Multiple sequence alignment - TraesCS4B01G179900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G179900 chr4B 100.000 7051 0 0 1 7051 394389965 394382915 0.000000e+00 13021.0
1 TraesCS4B01G179900 chr4B 94.819 193 10 0 1 193 358723717 358723525 1.150000e-77 302.0
2 TraesCS4B01G179900 chr4D 95.816 4087 148 17 949 5021 317202935 317198858 0.000000e+00 6578.0
3 TraesCS4B01G179900 chr4D 90.785 1617 79 17 5174 6753 317198557 317196974 0.000000e+00 2097.0
4 TraesCS4B01G179900 chr4D 82.888 748 74 17 248 957 317204102 317203371 2.160000e-174 623.0
5 TraesCS4B01G179900 chr4D 94.175 103 5 1 5018 5119 317198806 317198704 9.470000e-34 156.0
6 TraesCS4B01G179900 chr4A 95.704 4120 113 23 940 5021 157557543 157561636 0.000000e+00 6569.0
7 TraesCS4B01G179900 chr4A 93.626 1616 63 11 5147 6753 157561875 157563459 0.000000e+00 2377.0
8 TraesCS4B01G179900 chr4A 96.040 303 6 5 6755 7051 157566641 157566943 8.220000e-134 488.0
9 TraesCS4B01G179900 chr4A 97.059 102 3 0 5018 5119 157561688 157561789 9.400000e-39 172.0
10 TraesCS4B01G179900 chr4A 92.308 39 2 1 6559 6597 690220614 690220577 4.000000e-03 54.7
11 TraesCS4B01G179900 chr6B 84.048 746 98 15 5163 5900 50396631 50397363 0.000000e+00 699.0
12 TraesCS4B01G179900 chr6B 96.257 187 7 0 1 187 581453087 581453273 2.470000e-79 307.0
13 TraesCS4B01G179900 chr6B 95.745 188 8 0 1 188 585041738 585041551 3.200000e-78 303.0
14 TraesCS4B01G179900 chr6D 84.423 719 99 10 5186 5900 27521365 27520656 0.000000e+00 695.0
15 TraesCS4B01G179900 chr6A 84.254 724 102 8 5181 5900 30466997 30467712 0.000000e+00 695.0
16 TraesCS4B01G179900 chr5B 95.722 187 8 0 1 187 132748079 132748265 1.150000e-77 302.0
17 TraesCS4B01G179900 chr5B 95.238 189 9 0 1 189 425975171 425974983 4.130000e-77 300.0
18 TraesCS4B01G179900 chr3B 95.722 187 8 0 1 187 740641335 740641149 1.150000e-77 302.0
19 TraesCS4B01G179900 chr7B 95.238 189 9 0 1 189 108743916 108744104 4.130000e-77 300.0
20 TraesCS4B01G179900 chr7B 95.213 188 9 0 1 188 527075206 527075019 1.490000e-76 298.0
21 TraesCS4B01G179900 chr1B 91.038 212 15 4 1 209 614328510 614328720 4.160000e-72 283.0
22 TraesCS4B01G179900 chr3D 82.105 190 28 4 188 376 575968069 575967885 2.630000e-34 158.0
23 TraesCS4B01G179900 chr3D 76.238 202 39 6 627 828 603244424 603244232 1.620000e-16 99.0
24 TraesCS4B01G179900 chr3D 89.583 48 5 0 6550 6597 524715656 524715703 2.120000e-05 62.1
25 TraesCS4B01G179900 chr5A 77.647 170 29 6 267 431 622199424 622199589 2.090000e-15 95.3
26 TraesCS4B01G179900 chrUn 84.043 94 15 0 6516 6609 235115315 235115222 2.710000e-14 91.6
27 TraesCS4B01G179900 chr2D 100.000 28 0 0 6575 6602 351288369 351288342 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G179900 chr4B 394382915 394389965 7050 True 13021.0 13021 100.00000 1 7051 1 chr4B.!!$R2 7050
1 TraesCS4B01G179900 chr4D 317196974 317204102 7128 True 2363.5 6578 90.91600 248 6753 4 chr4D.!!$R1 6505
2 TraesCS4B01G179900 chr4A 157557543 157566943 9400 False 2401.5 6569 95.60725 940 7051 4 chr4A.!!$F1 6111
3 TraesCS4B01G179900 chr6B 50396631 50397363 732 False 699.0 699 84.04800 5163 5900 1 chr6B.!!$F1 737
4 TraesCS4B01G179900 chr6D 27520656 27521365 709 True 695.0 695 84.42300 5186 5900 1 chr6D.!!$R1 714
5 TraesCS4B01G179900 chr6A 30466997 30467712 715 False 695.0 695 84.25400 5181 5900 1 chr6A.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.029167 TGAGACGAACACGTACGCAA 59.971 50.000 16.72 0.00 40.41 4.85 F
928 964 0.036858 AAAAGAGTGAGGGAGAGCGC 60.037 55.000 0.00 0.00 0.00 5.92 F
1709 2190 0.321653 GATGGGTGTTTGACGAGGCT 60.322 55.000 0.00 0.00 0.00 4.58 F
1851 2332 0.957395 GCTGATGGTCAGTGTGGTGG 60.957 60.000 8.58 0.00 45.94 4.61 F
1937 2418 1.666023 GGCCTTTGTTCGCTGCTAAAC 60.666 52.381 0.00 3.02 0.00 2.01 F
2181 2662 1.911357 ACCAATCCTCAGATGCACTCA 59.089 47.619 0.00 0.00 31.29 3.41 F
2840 3321 2.029666 GATCCTCGCCATGACGGG 59.970 66.667 0.36 0.00 34.06 5.28 F
4003 4512 0.976641 TGAGTTGCGAGATCCACCTT 59.023 50.000 0.00 0.00 0.00 3.50 F
5114 5698 0.034574 ATAATGCGTTGCCCTCCACA 60.035 50.000 0.08 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 2246 0.311790 CAACGCCTCTGCAAACATGT 59.688 50.000 0.00 0.00 37.32 3.21 R
2098 2579 0.242017 GTCCTTGTCAGGCATTGCAC 59.758 55.000 11.39 0.64 40.58 4.57 R
3214 3696 1.439543 AGGAAGTTCTGCCTGACCTT 58.560 50.000 2.25 0.00 32.06 3.50 R
3598 4082 3.359950 AGCTTGGAAAGGAATTAGCCTG 58.640 45.455 0.00 0.00 46.35 4.85 R
3651 4135 5.637810 TCGTAACAATTCTGAAGATGGTGAC 59.362 40.000 6.75 0.79 0.00 3.67 R
4003 4512 2.329267 AGGTCCAATGTGACTCTGTCA 58.671 47.619 0.00 0.00 40.50 3.58 R
4595 5111 0.032678 CGATATCCAGCGGCACTTCT 59.967 55.000 1.45 0.00 0.00 2.85 R
5122 5706 0.036388 TCTCGATTGTGGAGGGCAAC 60.036 55.000 0.00 0.00 32.34 4.17 R
6156 6871 0.693049 CTACCAGAGCCACAAACCCT 59.307 55.000 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.671569 CGGAGGGCATAGGAGCGC 62.672 72.222 0.00 0.00 46.61 5.92
23 24 4.008933 GGCATAGGAGCGCCGGAT 62.009 66.667 5.05 0.00 38.82 4.18
24 25 2.031163 GCATAGGAGCGCCGGATT 59.969 61.111 5.05 0.00 39.96 3.01
25 26 2.320587 GCATAGGAGCGCCGGATTG 61.321 63.158 5.05 0.00 39.96 2.67
26 27 2.031163 ATAGGAGCGCCGGATTGC 59.969 61.111 5.05 5.46 39.96 3.56
36 37 3.556625 CGGATTGCGAAACGGACA 58.443 55.556 0.00 0.00 0.00 4.02
37 38 1.863491 CGGATTGCGAAACGGACAA 59.137 52.632 0.00 0.00 0.00 3.18
38 39 0.452122 CGGATTGCGAAACGGACAAC 60.452 55.000 0.00 0.00 0.00 3.32
49 50 1.211709 CGGACAACGGGGAAAATGC 59.788 57.895 0.00 0.00 39.42 3.56
50 51 1.241315 CGGACAACGGGGAAAATGCT 61.241 55.000 0.00 0.00 39.42 3.79
51 52 0.526211 GGACAACGGGGAAAATGCTC 59.474 55.000 0.00 0.00 0.00 4.26
52 53 0.168128 GACAACGGGGAAAATGCTCG 59.832 55.000 0.00 0.00 0.00 5.03
53 54 1.241315 ACAACGGGGAAAATGCTCGG 61.241 55.000 0.00 0.00 0.00 4.63
54 55 0.958382 CAACGGGGAAAATGCTCGGA 60.958 55.000 0.00 0.00 0.00 4.55
55 56 0.034477 AACGGGGAAAATGCTCGGAT 60.034 50.000 0.00 0.00 0.00 4.18
56 57 0.748005 ACGGGGAAAATGCTCGGATG 60.748 55.000 0.00 0.00 0.00 3.51
57 58 1.447317 CGGGGAAAATGCTCGGATGG 61.447 60.000 0.00 0.00 0.00 3.51
58 59 0.106719 GGGGAAAATGCTCGGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
59 60 1.479389 GGGGAAAATGCTCGGATGGAT 60.479 52.381 0.00 0.00 0.00 3.41
60 61 1.610522 GGGAAAATGCTCGGATGGATG 59.389 52.381 0.00 0.00 0.00 3.51
61 62 2.575532 GGAAAATGCTCGGATGGATGA 58.424 47.619 0.00 0.00 0.00 2.92
62 63 2.551459 GGAAAATGCTCGGATGGATGAG 59.449 50.000 0.00 0.00 35.30 2.90
63 64 3.470709 GAAAATGCTCGGATGGATGAGA 58.529 45.455 0.00 0.00 34.04 3.27
64 65 2.540265 AATGCTCGGATGGATGAGAC 57.460 50.000 0.00 0.00 34.04 3.36
65 66 0.316522 ATGCTCGGATGGATGAGACG 59.683 55.000 0.00 0.00 34.04 4.18
66 67 0.751643 TGCTCGGATGGATGAGACGA 60.752 55.000 0.00 0.00 34.04 4.20
67 68 0.385751 GCTCGGATGGATGAGACGAA 59.614 55.000 0.00 0.00 34.04 3.85
68 69 1.866063 GCTCGGATGGATGAGACGAAC 60.866 57.143 0.00 0.00 34.04 3.95
69 70 1.405463 CTCGGATGGATGAGACGAACA 59.595 52.381 0.00 0.00 34.04 3.18
70 71 1.134367 TCGGATGGATGAGACGAACAC 59.866 52.381 0.00 0.00 0.00 3.32
