Multiple sequence alignment - TraesCS4B01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G180200 chr4B 100.000 5171 0 0 1 5171 394605711 394600541 0.000000e+00 9550.0
1 TraesCS4B01G180200 chr4B 87.654 81 10 0 4667 4747 480065589 480065669 1.530000e-15 95.3
2 TraesCS4B01G180200 chr4B 97.619 42 1 0 5130 5171 421709748 421709707 7.180000e-09 73.1
3 TraesCS4B01G180200 chr4B 97.436 39 1 0 5130 5168 338424001 338423963 3.340000e-07 67.6
4 TraesCS4B01G180200 chr4D 96.148 4050 105 24 738 4747 317540491 317536453 0.000000e+00 6567.0
5 TraesCS4B01G180200 chr4D 90.476 84 7 1 4748 4831 317536484 317536402 5.470000e-20 110.0
6 TraesCS4B01G180200 chr4D 83.495 103 15 2 4748 4849 90251776 90251877 1.530000e-15 95.3
7 TraesCS4B01G180200 chr4D 98.148 54 1 0 4874 4927 317536132 317536079 1.530000e-15 95.3
8 TraesCS4B01G180200 chr4D 83.495 103 15 2 4748 4849 423506236 423506337 1.530000e-15 95.3
9 TraesCS4B01G180200 chr4A 96.449 3154 78 15 1472 4600 157321084 157324228 0.000000e+00 5173.0
10 TraesCS4B01G180200 chr4A 91.738 702 31 5 738 1438 157320410 157321085 0.000000e+00 950.0
11 TraesCS4B01G180200 chr4A 96.296 54 2 0 4874 4927 157324485 157324538 7.130000e-14 89.8
12 TraesCS4B01G180200 chr4A 92.727 55 2 1 660 712 157320371 157320425 1.540000e-10 78.7
13 TraesCS4B01G180200 chr5B 97.398 538 13 1 1 537 553936269 553936806 0.000000e+00 915.0
14 TraesCS4B01G180200 chr5B 84.466 103 14 2 4748 4849 264540054 264539953 3.290000e-17 100.0
15 TraesCS4B01G180200 chr7B 97.026 538 13 2 1 537 729807105 729807640 0.000000e+00 902.0
16 TraesCS4B01G180200 chr7B 95.385 65 3 0 5065 5129 112110760 112110824 2.550000e-18 104.0
17 TraesCS4B01G180200 chr7B 84.466 103 14 2 4748 4849 299423095 299423196 3.290000e-17 100.0
18 TraesCS4B01G180200 chr7B 95.238 42 2 0 5130 5171 112110807 112110848 3.340000e-07 67.6
19 TraesCS4B01G180200 chr1D 95.539 538 23 1 1 537 462760117 462759580 0.000000e+00 859.0
20 TraesCS4B01G180200 chr1D 93.911 542 28 2 1 537 421073908 421073367 0.000000e+00 813.0
21 TraesCS4B01G180200 chr1B 94.424 538 28 2 1 537 675896491 675895955 0.000000e+00 826.0
22 TraesCS4B01G180200 chr6D 94.238 538 30 1 1 537 360332649 360332112 0.000000e+00 821.0
23 TraesCS4B01G180200 chr5D 94.052 538 31 1 1 537 551842412 551842949 0.000000e+00 815.0
24 TraesCS4B01G180200 chr3D 93.296 537 28 2 2 537 446078423 446078952 0.000000e+00 785.0
25 TraesCS4B01G180200 chr3D 93.846 65 4 0 5065 5129 380840009 380839945 1.180000e-16 99.0
26 TraesCS4B01G180200 chr5A 89.700 534 50 5 6 537 673926403 673925873 0.000000e+00 676.0
27 TraesCS4B01G180200 chr5A 90.789 76 7 0 4672 4747 427200817 427200892 9.160000e-18 102.0
28 TraesCS4B01G180200 chr5A 90.541 74 7 0 4674 4747 34691820 34691747 1.180000e-16 99.0
29 TraesCS4B01G180200 chr5A 83.495 103 15 2 4748 4849 145048177 145048278 1.530000e-15 95.3
30 TraesCS4B01G180200 chr2D 89.423 104 9 2 4747 4849 537529374 537529272 4.200000e-26 130.0
31 TraesCS4B01G180200 chr2D 90.789 76 5 2 4673 4747 506377074 506377000 3.290000e-17 100.0
32 TraesCS4B01G180200 chr3A 86.408 103 12 2 4748 4849 203164618 203164517 1.520000e-20 111.0
33 TraesCS4B01G180200 chr3A 85.437 103 13 2 4748 4849 363779049 363778948 7.080000e-19 106.0
34 TraesCS4B01G180200 chr3B 96.923 65 2 0 5065 5129 284665599 284665535 5.470000e-20 110.0
35 TraesCS4B01G180200 chr3B 95.238 42 2 0 5130 5171 284665552 284665511 3.340000e-07 67.6
36 TraesCS4B01G180200 chr2B 96.923 65 2 0 5065 5129 296753336 296753272 5.470000e-20 110.0
37 TraesCS4B01G180200 chr2B 93.846 65 4 0 5065 5129 302912195 302912131 1.180000e-16 99.0
38 TraesCS4B01G180200 chr2B 94.872 39 2 0 5130 5168 296753289 296753251 1.550000e-05 62.1
39 TraesCS4B01G180200 chr2A 85.437 103 13 2 4748 4849 590480737 590480838 7.080000e-19 106.0
40 TraesCS4B01G180200 chr2A 92.308 65 5 0 5065 5129 448532646 448532582 5.510000e-15 93.5
41 TraesCS4B01G180200 chrUn 90.541 74 7 0 4674 4747 50621290 50621363 1.180000e-16 99.0
42 TraesCS4B01G180200 chr7D 93.846 65 4 0 5065 5129 191500140 191500204 1.180000e-16 99.0
43 TraesCS4B01G180200 chr7A 93.846 65 4 0 5065 5129 166835615 166835679 1.180000e-16 99.0
44 TraesCS4B01G180200 chr7A 93.846 65 3 1 5065 5128 174841540 174841604 4.260000e-16 97.1
45 TraesCS4B01G180200 chr6A 90.541 74 7 0 4674 4747 359067032 359067105 1.180000e-16 99.0
46 TraesCS4B01G180200 chr1A 90.541 74 7 0 4671 4744 63835323 63835396 1.180000e-16 99.0
47 TraesCS4B01G180200 chr1A 90.541 74 7 0 4674 4747 65228462 65228389 1.180000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G180200 chr4B 394600541 394605711 5170 True 9550.000000 9550 100.0000 1 5171 1 chr4B.!!$R2 5170
1 TraesCS4B01G180200 chr4D 317536079 317540491 4412 True 2257.433333 6567 94.9240 738 4927 3 chr4D.!!$R1 4189
2 TraesCS4B01G180200 chr4A 157320371 157324538 4167 False 1572.875000 5173 94.3025 660 4927 4 chr4A.!!$F1 4267
3 TraesCS4B01G180200 chr5B 553936269 553936806 537 False 915.000000 915 97.3980 1 537 1 chr5B.!!$F1 536
4 TraesCS4B01G180200 chr7B 729807105 729807640 535 False 902.000000 902 97.0260 1 537 1 chr7B.!!$F2 536
5 TraesCS4B01G180200 chr1D 462759580 462760117 537 True 859.000000 859 95.5390 1 537 1 chr1D.!!$R2 536
6 TraesCS4B01G180200 chr1D 421073367 421073908 541 True 813.000000 813 93.9110 1 537 1 chr1D.!!$R1 536
7 TraesCS4B01G180200 chr1B 675895955 675896491 536 True 826.000000 826 94.4240 1 537 1 chr1B.!!$R1 536
8 TraesCS4B01G180200 chr6D 360332112 360332649 537 True 821.000000 821 94.2380 1 537 1 chr6D.!!$R1 536
9 TraesCS4B01G180200 chr5D 551842412 551842949 537 False 815.000000 815 94.0520 1 537 1 chr5D.!!$F1 536
10 TraesCS4B01G180200 chr3D 446078423 446078952 529 False 785.000000 785 93.2960 2 537 1 chr3D.!!$F1 535
11 TraesCS4B01G180200 chr5A 673925873 673926403 530 True 676.000000 676 89.7000 6 537 1 chr5A.!!$R2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 551 0.036010 CGTGTCCTCCCTTGCTTGAT 60.036 55.000 0.00 0.00 0.00 2.57 F
638 645 0.106619 AATCGAGCCGGAGACCTAGT 60.107 55.000 5.05 0.00 0.00 2.57 F
641 648 0.179134 CGAGCCGGAGACCTAGTTTG 60.179 60.000 5.05 0.00 0.00 2.93 F
714 721 0.179225 CAGGAACCGAACGCGATTTG 60.179 55.000 15.93 7.41 40.82 2.32 F
720 727 0.236187 CCGAACGCGATTTGGTTCAA 59.764 50.000 15.93 0.00 41.97 2.69 F
935 944 1.144276 GGAGCTAGGGTTTCGCCTC 59.856 63.158 0.00 0.00 37.43 4.70 F
2662 2685 0.370273 GTGATTTACAGCCGCAGACG 59.630 55.000 0.00 0.00 39.67 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 2420 1.149101 TTTCCTTCCAGCAGGACCTT 58.851 50.000 0.00 0.00 45.73 3.50 R
2578 2601 1.300620 TGTTCTTCCAGCACGACCG 60.301 57.895 0.00 0.00 0.00 4.79 R
2629 2652 8.088365 GGCTGTAAATCACCATTAAAACTCTTT 58.912 33.333 0.00 0.00 0.00 2.52 R
2656 2679 2.973945 AGAATTTCTGGGTACGTCTGC 58.026 47.619 0.00 0.00 0.00 4.26 R
2662 2685 3.934068 TGACCGAAGAATTTCTGGGTAC 58.066 45.455 17.69 13.17 35.19 3.34 R
2803 2826 2.589157 ATCGTCGAGTGCCCCCAAA 61.589 57.895 0.00 0.00 0.00 3.28 R
4237 4275 0.034186 TCATGACAATGGTGGAGGCC 60.034 55.000 0.00 0.00 34.30 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.277842 ACGATACATGCAGGTGGTTCA 59.722 47.619 15.48 0.00 0.00 3.18
93 94 1.073923 AGGTGGTTCATCAGTCCAACC 59.926 52.381 0.00 0.00 39.51 3.77
206 211 9.159254 TCCCAATTGATGTAACAGTATCTAGAT 57.841 33.333 10.73 10.73 0.00 1.98
370 376 2.447443 CCTCCATAGCCGTAGCATCTA 58.553 52.381 0.00 0.00 43.56 1.98
495 502 7.096230 GCAGCGTCAACATTTACTTTAACAAAT 60.096 33.333 0.00 0.00 0.00 2.32
507 514 6.800072 ACTTTAACAAATTTTGGGTCTGGA 57.200 33.333 13.42 0.00 34.12 3.86
537 544 0.325296 TATGCTCCGTGTCCTCCCTT 60.325 55.000 0.00 0.00 0.00 3.95
538 545 1.903877 ATGCTCCGTGTCCTCCCTTG 61.904 60.000 0.00 0.00 0.00 3.61
539 546 2.266055 CTCCGTGTCCTCCCTTGC 59.734 66.667 0.00 0.00 0.00 4.01
540 547 2.203788 TCCGTGTCCTCCCTTGCT 60.204 61.111 0.00 0.00 0.00 3.91
