTACCTTGGTACCTGT 58.201 33.333 14.36 10.21 0.00 4.00
43 44 9.020731 AGTCATTAAATTTTACCTTGGTACCTG 57.979 33.333 14.36 5.99 0.00 4.00
44 45 9.020731 CAGTCATTAAATTTTACCTTGGTACCT 57.979 33.333 14.36 0.00 0.00 3.08
45 46 7.758076 GCAGTCATTAAATTTTACCTTGGTACC 59.242 37.037 4.43 4.43 0.00 3.34
46 47 8.520351 AGCAGTCATTAAATTTTACCTTGGTAC 58.480 33.333 0.00 0.00 0.00 3.34
47 48 8.644374 AGCAGTCATTAAATTTTACCTTGGTA 57.356 30.769 0.00 0.00 0.00 3.25
48 49 7.539034 AGCAGTCATTAAATTTTACCTTGGT 57.461 32.000 0.00 0.00 0.00 3.67
49 50 8.711457 CAAAGCAGTCATTAAATTTTACCTTGG 58.289 33.333 0.00 0.00 0.00 3.61
50 51 8.223100 GCAAAGCAGTCATTAAATTTTACCTTG 58.777 33.333 0.00 0.00 0.00 3.61
51 52 7.116233 CGCAAAGCAGTCATTAAATTTTACCTT 59.884 33.333 0.00 0.00 0.00 3.50
52 53 6.586082 CGCAAAGCAGTCATTAAATTTTACCT 59.414 34.615 0.00 0.00 0.00 3.08
53 54 6.584563 TCGCAAAGCAGTCATTAAATTTTACC 59.415 34.615 0.00 0.00 0.00 2.85
54 55 7.561237 TCGCAAAGCAGTCATTAAATTTTAC 57.439 32.000 0.00 0.00 0.00 2.01
55 56 7.795431 CTCGCAAAGCAGTCATTAAATTTTA 57.205 32.000 0.00 0.00 0.00 1.52
56 57 6.695292 CTCGCAAAGCAGTCATTAAATTTT 57.305 33.333 0.00 0.00 0.00 1.82
71 72 5.349824 AGAAGAAAAGTTAGCTCGCAAAG 57.650 39.130 0.00 0.00 0.00 2.77
72 73 4.084537 CGAGAAGAAAAGTTAGCTCGCAAA 60.085 41.667 0.00 0.00 38.73 3.68
73 74 3.428870 CGAGAAGAAAAGTTAGCTCGCAA 59.571 43.478 0.00 0.00 38.73 4.85
74 75 2.987149 CGAGAAGAAAAGTTAGCTCGCA 59.013 45.455 0.00 0.00 38.73 5.10
75 76 2.987821 ACGAGAAGAAAAGTTAGCTCGC 59.012 45.455 0.00 0.00 46.39 5.03
77 78 6.819437 GGTTAACGAGAAGAAAAGTTAGCTC 58.181 40.000 0.00 0.00 33.07 4.09
78 79 6.782298 GGTTAACGAGAAGAAAAGTTAGCT 57.218 37.500 0.00 0.00 33.07 3.32
90 91 7.601130 CATATTAATGATCCCGGTTAACGAGAA 59.399 37.037 0.00 0.00 39.19 2.87
91 92 7.094631 CATATTAATGATCCCGGTTAACGAGA 58.905 38.462 0.00 0.00 39.19 4.04
92 93 6.183360 GCATATTAATGATCCCGGTTAACGAG 60.183 42.308 0.00 0.00 39.19 4.18
93 94 5.640357 GCATATTAATGATCCCGGTTAACGA 59.360 40.000 0.00 0.00 39.19 3.85
94 95 5.163794 GGCATATTAATGATCCCGGTTAACG 60.164 44.000 0.00 0.00 37.56 3.18
95 96 5.124936 GGGCATATTAATGATCCCGGTTAAC 59.875 44.000 0.00 0.00 34.84 2.01
96 97 5.222151 TGGGCATATTAATGATCCCGGTTAA 60.222 40.000 0.00 0.00 37.92 2.01