71 72 1.560923 GGATGGATGAGACGAACACG 58.439 55.000 0.00 0.00 0.00 4.49
72 73 1.135083 GGATGGATGAGACGAACACGT 60.135 52.381 0.00 0.00 43.06 4.49
73 74 2.098607 GGATGGATGAGACGAACACGTA 59.901 50.000 0.00 0.00 40.41 3.57
74 75 2.624316 TGGATGAGACGAACACGTAC 57.376 50.000 0.00 0.00 40.41 3.67
75 76 1.135888 TGGATGAGACGAACACGTACG 60.136 52.381 15.01 15.01 40.41 3.67
76 77 0.905839 GATGAGACGAACACGTACGC 59.094 55.000 16.72 0.00 40.41 4.42
77 78 0.239082 ATGAGACGAACACGTACGCA 59.761 50.000 16.72 1.72 40.41 5.24
78 79 0.029167 TGAGACGAACACGTACGCAA 59.971 50.000 16.72 0.00 40.41 4.85
79 80 1.122849 GAGACGAACACGTACGCAAA 58.877 50.000 16.72 0.00 40.41 3.68
80 81 1.518102 GAGACGAACACGTACGCAAAA 59.482 47.619 16.72 0.00 40.41 2.44
81 82 1.256117 AGACGAACACGTACGCAAAAC 59.744 47.619 16.72 2.68 40.41 2.43
82 83 0.043992 ACGAACACGTACGCAAAACG 60.044 50.000 16.72 16.43 45.64 3.60
83 84 2.381210 ACGAACACGTACGCAAAACGA 61.381 47.619 16.72 0.00 42.90 3.85
84 85 4.207313 ACGAACACGTACGCAAAACGAG 62.207 50.000 16.72 2.22 42.90 4.18
94 95 2.617250 GCAAAACGAGATGCACATGA 57.383 45.000 0.00 0.00 42.12 3.07
95 96 3.141002 GCAAAACGAGATGCACATGAT 57.859 42.857 0.00 0.00 42.12 2.45
96 97 2.850060 GCAAAACGAGATGCACATGATG 59.150 45.455 0.00 0.00 42.12 3.07
97 98 3.426560 GCAAAACGAGATGCACATGATGA 60.427 43.478 0.00 0.00 42.12 2.92
98 99 4.093514 CAAAACGAGATGCACATGATGAC 58.906 43.478 0.00 0.00 0.00 3.06
99 100 2.678471 ACGAGATGCACATGATGACA 57.322 45.000 0.00 0.00 0.00 3.58
100 101 3.189618 ACGAGATGCACATGATGACAT 57.810 42.857 0.00 2.24 37.19 3.06
116 117 8.959734 ATGATGACATGATAAAATGCAATACG 57.040 30.769 0.00 0.00 35.21 3.06
117 118 6.857451 TGATGACATGATAAAATGCAATACGC 59.143 34.615 0.00 0.00 42.89 4.42
131 132 5.057217 GCAATACGCAAGCAAATAACATG 57.943 39.130 0.00 0.00 45.62 3.21
132 133 4.026640 GCAATACGCAAGCAAATAACATGG 60.027 41.667 0.00 0.00 45.62 3.66
133 134 1.994916 ACGCAAGCAAATAACATGGC 58.005 45.000 0.00 0.00 45.62 4.40
134 135 1.271934 ACGCAAGCAAATAACATGGCA 59.728 42.857 0.00 0.00 45.62 4.92
135 136 2.288702 ACGCAAGCAAATAACATGGCAA 60.289 40.909 0.00 0.00 45.62 4.52
136 137 2.092524 CGCAAGCAAATAACATGGCAAC 59.907 45.455 0.00 0.00 0.00 4.17
137 138 2.092524 GCAAGCAAATAACATGGCAACG 59.907 45.455 0.00 0.00 42.51 4.10
138 139 3.573598 CAAGCAAATAACATGGCAACGA 58.426 40.909 0.00 0.00 42.51 3.85
139 140 3.216147 AGCAAATAACATGGCAACGAC 57.784 42.857 0.00 0.00 42.51 4.34
140 141 1.910819 GCAAATAACATGGCAACGACG 59.089 47.619 0.00 0.00 42.51 5.12
141 142 2.514902 CAAATAACATGGCAACGACGG 58.485 47.619 0.00 0.00 42.51 4.79
142 143 0.450184 AATAACATGGCAACGACGGC 59.550 50.000 0.00 0.00 42.51 5.68
143 144 1.701545 ATAACATGGCAACGACGGCG 61.702 55.000 10.39 10.39 44.79 6.46
144 145 2.766875 TAACATGGCAACGACGGCGA 62.767 55.000 22.49 0.00 41.64 5.54
145 146 3.418913 CATGGCAACGACGGCGAA 61.419 61.111 22.49 0.00 41.64 4.70
146 147 2.435938 ATGGCAACGACGGCGAAT 60.436 55.556 22.49 1.56 41.64 3.34
147 148 1.153529 ATGGCAACGACGGCGAATA 60.154 52.632 22.49 0.00 41.64 1.75
148 149 0.741574 ATGGCAACGACGGCGAATAA 60.742 50.000 22.49 0.00 41.64 1.40
149 150 1.059838 GGCAACGACGGCGAATAAC 59.940 57.895 22.49 0.67 41.64 1.89
150 151 1.356527 GGCAACGACGGCGAATAACT 61.357 55.000 22.49 0.00 41.64 2.24
151 152 0.247145 GCAACGACGGCGAATAACTG 60.247 55.000 22.49 5.42 41.64 3.16
152 153 0.368907 CAACGACGGCGAATAACTGG 59.631 55.000 22.49 0.00 41.64 4.00
153 154 1.356527 AACGACGGCGAATAACTGGC 61.357 55.000 22.49 0.00 41.64 4.85
154 155 1.807981 CGACGGCGAATAACTGGCA 60.808 57.895 16.62 0.00 40.82 4.92
155 156 1.752501 CGACGGCGAATAACTGGCAG 61.753 60.000 16.62 14.16 40.82 4.85
156 157 0.459585 GACGGCGAATAACTGGCAGA 60.460 55.000 23.66 0.00 0.00 4.26
157 158 0.739813 ACGGCGAATAACTGGCAGAC 60.740 55.000 23.66 5.99 0.00 3.51
158 159 0.739462 CGGCGAATAACTGGCAGACA 60.739 55.000 23.66 8.46 0.00 3.41
159 160 0.727398 GGCGAATAACTGGCAGACAC 59.273 55.000 23.66 6.68 0.00 3.67
160 161 0.727398 GCGAATAACTGGCAGACACC 59.273 55.000 23.66 5.14 0.00 4.16
161 162 1.676014 GCGAATAACTGGCAGACACCT 60.676 52.381 23.66 0.74 0.00 4.00
162 163 2.002586 CGAATAACTGGCAGACACCTG 58.997 52.381 23.66 2.78 43.22 4.00
163 164 2.359900 GAATAACTGGCAGACACCTGG 58.640 52.381 23.66 0.00 40.72 4.45
169 170 3.503363 GCAGACACCTGGCGCATC 61.503 66.667 10.83 0.00 40.72 3.91
170 171 3.190849 CAGACACCTGGCGCATCG 61.191 66.667 10.83 0.00 36.77 3.84
171 172 4.457496 AGACACCTGGCGCATCGG 62.457 66.667 10.83 8.66 0.00 4.18
172 173 4.451150 GACACCTGGCGCATCGGA 62.451 66.667 10.83 0.00 0.00 4.55
173 174 3.740128 GACACCTGGCGCATCGGAT 62.740 63.158 10.83 0.00 0.00 4.18
174 175 2.969238 CACCTGGCGCATCGGATC 60.969 66.667 10.83 0.00 0.00 3.36
175 176 4.241555 ACCTGGCGCATCGGATCC 62.242 66.667 10.83 0.00 0.00 3.36
183 184 4.235762 CATCGGATCCGGGGCGTT 62.236 66.667 32.79 9.25 40.25 4.84
184 185 2.522436 ATCGGATCCGGGGCGTTA 60.522 61.111 32.79 13.17 40.25 3.18
185 186 2.864471 ATCGGATCCGGGGCGTTAC 61.864 63.158 32.79 0.00 40.25 2.50
186 187 3.840594 CGGATCCGGGGCGTTACA 61.841 66.667 26.95 0.00 35.56 2.41
187 188 2.108362 GGATCCGGGGCGTTACAG 59.892 66.667 0.00 0.00 0.00 2.74
188 189 2.428925 GGATCCGGGGCGTTACAGA 61.429 63.158 0.00 0.00 0.00 3.41
189 190 1.518774 GATCCGGGGCGTTACAGAA 59.481 57.895 0.00 0.00 0.00 3.02
190 191 0.808847 GATCCGGGGCGTTACAGAAC 60.809 60.000 0.00 0.00 0.00 3.01
191 192 1.262640 ATCCGGGGCGTTACAGAACT 61.263 55.000 0.00 0.00 33.01 3.01
192 193 1.740296 CCGGGGCGTTACAGAACTG 60.740 63.158 0.00 0.00 33.01 3.16
193 194 1.005394 CGGGGCGTTACAGAACTGT 60.005 57.895 12.10 12.10 46.87 3.55
194 195 0.244450 CGGGGCGTTACAGAACTGTA 59.756 55.000 10.14 10.14 44.42 2.74
207 208 6.780706 ACAGAACTGTAAAATAACCGTGAG 57.219 37.500 5.62 0.00 42.90 3.51
208 209 6.285990 ACAGAACTGTAAAATAACCGTGAGT 58.714 36.000 5.62 0.00 42.90 3.41
209 210 6.764560 ACAGAACTGTAAAATAACCGTGAGTT 59.235 34.615 5.62 0.00 42.90 3.01
210 211 7.281549 ACAGAACTGTAAAATAACCGTGAGTTT 59.718 33.333 5.62 0.00 42.90 2.66
211 212 8.126700 CAGAACTGTAAAATAACCGTGAGTTTT 58.873 33.333 0.00 0.00 40.05 2.43
212 213 8.680001 AGAACTGTAAAATAACCGTGAGTTTTT 58.320 29.630 0.00 0.00 40.05 1.94
213 214 9.934190 GAACTGTAAAATAACCGTGAGTTTTTA 57.066 29.630 0.00 0.00 40.05 1.52
214 215 9.940166 AACTGTAAAATAACCGTGAGTTTTTAG 57.060 29.630 0.00 0.00 40.05 1.85
215 216 9.112725 ACTGTAAAATAACCGTGAGTTTTTAGT 57.887 29.630 0.00 0.00 40.05 2.24
216 217 9.940166 CTGTAAAATAACCGTGAGTTTTTAGTT 57.060 29.630 0.00 0.00 40.05 2.24
223 224 7.614124 AACCGTGAGTTTTTAGTTTTAGACA 57.386 32.000 0.00 0.00 33.89 3.41
224 225 7.614124 ACCGTGAGTTTTTAGTTTTAGACAA 57.386 32.000 0.00 0.00 0.00 3.18
225 226 8.042944 ACCGTGAGTTTTTAGTTTTAGACAAA 57.957 30.769 0.00 0.00 0.00 2.83
226 227 8.513774 ACCGTGAGTTTTTAGTTTTAGACAAAA 58.486 29.630 0.00 0.00 0.00 2.44
227 228 9.344309 CCGTGAGTTTTTAGTTTTAGACAAAAA 57.656 29.630 0.00 0.00 35.46 1.94
243 244 2.180432 AAAAAGTAGCCCGGTCAGAC 57.820 50.000 0.00 0.00 0.00 3.51
244 245 1.053424 AAAAGTAGCCCGGTCAGACA 58.947 50.000 0.00 0.00 0.00 3.41
245 246 1.053424 AAAGTAGCCCGGTCAGACAA 58.947 50.000 0.00 0.00 0.00 3.18