541 548 1.831652 CTCCGTGTCCTCCCTTGCTT 61.832 60.000 0.00 0.00 0.00 3.91
542 549 1.672356 CCGTGTCCTCCCTTGCTTG 60.672 63.158 0.00 0.00 0.00 4.01
543 550 1.371183 CGTGTCCTCCCTTGCTTGA 59.629 57.895 0.00 0.00 0.00 3.02
544 551 0.036010 CGTGTCCTCCCTTGCTTGAT 60.036 55.000 0.00 0.00 0.00 2.57
545 552 1.611673 CGTGTCCTCCCTTGCTTGATT 60.612 52.381 0.00 0.00 0.00 2.57
546 553 2.519013 GTGTCCTCCCTTGCTTGATTT 58.481 47.619 0.00 0.00 0.00 2.17
547 554 2.229784 GTGTCCTCCCTTGCTTGATTTG 59.770 50.000 0.00 0.00 0.00 2.32
548 555 2.158475 TGTCCTCCCTTGCTTGATTTGT 60.158 45.455 0.00 0.00 0.00 2.83
549 556 2.229784 GTCCTCCCTTGCTTGATTTGTG 59.770 50.000 0.00 0.00 0.00 3.33
550 557 1.067354 CCTCCCTTGCTTGATTTGTGC 60.067 52.381 0.00 0.00 0.00 4.57
551 558 1.891150 CTCCCTTGCTTGATTTGTGCT 59.109 47.619 0.00 0.00 0.00 4.40
552 559 2.298163 CTCCCTTGCTTGATTTGTGCTT 59.702 45.455 0.00 0.00 0.00 3.91
553 560 2.297033 TCCCTTGCTTGATTTGTGCTTC 59.703 45.455 0.00 0.00 0.00 3.86
554 561 2.036217 CCCTTGCTTGATTTGTGCTTCA 59.964 45.455 0.00 0.00 0.00 3.02
555 562 3.314553 CCTTGCTTGATTTGTGCTTCAG 58.685 45.455 0.00 0.00 0.00 3.02
556 563 3.243636 CCTTGCTTGATTTGTGCTTCAGT 60.244 43.478 0.00 0.00 0.00 3.41
557 564 3.631145 TGCTTGATTTGTGCTTCAGTC 57.369 42.857 0.00 0.00 0.00 3.51
558 565 2.031769 TGCTTGATTTGTGCTTCAGTCG 60.032 45.455 0.00 0.00 0.00 4.18
559 566 2.578495 CTTGATTTGTGCTTCAGTCGC 58.422 47.619 0.00 0.00 0.00 5.19
560 567 0.874390 TGATTTGTGCTTCAGTCGCC 59.126 50.000 0.00 0.00 0.00 5.54
561 568 1.160137 GATTTGTGCTTCAGTCGCCT 58.840 50.000 0.00 0.00 0.00 5.52
562 569 0.877071 ATTTGTGCTTCAGTCGCCTG 59.123 50.000 0.00 0.00 40.25 4.85
563 570 1.785041 TTTGTGCTTCAGTCGCCTGC 61.785 55.000 0.00 0.00 38.66 4.85
564 571 2.666190 GTGCTTCAGTCGCCTGCA 60.666 61.111 0.00 0.00 38.66 4.41
565 572 2.110835 TGCTTCAGTCGCCTGCAA 59.889 55.556 0.00 0.00 38.66 4.08
566 573 1.525765 TGCTTCAGTCGCCTGCAAA 60.526 52.632 0.00 0.00 38.66 3.68
567 574 1.208614 GCTTCAGTCGCCTGCAAAG 59.791 57.895 0.00 0.00 38.66 2.77
568 575 1.510480 GCTTCAGTCGCCTGCAAAGT 61.510 55.000 0.00 0.00 38.66 2.66
569 576 0.514691 CTTCAGTCGCCTGCAAAGTC 59.485 55.000 0.00 0.00 38.66 3.01
570 577 0.884704 TTCAGTCGCCTGCAAAGTCC 60.885 55.000 0.00 0.00 38.66 3.85
571 578 1.597854 CAGTCGCCTGCAAAGTCCA 60.598 57.895 0.00 0.00 0.00 4.02
572 579 1.148273 AGTCGCCTGCAAAGTCCAA 59.852 52.632 0.00 0.00 0.00 3.53
573 580 0.465460 AGTCGCCTGCAAAGTCCAAA 60.465 50.000 0.00 0.00 0.00 3.28
574 581 0.383949 GTCGCCTGCAAAGTCCAAAA 59.616 50.000 0.00 0.00 0.00 2.44
575 582 1.107114 TCGCCTGCAAAGTCCAAAAA 58.893 45.000 0.00 0.00 0.00 1.94
576 583 1.686052 TCGCCTGCAAAGTCCAAAAAT 59.314 42.857 0.00 0.00 0.00 1.82
577 584 2.061028 CGCCTGCAAAGTCCAAAAATC 58.939 47.619 0.00 0.00 0.00 2.17
578 585 2.288395 CGCCTGCAAAGTCCAAAAATCT 60.288 45.455 0.00 0.00 0.00 2.40
579 586 3.062042 GCCTGCAAAGTCCAAAAATCTG 58.938 45.455 0.00 0.00 0.00 2.90
580 587 3.243839 GCCTGCAAAGTCCAAAAATCTGA 60.244 43.478 0.00 0.00 0.00 3.27
581 588 4.301628 CCTGCAAAGTCCAAAAATCTGAC 58.698 43.478 0.00 0.00 0.00 3.51
582 589 4.202141 CCTGCAAAGTCCAAAAATCTGACA 60.202 41.667 0.00 0.00 0.00 3.58
583 590 5.510179 CCTGCAAAGTCCAAAAATCTGACAT 60.510 40.000 0.00 0.00 0.00 3.06
584 591 5.291178 TGCAAAGTCCAAAAATCTGACATG 58.709 37.500 0.00 0.00 0.00 3.21
585 592 5.068855 TGCAAAGTCCAAAAATCTGACATGA 59.931 36.000 0.00 0.00 0.00 3.07
586 593 5.632347 GCAAAGTCCAAAAATCTGACATGAG 59.368 40.000 0.00 0.00 0.00 2.90
587 594 6.515531 GCAAAGTCCAAAAATCTGACATGAGA 60.516 38.462 0.00 0.00 0.00 3.27
588 595 7.600065 CAAAGTCCAAAAATCTGACATGAGAT 58.400 34.615 0.00 0.00 33.91 2.75
589 596 7.771927 AAGTCCAAAAATCTGACATGAGATT 57.228 32.000 0.00 1.30 43.24 2.40
598 605 7.396540 AATCTGACATGAGATTTTTACCACC 57.603 36.000 0.00 0.00 39.23 4.61
599 606 6.126863 TCTGACATGAGATTTTTACCACCT 57.873 37.500 0.00 0.00 0.00 4.00
600 607 5.939883 TCTGACATGAGATTTTTACCACCTG 59.060 40.000 0.00 0.00 0.00 4.00
601 608 5.630121 TGACATGAGATTTTTACCACCTGT 58.370 37.500 0.00 0.00 0.00 4.00
602 609 6.068010 TGACATGAGATTTTTACCACCTGTT 58.932 36.000 0.00 0.00 0.00 3.16
603 610 6.549364 TGACATGAGATTTTTACCACCTGTTT 59.451 34.615 0.00 0.00 0.00 2.83
604 611 7.069331 TGACATGAGATTTTTACCACCTGTTTT 59.931 33.333 0.00 0.00 0.00 2.43
605 612 7.791029 ACATGAGATTTTTACCACCTGTTTTT 58.209 30.769 0.00 0.00 0.00 1.94
627 634 4.666928 TTTTTAACACGGTAATCGAGCC 57.333 40.909 0.00 0.00 42.43 4.70
632 639 3.428797 CGGTAATCGAGCCGGAGA 58.571 61.111 5.05 0.25 43.85 3.71
633 640 1.008767 CGGTAATCGAGCCGGAGAC 60.009 63.158 5.05 0.00 43.85 3.36
634 641 1.363080 GGTAATCGAGCCGGAGACC 59.637 63.158 5.05 0.00 0.00 3.85
635 642 1.108132 GGTAATCGAGCCGGAGACCT 61.108 60.000 5.05 0.00 0.00 3.85
636 643 1.602311 GTAATCGAGCCGGAGACCTA 58.398 55.000 5.05 0.00 0.00 3.08
637 644 1.536331 GTAATCGAGCCGGAGACCTAG 59.464 57.143 5.05 0.00 0.00 3.02
638 645 0.106619 AATCGAGCCGGAGACCTAGT 60.107 55.000 5.05 0.00 0.00 2.57
639 646 0.106619 ATCGAGCCGGAGACCTAGTT 60.107 55.000 5.05 0.00 0.00 2.24
640 647 0.323178 TCGAGCCGGAGACCTAGTTT 60.323 55.000 5.05 0.00 0.00 2.66
641 648 0.179134 CGAGCCGGAGACCTAGTTTG 60.179 60.000 5.05 0.00 0.00 2.93
642 649 1.183549 GAGCCGGAGACCTAGTTTGA 58.816 55.000 5.05 0.00 0.00 2.69
643 650 1.135333 GAGCCGGAGACCTAGTTTGAG 59.865 57.143 5.05 0.00 0.00 3.02
644 651 0.896226 GCCGGAGACCTAGTTTGAGT 59.104 55.000 5.05 0.00 0.00 3.41
645 652 1.404315 GCCGGAGACCTAGTTTGAGTG 60.404 57.143 5.05 0.00 0.00 3.51
646 653 2.168496 CCGGAGACCTAGTTTGAGTGA 58.832 52.381 0.00 0.00 0.00 3.41
647 654 2.164624 CCGGAGACCTAGTTTGAGTGAG 59.835 54.545 0.00 0.00 0.00 3.51
648 655 2.820787 CGGAGACCTAGTTTGAGTGAGT 59.179 50.000 0.00 0.00 0.00 3.41
649 656 4.008330 CGGAGACCTAGTTTGAGTGAGTA 58.992 47.826 0.00 0.00 0.00 2.59
650 657 4.095185 CGGAGACCTAGTTTGAGTGAGTAG 59.905 50.000 0.00 0.00 0.00 2.57
651 658 4.142337 GGAGACCTAGTTTGAGTGAGTAGC 60.142 50.000 0.00 0.00 0.00 3.58
652 659 4.668636 AGACCTAGTTTGAGTGAGTAGCT 58.331 43.478 0.00 0.00 0.00 3.32
653 660 4.703093 AGACCTAGTTTGAGTGAGTAGCTC 59.297 45.833 0.00 0.00 0.00 4.09
654 661 4.668636 ACCTAGTTTGAGTGAGTAGCTCT 58.331 43.478 0.00 0.00 34.30 4.09
655 662 4.461081 ACCTAGTTTGAGTGAGTAGCTCTG 59.539 45.833 0.00 0.00 34.30 3.35
656 663 3.951775 AGTTTGAGTGAGTAGCTCTGG 57.048 47.619 0.00 0.00 34.30 3.86
657 664 2.028567 AGTTTGAGTGAGTAGCTCTGGC 60.029 50.000 0.00 0.00 39.06 4.85
658 665 0.528017 TTGAGTGAGTAGCTCTGGCG 59.472 55.000 0.00 0.00 44.37 5.69
688 695 2.158813 TCGAGCCTGAGACCAAGTTTTT 60.159 45.455 0.00 0.00 0.00 1.94
697 704 4.094294 TGAGACCAAGTTTTTCACGTTCAG 59.906 41.667 0.00 0.00 0.00 3.02
700 707 3.759618 ACCAAGTTTTTCACGTTCAGGAA 59.240 39.130 0.00 0.00 0.00 3.36
701 708 4.102649 CCAAGTTTTTCACGTTCAGGAAC 58.897 43.478 2.07 2.07 37.92 3.62
702 709 4.102649 CAAGTTTTTCACGTTCAGGAACC 58.897 43.478 6.59 0.00 38.03 3.62
703 710 2.353579 AGTTTTTCACGTTCAGGAACCG 59.646 45.455 6.59 4.90 38.03 4.44
704 711 2.312722 TTTTCACGTTCAGGAACCGA 57.687 45.000 6.59 1.44 38.03 4.69
705 712 2.312722 TTTCACGTTCAGGAACCGAA 57.687 45.000 6.59 6.99 38.03 4.30
706 713 1.574134 TTCACGTTCAGGAACCGAAC 58.426 50.000 6.59 13.93 39.50 3.95
709 716 2.851104 GTTCAGGAACCGAACGCG 59.149 61.111 3.53 3.53 33.98 6.01
710 717 1.662446 GTTCAGGAACCGAACGCGA 60.662 57.895 15.93 0.00 40.82 5.87
711 718 1.012486 GTTCAGGAACCGAACGCGAT 61.012 55.000 15.93 0.00 40.82 4.58
712 719 0.320073 TTCAGGAACCGAACGCGATT 60.320 50.000 15.93 2.74 40.82 3.34
713 720 0.320073 TCAGGAACCGAACGCGATTT 60.320 50.000 15.93 0.00 40.82 2.17
714 721 0.179225 CAGGAACCGAACGCGATTTG 60.179 55.000 15.93 7.41 40.82 2.32
715 722 1.133869 GGAACCGAACGCGATTTGG 59.866 57.895 15.93 18.54 46.51 3.28
718 725 4.737601 CCGAACGCGATTTGGTTC 57.262 55.556 15.93 3.58 40.82 3.62
719 726 1.863491 CCGAACGCGATTTGGTTCA 59.137 52.632 15.93 0.00 41.97 3.18
720 727 0.236187 CCGAACGCGATTTGGTTCAA 59.764 50.000 15.93 0.00 41.97 2.69