97 98 4.289934 TGGGCATATTAATGATCCCGGTTA 59.710 41.667 0.00 0.00 37.92 2.85
98 99 3.075283 TGGGCATATTAATGATCCCGGTT 59.925 43.478 0.00 0.00 37.92 4.44
99 100 2.647299 TGGGCATATTAATGATCCCGGT 59.353 45.455 0.00 0.00 37.92 5.28
100 101 3.016736 GTGGGCATATTAATGATCCCGG 58.983 50.000 0.00 0.00 37.92 5.73
101 102 3.684908 TGTGGGCATATTAATGATCCCG 58.315 45.455 12.93 0.00 37.92 5.14
102 103 4.142093 GCATGTGGGCATATTAATGATCCC 60.142 45.833 11.60 11.60 36.45 3.85
103 104 4.463539 TGCATGTGGGCATATTAATGATCC 59.536 41.667 0.00 0.00 39.25 3.36
104 105 5.648178 TGCATGTGGGCATATTAATGATC 57.352 39.130 0.00 0.00 39.25 2.92
116 117 1.890625 TTCCTTGCATGCATGTGGGC 61.891 55.000 26.79 13.77 0.00 5.36
117 118 0.174845 CTTCCTTGCATGCATGTGGG 59.825 55.000 26.79 23.23 0.00 4.61
118 119 0.174845 CCTTCCTTGCATGCATGTGG 59.825 55.000 26.79 22.28 0.00 4.17
119 120 1.179152 TCCTTCCTTGCATGCATGTG 58.821 50.000 26.79 16.69 0.00 3.21
120 121 1.927487 TTCCTTCCTTGCATGCATGT 58.073 45.000 26.79 0.00 0.00 3.21
121 122 2.429250 TCATTCCTTCCTTGCATGCATG 59.571 45.455 23.37 23.21 0.00 4.06
122 123 2.693591 CTCATTCCTTCCTTGCATGCAT 59.306 45.455 23.37 0.00 0.00 3.96
123 124 2.097036 CTCATTCCTTCCTTGCATGCA 58.903 47.619 18.46 18.46 0.00 3.96
124 125 2.372264 TCTCATTCCTTCCTTGCATGC 58.628 47.619 11.82 11.82 0.00 4.06
125 126 3.380637 CCTTCTCATTCCTTCCTTGCATG 59.619 47.826 0.00 0.00 0.00 4.06
126 127 3.267812 TCCTTCTCATTCCTTCCTTGCAT 59.732 43.478 0.00 0.00 0.00 3.96
127 128 2.644299 TCCTTCTCATTCCTTCCTTGCA 59.356 45.455 0.00 0.00 0.00 4.08
128 129 3.356529 TCCTTCTCATTCCTTCCTTGC 57.643 47.619 0.00 0.00 0.00 4.01
129 130 6.847421 AATTTCCTTCTCATTCCTTCCTTG 57.153 37.500 0.00 0.00 0.00 3.61
130 131 7.470192 TGTAATTTCCTTCTCATTCCTTCCTT 58.530 34.615 0.00 0.00 0.00 3.36
131 132 7.032598 TGTAATTTCCTTCTCATTCCTTCCT 57.967 36.000 0.00 0.00 0.00 3.36
132 133 7.888250 ATGTAATTTCCTTCTCATTCCTTCC 57.112 36.000 0.00 0.00 0.00 3.46
133 134 9.620259 ACTATGTAATTTCCTTCTCATTCCTTC 57.380 33.333 0.00 0.00 0.00 3.46
134 135 9.401058 CACTATGTAATTTCCTTCTCATTCCTT 57.599 33.333 0.00 0.00 0.00 3.36
135 136 8.552296 ACACTATGTAATTTCCTTCTCATTCCT 58.448 33.333 0.00 0.00 0.00 3.36
136 137 8.738645 ACACTATGTAATTTCCTTCTCATTCC 57.261 34.615 0.00 0.00 0.00 3.01