246 247 1.276622 AAGTAGCCCGGTCAGACAAT 58.723 50.000 0.00 0.00 0.00 2.71
259 260 5.872617 CGGTCAGACAATTTATACACCTTCA 59.127 40.000 2.17 0.00 0.00 3.02
261 262 7.527457 GGTCAGACAATTTATACACCTTCAAC 58.473 38.462 2.17 0.00 0.00 3.18
308 309 1.280457 AAAAGCTCCTCCCGATCTGT 58.720 50.000 0.00 0.00 0.00 3.41
322 323 4.261280 CCCGATCTGTAAAAACACGGTTTT 60.261 41.667 0.00 8.40 37.67 2.43
324 325 5.503498 CGATCTGTAAAAACACGGTTTTCA 58.497 37.500 12.95 8.44 32.95 2.69
327 328 6.197364 TCTGTAAAAACACGGTTTTCATGT 57.803 33.333 12.95 3.53 32.95 3.21
330 331 4.457834 AAAAACACGGTTTTCATGTCCA 57.542 36.364 12.95 0.00 0.00 4.02
331 332 4.664150 AAAACACGGTTTTCATGTCCAT 57.336 36.364 8.40 0.00 0.00 3.41
346 347 0.539986 TCCATTTCTACGGTGCCCTC 59.460 55.000 0.00 0.00 0.00 4.30
352 353 0.471191 TCTACGGTGCCCTCTATCGA 59.529 55.000 0.00 0.00 0.00 3.59
413 432 3.782244 GCCGTTCACGCTGCTCTG 61.782 66.667 0.00 0.00 38.18 3.35
418 437 4.724602 TCACGCTGCTCTGGACGC 62.725 66.667 0.00 0.00 0.00 5.19
446 465 3.443925 CCTGCGTCTCTCTCGGCA 61.444 66.667 0.00 0.00 0.00 5.69
460 479 4.424711 GGCAACGGGATGGGAGCA 62.425 66.667 0.00 0.00 0.00 4.26
494 516 2.809010 GGCGAGTCCTGGAGTAGC 59.191 66.667 23.58 23.58 33.86 3.58
495 517 2.787567 GGCGAGTCCTGGAGTAGCC 61.788 68.421 31.33 31.33 43.98 3.93
572 599 3.526931 TGACAACTCCTGGATCGATTC 57.473 47.619 0.00 0.00 0.00 2.52
577 604 0.663688 CTCCTGGATCGATTCGACGT 59.336 55.000 11.56 0.00 39.18 4.34
628 655 1.377536 GTCCTAGACGTAGGCGACTT 58.622 55.000 0.00 0.00 45.26 3.01
644 671 1.062148 GACTTCGTATTTGGCCGCTTC 59.938 52.381 0.00 0.00 0.00 3.86
648 675 1.632046 CGTATTTGGCCGCTTCGTGT 61.632 55.000 0.00 0.00 0.00 4.49
650 677 1.917782 TATTTGGCCGCTTCGTGTGC 61.918 55.000 0.00 0.00 0.00 4.57
669 696 1.934220 CTGTCTGCCGGCTTCGTAGA 61.934 60.000 29.70 18.88 0.00 2.59
680 707 2.424246 GGCTTCGTAGAAGTGAGCTAGT 59.576 50.000 10.91 0.00 45.90 2.57
685 712 5.899120 TCGTAGAAGTGAGCTAGTTGATT 57.101 39.130 0.00 0.00 0.00 2.57
690 717 5.923204 AGAAGTGAGCTAGTTGATTATGGG 58.077 41.667 0.00 0.00 0.00 4.00
698 725 1.034838 GTTGATTATGGGCACGGGCA 61.035 55.000 13.89 0.00 43.71 5.36
700 727 0.106268 TGATTATGGGCACGGGCAAT 60.106 50.000 13.89 7.22 43.71 3.56
704 731 0.107831 TATGGGCACGGGCAATAGAC 59.892 55.000 13.89 0.00 43.71 2.59
706 733 1.377987 GGGCACGGGCAATAGACAA 60.378 57.895 13.89 0.00 43.71 3.18
717 744 4.933400 GGGCAATAGACAAAAGAAGACGTA 59.067 41.667 0.00 0.00 0.00 3.57
720 747 6.367969 GGCAATAGACAAAAGAAGACGTAAGA 59.632 38.462 0.00 0.00 43.62 2.10
781 808 2.515996 TAAAAGGTCTGCTCGGCCGG 62.516 60.000 27.83 17.41 0.00 6.13
800 827 0.239082 GAACCCGCAGTTTAAACCGG 59.761 55.000 22.03 22.03 39.40 5.28
806 833 1.399727 CGCAGTTTAAACCGGCTCTTG 60.400 52.381 22.60 12.05 0.00 3.02
807 834 1.877443 GCAGTTTAAACCGGCTCTTGA 59.123 47.619 19.75 0.00 0.00 3.02
818 845 2.372350 CGGCTCTTGAAACACGTTTTC 58.628 47.619 13.08 13.08 32.11 2.29
819 846 2.727777 GGCTCTTGAAACACGTTTTCC 58.272 47.619 15.71 0.00 32.11 3.13
828 855 1.083015 CACGTTTTCCGCGAACTGG 60.083 57.895 8.23 0.00 41.42 4.00
829 856 2.248835 ACGTTTTCCGCGAACTGGG 61.249 57.895 8.23 0.00 41.42 4.45
830 857 2.248835 CGTTTTCCGCGAACTGGGT 61.249 57.895 8.23 0.00 0.00 4.51
831 858 1.572941 GTTTTCCGCGAACTGGGTC 59.427 57.895 8.23 0.00 0.00 4.46
832 859 0.883370 GTTTTCCGCGAACTGGGTCT 60.883 55.000 8.23 0.00 0.00 3.85
843 879 1.786937 ACTGGGTCTGCTAGAGATGG 58.213 55.000 0.00 0.00 31.63 3.51
861 897 4.182433 TGTCACGCTGGTTGCCCA 62.182 61.111 0.00 0.00 38.87 5.36
889 925 2.029518 GCTTTGGTTGGGCTGCAC 59.970 61.111 0.50 0.00 0.00 4.57
908 944 1.135315 ACAGTGCAGCAACACAAACTG 60.135 47.619 11.18 0.42 43.23 3.16
909 945 1.132834 CAGTGCAGCAACACAAACTGA 59.867 47.619 11.18 0.00 43.23 3.41
913 949 3.061161 GTGCAGCAACACAAACTGAAAAG 59.939 43.478 0.00 0.00 40.40 2.27
914 950 3.056962 TGCAGCAACACAAACTGAAAAGA 60.057 39.130 0.00 0.00 33.10 2.52
915 951 3.549070 GCAGCAACACAAACTGAAAAGAG 59.451 43.478 0.00 0.00 33.10 2.85
916 952 4.737054 CAGCAACACAAACTGAAAAGAGT 58.263 39.130 0.00 0.00 33.10 3.24
917 953 4.560035 CAGCAACACAAACTGAAAAGAGTG 59.440 41.667 0.00 0.00 33.10 3.51
919 955 4.795278 GCAACACAAACTGAAAAGAGTGAG 59.205 41.667 0.00 0.00 0.00 3.51
920 956 5.335127 CAACACAAACTGAAAAGAGTGAGG 58.665 41.667 0.00 0.00 0.00 3.86
921 957 3.947834 ACACAAACTGAAAAGAGTGAGGG 59.052 43.478 0.00 0.00 0.00 4.30
922 958 4.199310 CACAAACTGAAAAGAGTGAGGGA 58.801 43.478 0.00 0.00 0.00 4.20
923 959 4.274459 CACAAACTGAAAAGAGTGAGGGAG 59.726 45.833 0.00 0.00 0.00 4.30
928 964 0.036858 AAAAGAGTGAGGGAGAGCGC 60.037 55.000 0.00 0.00 0.00 5.92
964 1444 5.100259 ACAATCGACTGACAAATACCGTAG 58.900 41.667 0.00 0.00 0.00 3.51
1325 1806 1.682684 ACTCTACACCTCCCTGCCG 60.683 63.158 0.00 0.00 0.00 5.69
1390 1871 3.775654 GGCCAGGAGGGACGTGAG 61.776 72.222 0.00 0.00 40.01 3.51
1409 1890 3.060615 GAAGGCAGGCAGGTGCAG 61.061 66.667 4.01 0.00 45.93 4.41
1423 1904 0.994995 GTGCAGTCACACGCTATCAG 59.005 55.000 0.00 0.00 42.66 2.90
1494 1975 2.979676 CTGTTTGCGGCTGCCTCA 60.980 61.111 16.57 12.87 41.78 3.86
1507 1988 4.457496 CCTCAGGGACGCACGCAT 62.457 66.667 0.00 0.00 33.58 4.73
1565 2046 2.036256 AACACCATCCTGGCTGCC 59.964 61.111 12.87 12.87 42.67 4.85
1586 2067 2.048023 CGTGCATGCTGGGGATGTT 61.048 57.895 20.33 0.00 0.00 2.71
1652 2133 2.900273 GCGGTGAGCTCCATGGTA 59.100 61.111 12.58 0.00 44.04 3.25
1692 2173 1.139058 GTATGGTGGACGAGGCAAGAT 59.861 52.381 0.00 0.00 0.00 2.40
1709 2190 0.321653 GATGGGTGTTTGACGAGGCT 60.322 55.000 0.00 0.00 0.00 4.58
1758 2239 3.827876 TGCCATGATTTCTTGCTTTGAGA 59.172 39.130 0.00 0.00 0.00 3.27
1765 2246 5.593909 TGATTTCTTGCTTTGAGAGGAACAA 59.406 36.000 0.00 0.00 31.84 2.83
1844 2325 2.581354 GAGGCGCTGATGGTCAGT 59.419 61.111 7.64 0.00 45.94 3.41
1851 2332 0.957395 GCTGATGGTCAGTGTGGTGG 60.957 60.000 8.58 0.00 45.94 4.61
1868 2349 3.279116 GCCGCTTGTGCACAGTCA 61.279 61.111 20.59 4.40 39.64 3.41
1892 2373 2.423538 GGTGATTCGAAATGGGGAACTG 59.576 50.000 0.00 0.00 0.00 3.16
1937 2418 1.666023 GGCCTTTGTTCGCTGCTAAAC 60.666 52.381 0.00 3.02 0.00 2.01
2098 2579 5.630264 TCGAAAATGCAATGACATTGTTCAG 59.370 36.000 25.18 16.62 40.12 3.02
2168 2649 4.485163 GTTGTGTGCAGAATAACCAATCC 58.515 43.478 0.00 0.00 0.00 3.01
2181 2662 1.911357 ACCAATCCTCAGATGCACTCA 59.089 47.619 0.00 0.00 31.29 3.41
2193 2674 2.354109 TGCACTCACTGTCTTCGATC 57.646 50.000 0.00 0.00 0.00 3.69
2225 2706 2.367202 GGGAGTCAGGCCGGATGAA 61.367 63.158 9.39 0.00 0.00 2.57
2234 2715 3.321111 TCAGGCCGGATGAAGTTACTATC 59.679 47.826 5.05 0.00 0.00 2.08
2235 2716 3.069586 CAGGCCGGATGAAGTTACTATCA 59.930 47.826 5.05 0.00 0.00 2.15
2258 2739 6.427853 TCATTAGTGTTATATCTGCATGCACC 59.572 38.462 18.46 0.00 0.00 5.01
2615 3096 4.974275 CACTTCTTCAAGTTGATGCAACAG 59.026 41.667 6.36 0.00 45.66 3.16
2840 3321 2.029666 GATCCTCGCCATGACGGG 59.970 66.667 0.36 0.00 34.06 5.28
2968 3449 6.421202 GGATATAGTGTCGTTGAAATGTCTCC 59.579 42.308 0.00 0.00 0.00 3.71
3081 3563 5.419542 ACTTATCTGCGATTTGTGCTTCTA 58.580 37.500 0.00 0.00 0.00 2.10
3088 3570 4.159120 GCGATTTGTGCTTCTAACTTTCC 58.841 43.478 0.00 0.00 0.00 3.13
