Multiple sequence alignment - TraesCS4B01G179700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G179700 chr4B 100.000 3996 0 0 1 3996 394378139 394374144 0.000000e+00 7380.0
1 TraesCS4B01G179700 chr4B 94.237 642 35 2 3097 3737 624138210 624137570 0.000000e+00 979.0
2 TraesCS4B01G179700 chr4B 95.238 315 12 3 2720 3031 181525557 181525871 2.770000e-136 496.0
3 TraesCS4B01G179700 chr4B 98.855 262 3 0 3735 3996 661738964 661738703 6.050000e-128 468.0
4 TraesCS4B01G179700 chr4A 94.737 1425 57 9 1300 2716 157691665 157693079 0.000000e+00 2200.0
5 TraesCS4B01G179700 chr4A 97.537 1015 23 2 2721 3734 615019533 615020546 0.000000e+00 1735.0
6 TraesCS4B01G179700 chr4A 87.598 1016 85 21 305 1305 157572418 157573407 0.000000e+00 1140.0
7 TraesCS4B01G179700 chr4A 96.141 311 12 0 2721 3031 739615871 739616181 3.560000e-140 508.0
8 TraesCS4B01G179700 chr4A 95.238 315 12 3 2720 3031 31118999 31118685 2.770000e-136 496.0
9 TraesCS4B01G179700 chr4A 91.120 259 10 1 24 282 157571769 157572014 4.950000e-89 339.0
10 TraesCS4B01G179700 chr4D 95.714 1330 40 7 1403 2716 317181719 317180391 0.000000e+00 2124.0
11 TraesCS4B01G179700 chr4D 90.429 1118 71 18 305 1404 317183212 317182113 0.000000e+00 1439.0
12 TraesCS4B01G179700 chr4D 96.400 250 7 1 34 281 317183549 317183300 1.030000e-110 411.0
13 TraesCS4B01G179700 chr4D 100.000 36 0 0 1 36 317183963 317183928 2.580000e-07 67.6
14 TraesCS4B01G179700 chr5B 96.958 1019 29 2 2720 3737 502376030 502375013 0.000000e+00 1709.0
15 TraesCS4B01G179700 chr5B 92.844 545 14 1 3215 3734 442369879 442370423 0.000000e+00 767.0
16 TraesCS4B01G179700 chr5B 92.238 554 15 5 3060 3587 144585226 144584675 0.000000e+00 760.0
17 TraesCS4B01G179700 chr5B 95.238 315 12 3 2720 3031 478916026 478915712 2.770000e-136 496.0
18 TraesCS4B01G179700 chr2A 96.650 1015 33 1 2721 3734 683144167 683145181 0.000000e+00 1685.0
19 TraesCS4B01G179700 chr2A 98.855 262 3 0 3735 3996 511526450 511526189 6.050000e-128 468.0
20 TraesCS4B01G179700 chr7A 92.891 1041 44 6 2721 3734 21020168 21021205 0.000000e+00 1485.0
21 TraesCS4B01G179700 chr7A 95.541 314 11 3 2721 3031 649396919 649396606 2.140000e-137 499.0
22 TraesCS4B01G179700 chr2B 92.582 701 24 6 3060 3734 796434730 796435428 0.000000e+00 981.0
23 TraesCS4B01G179700 chr2B 98.855 262 3 0 3735 3996 316566762 316566501 6.050000e-128 468.0
24 TraesCS4B01G179700 chr3B 92.472 704 24 7 3060 3737 183199425 183198725 0.000000e+00 979.0
25 TraesCS4B01G179700 chr3B 98.855 262 3 0 3735 3996 394980420 394980159 6.050000e-128 468.0
26 TraesCS4B01G179700 chr1B 92.011 701 28 4 3060 3734 189133129 189133827 0.000000e+00 959.0
27 TraesCS4B01G179700 chr7B 93.178 645 40 3 3097 3737 171137933 171137289 0.000000e+00 944.0
28 TraesCS4B01G179700 chr7B 92.701 548 15 9 3215 3737 707723510 707722963 0.000000e+00 767.0