137 138 9.383519 TGACACTATGTAATTTCCTTCTCATTC 57.616 33.333 0.00 0.00 0.00 2.67
138 139 9.911788 ATGACACTATGTAATTTCCTTCTCATT 57.088 29.630 0.00 0.00 0.00 2.57
139 140 9.911788 AATGACACTATGTAATTTCCTTCTCAT 57.088 29.630 0.00 0.00 26.81 2.90
155 156 8.939929 GCATGCATGTAGTTATAATGACACTAT 58.060 33.333 26.79 0.00 0.00 2.12
156 157 7.930865 TGCATGCATGTAGTTATAATGACACTA 59.069 33.333 26.79 0.00 0.00 2.74
157 158 6.767423 TGCATGCATGTAGTTATAATGACACT 59.233 34.615 26.79 0.00 0.00 3.55
158 159 6.958255 TGCATGCATGTAGTTATAATGACAC 58.042 36.000 26.79 5.79 0.00 3.67
159 160 7.282901 ACTTGCATGCATGTAGTTATAATGACA 59.717 33.333 31.27 9.33 33.44 3.58
160 161 7.642669 ACTTGCATGCATGTAGTTATAATGAC 58.357 34.615 31.27 6.83 33.44 3.06
161 162 7.806409 ACTTGCATGCATGTAGTTATAATGA 57.194 32.000 31.27 7.97 33.44 2.57
172 173 9.304731 CAACTTATTTAATACTTGCATGCATGT 57.695 29.630 33.40 33.40 37.87 3.21
173 174 8.270799 GCAACTTATTTAATACTTGCATGCATG 58.729 33.333 26.93 26.93 35.23 4.06
174 175 8.199449 AGCAACTTATTTAATACTTGCATGCAT 58.801 29.630 23.37 10.46 37.14 3.96
175 176 7.546358 AGCAACTTATTTAATACTTGCATGCA 58.454 30.769 18.46 18.46 37.14 3.96
176 177 7.992180 AGCAACTTATTTAATACTTGCATGC 57.008 32.000 11.82 11.82 37.14 4.06
189 190 8.919777 AGTTTCCTTGTAGTAGCAACTTATTT 57.080 30.769 0.00 0.00 37.15 1.40
190 191 8.919777 AAGTTTCCTTGTAGTAGCAACTTATT 57.080 30.769 0.00 0.00 37.15 1.40
191 192 8.919777 AAAGTTTCCTTGTAGTAGCAACTTAT 57.080 30.769 0.00 0.00 37.15 1.73
193 194 8.919777 ATAAAGTTTCCTTGTAGTAGCAACTT 57.080 30.769 0.00 0.00 37.15 2.66
194 195 8.919777 AATAAAGTTTCCTTGTAGTAGCAACT 57.080 30.769 0.00 0.00 39.91 3.16
221 222 9.869757 GCCACTAACATTAATCAAGGTAAAAAT 57.130 29.630 0.00 0.00 0.00 1.82
222 223 8.308207 GGCCACTAACATTAATCAAGGTAAAAA 58.692 33.333 0.00 0.00 0.00 1.94
223 224 7.672239 AGGCCACTAACATTAATCAAGGTAAAA 59.328 33.333 5.01 0.00 0.00 1.52
224 225 7.179269 AGGCCACTAACATTAATCAAGGTAAA 58.821 34.615 5.01 0.00 0.00 2.01
225 226 6.727394 AGGCCACTAACATTAATCAAGGTAA 58.273 36.000 5.01 0.00 0.00 2.85
226 227 6.321821 AGGCCACTAACATTAATCAAGGTA 57.678 37.500 5.01 0.00 0.00 3.08
227 228 5.193099 AGGCCACTAACATTAATCAAGGT 57.807 39.130 5.01 0.00 0.00 3.50