3094 3576 7.994425 TTTGTGCTTCTAACTTTCCATCATA 57.006 32.000 0.00 0.00 0.00 2.15
3271 3754 6.718294 TCTTTCCATGATATCCATCCATCTG 58.282 40.000 0.00 0.00 31.94 2.90
3483 3966 6.159751 AGAGCAAGGGTAAATTAACTATGGGA 59.840 38.462 0.00 0.00 0.00 4.37
3946 4454 8.886816 GAAGACAATTCACATGTATTGACTTC 57.113 34.615 29.38 29.38 45.72 3.01
3972 4481 9.932699 CAAAAATTCTCATATGTTTGTTGCAAA 57.067 25.926 0.00 0.00 31.12 3.68
4003 4512 0.976641 TGAGTTGCGAGATCCACCTT 59.023 50.000 0.00 0.00 0.00 3.50
4067 4577 6.125029 ACTTGAGGGGACATCAATAAATGAG 58.875 40.000 0.00 0.00 42.53 2.90
4132 4642 4.771114 TCTGGTGAAAAAGAGGACTGAA 57.229 40.909 0.00 0.00 0.00 3.02
4154 4664 5.869649 ATGGTCTGCTTTTAAACCAACTT 57.130 34.783 0.00 0.00 44.48 2.66
4155 4665 5.669164 TGGTCTGCTTTTAAACCAACTTT 57.331 34.783 0.00 0.00 38.80 2.66
4206 4716 8.275040 AGTTCCTGGCACATTACTAGAAAATAT 58.725 33.333 0.00 0.00 38.20 1.28
4295 4805 7.378728 GGTTTTTCTTTACTTTGATCAAGTCCG 59.621 37.037 8.41 1.90 42.62 4.79
4444 4960 4.148128 AGAGCTAACATGAACCATGGAG 57.852 45.455 21.47 3.29 45.16 3.86
4496 5012 1.898472 CTCGAGGGGATATCTGTGCAT 59.102 52.381 3.91 0.00 0.00 3.96
4531 5047 3.092301 AGTTTATGAAAAGGAGGGCAGC 58.908 45.455 0.00 0.00 0.00 5.25
4593 5109 3.365969 CCAGCTGACCGGTCAAATTTAAC 60.366 47.826 35.36 18.82 39.39 2.01
4594 5110 2.817844 AGCTGACCGGTCAAATTTAACC 59.182 45.455 35.36 16.52 39.39 2.85
4595 5111 2.554893 GCTGACCGGTCAAATTTAACCA 59.445 45.455 35.36 11.68 39.39 3.67
4660 5182 6.259829 GGCTAGCTTTTTAAGATGAGAAGAGG 59.740 42.308 15.72 0.00 0.00 3.69
4664 5186 8.105097 AGCTTTTTAAGATGAGAAGAGGAAAC 57.895 34.615 0.00 0.00 0.00 2.78
4743 5266 9.836864 TGGCTAATCAAGGTAATATATGCTATG 57.163 33.333 0.00 0.00 0.00 2.23
4750 5273 9.739276 TCAAGGTAATATATGCTATGGGAAAAG 57.261 33.333 0.00 0.00 0.00 2.27
4776 5302 9.696917 GGTCTCATTGAACAATAACAGAAAAAT 57.303 29.630 0.00 0.00 31.33 1.82
4807 5333 1.974957 TGAGGATCGTTTGAGTGGGAA 59.025 47.619 0.00 0.00 38.61 3.97
4848 5374 7.611467 TGACAGATCTATTTACACAGCCAAAAT 59.389 33.333 0.00 0.00 0.00 1.82
4849 5375 9.109393 GACAGATCTATTTACACAGCCAAAATA 57.891 33.333 0.00 0.00 0.00 1.40
4850 5376 9.461312 ACAGATCTATTTACACAGCCAAAATAA 57.539 29.630 0.00 0.00 0.00 1.40
4888 5417 4.156373 TGATTCACATGTATGGTGCAAGTG 59.844 41.667 0.00 0.00 37.03 3.16
5011 5540 8.492673 AAAACAAGATCTTAGTTGATGCGATA 57.507 30.769 18.05 0.00 0.00 2.92
5021 5550 7.976175 TCTTAGTTGATGCGATACATGGATATC 59.024 37.037 0.00 0.00 39.84 1.63
5022 5551 6.041423 AGTTGATGCGATACATGGATATCA 57.959 37.500 4.83 0.00 39.84 2.15
5023 5552 5.871524 AGTTGATGCGATACATGGATATCAC 59.128 40.000 4.83 0.00 39.84 3.06
5108 5692 4.033932 GGAAAATTCAATAATGCGTTGCCC 59.966 41.667 0.08 0.00 0.00 5.36
5114 5698 0.034574 ATAATGCGTTGCCCTCCACA 60.035 50.000 0.08 0.00 0.00 4.17
5115 5699 0.250945 TAATGCGTTGCCCTCCACAA 60.251 50.000 0.08 0.00 0.00 3.33
5116 5700 0.899717 AATGCGTTGCCCTCCACAAT 60.900 50.000 0.00 0.00 0.00 2.71
5117 5701 1.315257 ATGCGTTGCCCTCCACAATC 61.315 55.000 0.00 0.00 0.00 2.67
5118 5702 2.700773 GCGTTGCCCTCCACAATCC 61.701 63.158 0.00 0.00 0.00 3.01
5119 5703 1.002134 CGTTGCCCTCCACAATCCT 60.002 57.895 0.00 0.00 0.00 3.24
5120 5704 1.308069 CGTTGCCCTCCACAATCCTG 61.308 60.000 0.00 0.00 0.00 3.86
5121 5705 1.304381 TTGCCCTCCACAATCCTGC 60.304 57.895 0.00 0.00 0.00 4.85
5122 5706 2.825836 GCCCTCCACAATCCTGCG 60.826 66.667 0.00 0.00 0.00 5.18
5123 5707 2.671070 CCCTCCACAATCCTGCGT 59.329 61.111 0.00 0.00 0.00 5.24
5124 5708 1.002134 CCCTCCACAATCCTGCGTT 60.002 57.895 0.00 0.00 0.00 4.84
5125 5709 1.308069 CCCTCCACAATCCTGCGTTG 61.308 60.000 0.00 0.00 0.00 4.10
5138 5722 3.039202 GCGTTGCCCTCCACAATCG 62.039 63.158 0.00 0.00 0.00 3.34
5145 5729 1.519455 CCTCCACAATCGAGACGGC 60.519 63.158 0.00 0.00 0.00 5.68
5147 5731 1.078759 CTCCACAATCGAGACGGCAC 61.079 60.000 0.00 0.00 0.00 5.01
5148 5732 1.374125 CCACAATCGAGACGGCACA 60.374 57.895 0.00 0.00 0.00 4.57
5149 5733 0.740868 CCACAATCGAGACGGCACAT 60.741 55.000 0.00 0.00 0.00 3.21
5150 5734 0.371301 CACAATCGAGACGGCACATG 59.629 55.000 0.00 0.00 0.00 3.21
5151 5735 0.740868 ACAATCGAGACGGCACATGG 60.741 55.000 0.00 0.00 0.00 3.66
5153 5737 0.740868 AATCGAGACGGCACATGGTG 60.741 55.000 0.00 0.00 36.51 4.17
5244 5941 2.978978 TGATCAACAAGAGGTGGAGGAA 59.021 45.455 0.00 0.00 31.44 3.36
5380 6079 1.200252 CGAACAGAGACTGGATCGTGT 59.800 52.381 15.54 0.00 38.84 4.49
5381 6080 2.600731 GAACAGAGACTGGATCGTGTG 58.399 52.381 0.00 0.00 35.51 3.82
5445 6146 1.384502 CATGGCCTAGACCCAGGGA 60.385 63.158 14.54 0.00 35.48 4.20
5567 6274 2.110627 GATGGGCAGAGCATCGCT 59.889 61.111 0.00 0.00 43.88 4.93
5583 6290 1.657751 CGCTCTGACATCGGACCTCA 61.658 60.000 0.00 0.00 0.00 3.86
5820 6527 3.009143 GGTCATGGAGGAAAGTTACACCT 59.991 47.826 0.00 0.00 36.68 4.00
5821 6528 4.506802 GGTCATGGAGGAAAGTTACACCTT 60.507 45.833 0.00 0.00 33.89 3.50
5893 6604 2.358267 CAGATCTGCATCCTGAAAAGGC 59.642 50.000 10.38 0.00 0.00 4.35
5922 6633 3.826157 TCTTGCTCGTTTGGGATTCATTT 59.174 39.130 0.00 0.00 0.00 2.32
6036 6747 9.667107 TTTTATACGAGGATTCTGAATTGAGTT 57.333 29.630 4.11 0.00 0.00 3.01
6054 6765 5.977635 TGAGTTCTCAGACAAGTTTCAGAA 58.022 37.500 0.00 0.00 0.00 3.02
6062 6773 6.611381 TCAGACAAGTTTCAGAAAAGTGTTG 58.389 36.000 12.03 9.33 28.67 3.33
6070 6781 6.868339 AGTTTCAGAAAAGTGTTGGTTTTCAG 59.132 34.615 10.12 3.48 43.48 3.02
6086 6797 4.875544 TTTCAGCACACAAGTACAAGTC 57.124 40.909 0.00 0.00 0.00 3.01
6087 6798 3.535280 TCAGCACACAAGTACAAGTCA 57.465 42.857 0.00 0.00 0.00 3.41
6088 6799 4.071961 TCAGCACACAAGTACAAGTCAT 57.928 40.909 0.00 0.00 0.00 3.06
6089 6800 4.450976 TCAGCACACAAGTACAAGTCATT 58.549 39.130 0.00 0.00 0.00 2.57
6090 6801 4.511454 TCAGCACACAAGTACAAGTCATTC 59.489 41.667 0.00 0.00 0.00 2.67
6091 6802 4.273235 CAGCACACAAGTACAAGTCATTCA 59.727 41.667 0.00 0.00 0.00 2.57
6092 6803 5.049198 CAGCACACAAGTACAAGTCATTCAT 60.049 40.000 0.00 0.00 0.00 2.57
6093 6804 5.049198 AGCACACAAGTACAAGTCATTCATG 60.049 40.000 0.00 0.00 0.00 3.07
6094 6805 5.049474 GCACACAAGTACAAGTCATTCATGA 60.049 40.000 0.00 0.00 0.00 3.07
6095 6806 6.348786 GCACACAAGTACAAGTCATTCATGAT 60.349 38.462 0.00 0.00 39.30 2.45
6096 6807 7.587629 CACACAAGTACAAGTCATTCATGATT 58.412 34.615 0.00 0.00 39.30 2.57
6097 6808 8.077991 CACACAAGTACAAGTCATTCATGATTT 58.922 33.333 0.00 0.00 39.30 2.17
6098 6809 9.283768 ACACAAGTACAAGTCATTCATGATTTA 57.716 29.630 0.00 0.00 39.30 1.40
6112 6823 5.003160 TCATGATTTATCAGGCCGTAATGG 58.997 41.667 0.00 0.00 40.64 3.16
6123 6834 5.354792 TCAGGCCGTAATGGTTTATTTACAC 59.645 40.000 0.00 0.00 41.21 2.90
6144 6859 1.598685 GGGTTCAGGTTTTCGCGGA 60.599 57.895 6.13 0.00 0.00 5.54
6156 6871 0.248012 TTCGCGGAGGTGATTTGCTA 59.752 50.000 6.13 0.00 31.66 3.49
6264 6979 3.572255 GGGATGCTTGGTTTTCAGTACAA 59.428 43.478 0.00 0.00 0.00 2.41
6395 7110 0.486879 TGGCTGGGGTTCAAGGATTT 59.513 50.000 0.00 0.00 0.00 2.17
6396 7111 1.713647 TGGCTGGGGTTCAAGGATTTA 59.286 47.619 0.00 0.00 0.00 1.40
6399 7114 4.017037 TGGCTGGGGTTCAAGGATTTATTA 60.017 41.667 0.00 0.00 0.00 0.98
6401 7116 5.602561 GGCTGGGGTTCAAGGATTTATTATT 59.397 40.000 0.00 0.00 0.00 1.40