721 728 1.334239 CCGAACGCGATTTGGTTCAAA 60.334 47.619 15.93 0.00 41.97 2.69
722 729 2.376956 CGAACGCGATTTGGTTCAAAA 58.623 42.857 15.93 0.00 41.97 2.44
723 730 2.784380 CGAACGCGATTTGGTTCAAAAA 59.216 40.909 15.93 0.00 41.97 1.94
932 941 2.202892 CGGGAGCTAGGGTTTCGC 60.203 66.667 0.00 0.00 0.00 4.70
933 942 2.189784 GGGAGCTAGGGTTTCGCC 59.810 66.667 0.00 0.00 0.00 5.54
934 943 2.368011 GGGAGCTAGGGTTTCGCCT 61.368 63.158 0.00 0.00 37.43 5.52
935 944 1.144276 GGAGCTAGGGTTTCGCCTC 59.856 63.158 0.00 0.00 37.43 4.70
936 945 1.144276 GAGCTAGGGTTTCGCCTCC 59.856 63.158 0.00 0.00 37.43 4.30
937 946 2.189784 GCTAGGGTTTCGCCTCCC 59.810 66.667 0.00 0.00 43.71 4.30
938 947 2.908796 CTAGGGTTTCGCCTCCCC 59.091 66.667 5.29 0.00 44.40 4.81
939 948 1.993391 CTAGGGTTTCGCCTCCCCA 60.993 63.158 0.00 0.00 44.40 4.96
940 949 2.253403 CTAGGGTTTCGCCTCCCCAC 62.253 65.000 0.00 0.00 44.40 4.61
941 950 4.735358 GGGTTTCGCCTCCCCACC 62.735 72.222 0.00 0.00 38.37 4.61
942 951 4.735358 GGTTTCGCCTCCCCACCC 62.735 72.222 0.00 0.00 0.00 4.61
1164 1187 3.465296 CTACTCGGCGCGGTACCTG 62.465 68.421 15.06 4.84 0.00 4.00
1317 1340 2.422479 TCTGCACCTATATCCGATACGC 59.578 50.000 0.00 0.00 0.00 4.42
1319 1342 1.202382 GCACCTATATCCGATACGCCC 60.202 57.143 0.00 0.00 0.00 6.13
1336 1359 1.392589 CCCCCATGTATGTGTTGCTC 58.607 55.000 0.00 0.00 0.00 4.26
1372 1395 4.102210 TGTGCCCTCAATTTTTGGATTGAA 59.898 37.500 2.42 0.00 43.35 2.69
1408 1431 4.644163 TCTAGAGGCTAGATACCTGGTC 57.356 50.000 0.63 0.00 37.77 4.02
1415 1438 3.100671 GCTAGATACCTGGTCCTATGGG 58.899 54.545 0.63 0.00 0.00 4.00
1418 1441 1.978580 GATACCTGGTCCTATGGGTGG 59.021 57.143 0.63 0.00 33.74 4.61
1438 1461 6.330278 GGTGGATTTGTTAGGTTTATGCTTC 58.670 40.000 0.00 0.00 0.00 3.86
1480 1503 5.249393 AGGGTGATATGGTCATTATGAGGTC 59.751 44.000 0.00 0.00 39.48 3.85
1486 1509 2.236146 TGGTCATTATGAGGTCGCTGTT 59.764 45.455 0.00 0.00 0.00 3.16
1505 1528 6.223120 GCTGTTCCTATTGGTTGATTTGTTT 58.777 36.000 0.00 0.00 34.23 2.83
1561 1584 1.741706 CAATTTGTGCTCGAGGCTGAT 59.258 47.619 15.58 0.00 42.39 2.90
1813 1836 9.624697 TTGATATGAAGTGTATGTTTCTTTTGC 57.375 29.630 0.00 0.00 0.00 3.68
2038 2061 2.287248 GCCTGACTTGAAGCTTGTTGTC 60.287 50.000 2.10 9.38 0.00 3.18
2578 2601 1.449246 AAGTGCGCATCAGAGAGCC 60.449 57.895 15.91 0.00 33.05 4.70
2629 2652 3.118408 AGTGCTTCAGGTTGTACACAGAA 60.118 43.478 0.00 0.00 0.00 3.02
2656 2679 5.949735 AGTTTTAATGGTGATTTACAGCCG 58.050 37.500 0.00 0.00 45.18 5.52
2662 2685 0.370273 GTGATTTACAGCCGCAGACG 59.630 55.000 0.00 0.00 39.67 4.18
2728 2751 4.759183 ACTCTGAAGAAGCTTGGAATTGAC 59.241 41.667 2.10 0.00 0.00 3.18
2731 2754 3.498397 TGAAGAAGCTTGGAATTGACGAC 59.502 43.478 2.10 0.00 0.00 4.34
2803 2826 3.308473 GGGCCTTGGAAGTTCTGAACTAT 60.308 47.826 22.30 12.91 41.91 2.12
2967 2991 6.162079 CCATGCTATCAGGTATGTCAACTAG 58.838 44.000 0.00 0.00 0.00 2.57
2991 3015 5.589192 CAATTCCTCTCTCCAAATTGCATC 58.411 41.667 0.00 0.00 33.74 3.91
3146 3170 1.378531 TTGTCACCAGCAACTGTCAC 58.621 50.000 0.00 0.00 0.00 3.67
3158 3182 2.591429 TGTCACGCACCTGGCTTG 60.591 61.111 0.00 0.00 42.75 4.01
3160 3184 1.301401 GTCACGCACCTGGCTTGTA 60.301 57.895 0.00 0.00 42.08 2.41
3161 3185 1.005037 TCACGCACCTGGCTTGTAG 60.005 57.895 0.00 0.00 42.08 2.74
3450 3476 7.538575 CATACAAGCAAAACAGTAAGCCTATT 58.461 34.615 0.00 0.00 0.00 1.73
3463 3489 8.934697 ACAGTAAGCCTATTACCATTCTCATTA 58.065 33.333 0.00 0.00 0.00 1.90
3464 3490 9.778741 CAGTAAGCCTATTACCATTCTCATTAA 57.221 33.333 0.00 0.00 0.00 1.40
3477 3503 6.016777 CCATTCTCATTAAATCTACACCTGGC 60.017 42.308 0.00 0.00 0.00 4.85
3479 3505 4.721776 TCTCATTAAATCTACACCTGGCCT 59.278 41.667 3.32 0.00 0.00 5.19
3491 3517 1.075374 ACCTGGCCTGACTGCAATTTA 59.925 47.619 11.88 0.00 0.00 1.40
3988 4015 7.008941 AGAGTGGTAAGTCCTTGTCTAAAGTA 58.991 38.462 0.00 0.00 37.07 2.24
4004 4038 9.179909 TGTCTAAAGTAAAACTTGTCCAATTGA 57.820 29.630 7.12 0.00 38.66 2.57
4235 4273 1.956477 GGCTTTGGACATCACTGTTGT 59.044 47.619 0.00 0.00 35.14 3.32
4236 4274 2.362077 GGCTTTGGACATCACTGTTGTT 59.638 45.455 0.00 0.00 35.14 2.83
4237 4275 3.374745 GCTTTGGACATCACTGTTGTTG 58.625 45.455 0.00 0.00 35.14 3.33
4385 4432 4.776308 TCCCTCTTTTAGAAGGTGTAGGTC 59.224 45.833 0.00 0.00 33.56 3.85
4408 4455 9.203421 GGTCATCATACATTAATTATGTGTCGA 57.797 33.333 7.15 6.64 46.81 4.20
4509 4556 4.090066 GCTGACATCGTACTGTGTTTACTG 59.910 45.833 2.15 0.00 0.00 2.74
4510 4557 5.190992 TGACATCGTACTGTGTTTACTGT 57.809 39.130 2.15 0.00 41.21 3.55
4555 4602 5.970640 ACTAGTCAGGAAATTAATCCCTCCA 59.029 40.000 11.68 0.04 40.59 3.86
4559 4606 4.106341 TCAGGAAATTAATCCCTCCATCCC 59.894 45.833 11.68 0.00 40.59 3.85
4623 4722 3.638627 CCACTACATGCTCTCAGGATACA 59.361 47.826 0.00 0.00 41.41 2.29
4636 4735 3.055385 TCAGGATACAGCCACTGTTTACC 60.055 47.826 5.44 7.33 42.59 2.85
4687 4817 0.118346 TGGCCTACTCCCTCCTTTCA 59.882 55.000 3.32 0.00 0.00 2.69
4699 4829 3.716872 CCCTCCTTTCATGTGTATAGGGT 59.283 47.826 13.66 0.00 38.09 4.34
4701 4831 4.202367 CCTCCTTTCATGTGTATAGGGTCC 60.202 50.000 0.00 0.00 0.00 4.46
4717 4847 1.401018 GGTCCAATGCGTTTTTCGAGG 60.401 52.381 0.00 0.00 42.86 4.63
4718 4848 0.239879 TCCAATGCGTTTTTCGAGGC 59.760 50.000 0.00 0.00 42.86 4.70
4719 4849 0.240945 CCAATGCGTTTTTCGAGGCT 59.759 50.000 0.00 0.00 42.86 4.58
4720 4850 1.466950 CCAATGCGTTTTTCGAGGCTA 59.533 47.619 0.00 0.00 42.86 3.93
4721 4851 2.095466 CCAATGCGTTTTTCGAGGCTAA 60.095 45.455 0.00 0.00 42.86 3.09
4722 4852 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
4723 4853 1.873698 TGCGTTTTTCGAGGCTAACT 58.126 45.000 0.00 0.00 42.86 2.24
4724 4854 2.215196 TGCGTTTTTCGAGGCTAACTT 58.785 42.857 0.00 0.00 42.86 2.66
4725 4855 2.614983 TGCGTTTTTCGAGGCTAACTTT 59.385 40.909 0.00 0.00 42.86 2.66
4726 4856 2.971261 GCGTTTTTCGAGGCTAACTTTG 59.029 45.455 0.00 0.00 42.86 2.77
4727 4857 3.303526 GCGTTTTTCGAGGCTAACTTTGA 60.304 43.478 0.00 0.00 42.86 2.69
4728 4858 4.209112 CGTTTTTCGAGGCTAACTTTGAC 58.791 43.478 0.00 0.00 42.86 3.18
4729 4859 4.534168 GTTTTTCGAGGCTAACTTTGACC 58.466 43.478 0.00 0.00 0.00 4.02
4730 4860 2.467566 TTCGAGGCTAACTTTGACCC 57.532 50.000 0.00 0.00 0.00 4.46
4731 4861 1.640917 TCGAGGCTAACTTTGACCCT 58.359 50.000 0.00 0.00 0.00 4.34
4732 4862 2.811410 TCGAGGCTAACTTTGACCCTA 58.189 47.619 0.00 0.00 0.00 3.53
4733 4863 3.371965 TCGAGGCTAACTTTGACCCTAT 58.628 45.455 0.00 0.00 0.00 2.57
4734 4864 3.132289 TCGAGGCTAACTTTGACCCTATG 59.868 47.826 0.00 0.00 0.00 2.23
4735 4865 3.118738 CGAGGCTAACTTTGACCCTATGT 60.119 47.826 0.00 0.00 0.00 2.29
4736 4866 4.623171 CGAGGCTAACTTTGACCCTATGTT 60.623 45.833 0.00 0.00 0.00 2.71
4737 4867 5.394883 CGAGGCTAACTTTGACCCTATGTTA 60.395 44.000 0.00 0.00 0.00 2.41
4738 4868 6.382919 AGGCTAACTTTGACCCTATGTTAA 57.617 37.500 0.00 0.00 0.00 2.01
4739 4869 6.786122 AGGCTAACTTTGACCCTATGTTAAA 58.214 36.000 0.00 0.00 32.21 1.52
4748 4878 9.573133 CTTTGACCCTATGTTAAAGCAATAAAG 57.427 33.333 0.00 0.00 41.73 1.85
4808 4938 4.566360 ACATGCAAGTTAAACAAAGCACAC 59.434 37.500 0.00 0.00 34.54 3.82
4818 4948 7.552330 AGTTAAACAAAGCACACCATCAAATTT 59.448 29.630 0.00 0.00 0.00 1.82
4819 4949 5.989551 AACAAAGCACACCATCAAATTTC 57.010 34.783 0.00 0.00 0.00 2.17
4820 4950 5.021033 ACAAAGCACACCATCAAATTTCA 57.979 34.783 0.00 0.00 0.00 2.69
4821 4951 5.613329 ACAAAGCACACCATCAAATTTCAT 58.387 33.333 0.00 0.00 0.00 2.57
4822 4952 6.757237 ACAAAGCACACCATCAAATTTCATA 58.243 32.000 0.00 0.00 0.00 2.15
4823 4953 7.388437 ACAAAGCACACCATCAAATTTCATAT 58.612 30.769 0.00 0.00 0.00 1.78
4824 4954 7.332430 ACAAAGCACACCATCAAATTTCATATG 59.668 33.333 0.00 0.00 0.00 1.78
4825 4955 6.534475 AGCACACCATCAAATTTCATATGT 57.466 33.333 1.90 0.00 0.00 2.29
4826 4956 7.643569 AGCACACCATCAAATTTCATATGTA 57.356 32.000 1.90 0.00 0.00 2.29
4827 4957 7.483307 AGCACACCATCAAATTTCATATGTAC 58.517 34.615 1.90 0.00 0.00 2.90
4829 4959 7.758980 GCACACCATCAAATTTCATATGTACAA 59.241 33.333 0.00 0.00 0.00 2.41