228 229 5.418840 ACAAGGCCACTAACATTAATCAAGG 59.581 40.000 5.01 0.00 0.00 3.61
229 230 6.515272 ACAAGGCCACTAACATTAATCAAG 57.485 37.500 5.01 0.00 0.00 3.02
230 231 9.337396 CTATACAAGGCCACTAACATTAATCAA 57.663 33.333 5.01 0.00 0.00 2.57
231 232 7.936847 CCTATACAAGGCCACTAACATTAATCA 59.063 37.037 5.01 0.00 38.97 2.57
232 233 8.324163 CCTATACAAGGCCACTAACATTAATC 57.676 38.462 5.01 0.00 38.97 1.75
246 247 7.763985 AAAATACATTTTGCACCTATACAAGGC 59.236 33.333 0.00 0.00 42.54 4.35
247 248 9.651913 AAAAATACATTTTGCACCTATACAAGG 57.348 29.630 0.86 0.00 44.33 3.61
254 255 9.853555 CAGTATGAAAAATACATTTTGCACCTA 57.146 29.630 9.74 0.00 45.34 3.08
255 256 7.818930 CCAGTATGAAAAATACATTTTGCACCT 59.181 33.333 9.74 6.84 45.34 4.00
256 257 7.412891 GCCAGTATGAAAAATACATTTTGCACC 60.413 37.037 9.74 5.02 45.34 5.01
257 258 7.412891 GGCCAGTATGAAAAATACATTTTGCAC 60.413 37.037 9.74 0.49 45.34 4.57
258 259 6.593382 GGCCAGTATGAAAAATACATTTTGCA 59.407 34.615 9.91 9.91 46.26 4.08
259 260 6.818142 AGGCCAGTATGAAAAATACATTTTGC 59.182 34.615 5.01 0.03 41.27 3.68
260 261 8.658609 CAAGGCCAGTATGAAAAATACATTTTG 58.341 33.333 5.01 0.00 41.27 2.44
261 262 8.374743 ACAAGGCCAGTATGAAAAATACATTTT 58.625 29.630 5.01 0.00 43.85 1.82
262 263 7.906327 ACAAGGCCAGTATGAAAAATACATTT 58.094 30.769 5.01 0.00 39.69 2.32
263 264 7.480760 ACAAGGCCAGTATGAAAAATACATT 57.519 32.000 5.01 0.00 39.69 2.71
264 265 8.766994 ATACAAGGCCAGTATGAAAAATACAT 57.233 30.769 17.19 0.00 39.69 2.29
265 266 9.688091 TTATACAAGGCCAGTATGAAAAATACA 57.312 29.630 23.61 4.93 39.69 2.29
267 268 9.349713 CCTTATACAAGGCCAGTATGAAAAATA 57.650 33.333 23.61 6.07 44.90 1.40
268 269 8.237811 CCTTATACAAGGCCAGTATGAAAAAT 57.762 34.615 23.61 6.86 44.90 1.82
269 270 7.639113 CCTTATACAAGGCCAGTATGAAAAA 57.361 36.000 23.61 13.03 44.90 1.94
295 296 8.924303 GCCCAAAATTTTTATACTCCCTCTATT 58.076 33.333 0.00 0.00 0.00 1.73
296 297 7.230712 CGCCCAAAATTTTTATACTCCCTCTAT 59.769 37.037 0.00 0.00 0.00 1.98
297 298 6.544564 CGCCCAAAATTTTTATACTCCCTCTA 59.455 38.462 0.00 0.00 0.00 2.43
298 299 5.359860 CGCCCAAAATTTTTATACTCCCTCT 59.640 40.000 0.00 0.00 0.00 3.69
299 300 5.451381 CCGCCCAAAATTTTTATACTCCCTC 60.451 44.000 0.00 0.00 0.00 4.30
300 301 4.404394 CCGCCCAAAATTTTTATACTCCCT 59.596 41.667 0.00 0.00 0.00 4.20