6402 7117 6.239317 GGCTGGGGTTCAAGGATTTATTATTC 60.239 42.308 0.00 0.00 0.00 1.75
6521 7267 9.628500 GAAATACAAAATGTAGTAATCCCTCCT 57.372 33.333 0.00 0.00 36.14 3.69
6539 7285 6.781014 TCCCTCCTATTCATATTACTTGTCGT 59.219 38.462 0.00 0.00 0.00 4.34
6674 7420 8.295288 GCTAAGAATTGCATGCAGAAAGTATAT 58.705 33.333 21.50 5.92 0.00 0.86
6753 7499 2.737881 GGTAGTATGGGGCGGCACA 61.738 63.158 19.28 19.28 0.00 4.57
6769 10695 2.478831 GCACATAGTCAGCCTCTTAGC 58.521 52.381 0.00 0.00 0.00 3.09
6890 10821 3.817647 CCTTTCTTTCTCTGTGGAACTGG 59.182 47.826 0.00 0.00 38.04 4.00
6911 10842 9.892130 AACTGGTTGTTCCACAAAATTATAAAA 57.108 25.926 0.00 0.00 40.15 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.996124 CGCTCCTATGCCCTCCGG 61.996 72.222 0.00 0.00 0.00 5.14
1 2 4.671569 GCGCTCCTATGCCCTCCG 62.672 72.222 0.00 0.00 0.00 4.63
2 3 4.321966 GGCGCTCCTATGCCCTCC 62.322 72.222 7.64 0.00 45.73 4.30
7 8 2.031163 AATCCGGCGCTCCTATGC 59.969 61.111 7.64 0.00 0.00 3.14
8 9 2.320587 GCAATCCGGCGCTCCTATG 61.321 63.158 7.64 2.86 0.00 2.23
9 10 2.031163 GCAATCCGGCGCTCCTAT 59.969 61.111 7.64 0.00 0.00 2.57
17 18 3.122323 TCCGTTTCGCAATCCGGC 61.122 61.111 0.00 0.00 40.23 6.13
18 19 1.570347 TTGTCCGTTTCGCAATCCGG 61.570 55.000 0.00 0.00 41.75 5.14
19 20 0.452122 GTTGTCCGTTTCGCAATCCG 60.452 55.000 0.00 0.00 38.61 4.18
20 21 0.452122 CGTTGTCCGTTTCGCAATCC 60.452 55.000 0.00 0.00 0.00 3.01
21 22 0.452122 CCGTTGTCCGTTTCGCAATC 60.452 55.000 0.00 0.00 33.66 2.67
22 23 1.572447 CCGTTGTCCGTTTCGCAAT 59.428 52.632 0.00 0.00 33.66 3.56
23 24 2.535788 CCCGTTGTCCGTTTCGCAA 61.536 57.895 0.00 0.00 33.66 4.85
24 25 2.968156 CCCGTTGTCCGTTTCGCA 60.968 61.111 0.00 0.00 33.66 5.10
25 26 3.719144 CCCCGTTGTCCGTTTCGC 61.719 66.667 0.00 0.00 33.66 4.70
26 27 1.159098 TTTCCCCGTTGTCCGTTTCG 61.159 55.000 0.00 0.00 33.66 3.46
27 28 1.023502 TTTTCCCCGTTGTCCGTTTC 58.976 50.000 0.00 0.00 33.66 2.78
28 29 1.338655 CATTTTCCCCGTTGTCCGTTT 59.661 47.619 0.00 0.00 33.66 3.60
29 30 0.955905 CATTTTCCCCGTTGTCCGTT 59.044 50.000 0.00 0.00 33.66 4.44
30 31 1.520600 GCATTTTCCCCGTTGTCCGT 61.521 55.000 0.00 0.00 33.66 4.69
31 32 1.211709 GCATTTTCCCCGTTGTCCG 59.788 57.895 0.00 0.00 0.00 4.79
32 33 0.526211 GAGCATTTTCCCCGTTGTCC 59.474 55.000 0.00 0.00 0.00 4.02
33 34 0.168128 CGAGCATTTTCCCCGTTGTC 59.832 55.000 0.00 0.00 0.00 3.18
34 35 1.241315 CCGAGCATTTTCCCCGTTGT 61.241 55.000 0.00 0.00 0.00 3.32
35 36 0.958382 TCCGAGCATTTTCCCCGTTG 60.958 55.000 0.00 0.00 0.00 4.10
36 37 0.034477 ATCCGAGCATTTTCCCCGTT 60.034 50.000 0.00 0.00 0.00 4.44
37 38 0.748005 CATCCGAGCATTTTCCCCGT 60.748 55.000 0.00 0.00 0.00 5.28
38 39 1.447317 CCATCCGAGCATTTTCCCCG 61.447 60.000 0.00 0.00 0.00 5.73
39 40 0.106719 TCCATCCGAGCATTTTCCCC 60.107 55.000 0.00 0.00 0.00 4.81
40 41 1.610522 CATCCATCCGAGCATTTTCCC 59.389 52.381 0.00 0.00 0.00 3.97
41 42 2.551459 CTCATCCATCCGAGCATTTTCC 59.449 50.000 0.00 0.00 0.00 3.13
42 43 3.249559 GTCTCATCCATCCGAGCATTTTC 59.750 47.826 0.00 0.00 0.00 2.29
43 44 3.209410 GTCTCATCCATCCGAGCATTTT 58.791 45.455 0.00 0.00 0.00 1.82
44 45 2.804572 CGTCTCATCCATCCGAGCATTT 60.805 50.000 0.00 0.00 0.00 2.32
45 46 1.269988 CGTCTCATCCATCCGAGCATT 60.270 52.381 0.00 0.00 0.00 3.56
46 47 0.316522 CGTCTCATCCATCCGAGCAT 59.683 55.000 0.00 0.00 0.00 3.79
47 48 0.751643 TCGTCTCATCCATCCGAGCA 60.752 55.000 0.00 0.00 0.00 4.26
48 49 0.385751 TTCGTCTCATCCATCCGAGC 59.614 55.000 0.00 0.00 0.00 5.03
49 50 1.405463 TGTTCGTCTCATCCATCCGAG 59.595 52.381 0.00 0.00 0.00 4.63
50 51 1.134367 GTGTTCGTCTCATCCATCCGA 59.866 52.381 0.00 0.00 0.00 4.55
51 52 1.560923 GTGTTCGTCTCATCCATCCG 58.439 55.000 0.00 0.00 0.00 4.18
52 53 1.560923 CGTGTTCGTCTCATCCATCC 58.439 55.000 0.00 0.00 0.00 3.51
62 63 4.202803 TCGTTTTGCGTACGTGTTCGTC 62.203 50.000 17.90 0.00 43.33 4.20
63 64 2.381210 TCGTTTTGCGTACGTGTTCGT 61.381 47.619 17.90 0.00 45.34 3.85
64 65 0.226734 TCGTTTTGCGTACGTGTTCG 59.773 50.000 17.90 14.68 42.13 3.95
65 66 1.518102 TCTCGTTTTGCGTACGTGTTC 59.482 47.619 17.90 0.00 42.13 3.18
66 67 1.558741 TCTCGTTTTGCGTACGTGTT 58.441 45.000 17.90 0.00 42.13 3.32
67 68 1.454276 CATCTCGTTTTGCGTACGTGT 59.546 47.619 17.90 0.00 42.13 4.49
68 69 1.782023 GCATCTCGTTTTGCGTACGTG 60.782 52.381 17.90 3.99 42.13 4.49
69 70 0.437295 GCATCTCGTTTTGCGTACGT 59.563 50.000 17.90 0.00 42.13 3.57
70 71 0.436913 TGCATCTCGTTTTGCGTACG 59.563 50.000 11.84 11.84 41.80 3.67
71 72 1.193650 TGTGCATCTCGTTTTGCGTAC 59.806 47.619 0.00 0.00 41.80 3.67
72 73 1.503294 TGTGCATCTCGTTTTGCGTA 58.497 45.000 0.00 0.00 41.80 4.42
73 74 0.874390 ATGTGCATCTCGTTTTGCGT 59.126 45.000 0.00 0.00 41.80 5.24
74 75 1.136000 TCATGTGCATCTCGTTTTGCG 60.136 47.619 0.00 0.00 41.80 4.85
75 76 2.617250 TCATGTGCATCTCGTTTTGC 57.383 45.000 0.00 0.00 39.33 3.68
76 77 4.093514 GTCATCATGTGCATCTCGTTTTG 58.906 43.478 0.00 0.00 0.00 2.44
77 78 3.752747 TGTCATCATGTGCATCTCGTTTT 59.247 39.130 0.00 0.00 0.00 2.43
78 79 3.337358 TGTCATCATGTGCATCTCGTTT 58.663 40.909 0.00 0.00 0.00 3.60
79 80 2.976589 TGTCATCATGTGCATCTCGTT 58.023 42.857 0.00 0.00 0.00 3.85
80 81 2.678471 TGTCATCATGTGCATCTCGT 57.322 45.000 0.00 0.00 0.00 4.18
81 82 3.521524 CATGTCATCATGTGCATCTCG 57.478 47.619 0.00 0.00 44.37 4.04
91 92 7.539710 GCGTATTGCATTTTATCATGTCATCAT 59.460 33.333 0.00 0.00 45.45 2.45
92 93 6.857451 GCGTATTGCATTTTATCATGTCATCA 59.143 34.615 0.00 0.00 45.45 3.07
93 94 7.257006 GCGTATTGCATTTTATCATGTCATC 57.743 36.000 0.00 0.00 45.45 2.92
109 110 4.026640 CCATGTTATTTGCTTGCGTATTGC 60.027 41.667 0.00 0.00 46.70 3.56
110 111 4.026640 GCCATGTTATTTGCTTGCGTATTG 60.027 41.667 0.00 0.00 0.00 1.90
111 112 4.111916 GCCATGTTATTTGCTTGCGTATT 58.888 39.130 0.00 0.00 0.00 1.89
112 113 3.130164 TGCCATGTTATTTGCTTGCGTAT 59.870 39.130 0.00 0.00 0.00 3.06
113 114 2.489722 TGCCATGTTATTTGCTTGCGTA 59.510 40.909 0.00 0.00 0.00 4.42
114 115 1.271934 TGCCATGTTATTTGCTTGCGT 59.728 42.857 0.00 0.00 0.00 5.24
115 116 1.993542 TGCCATGTTATTTGCTTGCG 58.006 45.000 0.00 0.00 0.00 4.85
116 117 2.092524 CGTTGCCATGTTATTTGCTTGC 59.907 45.455 0.00 0.00 0.00 4.01
117 118 3.364621 GTCGTTGCCATGTTATTTGCTTG 59.635 43.478 0.00 0.00 0.00 4.01
118 119 3.574614 GTCGTTGCCATGTTATTTGCTT 58.425 40.909 0.00 0.00 0.00 3.91
119 120 2.414029 CGTCGTTGCCATGTTATTTGCT 60.414 45.455 0.00 0.00 0.00 3.91
120 121 1.910819 CGTCGTTGCCATGTTATTTGC 59.089 47.619 0.00 0.00 0.00 3.68
121 122 2.514902 CCGTCGTTGCCATGTTATTTG 58.485 47.619 0.00 0.00 0.00 2.32
122 123 1.135517 GCCGTCGTTGCCATGTTATTT 60.136 47.619 0.00 0.00 0.00 1.40
123 124 0.450184 GCCGTCGTTGCCATGTTATT 59.550 50.000 0.00 0.00 0.00 1.40
124 125 1.701545 CGCCGTCGTTGCCATGTTAT 61.702 55.000 0.00 0.00 0.00 1.89
125 126 2.384309 CGCCGTCGTTGCCATGTTA 61.384 57.895 0.00 0.00 0.00 2.41
126 127 3.722295 CGCCGTCGTTGCCATGTT 61.722 61.111 0.00 0.00 0.00 2.71
127 128 4.673298 TCGCCGTCGTTGCCATGT 62.673 61.111 0.00 0.00 36.96 3.21
128 129 1.425267 TATTCGCCGTCGTTGCCATG 61.425 55.000 0.00 0.00 36.96 3.66
129 130 0.741574 TTATTCGCCGTCGTTGCCAT 60.742 50.000 0.00 0.00 36.96 4.40