29 TraesCS4B01G179700 chr7B 80.992 242 32 10 3318 3553 744332859 744332626 3.170000e-41 180.0
30 TraesCS4B01G179700 chr1A 92.518 548 15 10 3215 3737 492133561 492133015 0.000000e+00 761.0
31 TraesCS4B01G179700 chr1A 98.155 271 5 0 3726 3996 588037424 588037694 1.300000e-129 473.0
32 TraesCS4B01G179700 chr1A 98.855 262 3 0 3735 3996 19535031 19535292 6.050000e-128 468.0
33 TraesCS4B01G179700 chr6A 98.855 262 3 0 3735 3996 65808187 65808448 6.050000e-128 468.0
34 TraesCS4B01G179700 chr6A 98.855 262 3 0 3735 3996 98721210 98721471 6.050000e-128 468.0
35 TraesCS4B01G179700 chr3A 98.479 263 4 0 3734 3996 668968959 668968697 7.820000e-127 464.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G179700 chr4B 394374144 394378139 3995 True 7380.0 7380 100.00000 1 3996 1 chr4B.!!$R1 3995
1 TraesCS4B01G179700 chr4B 624137570 624138210 640 True 979.0 979 94.23700 3097 3737 1 chr4B.!!$R2 640
2 TraesCS4B01G179700 chr4A 157691665 157693079 1414 False 2200.0 2200 94.73700 1300 2716 1 chr4A.!!$F1 1416
3 TraesCS4B01G179700 chr4A 615019533 615020546 1013 False 1735.0 1735 97.53700 2721 3734 1 chr4A.!!$F2 1013
4 TraesCS4B01G179700 chr4A 157571769 157573407 1638 False 739.5 1140 89.35900 24 1305 2 chr4A.!!$F4 1281
5 TraesCS4B01G179700 chr4D 317180391 317183963 3572 True 1010.4 2124 95.63575 1 2716 4 chr4D.!!$R1 2715
6 TraesCS4B01G179700 chr5B 502375013 502376030 1017 True 1709.0 1709 96.95800 2720 3737 1 chr5B.!!$R3 1017
7 TraesCS4B01G179700 chr5B 442369879 442370423 544 False 767.0 767 92.84400 3215 3734 1 chr5B.!!$F1 519
8 TraesCS4B01G179700 chr5B 144584675 144585226 551 True 760.0 760 92.23800 3060 3587 1 chr5B.!!$R1 527
9 TraesCS4B01G179700 chr2A 683144167 683145181 1014 False 1685.0 1685 96.65000 2721 3734 1 chr2A.!!$F1 1013
10 TraesCS4B01G179700 chr7A 21020168 21021205 1037 False 1485.0 1485 92.89100 2721 3734 1 chr7A.!!$F1 1013
11 TraesCS4B01G179700 chr2B 796434730 796435428 698 False 981.0 981 92.58200 3060 3734 1 chr2B.!!$F1 674
12 TraesCS4B01G179700 chr3B 183198725 183199425 700 True 979.0 979 92.47200 3060 3737 1 chr3B.!!$R1 677
13 TraesCS4B01G179700 chr1B 189133129 189133827 698 False 959.0 959 92.01100 3060 3734 1 chr1B.!!$F1 674
14 TraesCS4B01G179700 chr7B 171137289 171137933 644 True 944.0 944 93.17800 3097 3737 1 chr7B.!!$R1 640
15 TraesCS4B01G179700 chr7B 707722963 707723510 547 True 767.0 767 92.70100 3215 3737 1 chr7B.!!$R2 522
16 TraesCS4B01G179700 chr1A 492133015 492133561 546 True 761.0 761 92.51800 3215 3737 1 chr1A.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 638 0.324738 TTGGCACCACAAGGACCAAA 60.325 50.0 10.01 0.0 45.28 3.28 F
381 1146 0.451783 CAAAGTGGCCGGAGCATTAC 59.548 55.0 5.05 0.0 42.56 1.89 F