301 302 4.442332 CCCGCCCAAAATTTTTATACTCCC 60.442 45.833 0.00 0.00 0.00 4.30
302 303 4.442332 CCCCGCCCAAAATTTTTATACTCC 60.442 45.833 0.00 0.00 0.00 3.85
303 304 4.403113 TCCCCGCCCAAAATTTTTATACTC 59.597 41.667 0.00 0.00 0.00 2.59
304 305 4.354662 TCCCCGCCCAAAATTTTTATACT 58.645 39.130 0.00 0.00 0.00 2.12
305 306 4.739587 TCCCCGCCCAAAATTTTTATAC 57.260 40.909 0.00 0.00 0.00 1.47
314 315 2.524640 GGGTTTCCCCGCCCAAAA 60.525 61.111 0.00 0.00 42.41 2.44
453 455 1.552792 GGTTGGAGGTTGAGAGAGAGG 59.447 57.143 0.00 0.00 0.00 3.69
464 466 1.280421 GAGAGAATGCTGGTTGGAGGT 59.720 52.381 0.00 0.00 0.00 3.85
493 505 2.755103 CCTATGCTGGTTGGAGGTTTTC 59.245 50.000 0.00 0.00 0.00 2.29
497 509 1.561542 CTTCCTATGCTGGTTGGAGGT 59.438 52.381 0.00 0.00 0.00 3.85
596 611 0.884704 CCACTTGTCGGTGAGGTTGG 60.885 60.000 0.00 0.00 39.34 3.77
991 1006 6.333416 TCGAATTGTGAATTGTAGAGAGGAG 58.667 40.000 0.00 0.00 0.00 3.69
992 1007 6.280855 TCGAATTGTGAATTGTAGAGAGGA 57.719 37.500 0.00 0.00 0.00 3.71
993 1008 6.036517 CCTTCGAATTGTGAATTGTAGAGAGG 59.963 42.308 0.00 0.00 0.00 3.69
994 1009 6.456181 GCCTTCGAATTGTGAATTGTAGAGAG 60.456 42.308 0.00 0.00 0.00 3.20
995 1010 5.351465 GCCTTCGAATTGTGAATTGTAGAGA 59.649 40.000 0.00 0.00 0.00 3.10
996 1011 5.563842 GCCTTCGAATTGTGAATTGTAGAG 58.436 41.667 0.00 0.00 0.00 2.43
997 1012 4.092821 CGCCTTCGAATTGTGAATTGTAGA 59.907 41.667 0.00 0.00 38.10 2.59
1119 1212 2.127839 CTCCTGCAGGATCCGCTTA 58.872 57.895 35.11 11.19 44.46 3.09
1185 1278 1.552578 TCGGGATTGAAACCTCGAGA 58.447 50.000 15.71 0.00 0.00 4.04
1273 1367 3.489059 CGCCATTAAAATCAACGCCATCT 60.489 43.478 0.00 0.00 0.00 2.90
1412 1506 6.511416 TGCTCAAGATGTCTAGAATCTAAGC 58.489 40.000 23.92 23.92 40.30 3.09
1430 1530 0.461870 ACGCACACTCAGTTGCTCAA 60.462 50.000 9.40 0.00 0.00 3.02
1431 1531 1.143838 ACGCACACTCAGTTGCTCA 59.856 52.632 9.40 0.00 0.00 4.26
1493 1593 7.916914 TCATATGAGGCTATCAATGTCAATG 57.083 36.000 0.00 0.00 42.53 2.82
1494 1594 9.529823 AAATCATATGAGGCTATCAATGTCAAT 57.470 29.630 11.78 0.00 42.53 2.57
1533 1633 3.055385 TCAAAAATGTCCTCCTACTCGGG 60.055 47.826 0.00 0.00 0.00 5.14
1539 1639 3.073798 TGCCACTCAAAAATGTCCTCCTA 59.926 43.478 0.00 0.00 0.00 2.94
1683 1783 2.009774 CAGGGAAATTAGGACACAGCG 58.990 52.381 0.00 0.00 0.00 5.18