130 131 1.374378 TTATTCGCCGTCGTTGCCA 60.374 52.632 0.00 0.00 36.96 4.92
131 132 1.059838 GTTATTCGCCGTCGTTGCC 59.940 57.895 0.00 0.00 36.96 4.52
132 133 0.247145 CAGTTATTCGCCGTCGTTGC 60.247 55.000 0.00 0.00 36.96 4.17
133 134 0.368907 CCAGTTATTCGCCGTCGTTG 59.631 55.000 0.00 0.00 36.96 4.10
134 135 1.356527 GCCAGTTATTCGCCGTCGTT 61.357 55.000 0.00 0.00 36.96 3.85
135 136 1.808390 GCCAGTTATTCGCCGTCGT 60.808 57.895 0.00 0.00 36.96 4.34
136 137 1.752501 CTGCCAGTTATTCGCCGTCG 61.753 60.000 0.00 0.00 0.00 5.12
137 138 0.459585 TCTGCCAGTTATTCGCCGTC 60.460 55.000 0.00 0.00 0.00 4.79
138 139 0.739813 GTCTGCCAGTTATTCGCCGT 60.740 55.000 0.00 0.00 0.00 5.68
139 140 0.739462 TGTCTGCCAGTTATTCGCCG 60.739 55.000 0.00 0.00 0.00 6.46
140 141 0.727398 GTGTCTGCCAGTTATTCGCC 59.273 55.000 0.00 0.00 0.00 5.54
141 142 0.727398 GGTGTCTGCCAGTTATTCGC 59.273 55.000 0.00 0.00 0.00 4.70
142 143 2.002586 CAGGTGTCTGCCAGTTATTCG 58.997 52.381 0.00 0.00 33.86 3.34
143 144 2.359900 CCAGGTGTCTGCCAGTTATTC 58.640 52.381 0.00 0.00 39.61 1.75
144 145 1.614317 GCCAGGTGTCTGCCAGTTATT 60.614 52.381 0.00 0.00 39.61 1.40
145 146 0.035056 GCCAGGTGTCTGCCAGTTAT 60.035 55.000 0.00 0.00 39.61 1.89
146 147 1.374947 GCCAGGTGTCTGCCAGTTA 59.625 57.895 0.00 0.00 39.61 2.24
147 148 2.113986 GCCAGGTGTCTGCCAGTT 59.886 61.111 0.00 0.00 39.61 3.16
148 149 4.320456 CGCCAGGTGTCTGCCAGT 62.320 66.667 0.00 0.00 39.61 4.00
152 153 3.503363 GATGCGCCAGGTGTCTGC 61.503 66.667 4.18 0.00 39.61 4.26
153 154 3.190849 CGATGCGCCAGGTGTCTG 61.191 66.667 4.18 0.00 40.59 3.51
154 155 4.457496 CCGATGCGCCAGGTGTCT 62.457 66.667 4.18 0.00 0.00 3.41
155 156 3.740128 ATCCGATGCGCCAGGTGTC 62.740 63.158 4.18 0.00 0.00 3.67
156 157 3.740128 GATCCGATGCGCCAGGTGT 62.740 63.158 4.18 0.00 0.00 4.16
157 158 2.969238 GATCCGATGCGCCAGGTG 60.969 66.667 4.18 0.00 0.00 4.00
158 159 4.241555 GGATCCGATGCGCCAGGT 62.242 66.667 4.18 0.00 0.00 4.00
166 167 2.863346 TAACGCCCCGGATCCGATG 61.863 63.158 35.42 24.53 42.83 3.84
167 168 2.522436 TAACGCCCCGGATCCGAT 60.522 61.111 35.42 15.24 42.83 4.18
168 169 3.530260 GTAACGCCCCGGATCCGA 61.530 66.667 35.42 10.81 42.83 4.55
169 170 3.785189 CTGTAACGCCCCGGATCCG 62.785 68.421 27.65 27.65 39.44 4.18
170 171 1.963464 TTCTGTAACGCCCCGGATCC 61.963 60.000 0.73 0.00 0.00 3.36
171 172 0.808847 GTTCTGTAACGCCCCGGATC 60.809 60.000 0.73 0.00 0.00 3.36
172 173 1.219935 GTTCTGTAACGCCCCGGAT 59.780 57.895 0.73 0.00 0.00 4.18
173 174 1.909781 AGTTCTGTAACGCCCCGGA 60.910 57.895 0.73 0.00 40.73 5.14
174 175 1.740296 CAGTTCTGTAACGCCCCGG 60.740 63.158 0.00 0.00 40.73 5.73
175 176 0.244450 TACAGTTCTGTAACGCCCCG 59.756 55.000 9.81 0.00 40.73 5.73
176 177 2.460757 TTACAGTTCTGTAACGCCCC 57.539 50.000 17.86 0.00 40.73 5.80
177 178 6.309436 GTTATTTTACAGTTCTGTAACGCCC 58.691 40.000 20.45 8.16 40.73 6.13
178 179 6.309436 GGTTATTTTACAGTTCTGTAACGCC 58.691 40.000 20.45 14.86 40.73 5.68
179 180 6.011277 CGGTTATTTTACAGTTCTGTAACGC 58.989 40.000 20.45 11.25 40.73 4.84
180 181 7.005380 CACGGTTATTTTACAGTTCTGTAACG 58.995 38.462 20.45 19.88 40.73 3.18
181 182 8.075593 TCACGGTTATTTTACAGTTCTGTAAC 57.924 34.615 20.45 13.36 34.42 2.50
182 183 7.927629 ACTCACGGTTATTTTACAGTTCTGTAA 59.072 33.333 17.86 17.86 33.01 2.41
183 184 7.436118 ACTCACGGTTATTTTACAGTTCTGTA 58.564 34.615 8.38 8.38 0.00 2.74
184 185 6.285990 ACTCACGGTTATTTTACAGTTCTGT 58.714 36.000 10.33 10.33 0.00 3.41
185 186 6.780706 ACTCACGGTTATTTTACAGTTCTG 57.219 37.500 0.00 0.00 0.00 3.02
186 187 7.797038 AAACTCACGGTTATTTTACAGTTCT 57.203 32.000 0.00 0.00 37.12 3.01
187 188 8.845942 AAAAACTCACGGTTATTTTACAGTTC 57.154 30.769 0.00 0.00 37.12 3.01
188 189 9.940166 CTAAAAACTCACGGTTATTTTACAGTT 57.060 29.630 0.00 0.00 37.12 3.16
189 190 9.112725 ACTAAAAACTCACGGTTATTTTACAGT 57.887 29.630 0.00 0.00 37.12 3.55
190 191 9.940166 AACTAAAAACTCACGGTTATTTTACAG 57.060 29.630 0.00 0.00 37.12 2.74
197 198 9.328845 TGTCTAAAACTAAAAACTCACGGTTAT 57.671 29.630 0.00 0.00 37.12 1.89
198 199 8.715191 TGTCTAAAACTAAAAACTCACGGTTA 57.285 30.769 0.00 0.00 37.12 2.85
199 200 7.614124 TGTCTAAAACTAAAAACTCACGGTT 57.386 32.000 0.00 0.00 40.28 4.44
200 201 7.614124 TTGTCTAAAACTAAAAACTCACGGT 57.386 32.000 0.00 0.00 0.00 4.83
201 202 8.898983 TTTTGTCTAAAACTAAAAACTCACGG 57.101 30.769 0.00 0.00 31.10 4.94
224 225 1.418637 TGTCTGACCGGGCTACTTTTT 59.581 47.619 9.82 0.00 0.00 1.94
225 226 1.053424 TGTCTGACCGGGCTACTTTT 58.947 50.000 9.82 0.00 0.00 2.27
226 227 1.053424 TTGTCTGACCGGGCTACTTT 58.947 50.000 9.82 0.00 0.00 2.66
227 228 1.276622 ATTGTCTGACCGGGCTACTT 58.723 50.000 9.82 0.00 0.00 2.24
228 229 1.276622 AATTGTCTGACCGGGCTACT 58.723 50.000 9.82 0.00 0.00 2.57
229 230 2.109425 AAATTGTCTGACCGGGCTAC 57.891 50.000 9.82 7.77 0.00 3.58
230 231 4.406326 TGTATAAATTGTCTGACCGGGCTA 59.594 41.667 9.82 0.00 0.00 3.93
231 232 3.199071 TGTATAAATTGTCTGACCGGGCT 59.801 43.478 9.82 0.00 0.00 5.19
232 233 3.311596 GTGTATAAATTGTCTGACCGGGC 59.688 47.826 6.32 1.57 0.00 6.13
233 234 3.875134 GGTGTATAAATTGTCTGACCGGG 59.125 47.826 6.32 0.00 0.00 5.73
234 235 4.766375 AGGTGTATAAATTGTCTGACCGG 58.234 43.478 0.00 0.00 0.00 5.28
235 236 5.872617 TGAAGGTGTATAAATTGTCTGACCG 59.127 40.000 5.17 0.00 0.00 4.79
236 237 7.361799 GGTTGAAGGTGTATAAATTGTCTGACC 60.362 40.741 5.17 0.00 0.00 4.02
237 238 7.390718 AGGTTGAAGGTGTATAAATTGTCTGAC 59.609 37.037 0.00 0.00 0.00 3.51
238 239 7.458397 AGGTTGAAGGTGTATAAATTGTCTGA 58.542 34.615 0.00 0.00 0.00 3.27
239 240 7.687941 AGGTTGAAGGTGTATAAATTGTCTG 57.312 36.000 0.00 0.00 0.00 3.51
240 241 8.706322 AAAGGTTGAAGGTGTATAAATTGTCT 57.294 30.769 0.00 0.00 0.00 3.41
275 276 3.332034 GAGCTTTTTACCGCACCTCTTA 58.668 45.455 0.00 0.00 0.00 2.10
277 278 1.610886 GGAGCTTTTTACCGCACCTCT 60.611 52.381 0.00 0.00 34.60 3.69
279 280 0.400594 AGGAGCTTTTTACCGCACCT 59.599 50.000 0.00 0.00 41.45 4.00
280 281 0.803117 GAGGAGCTTTTTACCGCACC 59.197 55.000 0.00 0.00 37.19 5.01
281 282 0.803117 GGAGGAGCTTTTTACCGCAC 59.197 55.000 0.00 0.00 0.00 5.34
308 309 5.578005 TGGACATGAAAACCGTGTTTTTA 57.422 34.783 13.56 10.94 44.58 1.52
322 323 2.627945 GCACCGTAGAAATGGACATGA 58.372 47.619 0.00 0.00 35.54 3.07
324 325 1.408266 GGGCACCGTAGAAATGGACAT 60.408 52.381 0.00 0.00 40.86 3.06
346 347 3.484229 CGCCAACTGCTTTCTTTCGATAG 60.484 47.826 0.00 0.00 38.05 2.08
352 353 0.467290 TCCCGCCAACTGCTTTCTTT 60.467 50.000 0.00 0.00 38.05 2.52
401 420 4.724602 GCGTCCAGAGCAGCGTGA 62.725 66.667 0.00 0.00 34.19 4.35
431 450 2.258591 GTTGCCGAGAGAGACGCA 59.741 61.111 0.00 0.00 0.00 5.24
446 465 1.271840 TAGCTTGCTCCCATCCCGTT 61.272 55.000 0.00 0.00 0.00 4.44
457 476 2.105128 CGCCGTAGCTAGCTTGCT 59.895 61.111 24.88 25.51 46.11 3.91
460 479 2.408022 CGTCGCCGTAGCTAGCTT 59.592 61.111 24.88 7.25 36.60 3.74
478 497 2.052690 TGGCTACTCCAGGACTCGC 61.053 63.158 0.00 0.00 40.72 5.03
494 516 2.398498 CCATCGATTCGAACTAGCTGG 58.602 52.381 13.47 10.94 39.99 4.85
495 517 2.034685 TCCCATCGATTCGAACTAGCTG 59.965 50.000 13.47 5.53 39.99 4.24
546 573 3.549019 CGATCCAGGAGTTGTCATCGTAG 60.549 52.174 0.00 0.00 34.97 3.51
552 579 2.159240 CGAATCGATCCAGGAGTTGTCA 60.159 50.000 0.00 0.00 0.00 3.58