4830 4960 9.292846 CACACCATCAAATTTCATATGTACAAG 57.707 33.333 0.00 0.00 0.00 3.16
4831 4961 9.241919 ACACCATCAAATTTCATATGTACAAGA 57.758 29.630 0.00 0.00 0.00 3.02
4834 4964 9.241317 CCATCAAATTTCATATGTACAAGAAGC 57.759 33.333 0.00 0.00 0.00 3.86
4857 4987 8.517062 AGCTTCTAATGATTAATGATATGGCC 57.483 34.615 0.00 0.00 0.00 5.36
4927 5296 4.021925 GGAGGTGCCTCGCTGGTT 62.022 66.667 11.66 0.00 43.59 3.67
4928 5297 2.032681 GAGGTGCCTCGCTGGTTT 59.967 61.111 2.11 0.00 38.35 3.27
4929 5298 1.600916 GAGGTGCCTCGCTGGTTTT 60.601 57.895 2.11 0.00 38.35 2.43
4930 5299 1.152756 AGGTGCCTCGCTGGTTTTT 60.153 52.632 0.00 0.00 38.35 1.94
4931 5300 0.109723 AGGTGCCTCGCTGGTTTTTA 59.890 50.000 0.00 0.00 38.35 1.52
4932 5301 0.240145 GGTGCCTCGCTGGTTTTTAC 59.760 55.000 0.00 0.00 38.35 2.01
4933 5302 1.235724 GTGCCTCGCTGGTTTTTACT 58.764 50.000 0.00 0.00 38.35 2.24
4934 5303 1.607148 GTGCCTCGCTGGTTTTTACTT 59.393 47.619 0.00 0.00 38.35 2.24
4935 5304 2.034179 GTGCCTCGCTGGTTTTTACTTT 59.966 45.455 0.00 0.00 38.35 2.66
4936 5305 2.691011 TGCCTCGCTGGTTTTTACTTTT 59.309 40.909 0.00 0.00 38.35 2.27
4937 5306 3.131400 TGCCTCGCTGGTTTTTACTTTTT 59.869 39.130 0.00 0.00 38.35 1.94
4962 5331 8.859517 TTTATTCAAAGTCCAAAACGTTTAGG 57.140 30.769 15.03 9.66 0.00 2.69
4963 5332 5.900865 TTCAAAGTCCAAAACGTTTAGGT 57.099 34.783 15.03 0.00 0.00 3.08
4964 5333 5.900865 TCAAAGTCCAAAACGTTTAGGTT 57.099 34.783 15.03 0.00 0.00 3.50
4965 5334 5.642686 TCAAAGTCCAAAACGTTTAGGTTG 58.357 37.500 15.03 8.68 0.00 3.77
4966 5335 4.642445 AAGTCCAAAACGTTTAGGTTGG 57.358 40.909 19.14 19.14 39.27 3.77
4967 5336 2.359848 AGTCCAAAACGTTTAGGTTGGC 59.640 45.455 20.02 15.75 38.37 4.52
4968 5337 1.682323 TCCAAAACGTTTAGGTTGGCC 59.318 47.619 20.02 0.00 38.37 5.36
4969 5338 1.269883 CCAAAACGTTTAGGTTGGCCC 60.270 52.381 15.03 0.00 34.02 5.80
4970 5339 1.409427 CAAAACGTTTAGGTTGGCCCA 59.591 47.619 15.03 0.00 34.66 5.36
4971 5340 1.777941 AAACGTTTAGGTTGGCCCAA 58.222 45.000 12.83 0.00 34.66 4.12
4972 5341 1.034356 AACGTTTAGGTTGGCCCAAC 58.966 50.000 18.56 18.56 42.89 3.77
4982 5351 4.377370 GGCCCAACCAAACATTGC 57.623 55.556 0.00 0.00 38.86 3.56
4983 5352 1.302431 GGCCCAACCAAACATTGCC 60.302 57.895 0.00 0.00 38.86 4.52
4984 5353 1.449353 GCCCAACCAAACATTGCCA 59.551 52.632 0.00 0.00 0.00 4.92
4985 5354 0.884259 GCCCAACCAAACATTGCCAC 60.884 55.000 0.00 0.00 0.00 5.01
4986 5355 0.467384 CCCAACCAAACATTGCCACA 59.533 50.000 0.00 0.00 0.00 4.17
4987 5356 1.134280 CCCAACCAAACATTGCCACAA 60.134 47.619 0.00 0.00 0.00 3.33
4988 5357 2.636830 CCAACCAAACATTGCCACAAA 58.363 42.857 0.00 0.00 0.00 2.83
4989 5358 3.012518 CCAACCAAACATTGCCACAAAA 58.987 40.909 0.00 0.00 0.00 2.44
4990 5359 3.181502 CCAACCAAACATTGCCACAAAAC 60.182 43.478 0.00 0.00 0.00 2.43
4991 5360 3.625649 ACCAAACATTGCCACAAAACT 57.374 38.095 0.00 0.00 0.00 2.66
4992 5361 3.530535 ACCAAACATTGCCACAAAACTC 58.469 40.909 0.00 0.00 0.00 3.01
4993 5362 3.055530 ACCAAACATTGCCACAAAACTCA 60.056 39.130 0.00 0.00 0.00 3.41
4994 5363 3.937706 CCAAACATTGCCACAAAACTCAA 59.062 39.130 0.00 0.00 0.00 3.02
4995 5364 4.034279 CCAAACATTGCCACAAAACTCAAG 59.966 41.667 0.00 0.00 0.00 3.02
4996 5365 4.470334 AACATTGCCACAAAACTCAAGT 57.530 36.364 0.00 0.00 0.00 3.16
4997 5366 4.470334 ACATTGCCACAAAACTCAAGTT 57.530 36.364 0.00 0.00 40.50 2.66
4998 5367 4.432712 ACATTGCCACAAAACTCAAGTTC 58.567 39.130 0.00 0.00 37.25 3.01
4999 5368 4.160252 ACATTGCCACAAAACTCAAGTTCT 59.840 37.500 0.00 0.00 37.25 3.01
5000 5369 5.359576 ACATTGCCACAAAACTCAAGTTCTA 59.640 36.000 0.00 0.00 37.25 2.10
5001 5370 5.906113 TTGCCACAAAACTCAAGTTCTAA 57.094 34.783 0.00 0.00 37.25 2.10
5002 5371 5.906113 TGCCACAAAACTCAAGTTCTAAA 57.094 34.783 0.00 0.00 37.25 1.85
5003 5372 5.890334 TGCCACAAAACTCAAGTTCTAAAG 58.110 37.500 0.00 0.00 37.25 1.85
5004 5373 4.740205 GCCACAAAACTCAAGTTCTAAAGC 59.260 41.667 0.00 0.00 37.25 3.51
5005 5374 4.970003 CCACAAAACTCAAGTTCTAAAGCG 59.030 41.667 0.00 0.00 37.25 4.68
5006 5375 5.448632 CCACAAAACTCAAGTTCTAAAGCGT 60.449 40.000 0.00 0.00 37.25 5.07
5007 5376 5.452302 CACAAAACTCAAGTTCTAAAGCGTG 59.548 40.000 0.00 0.00 37.25 5.34
5008 5377 3.879932 AACTCAAGTTCTAAAGCGTGC 57.120 42.857 0.00 0.00 31.64 5.34
5009 5378 3.113260 ACTCAAGTTCTAAAGCGTGCT 57.887 42.857 0.00 0.00 0.00 4.40
5010 5379 3.467803 ACTCAAGTTCTAAAGCGTGCTT 58.532 40.909 0.24 0.24 37.98 3.91
5011 5380 3.877508 ACTCAAGTTCTAAAGCGTGCTTT 59.122 39.130 21.99 21.99 46.56 3.51
5012 5381 4.209452 TCAAGTTCTAAAGCGTGCTTTG 57.791 40.909 25.69 16.65 44.84 2.77
5013 5382 3.625764 TCAAGTTCTAAAGCGTGCTTTGT 59.374 39.130 25.69 7.02 44.84 2.83
5014 5383 3.609103 AGTTCTAAAGCGTGCTTTGTG 57.391 42.857 25.69 18.52 44.84 3.33
5015 5384 3.202906 AGTTCTAAAGCGTGCTTTGTGA 58.797 40.909 25.69 20.11 44.84 3.58
5016 5385 3.248602 AGTTCTAAAGCGTGCTTTGTGAG 59.751 43.478 25.69 16.78 44.84 3.51
5017 5386 3.106242 TCTAAAGCGTGCTTTGTGAGA 57.894 42.857 25.69 18.51 44.84 3.27
5018 5387 3.664107 TCTAAAGCGTGCTTTGTGAGAT 58.336 40.909 25.69 4.28 44.84 2.75
5019 5388 4.065088 TCTAAAGCGTGCTTTGTGAGATT 58.935 39.130 25.69 3.59 44.84 2.40
5020 5389 2.693797 AAGCGTGCTTTGTGAGATTG 57.306 45.000 0.24 0.00 31.29 2.67
5021 5390 1.597742 AGCGTGCTTTGTGAGATTGT 58.402 45.000 0.00 0.00 0.00 2.71
5022 5391 1.265095 AGCGTGCTTTGTGAGATTGTG 59.735 47.619 0.00 0.00 0.00 3.33
5023 5392 1.264020 GCGTGCTTTGTGAGATTGTGA 59.736 47.619 0.00 0.00 0.00 3.58
5024 5393 2.663879 GCGTGCTTTGTGAGATTGTGAG 60.664 50.000 0.00 0.00 0.00 3.51
5025 5394 2.663879 CGTGCTTTGTGAGATTGTGAGC 60.664 50.000 0.00 0.00 0.00 4.26
5026 5395 1.881973 TGCTTTGTGAGATTGTGAGCC 59.118 47.619 0.00 0.00 0.00 4.70
5027 5396 2.157738 GCTTTGTGAGATTGTGAGCCT 58.842 47.619 0.00 0.00 0.00 4.58
5028 5397 2.555757 GCTTTGTGAGATTGTGAGCCTT 59.444 45.455 0.00 0.00 0.00 4.35
5029 5398 3.611057 GCTTTGTGAGATTGTGAGCCTTG 60.611 47.826 0.00 0.00 0.00 3.61
5030 5399 3.490439 TTGTGAGATTGTGAGCCTTGA 57.510 42.857 0.00 0.00 0.00 3.02
5031 5400 3.490439 TGTGAGATTGTGAGCCTTGAA 57.510 42.857 0.00 0.00 0.00 2.69
5032 5401 3.819368 TGTGAGATTGTGAGCCTTGAAA 58.181 40.909 0.00 0.00 0.00 2.69
5033 5402 3.565482 TGTGAGATTGTGAGCCTTGAAAC 59.435 43.478 0.00 0.00 0.00 2.78
5034 5403 3.817647 GTGAGATTGTGAGCCTTGAAACT 59.182 43.478 0.00 0.00 0.00 2.66
5035 5404 4.067896 TGAGATTGTGAGCCTTGAAACTC 58.932 43.478 0.00 0.00 0.00 3.01
5036 5405 4.067896 GAGATTGTGAGCCTTGAAACTCA 58.932 43.478 0.00 0.00 40.54 3.41
5037 5406 4.464008 AGATTGTGAGCCTTGAAACTCAA 58.536 39.130 0.00 0.00 44.14 3.02
5049 5418 4.468095 TGAAACTCAAGTTCTAAAGCGC 57.532 40.909 0.00 0.00 37.25 5.92
5050 5419 4.127171 TGAAACTCAAGTTCTAAAGCGCT 58.873 39.130 2.64 2.64 37.25 5.92
5051 5420 4.211374 TGAAACTCAAGTTCTAAAGCGCTC 59.789 41.667 12.06 0.00 37.25 5.03
5052 5421 2.689646 ACTCAAGTTCTAAAGCGCTCC 58.310 47.619 12.06 0.00 0.00 4.70
5053 5422 1.656095 CTCAAGTTCTAAAGCGCTCCG 59.344 52.381 12.06 1.67 0.00 4.63
5054 5423 1.271379 TCAAGTTCTAAAGCGCTCCGA 59.729 47.619 12.06 4.55 0.00 4.55
5055 5424 1.656095 CAAGTTCTAAAGCGCTCCGAG 59.344 52.381 12.06 8.73 0.00 4.63
5056 5425 1.174783 AGTTCTAAAGCGCTCCGAGA 58.825 50.000 12.06 11.25 0.00 4.04
5057 5426 1.544691 AGTTCTAAAGCGCTCCGAGAA 59.455 47.619 12.06 16.84 0.00 2.87
5058 5427 2.166664 AGTTCTAAAGCGCTCCGAGAAT 59.833 45.455 23.39 13.97 0.00 2.40
5059 5428 2.930682 GTTCTAAAGCGCTCCGAGAATT 59.069 45.455 23.39 11.48 0.00 2.17
5060 5429 2.810650 TCTAAAGCGCTCCGAGAATTC 58.189 47.619 12.06 0.00 0.00 2.17
5061 5430 2.165641 TCTAAAGCGCTCCGAGAATTCA 59.834 45.455 12.06 0.00 0.00 2.57
5062 5431 1.808411 AAAGCGCTCCGAGAATTCAA 58.192 45.000 12.06 0.00 0.00 2.69
5063 5432 1.363744 AAGCGCTCCGAGAATTCAAG 58.636 50.000 12.06 0.61 0.00 3.02
5064 5433 0.532573 AGCGCTCCGAGAATTCAAGA 59.467 50.000 2.64 0.20 0.00 3.02
5065 5434 1.066858 AGCGCTCCGAGAATTCAAGAA 60.067 47.619 2.64 0.00 0.00 2.52
5066 5435 1.732259 GCGCTCCGAGAATTCAAGAAA 59.268 47.619 8.44 0.00 0.00 2.52