1723 1823 6.511444 GCAAGATTCATCAACAGCTCATAGAC 60.511 42.308 0.00 0.00 0.00 2.59
1725 1825 5.527951 AGCAAGATTCATCAACAGCTCATAG 59.472 40.000 0.00 0.00 0.00 2.23
1727 1827 4.270834 AGCAAGATTCATCAACAGCTCAT 58.729 39.130 0.00 0.00 0.00 2.90
1752 1852 7.605691 CAGCACATATATAAAAGGGGAGAAGAG 59.394 40.741 0.00 0.00 0.00 2.85
1769 1869 1.100510 CACTTGGCTGCAGCACATAT 58.899 50.000 37.63 20.33 44.36 1.78
1796 1896 9.597170 CTCAAACATATCTTCTTCTGAATCTCA 57.403 33.333 0.00 0.00 0.00 3.27
1847 1947 0.681887 CACTCCATGATGGCTGCCAA 60.682 55.000 27.24 10.96 36.95 4.52
1912 2012 9.816354 AACTGCATTTGAGTTGTACTTTATTTT 57.184 25.926 0.00 0.00 32.30 1.82
2160 2434 3.447229 TGACAGAGATGCCGATTTACTGA 59.553 43.478 0.00 0.00 0.00 3.41
2161 2435 3.785486 TGACAGAGATGCCGATTTACTG 58.215 45.455 0.00 0.00 0.00 2.74
2162 2436 3.449018 ACTGACAGAGATGCCGATTTACT 59.551 43.478 10.08 0.00 0.00 2.24
2163 2437 3.786635 ACTGACAGAGATGCCGATTTAC 58.213 45.455 10.08 0.00 0.00 2.01
2164 2438 4.471904 AACTGACAGAGATGCCGATTTA 57.528 40.909 10.08 0.00 0.00 1.40
2165 2439 3.340814 AACTGACAGAGATGCCGATTT 57.659 42.857 10.08 0.00 0.00 2.17
2166 2440 4.471904 TTAACTGACAGAGATGCCGATT 57.528 40.909 10.08 0.00 0.00 3.34
2167 2441 4.626042 GATTAACTGACAGAGATGCCGAT 58.374 43.478 10.08 0.00 0.00 4.18
2168 2442 3.489229 CGATTAACTGACAGAGATGCCGA 60.489 47.826 10.08 0.00 0.00 5.54
2169 2443 2.791560 CGATTAACTGACAGAGATGCCG 59.208 50.000 10.08 1.88 0.00 5.69
2170 2444 2.541762 GCGATTAACTGACAGAGATGCC 59.458 50.000 10.08 0.00 0.00 4.40
2171 2445 3.452474 AGCGATTAACTGACAGAGATGC 58.548 45.455 10.08 5.37 0.00 3.91
2172 2446 5.826586 AGTAGCGATTAACTGACAGAGATG 58.173 41.667 10.08 0.00 0.00 2.90
2173 2447 5.277586 CGAGTAGCGATTAACTGACAGAGAT 60.278 44.000 10.08 0.00 44.57 2.75
2174 2448 4.034163 CGAGTAGCGATTAACTGACAGAGA 59.966 45.833 10.08 0.00 44.57 3.10
2175 2449 4.275662 CGAGTAGCGATTAACTGACAGAG 58.724 47.826 10.08 0.00 44.57 3.35
2176 2450 3.064958 CCGAGTAGCGATTAACTGACAGA 59.935 47.826 10.08 0.00 44.57 3.41
2177 2451 3.064958 TCCGAGTAGCGATTAACTGACAG 59.935 47.826 0.00 0.00 44.57 3.51
2178 2452 3.011818 TCCGAGTAGCGATTAACTGACA 58.988 45.455 0.00 0.00 44.57 3.58