619 646 1.472026 GGCCAAATACGAAGTCGCCTA 60.472 52.381 0.00 0.00 43.93 3.93
620 647 0.743345 GGCCAAATACGAAGTCGCCT 60.743 55.000 0.00 0.00 43.93 5.52
628 655 1.079681 ACGAAGCGGCCAAATACGA 60.080 52.632 2.24 0.00 0.00 3.43
650 677 1.517257 CTACGAAGCCGGCAGACAG 60.517 63.158 31.54 16.97 40.78 3.51
669 696 4.080356 TGCCCATAATCAACTAGCTCACTT 60.080 41.667 0.00 0.00 0.00 3.16
680 707 0.323816 TTGCCCGTGCCCATAATCAA 60.324 50.000 0.00 0.00 36.33 2.57
685 712 0.107831 GTCTATTGCCCGTGCCCATA 59.892 55.000 0.00 0.00 36.33 2.74
690 717 1.810151 TCTTTTGTCTATTGCCCGTGC 59.190 47.619 0.00 0.00 38.26 5.34
753 780 6.643360 GCCGAGCAGACCTTTTAAATTAAAAA 59.357 34.615 11.46 0.00 37.22 1.94
757 784 3.692593 GGCCGAGCAGACCTTTTAAATTA 59.307 43.478 0.00 0.00 0.00 1.40
763 790 2.358737 CGGCCGAGCAGACCTTTT 60.359 61.111 24.07 0.00 0.00 2.27
781 808 0.239082 CCGGTTTAAACTGCGGGTTC 59.761 55.000 21.52 3.35 37.12 3.62
782 809 1.798234 GCCGGTTTAAACTGCGGGTT 61.798 55.000 26.81 0.00 40.28 4.11
783 810 2.263021 GCCGGTTTAAACTGCGGGT 61.263 57.895 26.81 0.00 35.26 5.28
784 811 1.918868 GAGCCGGTTTAAACTGCGGG 61.919 60.000 26.81 19.20 35.26 6.13
785 812 0.953960 AGAGCCGGTTTAAACTGCGG 60.954 55.000 23.69 23.69 36.98 5.69
786 813 0.872388 AAGAGCCGGTTTAAACTGCG 59.128 50.000 19.88 14.25 33.91 5.18
787 814 1.877443 TCAAGAGCCGGTTTAAACTGC 59.123 47.619 19.88 19.52 33.91 4.40
791 818 3.242804 CGTGTTTCAAGAGCCGGTTTAAA 60.243 43.478 1.90 0.00 0.00 1.52
800 827 2.372350 CGGAAAACGTGTTTCAAGAGC 58.628 47.619 18.39 6.19 37.93 4.09
818 845 2.890847 CTAGCAGACCCAGTTCGCGG 62.891 65.000 6.13 0.00 0.00 6.46
819 846 1.517257 CTAGCAGACCCAGTTCGCG 60.517 63.158 0.00 0.00 0.00 5.87
828 855 2.103373 TGACACCATCTCTAGCAGACC 58.897 52.381 0.00 0.00 32.26 3.85
829 856 2.478709 CGTGACACCATCTCTAGCAGAC 60.479 54.545 0.00 0.00 32.26 3.51
830 857 1.745653 CGTGACACCATCTCTAGCAGA 59.254 52.381 0.00 0.00 34.78 4.26
831 858 1.800655 GCGTGACACCATCTCTAGCAG 60.801 57.143 0.00 0.00 0.00 4.24
832 859 0.173481 GCGTGACACCATCTCTAGCA 59.827 55.000 0.00 0.00 0.00 3.49
861 897 2.056906 AACCAAAGCCGGACTGCTCT 62.057 55.000 5.05 0.00 41.80 4.09
871 907 3.233231 TGCAGCCCAACCAAAGCC 61.233 61.111 0.00 0.00 0.00 4.35
873 909 1.364901 CTGTGCAGCCCAACCAAAG 59.635 57.895 0.00 0.00 0.00 2.77
889 925 1.132834 TCAGTTTGTGTTGCTGCACTG 59.867 47.619 0.00 4.77 39.89 3.66
908 944 2.003196 CGCTCTCCCTCACTCTTTTC 57.997 55.000 0.00 0.00 0.00 2.29
909 945 0.036858 GCGCTCTCCCTCACTCTTTT 60.037 55.000 0.00 0.00 0.00 2.27
913 949 4.863925 GCGCGCTCTCCCTCACTC 62.864 72.222 26.67 0.00 0.00 3.51
920 956 4.567385 CTCTCTGGCGCGCTCTCC 62.567 72.222 32.29 15.04 0.00 3.71
921 957 4.567385 CCTCTCTGGCGCGCTCTC 62.567 72.222 32.29 15.45 0.00 3.20
923 959 3.649277 TTTCCTCTCTGGCGCGCTC 62.649 63.158 32.29 21.22 35.26 5.03
928 964 1.002366 CGATTGTTTCCTCTCTGGCG 58.998 55.000 0.00 0.00 35.26 5.69
933 969 3.914312 TGTCAGTCGATTGTTTCCTCTC 58.086 45.455 7.87 0.00 0.00 3.20
989 1470 3.958147 GAAGCAGCGCCACCAGCTA 62.958 63.158 2.29 0.00 44.06 3.32
1373 1854 3.775654 CTCACGTCCCTCCTGGCC 61.776 72.222 0.00 0.00 0.00 5.36
1390 1871 3.368571 GCACCTGCCTGCCTTCAC 61.369 66.667 0.00 0.00 34.31 3.18
1409 1890 1.413767 CGTGCCTGATAGCGTGTGAC 61.414 60.000 0.00 0.00 34.65 3.67
1423 1904 2.869503 ATCATCACCGAACCCGTGCC 62.870 60.000 0.00 0.00 0.00 5.01
1507 1988 2.028484 GACCTGCGTCGAACACCA 59.972 61.111 0.00 0.00 0.00 4.17
1565 2046 1.146930 ATCCCCAGCATGCACGTAG 59.853 57.895 21.98 4.40 31.97 3.51
1586 2067 2.933287 ACCCCAACCGCCTGATCA 60.933 61.111 0.00 0.00 0.00 2.92
1652 2133 1.288932 CCCCTCCTCCCAAACAATGAT 59.711 52.381 0.00 0.00 0.00 2.45
1692 2173 1.227823 CAGCCTCGTCAAACACCCA 60.228 57.895 0.00 0.00 0.00 4.51
1709 2190 3.270027 CGTGAAAATATCCCTGCACTCA 58.730 45.455 0.00 0.00 0.00 3.41
1758 2239 2.624838 CCTCTGCAAACATGTTGTTCCT 59.375 45.455 12.82 0.00 40.14 3.36
1765 2246 0.311790 CAACGCCTCTGCAAACATGT 59.688 50.000 0.00 0.00 37.32 3.21
1787 2268 1.277326 GACGCATGCACGAGAACATA 58.723 50.000 19.57 0.00 36.70 2.29
1851 2332 3.245948 CTGACTGTGCACAAGCGGC 62.246 63.158 21.98 12.39 46.23 6.53
1868 2349 2.196595 TCCCCATTTCGAATCACCTCT 58.803 47.619 0.00 0.00 0.00 3.69
1937 2418 3.692593 TGTGGATCAGCACATTCTGAATG 59.307 43.478 24.79 24.79 45.17 2.67
2065 2546 2.987413 TGCATTTTCGACATGACCAC 57.013 45.000 0.00 0.00 0.00 4.16
2098 2579 0.242017 GTCCTTGTCAGGCATTGCAC 59.758 55.000 11.39 0.64 40.58 4.57
2168 2649 3.252400 GAAGACAGTGAGTGCATCTGAG 58.748 50.000 14.64 0.00 33.93 3.35
2181 2662 1.202348 TCGCATGTGATCGAAGACAGT 59.798 47.619 4.45 0.00 42.51 3.55
2193 2674 4.100084 TCCCTGGGCTCGCATGTG 62.100 66.667 8.22 0.00 0.00 3.21
2234 2715 6.205270 TGGTGCATGCAGATATAACACTAATG 59.795 38.462 23.41 0.00 0.00 1.90
2235 2716 6.298361 TGGTGCATGCAGATATAACACTAAT 58.702 36.000 23.41 0.00 0.00 1.73
2258 2739 3.606595 TTCTCCAGAGCAGACAGATTG 57.393 47.619 0.00 0.00 0.00 2.67
2968 3449 6.198778 CGATCAACTGCTAGAATCTCAAGAAG 59.801 42.308 0.00 0.00 0.00 2.85
3081 3563 9.295825 TCAAAATACACACTATGATGGAAAGTT 57.704 29.630 0.00 0.00 0.00 2.66
3088 3570 9.060347 AGGCTTATCAAAATACACACTATGATG 57.940 33.333 0.00 0.00 0.00 3.07
3094 3576 6.490040 ACAACAGGCTTATCAAAATACACACT 59.510 34.615 0.00 0.00 0.00 3.55
3214 3696 1.439543 AGGAAGTTCTGCCTGACCTT 58.560 50.000 2.25 0.00 32.06 3.50
3271 3754 3.713826 TGTTCCCTGTTCAGTATTCCC 57.286 47.619 0.00 0.00 0.00 3.97
3483 3966 5.185828 GCCTTTTTCTGTATCACCTTTCCAT 59.814 40.000 0.00 0.00 0.00 3.41
3586 4070 5.190726 AGGAATTAGCCTGGATATAGCCTTC 59.809 44.000 8.79 1.71 36.76 3.46
3598 4082 3.359950 AGCTTGGAAAGGAATTAGCCTG 58.640 45.455 0.00 0.00 46.35 4.85
3651 4135 5.637810 TCGTAACAATTCTGAAGATGGTGAC 59.362 40.000 6.75 0.79 0.00 3.67
3946 4454 9.932699 TTTGCAACAAACATATGAGAATTTTTG 57.067 25.926 10.38 10.70 34.29 2.44
3962 4471 6.047231 TCACATGATTCACATTTGCAACAAA 58.953 32.000 0.00 0.00 36.83 2.83
3972 4481 3.337358 TCGCAACTCACATGATTCACAT 58.663 40.909 0.00 0.00 40.17 3.21
4003 4512 2.329267 AGGTCCAATGTGACTCTGTCA 58.671 47.619 0.00 0.00 40.50 3.58
4067 4577 7.288672 CAACAGTAAAAAGATCGGTCACTTAC 58.711 38.462 0.00 2.63 0.00 2.34
4132 4642 5.869649 AAGTTGGTTTAAAAGCAGACCAT 57.130 34.783 0.00 0.00 41.45 3.55
4154 4664 6.545666 CACAGTGGGTATCCAGCAATATTTAA 59.454 38.462 0.00 0.00 45.05 1.52
4155 4665 6.061441 CACAGTGGGTATCCAGCAATATTTA 58.939 40.000 0.00 0.00 45.05 1.40
4295 4805 2.228925 CGGTAACTACCTAGGAGCCTC 58.771 57.143 17.98 1.06 44.25 4.70
4510 5026 3.092301 GCTGCCCTCCTTTTCATAAACT 58.908 45.455 0.00 0.00 0.00 2.66
4554 5070 2.096496 GCTGGTCATGTACAGATTGCAC 59.904 50.000 18.93 0.00 36.86 4.57
4594 5110 1.506493 GATATCCAGCGGCACTTCTG 58.494 55.000 1.45 0.00 0.00 3.02
4595 5111 0.032678 CGATATCCAGCGGCACTTCT 59.967 55.000 1.45 0.00 0.00 2.85
4660 5182 6.833342 AATGTGAAGCTTGTTTCATGTTTC 57.167 33.333 2.10 5.69 39.13 2.78
4664 5186 5.107607 GCTGAAATGTGAAGCTTGTTTCATG 60.108 40.000 18.39 14.95 39.13 3.07
4742 5265 4.177537 TGTTCAATGAGACCTTTTCCCA 57.822 40.909 0.00 0.00 0.00 4.37
4743 5266 5.728637 ATTGTTCAATGAGACCTTTTCCC 57.271 39.130 0.00 0.00 0.00 3.97