5067 5436 2.352960 GCGCTCCGAGAATTCAAGAAAT 59.647 45.455 8.44 0.00 0.00 2.17
5068 5437 3.786818 GCGCTCCGAGAATTCAAGAAATG 60.787 47.826 8.44 0.00 0.00 2.32
5069 5438 3.618594 CGCTCCGAGAATTCAAGAAATGA 59.381 43.478 8.44 0.00 35.85 2.57
5070 5439 4.493220 CGCTCCGAGAATTCAAGAAATGAC 60.493 45.833 8.44 0.00 37.92 3.06
5071 5440 4.493220 GCTCCGAGAATTCAAGAAATGACG 60.493 45.833 8.44 0.00 37.92 4.35
5072 5441 3.370978 TCCGAGAATTCAAGAAATGACGC 59.629 43.478 8.44 0.00 37.92 5.19
5073 5442 3.337130 CGAGAATTCAAGAAATGACGCG 58.663 45.455 3.53 3.53 37.92 6.01
5074 5443 3.094294 GAGAATTCAAGAAATGACGCGC 58.906 45.455 5.73 0.00 37.92 6.86
5075 5444 2.483877 AGAATTCAAGAAATGACGCGCA 59.516 40.909 5.73 5.73 37.92 6.09
5076 5445 2.247311 ATTCAAGAAATGACGCGCAC 57.753 45.000 5.73 0.41 37.92 5.34
5078 5447 2.139811 CAAGAAATGACGCGCACGC 61.140 57.895 5.73 4.64 45.53 5.34
5079 5448 2.317609 AAGAAATGACGCGCACGCT 61.318 52.632 13.70 0.00 45.53 5.07
5080 5449 2.498761 AAGAAATGACGCGCACGCTG 62.499 55.000 13.70 9.15 45.53 5.18
5081 5450 4.741781 AAATGACGCGCACGCTGC 62.742 61.111 13.70 5.32 45.53 5.25
5085 5454 4.271170 GACGCGCACGCTGCATAG 62.271 66.667 13.70 0.00 45.36 2.23
5088 5457 3.634072 GCGCACGCTGCATAGGAG 61.634 66.667 7.96 0.00 45.36 3.69
5089 5458 2.963854 CGCACGCTGCATAGGAGG 60.964 66.667 0.00 0.00 45.36 4.30
5090 5459 2.501128 GCACGCTGCATAGGAGGA 59.499 61.111 0.00 0.00 44.26 3.71
5091 5460 1.153369 GCACGCTGCATAGGAGGAA 60.153 57.895 0.00 0.00 44.26 3.36
5092 5461 0.744414 GCACGCTGCATAGGAGGAAA 60.744 55.000 0.00 0.00 44.26 3.13
5093 5462 1.293924 CACGCTGCATAGGAGGAAAG 58.706 55.000 0.00 0.00 0.00 2.62
5094 5463 0.462759 ACGCTGCATAGGAGGAAAGC 60.463 55.000 0.00 0.00 0.00 3.51
5095 5464 1.162800 CGCTGCATAGGAGGAAAGCC 61.163 60.000 0.00 0.00 0.00 4.35
5096 5465 0.107017 GCTGCATAGGAGGAAAGCCA 60.107 55.000 0.00 0.00 36.29 4.75
5097 5466 1.683011 GCTGCATAGGAGGAAAGCCAA 60.683 52.381 0.00 0.00 36.29 4.52
5098 5467 2.295885 CTGCATAGGAGGAAAGCCAAG 58.704 52.381 0.00 0.00 36.29 3.61
5099 5468 1.064463 TGCATAGGAGGAAAGCCAAGG 60.064 52.381 0.00 0.00 36.29 3.61
5100 5469 1.752084 GCATAGGAGGAAAGCCAAGGG 60.752 57.143 0.00 0.00 36.29 3.95
5101 5470 1.846439 CATAGGAGGAAAGCCAAGGGA 59.154 52.381 0.00 0.00 36.29 4.20
5102 5471 1.584724 TAGGAGGAAAGCCAAGGGAG 58.415 55.000 0.00 0.00 36.29 4.30
5103 5472 0.476611 AGGAGGAAAGCCAAGGGAGT 60.477 55.000 0.00 0.00 36.29 3.85
5104 5473 0.322906 GGAGGAAAGCCAAGGGAGTG 60.323 60.000 0.00 0.00 36.29 3.51
5105 5474 0.693049 GAGGAAAGCCAAGGGAGTGA 59.307 55.000 0.00 0.00 36.29 3.41
5106 5475 1.283321 GAGGAAAGCCAAGGGAGTGAT 59.717 52.381 0.00 0.00 36.29 3.06
5107 5476 1.005215 AGGAAAGCCAAGGGAGTGATG 59.995 52.381 0.00 0.00 36.29 3.07
5108 5477 1.467920 GAAAGCCAAGGGAGTGATGG 58.532 55.000 0.00 0.00 37.29 3.51
5109 5478 0.779997 AAAGCCAAGGGAGTGATGGT 59.220 50.000 0.00 0.00 36.57 3.55
5110 5479 0.329596 AAGCCAAGGGAGTGATGGTC 59.670 55.000 0.00 0.00 36.57 4.02
5111 5480 0.842030 AGCCAAGGGAGTGATGGTCA 60.842 55.000 0.00 0.00 36.57 4.02
5112 5481 0.038166 GCCAAGGGAGTGATGGTCAA 59.962 55.000 0.00 0.00 36.57 3.18
5113 5482 1.952367 GCCAAGGGAGTGATGGTCAAG 60.952 57.143 0.00 0.00 36.57 3.02
5114 5483 1.457346 CAAGGGAGTGATGGTCAAGC 58.543 55.000 0.00 0.00 0.00 4.01
5115 5484 1.004044 CAAGGGAGTGATGGTCAAGCT 59.996 52.381 0.00 0.00 0.00 3.74
5116 5485 1.366319 AGGGAGTGATGGTCAAGCTT 58.634 50.000 0.00 0.00 0.00 3.74
5117 5486 1.004044 AGGGAGTGATGGTCAAGCTTG 59.996 52.381 20.81 20.81 0.00 4.01
5118 5487 1.003580 GGGAGTGATGGTCAAGCTTGA 59.996 52.381 25.16 25.16 34.20 3.02
5164 5533 1.787012 AAGCTTTTGATTTGCTGGCG 58.213 45.000 0.00 0.00 37.11 5.69
5165 5534 0.675633 AGCTTTTGATTTGCTGGCGT 59.324 45.000 0.00 0.00 35.54 5.68
5166 5535 0.785979 GCTTTTGATTTGCTGGCGTG 59.214 50.000 0.00 0.00 0.00 5.34
5167 5536 1.421382 CTTTTGATTTGCTGGCGTGG 58.579 50.000 0.00 0.00 0.00 4.94
5168 5537 0.599728 TTTTGATTTGCTGGCGTGGC 60.600 50.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.870116 TGATCTGAGTAAATAAAGCTAGCCATA 58.130 33.333 12.13 5.25 0.00 2.74
82 83 4.581309 AATGTCAGATGGTTGGACTGAT 57.419 40.909 0.00 0.00 41.57 2.90
238 243 2.358582 CTGCACAGGACAAACACAATGA 59.641 45.455 0.00 0.00 0.00 2.57
370 376 7.388224 TCAATGCAAATACAATGATTGTGCTTT 59.612 29.630 20.29 15.54 45.03 3.51
495 502 2.951229 GGAAGAGTCCAGACCCAAAA 57.049 50.000 0.00 0.00 44.26 2.44
507 514 2.363680 CACGGAGCATAGATGGAAGAGT 59.636 50.000 0.00 0.00 0.00 3.24
537 544 2.031769 CGACTGAAGCACAAATCAAGCA 60.032 45.455 0.00 0.00 0.00 3.91
538 545 2.578495 CGACTGAAGCACAAATCAAGC 58.422 47.619 0.00 0.00 0.00 4.01
539 546 2.578495 GCGACTGAAGCACAAATCAAG 58.422 47.619 0.00 0.00 34.19 3.02
540 547 1.266718 GGCGACTGAAGCACAAATCAA 59.733 47.619 0.00 0.00 36.08 2.57
541 548 0.874390 GGCGACTGAAGCACAAATCA 59.126 50.000 0.00 0.00 36.08 2.57
542 549 1.160137 AGGCGACTGAAGCACAAATC 58.840 50.000 0.00 0.00 41.13 2.17
543 550 3.329300 AGGCGACTGAAGCACAAAT 57.671 47.368 0.00 0.00 41.13 2.32
544 551 4.876701 AGGCGACTGAAGCACAAA 57.123 50.000 0.00 0.00 41.13 2.83
554 561 0.465460 TTTGGACTTTGCAGGCGACT 60.465 50.000 0.00 0.00 46.44 4.18
555 562 0.383949 TTTTGGACTTTGCAGGCGAC 59.616 50.000 0.00 0.00 0.00 5.19
556 563 1.107114 TTTTTGGACTTTGCAGGCGA 58.893 45.000 0.00 0.00 0.00 5.54
557 564 2.061028 GATTTTTGGACTTTGCAGGCG 58.939 47.619 0.00 0.00 0.00 5.52
558 565 3.062042 CAGATTTTTGGACTTTGCAGGC 58.938 45.455 0.00 0.00 0.00 4.85
559 566 4.202141 TGTCAGATTTTTGGACTTTGCAGG 60.202 41.667 0.00 0.00 32.84 4.85
560 567 4.935702 TGTCAGATTTTTGGACTTTGCAG 58.064 39.130 0.00 0.00 32.84 4.41
561 568 4.998671 TGTCAGATTTTTGGACTTTGCA 57.001 36.364 0.00 0.00 32.84 4.08
562 569 5.531634 TCATGTCAGATTTTTGGACTTTGC 58.468 37.500 0.00 0.00 32.84 3.68
563 570 6.973843 TCTCATGTCAGATTTTTGGACTTTG 58.026 36.000 0.00 0.00 32.84 2.77
564 571 7.771927 ATCTCATGTCAGATTTTTGGACTTT 57.228 32.000 0.00 0.00 27.71 2.66
565 572 7.771927 AATCTCATGTCAGATTTTTGGACTT 57.228 32.000 4.25 0.00 39.67 3.01
566 573 7.771927 AAATCTCATGTCAGATTTTTGGACT 57.228 32.000 13.84 0.00 46.57 3.85
574 581 7.121759 CAGGTGGTAAAAATCTCATGTCAGATT 59.878 37.037 4.25 4.25 43.70 2.40
575 582 6.600822 CAGGTGGTAAAAATCTCATGTCAGAT 59.399 38.462 0.00 0.00 34.34 2.90
576 583 5.939883 CAGGTGGTAAAAATCTCATGTCAGA 59.060 40.000 0.00 0.00 0.00 3.27
577 584 5.707298 ACAGGTGGTAAAAATCTCATGTCAG 59.293 40.000 0.00 0.00 0.00 3.51
578 585 5.630121 ACAGGTGGTAAAAATCTCATGTCA 58.370 37.500 0.00 0.00 0.00 3.58
579 586 6.575162 AACAGGTGGTAAAAATCTCATGTC 57.425 37.500 0.00 0.00 0.00 3.06
580 587 6.976934 AAACAGGTGGTAAAAATCTCATGT 57.023 33.333 0.00 0.00 0.00 3.21
606 613 3.123284 CGGCTCGATTACCGTGTTAAAAA 59.877 43.478 12.15 0.00 44.46 1.94
607 614 2.667481 CGGCTCGATTACCGTGTTAAAA 59.333 45.455 12.15 0.00 44.46 1.52
608 615 2.261345 CGGCTCGATTACCGTGTTAAA 58.739 47.619 12.15 0.00 44.46 1.52
609 616 1.912001 CGGCTCGATTACCGTGTTAA 58.088 50.000 12.15 0.00 44.46 2.01
610 617 3.628005 CGGCTCGATTACCGTGTTA 57.372 52.632 12.15 0.00 44.46 2.41
611 618 4.489249 CGGCTCGATTACCGTGTT 57.511 55.556 12.15 0.00 44.46 3.32
616 623 1.108132 AGGTCTCCGGCTCGATTACC 61.108 60.000 0.00 0.00 0.00 2.85
617 624 1.536331 CTAGGTCTCCGGCTCGATTAC 59.464 57.143 0.00 0.00 0.00 1.89
618 625 1.142465 ACTAGGTCTCCGGCTCGATTA 59.858 52.381 0.00 0.00 0.00 1.75
619 626 0.106619 ACTAGGTCTCCGGCTCGATT 60.107 55.000 0.00 0.00 0.00 3.34
620 627 0.106619 AACTAGGTCTCCGGCTCGAT 60.107 55.000 0.00 0.00 0.00 3.59
621 628 0.323178 AAACTAGGTCTCCGGCTCGA 60.323 55.000 0.00 0.00 0.00 4.04
622 629 0.179134 CAAACTAGGTCTCCGGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
623 630 1.135333 CTCAAACTAGGTCTCCGGCTC 59.865 57.143 0.00 0.00 0.00 4.70
624 631 1.187087 CTCAAACTAGGTCTCCGGCT 58.813 55.000 0.00 0.00 0.00 5.52
625 632 0.896226 ACTCAAACTAGGTCTCCGGC 59.104 55.000 0.00 0.00 0.00 6.13
626 633 2.164624 CTCACTCAAACTAGGTCTCCGG 59.835 54.545 0.00 0.00 0.00 5.14