2179 2453 3.361414 GTCCGAGTAGCGATTAACTGAC 58.639 50.000 0.00 0.00 44.57 3.51
2180 2454 2.357009 GGTCCGAGTAGCGATTAACTGA 59.643 50.000 0.00 0.00 44.57 3.41
2286 2566 1.673337 GTCCAGCATCAGCACAGCA 60.673 57.895 0.00 0.00 45.49 4.41
2287 2567 1.030488 ATGTCCAGCATCAGCACAGC 61.030 55.000 0.00 0.00 45.49 4.40
2288 2568 1.460504 AATGTCCAGCATCAGCACAG 58.539 50.000 0.00 0.00 45.49 3.66
2289 2569 1.913778 AAATGTCCAGCATCAGCACA 58.086 45.000 0.00 0.00 45.49 4.57
2290 2570 3.628942 TGATAAATGTCCAGCATCAGCAC 59.371 43.478 0.00 0.00 45.49 4.40
2291 2571 3.888583 TGATAAATGTCCAGCATCAGCA 58.111 40.909 0.00 0.00 45.49 4.41
2292 2572 5.449107 AATGATAAATGTCCAGCATCAGC 57.551 39.130 0.00 0.00 36.67 4.26
2293 2573 6.802608 ACAAATGATAAATGTCCAGCATCAG 58.197 36.000 0.00 0.00 36.67 2.90
2294 2574 6.778834 ACAAATGATAAATGTCCAGCATCA 57.221 33.333 0.00 0.00 36.67 3.07
2295 2575 8.158169 TCTACAAATGATAAATGTCCAGCATC 57.842 34.615 0.00 0.00 36.67 3.91
2341 2621 6.605594 AGATGTAAACTCCTCTCCTCTTACAG 59.394 42.308 0.00 0.00 33.96 2.74
2399 2679 4.690767 AGATCTACATAGGGGAGATGCT 57.309 45.455 0.00 0.00 30.01 3.79
2510 2791 7.534085 GCTACTGTACACATAATGTAGCAAA 57.466 36.000 25.83 0.00 44.65 3.68
2579 2861 9.657728 AGGTTAACTAGGGCCATATCTATATAC 57.342 37.037 6.18 0.00 0.00 1.47
2764 3048 6.459670 TCATGGTCATAGTGTACGTAATGT 57.540 37.500 0.00 0.00 0.00 2.71
2765 3049 6.128822 GCATCATGGTCATAGTGTACGTAATG 60.129 42.308 0.00 0.00 0.00 1.90
2812 3188 3.508845 ATACCATACCACAGGGCAATC 57.491 47.619 0.00 0.00 37.90 2.67
2918 3294 6.042781 TCAAGGTGGTTCAGTGATAAGTAGTT 59.957 38.462 0.00 0.00 0.00 2.24
2919 3295 5.542635 TCAAGGTGGTTCAGTGATAAGTAGT 59.457 40.000 0.00 0.00 0.00 2.73
2946 3322 7.744087 TTACAAGTCAGATGTTGCTTGTAAT 57.256 32.000 18.71 0.00 46.57 1.89
2953 3329 7.834068 TCTAATCTTACAAGTCAGATGTTGC 57.166 36.000 0.00 0.00 29.78 4.17
2984 3360 9.896645 AGAACATAGATATTTTGTGAGACATGT 57.103 29.630 0.00 0.00 0.00 3.21
3011 3387 4.940654 CCCCAACAAAATGTGAACAAACTT 59.059 37.500 0.00 0.00 0.00 2.66
3166 3542 9.487790 TTGGTGGAAAAATCATGAAAAATAGTC 57.512 29.630 0.00 0.00 0.00 2.59
3177 3553 8.659527 AGGAAACTAAATTGGTGGAAAAATCAT 58.340 29.630 0.00 0.00 40.61 2.45
3184 3560 5.799827 CCAAGGAAACTAAATTGGTGGAA 57.200 39.130 0.00 0.00 42.68 3.53