4746 5269 8.463930 TCTGTTATTGTTCAATGAGACCTTTT 57.536 30.769 8.11 0.00 0.00 2.27
4750 5273 9.696917 ATTTTTCTGTTATTGTTCAATGAGACC 57.303 29.630 8.11 0.00 0.00 3.85
4776 5302 5.762711 TCAAACGATCCTCATCTTCAAACAA 59.237 36.000 0.00 0.00 0.00 2.83
4850 5376 9.462606 ACATGTGAATCAGCATCATAATGATAT 57.537 29.630 0.00 0.00 34.28 1.63
4869 5398 3.415457 TCACTTGCACCATACATGTGA 57.585 42.857 9.11 8.00 44.89 3.58
4888 5417 1.739562 CGTCTGGCAGGCAGAGTTC 60.740 63.158 26.45 14.14 0.00 3.01
5011 5540 3.473923 TGCATGTCGTGATATCCATGT 57.526 42.857 16.31 0.00 37.57 3.21
5021 5550 0.316442 GCGATGGATTGCATGTCGTG 60.316 55.000 0.00 0.00 37.15 4.35
5022 5551 0.462581 AGCGATGGATTGCATGTCGT 60.463 50.000 0.00 0.00 39.70 4.34
5023 5552 0.659427 AAGCGATGGATTGCATGTCG 59.341 50.000 0.00 0.00 39.70 4.35
5108 5692 1.503542 GCAACGCAGGATTGTGGAG 59.496 57.895 0.00 0.00 39.15 3.86
5114 5698 2.044946 GGAGGGCAACGCAGGATT 60.045 61.111 0.00 0.00 37.60 3.01
5115 5699 3.329889 TGGAGGGCAACGCAGGAT 61.330 61.111 0.00 0.00 37.60 3.24
5116 5700 4.329545 GTGGAGGGCAACGCAGGA 62.330 66.667 0.00 0.00 37.60 3.86
5117 5701 4.641645 TGTGGAGGGCAACGCAGG 62.642 66.667 0.00 0.00 37.60 4.85
5118 5702 1.926511 GATTGTGGAGGGCAACGCAG 61.927 60.000 0.00 0.00 37.60 5.18
5119 5703 1.971167 GATTGTGGAGGGCAACGCA 60.971 57.895 0.00 0.00 37.60 5.24
5120 5704 2.877691 GATTGTGGAGGGCAACGC 59.122 61.111 0.00 0.00 37.60 4.84
5121 5705 1.361668 CTCGATTGTGGAGGGCAACG 61.362 60.000 0.00 0.00 37.60 4.10
5122 5706 0.036388 TCTCGATTGTGGAGGGCAAC 60.036 55.000 0.00 0.00 32.34 4.17
5123 5707 0.036388 GTCTCGATTGTGGAGGGCAA 60.036 55.000 0.00 0.00 32.34 4.52
5124 5708 1.596934 GTCTCGATTGTGGAGGGCA 59.403 57.895 0.00 0.00 32.34 5.36
5125 5709 1.519455 CGTCTCGATTGTGGAGGGC 60.519 63.158 0.00 0.00 32.34 5.19
5138 5722 1.453155 AAATCACCATGTGCCGTCTC 58.547 50.000 0.00 0.00 32.98 3.36
5236 5933 6.385649 TCTTGTATTTGTTGTTTCCTCCAC 57.614 37.500 0.00 0.00 0.00 4.02
5380 6079 4.074259 CCTGTCATGGTTTGATGAGAACA 58.926 43.478 0.00 0.00 36.54 3.18
5381 6080 3.119708 GCCTGTCATGGTTTGATGAGAAC 60.120 47.826 0.00 0.00 36.54 3.01
5422 6123 0.548926 TGGGTCTAGGCCATGGTCAA 60.549 55.000 20.74 0.00 0.00 3.18
5423 6124 0.982852 CTGGGTCTAGGCCATGGTCA 60.983 60.000 20.74 3.57 0.00 4.02
5567 6274 1.177401 CAGTGAGGTCCGATGTCAGA 58.823 55.000 0.00 0.00 0.00 3.27
5568 6275 0.459237 GCAGTGAGGTCCGATGTCAG 60.459 60.000 0.00 0.00 0.00 3.51
5820 6527 0.885150 TTTGCATACGGGCACGACAA 60.885 50.000 19.19 11.22 44.86 3.18
5821 6528 0.675208 ATTTGCATACGGGCACGACA 60.675 50.000 19.19 4.42 44.86 4.35
5893 6604 2.031682 CCCAAACGAGCAAGAAACAGAG 60.032 50.000 0.00 0.00 0.00 3.35
5922 6633 8.868522 ACAGAAATTCCAGATACATCTCAAAA 57.131 30.769 0.00 0.00 34.22 2.44
5998 6709 7.463961 TCCTCGTATAAAACTCTGAAGTCTT 57.536 36.000 0.00 0.00 33.48 3.01
6036 6747 6.173339 ACACTTTTCTGAAACTTGTCTGAGA 58.827 36.000 1.58 0.00 0.00 3.27
6054 6765 3.006323 TGTGTGCTGAAAACCAACACTTT 59.994 39.130 5.90 0.00 41.26 2.66
6062 6773 4.142469 ACTTGTACTTGTGTGCTGAAAACC 60.142 41.667 0.00 0.00 0.00 3.27
6070 6781 4.811555 TGAATGACTTGTACTTGTGTGC 57.188 40.909 0.00 0.00 0.00 4.57
6086 6797 6.558771 TTACGGCCTGATAAATCATGAATG 57.441 37.500 0.00 0.00 36.02 2.67
6087 6798 6.151648 CCATTACGGCCTGATAAATCATGAAT 59.848 38.462 0.00 0.00 36.02 2.57
6088 6799 5.473162 CCATTACGGCCTGATAAATCATGAA 59.527 40.000 0.00 0.00 36.02 2.57
6089 6800 5.003160 CCATTACGGCCTGATAAATCATGA 58.997 41.667 0.00 0.00 36.02 3.07
6090 6801 4.761739 ACCATTACGGCCTGATAAATCATG 59.238 41.667 0.00 0.00 39.03 3.07
6091 6802 4.985538 ACCATTACGGCCTGATAAATCAT 58.014 39.130 0.00 0.00 39.03 2.45
6092 6803 4.431416 ACCATTACGGCCTGATAAATCA 57.569 40.909 0.00 0.00 39.03 2.57
6093 6804 5.767816 AAACCATTACGGCCTGATAAATC 57.232 39.130 0.00 0.00 39.03 2.17
6094 6805 7.833285 AATAAACCATTACGGCCTGATAAAT 57.167 32.000 0.00 0.00 39.03 1.40
6095 6806 7.648039 AAATAAACCATTACGGCCTGATAAA 57.352 32.000 0.00 0.00 39.03 1.40
6096 6807 7.774157 TGTAAATAAACCATTACGGCCTGATAA 59.226 33.333 0.00 0.00 39.03 1.75
6097 6808 7.227116 GTGTAAATAAACCATTACGGCCTGATA 59.773 37.037 0.00 0.00 39.03 2.15
6098 6809 6.038936 GTGTAAATAAACCATTACGGCCTGAT 59.961 38.462 0.00 0.00 39.03 2.90
6099 6810 5.354792 GTGTAAATAAACCATTACGGCCTGA 59.645 40.000 0.00 0.00 39.03 3.86
6100 6811 5.124138 TGTGTAAATAAACCATTACGGCCTG 59.876 40.000 0.00 0.00 39.03 4.85
6101 6812 5.254901 TGTGTAAATAAACCATTACGGCCT 58.745 37.500 0.00 0.00 39.03 5.19
6112 6823 5.074804 ACCTGAACCCCTGTGTAAATAAAC 58.925 41.667 0.00 0.00 0.00 2.01
6123 6834 1.852067 CGCGAAAACCTGAACCCCTG 61.852 60.000 0.00 0.00 0.00 4.45
6144 6859 3.157087 CACAAACCCTAGCAAATCACCT 58.843 45.455 0.00 0.00 0.00 4.00
6156 6871 0.693049 CTACCAGAGCCACAAACCCT 59.307 55.000 0.00 0.00 0.00 4.34
6210 6925 7.165460 TCTTTGACGTCCAGATAATCTTACA 57.835 36.000 14.12 0.00 0.00 2.41
6264 6979 5.810074 CCAGAACGGAAAACAAGACAAAATT 59.190 36.000 0.00 0.00 36.56 1.82
6322 7037 7.228308 ACTTCTTTCTCAGATCCTTTTCTGTTG 59.772 37.037 1.76 0.00 43.02 3.33
6323 7038 7.286313 ACTTCTTTCTCAGATCCTTTTCTGTT 58.714 34.615 1.76 0.00 43.02 3.16
6324 7039 6.836242 ACTTCTTTCTCAGATCCTTTTCTGT 58.164 36.000 1.76 0.00 43.02 3.41
6325 7040 7.583230 CAACTTCTTTCTCAGATCCTTTTCTG 58.417 38.462 0.00 0.00 43.70 3.02
6326 7041 6.206438 GCAACTTCTTTCTCAGATCCTTTTCT 59.794 38.462 0.00 0.00 0.00 2.52
6327 7042 6.377780 GCAACTTCTTTCTCAGATCCTTTTC 58.622 40.000 0.00 0.00 0.00 2.29
6328 7043 5.242615 GGCAACTTCTTTCTCAGATCCTTTT 59.757 40.000 0.00 0.00 0.00 2.27
6329 7044 4.764308 GGCAACTTCTTTCTCAGATCCTTT 59.236 41.667 0.00 0.00 0.00 3.11
6330 7045 4.331108 GGCAACTTCTTTCTCAGATCCTT 58.669 43.478 0.00 0.00 0.00 3.36
6331 7046 3.949132 GGCAACTTCTTTCTCAGATCCT 58.051 45.455 0.00 0.00 0.00 3.24
6395 7110 6.838612 AGCCCCTTATGCAAACAAGAATAATA 59.161 34.615 0.00 0.00 0.00 0.98
6396 7111 5.662657 AGCCCCTTATGCAAACAAGAATAAT 59.337 36.000 0.00 0.00 0.00 1.28
6399 7114 3.444029 AGCCCCTTATGCAAACAAGAAT 58.556 40.909 0.00 0.00 0.00 2.40
6401 7116 2.603075 AGCCCCTTATGCAAACAAGA 57.397 45.000 0.00 0.00 0.00 3.02
6402 7117 2.427095 GGTAGCCCCTTATGCAAACAAG 59.573 50.000 0.00 0.00 0.00 3.16
6465 7211 3.726291 TTTGTTGGCCTCTGCTTAAAC 57.274 42.857 3.32 0.00 37.74 2.01
6474 7220 2.814336 CTCTACTGGTTTTGTTGGCCTC 59.186 50.000 3.32 0.00 0.00 4.70
6521 7267 9.602568 TTAAAGCCACGACAAGTAATATGAATA 57.397 29.630 0.00 0.00 0.00 1.75
6523 7269 7.908827 TTAAAGCCACGACAAGTAATATGAA 57.091 32.000 0.00 0.00 0.00 2.57
6539 7285 6.885952 TGTACTAAAGTTGCATTAAAGCCA 57.114 33.333 0.00 0.00 0.00 4.75
6674 7420 7.339721 CAGGAAGGACTCACTGTATTCTTAGTA 59.660 40.741 0.00 0.00 0.00 1.82
6687 7433 1.633774 TCTGGTCAGGAAGGACTCAC 58.366 55.000 0.00 0.00 37.91 3.51
6753 7499 8.713708 TTATCTTAAGCTAAGAGGCTGACTAT 57.286 34.615 0.00 0.00 46.90 2.12
6769 10695 6.544928 AAAATTGTGCCCCCTTATCTTAAG 57.455 37.500 0.00 0.00 0.00 1.85
6911 10842 4.253685 GTTGTGTATGCATCAGTACAGGT 58.746 43.478 0.19 0.00 31.95 4.00
7016 10948 4.902448 GGAGTTCCCTATGTCTTGGTAGAT 59.098 45.833 0.00 0.00 31.86 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.