627 634 2.820787 ACTCACTCAAACTAGGTCTCCG 59.179 50.000 0.00 0.00 0.00 4.63
628 635 4.142337 GCTACTCACTCAAACTAGGTCTCC 60.142 50.000 0.00 0.00 0.00 3.71
629 636 4.703093 AGCTACTCACTCAAACTAGGTCTC 59.297 45.833 0.00 0.00 0.00 3.36
630 637 4.668636 AGCTACTCACTCAAACTAGGTCT 58.331 43.478 0.00 0.00 0.00 3.85
631 638 4.703093 AGAGCTACTCACTCAAACTAGGTC 59.297 45.833 0.00 0.00 36.58 3.85
632 639 4.461081 CAGAGCTACTCACTCAAACTAGGT 59.539 45.833 0.00 0.00 36.58 3.08
633 640 4.142271 CCAGAGCTACTCACTCAAACTAGG 60.142 50.000 0.00 0.00 36.58 3.02
634 641 4.676723 GCCAGAGCTACTCACTCAAACTAG 60.677 50.000 0.00 0.00 36.58 2.57
635 642 3.193691 GCCAGAGCTACTCACTCAAACTA 59.806 47.826 0.00 0.00 36.58 2.24
636 643 2.028567 GCCAGAGCTACTCACTCAAACT 60.029 50.000 0.00 0.00 36.58 2.66
637 644 2.342179 GCCAGAGCTACTCACTCAAAC 58.658 52.381 0.00 0.00 36.58 2.93
638 645 1.067565 CGCCAGAGCTACTCACTCAAA 60.068 52.381 0.00 0.00 36.58 2.69
639 646 0.528017 CGCCAGAGCTACTCACTCAA 59.472 55.000 0.00 0.00 36.58 3.02
640 647 0.322546 TCGCCAGAGCTACTCACTCA 60.323 55.000 0.00 0.00 36.58 3.41
641 648 0.811915 TTCGCCAGAGCTACTCACTC 59.188 55.000 0.00 0.00 36.60 3.51
642 649 1.067495 GTTTCGCCAGAGCTACTCACT 60.067 52.381 0.00 0.00 36.60 3.41
643 650 1.351153 GTTTCGCCAGAGCTACTCAC 58.649 55.000 0.00 0.00 36.60 3.51
644 651 0.109272 CGTTTCGCCAGAGCTACTCA 60.109 55.000 0.00 0.00 36.60 3.41
645 652 0.109226 ACGTTTCGCCAGAGCTACTC 60.109 55.000 0.00 0.00 36.60 2.59
646 653 1.171308 TACGTTTCGCCAGAGCTACT 58.829 50.000 0.00 0.00 36.60 2.57
647 654 1.986698 TTACGTTTCGCCAGAGCTAC 58.013 50.000 0.00 0.00 36.60 3.58
648 655 2.793585 CGATTACGTTTCGCCAGAGCTA 60.794 50.000 7.52 0.00 33.81 3.32
649 656 1.641577 GATTACGTTTCGCCAGAGCT 58.358 50.000 0.00 0.00 36.60 4.09
650 657 0.297820 CGATTACGTTTCGCCAGAGC 59.702 55.000 7.52 0.00 34.56 4.09
651 658 1.846782 CTCGATTACGTTTCGCCAGAG 59.153 52.381 13.80 4.76 40.69 3.35
652 659 1.904144 CTCGATTACGTTTCGCCAGA 58.096 50.000 13.80 0.00 40.69 3.86
653 660 0.297820 GCTCGATTACGTTTCGCCAG 59.702 55.000 13.80 9.31 40.69 4.85
654 661 1.079875 GGCTCGATTACGTTTCGCCA 61.080 55.000 13.80 0.33 38.42 5.69
655 662 0.804933 AGGCTCGATTACGTTTCGCC 60.805 55.000 13.80 10.81 40.69 5.54
656 663 0.297820 CAGGCTCGATTACGTTTCGC 59.702 55.000 13.80 3.51 40.69 4.70
657 664 1.846782 CTCAGGCTCGATTACGTTTCG 59.153 52.381 12.75 12.75 40.69 3.46
658 665 2.853003 GTCTCAGGCTCGATTACGTTTC 59.147 50.000 0.00 0.00 40.69 2.78
688 695 3.277652 GTTCGGTTCCTGAACGTGA 57.722 52.632 4.09 2.42 42.02 4.35
697 704 1.133869 CCAAATCGCGTTCGGTTCC 59.866 57.895 5.77 0.00 38.21 3.62
700 707 0.881159 TGAACCAAATCGCGTTCGGT 60.881 50.000 5.77 5.68 41.04 4.69
701 708 0.236187 TTGAACCAAATCGCGTTCGG 59.764 50.000 5.77 4.98 41.04 4.30
702 709 2.025544 TTTGAACCAAATCGCGTTCG 57.974 45.000 5.77 0.00 41.04 3.95
732 739 2.443387 GGTCGCGTTCGTTTTCTTTTT 58.557 42.857 5.77 0.00 36.96 1.94
733 740 1.592830 CGGTCGCGTTCGTTTTCTTTT 60.593 47.619 5.77 0.00 36.96 2.27
734 741 0.042794 CGGTCGCGTTCGTTTTCTTT 60.043 50.000 5.77 0.00 36.96 2.52
735 742 1.561250 CGGTCGCGTTCGTTTTCTT 59.439 52.632 5.77 0.00 36.96 2.52
736 743 2.305127 CCGGTCGCGTTCGTTTTCT 61.305 57.895 18.46 0.00 36.96 2.52
768 775 0.681243 GAAGGCGCCCTTTTGGATCT 60.681 55.000 26.15 0.00 44.82 2.75
770 777 1.682344 GGAAGGCGCCCTTTTGGAT 60.682 57.895 26.15 0.00 44.82 3.41
798 806 0.317519 GGGTTTCCGTGCTTTTCGTG 60.318 55.000 0.00 0.00 0.00 4.35
943 952 3.837213 ATAGGCGGGAGAGAGGGCC 62.837 68.421 0.00 0.00 45.91 5.80
944 953 1.822114 GAATAGGCGGGAGAGAGGGC 61.822 65.000 0.00 0.00 0.00 5.19
945 954 1.188871 GGAATAGGCGGGAGAGAGGG 61.189 65.000 0.00 0.00 0.00 4.30
1164 1187 1.007849 GCGCTTCTCGAGGATCTCC 60.008 63.158 13.56 0.00 41.67 3.71
1292 1315 6.604012 CGTATCGGATATAGGTGCAGATATC 58.396 44.000 12.01 12.01 35.25 1.63
1317 1340 1.340893 TGAGCAACACATACATGGGGG 60.341 52.381 0.00 0.00 34.87 5.40
1319 1342 2.019249 CCTGAGCAACACATACATGGG 58.981 52.381 0.00 0.00 37.19 4.00
1336 1359 0.179086 GGGCACAAACCAACAACCTG 60.179 55.000 0.00 0.00 0.00 4.00
1372 1395 4.223255 GCCTCTAGAACACCTCCTAACTTT 59.777 45.833 0.00 0.00 0.00 2.66
1408 1431 4.519906 ACCTAACAAATCCACCCATAGG 57.480 45.455 0.00 0.00 40.04 2.57
1415 1438 7.029563 CAGAAGCATAAACCTAACAAATCCAC 58.970 38.462 0.00 0.00 0.00 4.02
1418 1441 7.029563 CCACAGAAGCATAAACCTAACAAATC 58.970 38.462 0.00 0.00 0.00 2.17
1438 1461 2.292267 CCTAGTTATGCAAGCCCACAG 58.708 52.381 0.00 0.00 0.00 3.66
1480 1503 4.082787 ACAAATCAACCAATAGGAACAGCG 60.083 41.667 0.00 0.00 38.69 5.18
1486 1509 8.187913 TCATCAAAACAAATCAACCAATAGGA 57.812 30.769 0.00 0.00 38.69 2.94
1505 1528 6.264970 TCCACACAGAACAAATCAATCATCAA 59.735 34.615 0.00 0.00 0.00 2.57
1966 1989 1.909700 ACAGAACATCCGTTGCCAAT 58.090 45.000 0.00 0.00 34.75 3.16
2397 2420 1.149101 TTTCCTTCCAGCAGGACCTT 58.851 50.000 0.00 0.00 45.73 3.50
2578 2601 1.300620 TGTTCTTCCAGCACGACCG 60.301 57.895 0.00 0.00 0.00 4.79
2629 2652 8.088365 GGCTGTAAATCACCATTAAAACTCTTT 58.912 33.333 0.00 0.00 0.00 2.52
2656 2679 2.973945 AGAATTTCTGGGTACGTCTGC 58.026 47.619 0.00 0.00 0.00 4.26
2662 2685 3.934068 TGACCGAAGAATTTCTGGGTAC 58.066 45.455 17.69 13.17 35.19 3.34
2728 2751 5.342806 TGAAGTCAAAATGCACTAAGTCG 57.657 39.130 0.00 0.00 0.00 4.18
2731 2754 6.258230 TCCATGAAGTCAAAATGCACTAAG 57.742 37.500 0.00 0.00 0.00 2.18
2803 2826 2.589157 ATCGTCGAGTGCCCCCAAA 61.589 57.895 0.00 0.00 0.00 3.28
2991 3015 7.312657 ACAACATGATAATGTAGTTGCAGAG 57.687 36.000 0.00 0.00 42.32 3.35
3119 3143 5.767665 ACAGTTGCTGGTGACAATATACAAA 59.232 36.000 1.08 0.00 42.06 2.83
3124 3148 3.753272 GTGACAGTTGCTGGTGACAATAT 59.247 43.478 1.08 0.00 42.06 1.28
3133 3157 2.633657 GTGCGTGACAGTTGCTGG 59.366 61.111 1.08 0.00 35.51 4.85
3146 3170 2.103042 GCTCTACAAGCCAGGTGCG 61.103 63.158 0.00 0.00 45.92 5.34
3450 3476 8.210946 CCAGGTGTAGATTTAATGAGAATGGTA 58.789 37.037 0.00 0.00 0.00 3.25
3463 3489 2.026822 CAGTCAGGCCAGGTGTAGATTT 60.027 50.000 5.01 0.00 0.00 2.17
3464 3490 1.556911 CAGTCAGGCCAGGTGTAGATT 59.443 52.381 5.01 0.00 0.00 2.40
3474 3500 2.496871 CCAATAAATTGCAGTCAGGCCA 59.503 45.455 5.01 0.00 36.48 5.36
3477 3503 2.431782 CCCCCAATAAATTGCAGTCAGG 59.568 50.000 0.00 0.00 36.48 3.86
3479 3505 1.830477 GCCCCCAATAAATTGCAGTCA 59.170 47.619 0.00 0.00 36.48 3.41
3491 3517 1.972588 AGAGTCTGTTAGCCCCCAAT 58.027 50.000 0.00 0.00 0.00 3.16
3662 3688 5.500645 TCCTGATGTTGACATAGTACTCG 57.499 43.478 0.00 0.00 36.57 4.18
4004 4038 7.765695 AGGTCAACATTGTCAATCAAATACT 57.234 32.000 0.00 0.00 39.62 2.12
4235 4273 0.409092 ATGACAATGGTGGAGGCCAA 59.591 50.000 5.01 0.00 42.48 4.52
4236 4274 0.323633 CATGACAATGGTGGAGGCCA 60.324 55.000 5.01 0.00 43.48 5.36
4237 4275 0.034186 TCATGACAATGGTGGAGGCC 60.034 55.000 0.00 0.00 34.30 5.19
4344 4382 6.248433 AGAGGGAAAACAAGCATCTAATTCA 58.752 36.000 0.00 0.00 0.00 2.57
4408 4455 9.787532 CGTTTGATACACCAAAAATATGAAGAT 57.212 29.630 0.00 0.00 37.72 2.40
4412 4459 7.026562 CAGCGTTTGATACACCAAAAATATGA 58.973 34.615 0.00 0.00 37.72 2.15
4547 4594 4.106341 ACAAATAATTCGGGATGGAGGGAT 59.894 41.667 0.00 0.00 0.00 3.85
4555 4602 8.980481 AGACAAATCTACAAATAATTCGGGAT 57.020 30.769 0.00 0.00 31.46 3.85
4586 4685 3.521531 TGTAGTGGCATTTCCTGTATCCA 59.478 43.478 0.00 0.00 35.26 3.41
4601 4700 3.638627 TGTATCCTGAGAGCATGTAGTGG 59.361 47.826 0.00 0.00 0.00 4.00
4623 4722 2.863809 CAGGAAAGGTAAACAGTGGCT 58.136 47.619 0.00 0.00 0.00 4.75
4636 4735 0.034896 ACACGTACAGGGCAGGAAAG 59.965 55.000 0.00 0.00 0.00 2.62
4687 4817 2.438021 ACGCATTGGACCCTATACACAT 59.562 45.455 0.00 0.00 0.00 3.21
4699 4829 0.239879 GCCTCGAAAAACGCATTGGA 59.760 50.000 0.00 0.00 42.26 3.53
4701 4831 2.892373 TAGCCTCGAAAAACGCATTG 57.108 45.000 0.00 0.00 42.26 2.82
4717 4847 6.150474 TGCTTTAACATAGGGTCAAAGTTAGC 59.850 38.462 0.00 0.00 0.00 3.09
4718 4848 7.681939 TGCTTTAACATAGGGTCAAAGTTAG 57.318 36.000 0.00 0.00 0.00 2.34