3286 3672 1.990563 GCGTACTGCAACACGAATAGT 59.009 47.619 20.44 0.00 45.45 2.12
3497 3886 2.643551 AGAAACAGAATGGGGCGTATG 58.356 47.619 0.00 0.00 43.62 2.39
3563 3952 4.202567 TGAGGAATTGGTGGAGCTTTACTT 60.203 41.667 0.00 0.00 0.00 2.24
3578 3967 5.739935 GCCAATTGTCAACAGTTGAGGAATT 60.740 40.000 16.68 18.29 43.53 2.17
3579 3968 4.262164 GCCAATTGTCAACAGTTGAGGAAT 60.262 41.667 16.68 13.94 43.53 3.01
3591 3980 3.072915 TCCTCTTCAGAGCCAATTGTCAA 59.927 43.478 4.43 0.00 40.75 3.18
3708 4097 3.655777 TCAGGGTTTGGAAGGTCAGTATT 59.344 43.478 0.00 0.00 0.00 1.89
3725 4114 2.524306 ACTTCTGACTCTGACTCAGGG 58.476 52.381 4.19 4.19 38.07 4.45
3731 4120 3.377346 TCTGCAACTTCTGACTCTGAC 57.623 47.619 0.00 0.00 0.00 3.51
3764 4153 2.224402 GGGGATTACATCTGACTGAGCC 60.224 54.545 0.00 0.00 0.00 4.70
3827 4216 1.079503 GCTTCTGGATTGTGACGACC 58.920 55.000 0.00 0.00 0.00 4.79
3870 4259 1.980232 TCAGCCCAAATGCAGCCAG 60.980 57.895 0.00 0.00 0.00 4.85
3991 4383 1.273606 TGCAGGCGCTCCTCTTATATC 59.726 52.381 7.64 0.00 41.93 1.63
3992 4384 1.342074 TGCAGGCGCTCCTCTTATAT 58.658 50.000 7.64 0.00 41.93 0.86
3993 4385 1.342074 ATGCAGGCGCTCCTCTTATA 58.658 50.000 7.64 0.00 41.93 0.98
4083 4475 7.342026 TCCAACTTCATCTATAGCTAGACAACA 59.658 37.037 0.00 0.00 36.81 3.33
4326 4719 2.083774 CCTAATTCTGCGGTGAAAGCA 58.916 47.619 0.00 0.00 42.99 3.91
4432 4844 8.635765 ACTTCTATGCAATTTACTCCAAAAGA 57.364 30.769 0.00 0.00 0.00 2.52
4433 4845 9.774742 GTACTTCTATGCAATTTACTCCAAAAG 57.225 33.333 0.00 0.00 0.00 2.27
4434 4846 8.736244 GGTACTTCTATGCAATTTACTCCAAAA 58.264 33.333 0.00 0.00 0.00 2.44
4435 4847 7.885922 TGGTACTTCTATGCAATTTACTCCAAA 59.114 33.333 0.00 0.00 0.00 3.28
4436 4848 7.335924 GTGGTACTTCTATGCAATTTACTCCAA 59.664 37.037 0.00 0.00 0.00 3.53
4629 5044 5.708697 CGTACAAAGAAAGGGGGTTTTCTAT 59.291 40.000 1.84 0.00 44.43 1.98
4777 5216 6.347110 GCTCGATTCAATTTTGTTGTGTTTC 58.653 36.000 0.00 0.00 0.00 2.78
4783 5222 2.979151 TGCGCTCGATTCAATTTTGTTG 59.021 40.909 9.73 0.00 0.00 3.33
4798 5238 2.517450 CGGTTCGAATCCTGCGCTC 61.517 63.158 9.73 0.00 0.00 5.03
4824 5278 4.405671 ACTGCGCTGCTGAGCCAT 62.406 61.111 14.80 1.99 42.91 4.40
4871 5325 0.538584 TCTAGCCTGGAGTACGTCGA 59.461 55.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.