4719 4849 8.644374 ATTGCTTTAACATAGGGTCAAAGTTA 57.356 30.769 0.00 0.00 0.00 2.24
4720 4850 6.969993 TTGCTTTAACATAGGGTCAAAGTT 57.030 33.333 0.00 0.00 0.00 2.66
4721 4851 8.644374 TTATTGCTTTAACATAGGGTCAAAGT 57.356 30.769 0.00 0.00 0.00 2.66
4722 4852 9.573133 CTTTATTGCTTTAACATAGGGTCAAAG 57.427 33.333 0.00 0.00 0.00 2.77
4723 4853 8.527810 CCTTTATTGCTTTAACATAGGGTCAAA 58.472 33.333 0.00 0.00 0.00 2.69
4724 4854 7.672239 ACCTTTATTGCTTTAACATAGGGTCAA 59.328 33.333 0.00 0.00 0.00 3.18
4725 4855 7.179269 ACCTTTATTGCTTTAACATAGGGTCA 58.821 34.615 0.00 0.00 0.00 4.02
4726 4856 7.640597 ACCTTTATTGCTTTAACATAGGGTC 57.359 36.000 0.00 0.00 0.00 4.46
4727 4857 9.536510 TTAACCTTTATTGCTTTAACATAGGGT 57.463 29.630 0.00 0.00 0.00 4.34
4728 4858 9.797556 GTTAACCTTTATTGCTTTAACATAGGG 57.202 33.333 0.00 0.00 34.29 3.53
4735 4865 9.752961 GGTCAAAGTTAACCTTTATTGCTTTAA 57.247 29.630 0.88 0.00 41.51 1.52
4736 4866 8.361889 GGGTCAAAGTTAACCTTTATTGCTTTA 58.638 33.333 0.88 0.00 41.51 1.85
4737 4867 7.070696 AGGGTCAAAGTTAACCTTTATTGCTTT 59.929 33.333 0.88 0.00 41.51 3.51
4738 4868 6.553476 AGGGTCAAAGTTAACCTTTATTGCTT 59.447 34.615 0.88 0.00 41.51 3.91
4739 4869 6.075315 AGGGTCAAAGTTAACCTTTATTGCT 58.925 36.000 0.88 0.00 41.51 3.91
4740 4870 6.340962 AGGGTCAAAGTTAACCTTTATTGC 57.659 37.500 0.88 0.00 41.51 3.56
4741 4871 9.020731 ACATAGGGTCAAAGTTAACCTTTATTG 57.979 33.333 0.88 1.27 41.51 1.90
4742 4872 9.596308 AACATAGGGTCAAAGTTAACCTTTATT 57.404 29.630 0.88 0.00 41.51 1.40
4745 4875 8.999905 TTAACATAGGGTCAAAGTTAACCTTT 57.000 30.769 0.88 0.00 44.30 3.11
4746 4876 8.999905 TTTAACATAGGGTCAAAGTTAACCTT 57.000 30.769 0.88 0.00 35.22 3.50
4747 4877 8.222637 ACTTTAACATAGGGTCAAAGTTAACCT 58.777 33.333 0.88 0.00 36.33 3.50
4748 4878 8.400184 ACTTTAACATAGGGTCAAAGTTAACC 57.600 34.615 0.88 0.00 36.33 2.85
4808 4938 9.241317 GCTTCTTGTACATATGAAATTTGATGG 57.759 33.333 10.38 0.00 0.00 3.51
4831 4961 8.964772 GGCCATATCATTAATCATTAGAAGCTT 58.035 33.333 0.00 0.00 0.00 3.74
4832 4962 8.334734 AGGCCATATCATTAATCATTAGAAGCT 58.665 33.333 5.01 0.00 0.00 3.74
4833 4963 8.517062 AGGCCATATCATTAATCATTAGAAGC 57.483 34.615 5.01 0.00 0.00 3.86
4834 4964 9.902684 AGAGGCCATATCATTAATCATTAGAAG 57.097 33.333 5.01 0.00 0.00 2.85
4836 4966 9.896645 GAAGAGGCCATATCATTAATCATTAGA 57.103 33.333 5.01 0.00 0.00 2.10
4837 4967 9.902684 AGAAGAGGCCATATCATTAATCATTAG 57.097 33.333 5.01 0.00 0.00 1.73
4838 4968 9.896645 GAGAAGAGGCCATATCATTAATCATTA 57.103 33.333 5.01 0.00 0.00 1.90
4840 4970 7.344913 GGAGAAGAGGCCATATCATTAATCAT 58.655 38.462 5.01 0.00 0.00 2.45
4841 4971 6.296662 GGGAGAAGAGGCCATATCATTAATCA 60.297 42.308 5.01 0.00 0.00 2.57
4842 4972 6.118852 GGGAGAAGAGGCCATATCATTAATC 58.881 44.000 5.01 0.00 0.00 1.75
4843 4973 5.044550 GGGGAGAAGAGGCCATATCATTAAT 60.045 44.000 5.01 0.00 0.00 1.40
4844 4974 4.289672 GGGGAGAAGAGGCCATATCATTAA 59.710 45.833 5.01 0.00 0.00 1.40
4846 4976 2.646798 GGGGAGAAGAGGCCATATCATT 59.353 50.000 5.01 0.00 0.00 2.57
4847 4977 2.157880 AGGGGAGAAGAGGCCATATCAT 60.158 50.000 5.01 0.00 0.00 2.45
4849 4979 1.627834 CAGGGGAGAAGAGGCCATATC 59.372 57.143 5.01 0.00 0.00 1.63
4851 4981 0.400525 CCAGGGGAGAAGAGGCCATA 60.401 60.000 5.01 0.00 0.00 2.74
4854 4984 2.285743 ACCAGGGGAGAAGAGGCC 60.286 66.667 0.00 0.00 0.00 5.19
4855 4985 2.993853 CACCAGGGGAGAAGAGGC 59.006 66.667 0.00 0.00 0.00 4.70
4856 4986 1.614824 AGCACCAGGGGAGAAGAGG 60.615 63.158 0.00 0.00 0.00 3.69
4857 4987 1.621672 GGAGCACCAGGGGAGAAGAG 61.622 65.000 0.00 0.00 35.97 2.85
4936 5305 9.303537 CCTAAACGTTTTGGACTTTGAATAAAA 57.696 29.630 30.08 2.25 35.47 1.52
4937 5306 8.468399 ACCTAAACGTTTTGGACTTTGAATAAA 58.532 29.630 36.91 8.37 36.70 1.40
4938 5307 7.998580 ACCTAAACGTTTTGGACTTTGAATAA 58.001 30.769 36.91 8.97 36.70 1.40
4939 5308 7.571080 ACCTAAACGTTTTGGACTTTGAATA 57.429 32.000 36.91 9.37 36.70 1.75
4940 5309 6.459670 ACCTAAACGTTTTGGACTTTGAAT 57.540 33.333 36.91 16.86 36.70 2.57
4941 5310 5.900865 ACCTAAACGTTTTGGACTTTGAA 57.099 34.783 36.91 10.03 36.70 2.69
4942 5311 5.393243 CCAACCTAAACGTTTTGGACTTTGA 60.393 40.000 36.91 10.70 40.97 2.69
4943 5312 4.801516 CCAACCTAAACGTTTTGGACTTTG 59.198 41.667 36.91 29.59 40.97 2.77
4944 5313 4.678574 GCCAACCTAAACGTTTTGGACTTT 60.679 41.667 36.91 23.06 40.97 2.66
4945 5314 3.181484 GCCAACCTAAACGTTTTGGACTT 60.181 43.478 36.91 23.65 40.97 3.01
4946 5315 2.359848 GCCAACCTAAACGTTTTGGACT 59.640 45.455 36.91 24.24 40.97 3.85
4947 5316 2.544277 GGCCAACCTAAACGTTTTGGAC 60.544 50.000 36.91 27.74 40.97 4.02
4948 5317 1.682323 GGCCAACCTAAACGTTTTGGA 59.318 47.619 36.91 14.09 40.97 3.53
4949 5318 1.269883 GGGCCAACCTAAACGTTTTGG 60.270 52.381 31.32 31.32 41.35 3.28
4950 5319 1.409427 TGGGCCAACCTAAACGTTTTG 59.591 47.619 20.19 16.97 41.11 2.44
4951 5320 1.777941 TGGGCCAACCTAAACGTTTT 58.222 45.000 20.19 0.00 41.11 2.43
4952 5321 1.409790 GTTGGGCCAACCTAAACGTTT 59.590 47.619 34.31 18.90 38.29 3.60
4953 5322 1.034356 GTTGGGCCAACCTAAACGTT 58.966 50.000 34.31 0.00 38.29 3.99
4954 5323 2.723231 GTTGGGCCAACCTAAACGT 58.277 52.632 34.31 0.00 38.29 3.99
4965 5334 1.302431 GGCAATGTTTGGTTGGGCC 60.302 57.895 0.00 0.00 37.90 5.80
4966 5335 0.884259 GTGGCAATGTTTGGTTGGGC 60.884 55.000 0.00 0.00 0.00 5.36
4967 5336 0.467384 TGTGGCAATGTTTGGTTGGG 59.533 50.000 0.00 0.00 0.00 4.12
4968 5337 2.322355 TTGTGGCAATGTTTGGTTGG 57.678 45.000 0.00 0.00 0.00 3.77
4969 5338 3.688673 AGTTTTGTGGCAATGTTTGGTTG 59.311 39.130 0.00 0.00 0.00 3.77
4970 5339 3.938334 GAGTTTTGTGGCAATGTTTGGTT 59.062 39.130 0.00 0.00 0.00 3.67
4971 5340 3.055530 TGAGTTTTGTGGCAATGTTTGGT 60.056 39.130 0.00 0.00 0.00 3.67
4972 5341 3.529533 TGAGTTTTGTGGCAATGTTTGG 58.470 40.909 0.00 0.00 0.00 3.28
4973 5342 4.630940 ACTTGAGTTTTGTGGCAATGTTTG 59.369 37.500 0.00 0.00 0.00 2.93
4974 5343 4.831107 ACTTGAGTTTTGTGGCAATGTTT 58.169 34.783 0.00 0.00 0.00 2.83
4975 5344 4.470334 ACTTGAGTTTTGTGGCAATGTT 57.530 36.364 0.00 0.00 0.00 2.71
4976 5345 4.160252 AGAACTTGAGTTTTGTGGCAATGT 59.840 37.500 0.00 0.00 38.56 2.71
4977 5346 4.685924 AGAACTTGAGTTTTGTGGCAATG 58.314 39.130 0.00 0.00 38.56 2.82
4978 5347 6.463995 TTAGAACTTGAGTTTTGTGGCAAT 57.536 33.333 0.00 0.00 38.56 3.56
4979 5348 5.906113 TTAGAACTTGAGTTTTGTGGCAA 57.094 34.783 0.00 0.00 38.56 4.52
4980 5349 5.678616 GCTTTAGAACTTGAGTTTTGTGGCA 60.679 40.000 0.00 0.00 38.56 4.92
4981 5350 4.740205 GCTTTAGAACTTGAGTTTTGTGGC 59.260 41.667 0.00 0.00 38.56 5.01
4982 5351 4.970003 CGCTTTAGAACTTGAGTTTTGTGG 59.030 41.667 0.00 0.00 38.56 4.17
4983 5352 5.452302 CACGCTTTAGAACTTGAGTTTTGTG 59.548 40.000 0.00 0.00 38.56 3.33
4984 5353 5.569413 CACGCTTTAGAACTTGAGTTTTGT 58.431 37.500 0.00 0.00 38.56 2.83
4985 5354 4.437820 GCACGCTTTAGAACTTGAGTTTTG 59.562 41.667 0.00 0.00 38.56 2.44
4986 5355 4.335594 AGCACGCTTTAGAACTTGAGTTTT 59.664 37.500 0.00 0.00 38.56 2.43
4987 5356 3.877508 AGCACGCTTTAGAACTTGAGTTT 59.122 39.130 0.00 0.00 38.56 2.66
4988 5357 3.467803 AGCACGCTTTAGAACTTGAGTT 58.532 40.909 0.00 0.00 41.64 3.01
4989 5358 3.113260 AGCACGCTTTAGAACTTGAGT 57.887 42.857 0.00 0.00 0.00 3.41
4990 5359 4.214437 CAAAGCACGCTTTAGAACTTGAG 58.786 43.478 16.18 0.00 43.56 3.02
4991 5360 3.625764 ACAAAGCACGCTTTAGAACTTGA 59.374 39.130 16.18 0.00 43.56 3.02
4992 5361 3.725740 CACAAAGCACGCTTTAGAACTTG 59.274 43.478 16.18 6.30 43.56 3.16
4993 5362 3.625764 TCACAAAGCACGCTTTAGAACTT 59.374 39.130 16.18 0.00 43.56 2.66
4994 5363 3.202906 TCACAAAGCACGCTTTAGAACT 58.797 40.909 16.18 0.00 43.56 3.01
4995 5364 3.247648 TCTCACAAAGCACGCTTTAGAAC 59.752 43.478 16.18 0.00 43.56 3.01
4996 5365 3.462982 TCTCACAAAGCACGCTTTAGAA 58.537 40.909 16.18 4.61 43.56 2.10
4997 5366 3.106242 TCTCACAAAGCACGCTTTAGA 57.894 42.857 16.18 12.78 43.56 2.10
4998 5367 4.153986 CAATCTCACAAAGCACGCTTTAG 58.846 43.478 16.18 10.80 43.56 1.85
4999 5368 3.563808 ACAATCTCACAAAGCACGCTTTA 59.436 39.130 16.18 1.78 43.56 1.85
5000 5369 2.358898 ACAATCTCACAAAGCACGCTTT 59.641 40.909 11.17 11.17 45.98 3.51
5001 5370 1.949525 ACAATCTCACAAAGCACGCTT 59.050 42.857 0.00 0.00 37.98 4.68
5002 5371 1.265095 CACAATCTCACAAAGCACGCT 59.735 47.619 0.00 0.00 0.00 5.07
5003 5372 1.264020 TCACAATCTCACAAAGCACGC 59.736 47.619 0.00 0.00 0.00 5.34
5004 5373 2.663879 GCTCACAATCTCACAAAGCACG 60.664 50.000 0.00 0.00 0.00 5.34
5005 5374 2.351157 GGCTCACAATCTCACAAAGCAC 60.351 50.000 0.00 0.00 0.00 4.40
5006 5375 1.881973 GGCTCACAATCTCACAAAGCA 59.118 47.619 0.00 0.00 0.00 3.91
5007 5376 2.157738 AGGCTCACAATCTCACAAAGC 58.842 47.619 0.00 0.00 0.00 3.51
5008 5377 3.817084 TCAAGGCTCACAATCTCACAAAG 59.183 43.478 0.00 0.00 0.00 2.77
5009 5378 3.819368 TCAAGGCTCACAATCTCACAAA 58.181 40.909 0.00 0.00 0.00 2.83
5010 5379 3.490439 TCAAGGCTCACAATCTCACAA 57.510 42.857 0.00 0.00 0.00 3.33
5011 5380 3.490439 TTCAAGGCTCACAATCTCACA 57.510 42.857 0.00 0.00 0.00 3.58
5012 5381 3.817647 AGTTTCAAGGCTCACAATCTCAC 59.182 43.478 0.00 0.00 0.00 3.51
5013 5382 4.067896 GAGTTTCAAGGCTCACAATCTCA 58.932 43.478 0.00 0.00 0.00 3.27
5014 5383 4.067896 TGAGTTTCAAGGCTCACAATCTC 58.932 43.478 0.00 0.00 36.89 2.75
5015 5384 4.090761 TGAGTTTCAAGGCTCACAATCT 57.909 40.909 0.00 0.00 36.89 2.40
5016 5385 4.836125 TTGAGTTTCAAGGCTCACAATC 57.164 40.909 0.00 0.00 40.91 2.67
5027 5396 4.574828 AGCGCTTTAGAACTTGAGTTTCAA 59.425 37.500 2.64 0.00 38.56 2.69
5028 5397 4.127171 AGCGCTTTAGAACTTGAGTTTCA 58.873 39.130 2.64 0.00 38.56 2.69
5029 5398 4.377533 GGAGCGCTTTAGAACTTGAGTTTC 60.378 45.833 13.26 0.00 38.56 2.78
5030 5399 3.498777 GGAGCGCTTTAGAACTTGAGTTT 59.501 43.478 13.26 0.00 38.56 2.66
5031 5400 3.067833 GGAGCGCTTTAGAACTTGAGTT 58.932 45.455 13.26 0.00 41.64 3.01
5032 5401 2.689646 GGAGCGCTTTAGAACTTGAGT 58.310 47.619 13.26 0.00 0.00 3.41
5033 5402 1.656095 CGGAGCGCTTTAGAACTTGAG 59.344 52.381 13.26 0.00 0.00 3.02
5034 5403 1.271379 TCGGAGCGCTTTAGAACTTGA 59.729 47.619 13.26 0.00 0.00 3.02
5035 5404 1.656095 CTCGGAGCGCTTTAGAACTTG 59.344 52.381 13.26 0.00 0.00 3.16
5036 5405 1.544691 TCTCGGAGCGCTTTAGAACTT 59.455 47.619 13.26 0.00 0.00 2.66
5037 5406 1.174783 TCTCGGAGCGCTTTAGAACT 58.825 50.000 13.26 0.00 0.00 3.01
5038 5407 1.992170 TTCTCGGAGCGCTTTAGAAC 58.008 50.000 13.26 0.00 0.00 3.01
5039 5408 2.961526 ATTCTCGGAGCGCTTTAGAA 57.038 45.000 23.55 23.55 0.00 2.10
5040 5409 2.165641 TGAATTCTCGGAGCGCTTTAGA 59.834 45.455 13.26 12.33 0.00 2.10
5041 5410 2.540515 TGAATTCTCGGAGCGCTTTAG 58.459 47.619 13.26 9.91 0.00 1.85
5042 5411 2.665649 TGAATTCTCGGAGCGCTTTA 57.334 45.000 13.26 0.00 0.00 1.85
5043 5412 1.734465 CTTGAATTCTCGGAGCGCTTT 59.266 47.619 13.26 0.00 0.00 3.51
5044 5413 1.066858 TCTTGAATTCTCGGAGCGCTT 60.067 47.619 13.26 0.00 0.00 4.68
5045 5414 0.532573 TCTTGAATTCTCGGAGCGCT 59.467 50.000 11.27 11.27 0.00 5.92
5046 5415 1.359848 TTCTTGAATTCTCGGAGCGC 58.640 50.000 7.05 0.00 0.00 5.92
5047 5416 3.618594 TCATTTCTTGAATTCTCGGAGCG 59.381 43.478 7.05 0.00 0.00 5.03
5048 5417 4.493220 CGTCATTTCTTGAATTCTCGGAGC 60.493 45.833 7.05 0.00 35.70 4.70
5049 5418 4.493220 GCGTCATTTCTTGAATTCTCGGAG 60.493 45.833 7.05 0.00 35.70 4.63
5050 5419 3.370978 GCGTCATTTCTTGAATTCTCGGA 59.629 43.478 7.05 0.00 35.70 4.55
5051 5420 3.674423 GCGTCATTTCTTGAATTCTCGG 58.326 45.455 7.05 0.00 35.70 4.63
5052 5421 3.337130 CGCGTCATTTCTTGAATTCTCG 58.663 45.455 7.05 0.00 35.70 4.04
5053 5422 3.094294 GCGCGTCATTTCTTGAATTCTC 58.906 45.455 8.43 0.00 35.70 2.87
5054 5423 2.483877 TGCGCGTCATTTCTTGAATTCT 59.516 40.909 8.43 0.00 35.70 2.40
5055 5424 2.589841 GTGCGCGTCATTTCTTGAATTC 59.410 45.455 8.43 0.00 35.70 2.17
5056 5425 2.584791 GTGCGCGTCATTTCTTGAATT 58.415 42.857 8.43 0.00 35.70 2.17
5057 5426 1.464023 CGTGCGCGTCATTTCTTGAAT 60.464 47.619 12.43 0.00 35.70 2.57
5058 5427 0.110867 CGTGCGCGTCATTTCTTGAA 60.111 50.000 12.43 0.00 35.70 2.69
5059 5428 1.491127 CGTGCGCGTCATTTCTTGA 59.509 52.632 12.43 0.00 0.00 3.02
5060 5429 2.139811 GCGTGCGCGTCATTTCTTG 61.140 57.895 22.18 0.00 40.81 3.02
5061 5430 2.173382 GCGTGCGCGTCATTTCTT 59.827 55.556 22.18 0.00 40.81 2.52
5073 5442 0.744414 TTTCCTCCTATGCAGCGTGC 60.744 55.000 0.00 3.44 45.29 5.34
5074 5443 1.293924 CTTTCCTCCTATGCAGCGTG 58.706 55.000 0.00 0.00 0.00 5.34
5075 5444 0.462759 GCTTTCCTCCTATGCAGCGT 60.463 55.000 0.00 0.00 0.00 5.07
5076 5445 1.162800 GGCTTTCCTCCTATGCAGCG 61.163 60.000 0.00 0.00 0.00 5.18
5077 5446 0.107017 TGGCTTTCCTCCTATGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
5078 5447 2.295885 CTTGGCTTTCCTCCTATGCAG 58.704 52.381 0.00 0.00 0.00 4.41
5079 5448 1.064463 CCTTGGCTTTCCTCCTATGCA 60.064 52.381 0.00 0.00 0.00 3.96
5080 5449 1.685148 CCTTGGCTTTCCTCCTATGC 58.315 55.000 0.00 0.00 0.00 3.14
5081 5450 1.846439 TCCCTTGGCTTTCCTCCTATG 59.154 52.381 0.00 0.00 0.00 2.23
5082 5451 2.131023 CTCCCTTGGCTTTCCTCCTAT 58.869 52.381 0.00 0.00 0.00 2.57
5083 5452 1.203440 ACTCCCTTGGCTTTCCTCCTA 60.203 52.381 0.00 0.00 0.00 2.94
5084 5453 0.476611 ACTCCCTTGGCTTTCCTCCT 60.477 55.000 0.00 0.00 0.00 3.69
5085 5454 0.322906 CACTCCCTTGGCTTTCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
5086 5455 0.693049 TCACTCCCTTGGCTTTCCTC 59.307 55.000 0.00 0.00 0.00 3.71
5087 5456 1.005215 CATCACTCCCTTGGCTTTCCT 59.995 52.381 0.00 0.00 0.00 3.36
5088 5457 1.467920 CATCACTCCCTTGGCTTTCC 58.532 55.000 0.00 0.00 0.00 3.13
5089 5458 1.272147 ACCATCACTCCCTTGGCTTTC 60.272 52.381 0.00 0.00 33.66 2.62
5090 5459 0.779997 ACCATCACTCCCTTGGCTTT 59.220 50.000 0.00 0.00 33.66 3.51
5091 5460 0.329596 GACCATCACTCCCTTGGCTT 59.670 55.000 0.00 0.00 33.66 4.35
5092 5461 0.842030 TGACCATCACTCCCTTGGCT 60.842 55.000 0.00 0.00 33.66 4.75
5093 5462 0.038166 TTGACCATCACTCCCTTGGC 59.962 55.000 0.00 0.00 33.66 4.52
5094 5463 1.952367 GCTTGACCATCACTCCCTTGG 60.952 57.143 0.00 0.00 36.56 3.61
5095 5464 1.004044 AGCTTGACCATCACTCCCTTG 59.996 52.381 0.00 0.00 0.00 3.61
5096 5465 1.366319 AGCTTGACCATCACTCCCTT 58.634 50.000 0.00 0.00 0.00 3.95
5097 5466 1.004044 CAAGCTTGACCATCACTCCCT 59.996 52.381 22.31 0.00 0.00 4.20
5098 5467 1.003580 TCAAGCTTGACCATCACTCCC 59.996 52.381 25.16 0.00 31.01 4.30
5099 5468 2.479566 TCAAGCTTGACCATCACTCC 57.520 50.000 25.16 0.00 31.01 3.85
5131 5500 6.826893 TCAAAAGCTTTTGTTATGTCAAGC 57.173 33.333 37.79 0.00 45.77 4.01
5132 5501 9.640974 CAAATCAAAAGCTTTTGTTATGTCAAG 57.359 29.630 37.79 21.16 45.77 3.02
5133 5502 8.121708 GCAAATCAAAAGCTTTTGTTATGTCAA 58.878 29.630 37.79 23.57 45.77 3.18
5134 5503 7.495279 AGCAAATCAAAAGCTTTTGTTATGTCA 59.505 29.630 37.79 24.17 45.77 3.58
5135 5504 7.795272 CAGCAAATCAAAAGCTTTTGTTATGTC 59.205 33.333 37.79 27.99 45.77 3.06
5136 5505 7.254863 CCAGCAAATCAAAAGCTTTTGTTATGT 60.255 33.333 37.79 24.10 45.77 2.29
5137 5506 7.073265 CCAGCAAATCAAAAGCTTTTGTTATG 58.927 34.615 37.79 32.56 45.77 1.90
5138 5507 6.293571 GCCAGCAAATCAAAAGCTTTTGTTAT 60.294 34.615 37.79 27.33 45.77 1.89
5139 5508 5.007528 GCCAGCAAATCAAAAGCTTTTGTTA 59.992 36.000 37.79 26.54 45.77 2.41
5140 5509 4.201940 GCCAGCAAATCAAAAGCTTTTGTT 60.202 37.500 37.79 30.94 45.77 2.83
5141 5510 3.313249 GCCAGCAAATCAAAAGCTTTTGT 59.687 39.130 37.79 26.93 45.77 2.83
5142 5511 3.605231 CGCCAGCAAATCAAAAGCTTTTG 60.605 43.478 35.73 35.73 46.70 2.44
5143 5512 2.545106 CGCCAGCAAATCAAAAGCTTTT 59.455 40.909 18.74 18.74 36.26 2.27
5144 5513 2.137523 CGCCAGCAAATCAAAAGCTTT 58.862 42.857 5.69 5.69 36.26 3.51
5145 5514 1.069049 ACGCCAGCAAATCAAAAGCTT 59.931 42.857 0.00 0.00 36.26 3.74
5146 5515 0.675633 ACGCCAGCAAATCAAAAGCT 59.324 45.000 0.00 0.00 39.63 3.74
5147 5516 0.785979 CACGCCAGCAAATCAAAAGC 59.214 50.000 0.00 0.00 0.00 3.51
5148 5517 1.421382 CCACGCCAGCAAATCAAAAG 58.579 50.000 0.00 0.00 0.00 2.27
5149 5518 0.599728 GCCACGCCAGCAAATCAAAA 60.600 50.000 0.00 0.00 0.00 2.44
5150 5519 1.006337 GCCACGCCAGCAAATCAAA 60.006 52.632 0.00 0.00 0.00 2.69
5151 5520 2.650196 GCCACGCCAGCAAATCAA 59.350 55.556 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.