2223 3415 0.251653 AGGAGACAACGCCTGAGGTA 60.252 55.0 0.00 0.0 44.29 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1889 0.036732 TCCTGTGCTCAGCCGATTTT 59.963 50.0 10.32 0.00 40.09 1.82 R
2309 3506 0.458669 CTGCAAGCAACATCCATCCC 59.541 55.0 0.00 0.00 0.00 3.85 R
3768 5021 0.108377 TGACGTGGCATGATTAGCGT 60.108 50.0 14.82 5.09 35.20 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.909644 CTTCTGTACTGTACTGTACTGTTTTAT 57.090 33.333 30.96 11.33 42.22 1.40
37 38 9.903682 TTCTGTACTGTACTGTACTGTTTTATC 57.096 33.333 30.96 16.52 42.22 1.75
254 638 0.324738 TTGGCACCACAAGGACCAAA 60.325 50.000 10.01 0.00 45.28 3.28
288 698 2.227865 GACCAATAAACTGCGAGCCAAA 59.772 45.455 0.00 0.00 0.00 3.28
313 1078 5.394663 CCATCTACTCTAGTTGGGTGAACAG 60.395 48.000 0.00 0.00 40.42 3.16
319 1084 1.213296 AGTTGGGTGAACAGACAGGT 58.787 50.000 0.00 0.00 36.98 4.00
332 1097 3.181463 ACAGACAGGTTGTTTTACCGCTA 60.181 43.478 0.00 0.00 43.21 4.26
381 1146 0.451783 CAAAGTGGCCGGAGCATTAC 59.548 55.000 5.05 0.00 42.56 1.89
474 1239 1.078918 CGTCATCTGGCTTGGAGCA 60.079 57.895 2.04 0.00 44.75 4.26
509 1274 9.874205 TGAGAAAAGTTCATGAAATTCAAAAGT 57.126 25.926 20.35 2.25 0.00 2.66
516 1281 8.034215 AGTTCATGAAATTCAAAAGTGTTCACA 58.966 29.630 10.35 0.00 31.45 3.58
527 1294 9.434420 TTCAAAAGTGTTCACAAATTGAGAAAT 57.566 25.926 7.39 0.00 34.94 2.17
528 1295 9.434420 TCAAAAGTGTTCACAAATTGAGAAATT 57.566 25.926 7.39 1.69 34.94 1.82
670 1451 6.198966 GCTCATTTGAAACAGTTCACGAATTT 59.801 34.615 0.00 0.00 43.52 1.82
817 1599 6.222389 TCCATTAGAACAAATGTTTGCCAAG 58.778 36.000 5.44 0.00 41.79 3.61
1047 1829 3.217599 GGAAGCTTCCAAAATCGGAAC 57.782 47.619 35.71 7.81 46.76 3.62
1065 1847 1.299850 CAGCACCGACGTCTTGTGA 60.300 57.895 28.55 0.00 31.66 3.58
1107 1889 9.209175 GAATGCTAACAAGAAGAGAAAAGAGTA 57.791 33.333 0.00 0.00 0.00 2.59
1140 1922 1.214062 CAGGACGGAGAGAGTGTGC 59.786 63.158 0.00 0.00 0.00 4.57
1146 1928 1.078848 GGAGAGAGTGTGCGCCAAT 60.079 57.895 4.18 0.80 0.00 3.16
1153 1935 0.311790 AGTGTGCGCCAATTGACAAG 59.688 50.000 7.12 0.00 0.00 3.16
1156 1938 1.612950 TGTGCGCCAATTGACAAGAAT 59.387 42.857 7.12 0.00 0.00 2.40
1162 1944 4.782195 GCGCCAATTGACAAGAATAGTACG 60.782 45.833 7.12 0.00 0.00 3.67
1171 1953 7.692460 TGACAAGAATAGTACGGTAAGAAGA 57.308 36.000 0.00 0.00 0.00 2.87
1191 1973 2.401583 ATCACGTGGCTAATCTGCAA 57.598 45.000 17.00 0.00 34.04 4.08
1225 2007 3.054948 TGAACCCGGGGATAAACAGTAAG 60.055 47.826 27.92 0.00 0.00 2.34
1231 2016 4.049186 CGGGGATAAACAGTAAGATCACG 58.951 47.826 0.00 0.00 0.00 4.35
1285 2071 2.522185 ACATGCAAGATGCTCCTGTTT 58.478 42.857 0.00 0.00 45.31 2.83
1286 2072 2.490903 ACATGCAAGATGCTCCTGTTTC 59.509 45.455 0.00 0.00 45.31 2.78
1307 2093 2.988493 CTGATGTCCGTGCAAAAATTGG 59.012 45.455 0.00 0.00 0.00 3.16
1329 2115 5.815740 TGGTGAAATTTAGTATTCGAGGAGC 59.184 40.000 0.00 0.00 0.00 4.70
1377 2164 5.240891 TGTTCAAACACCTCAAAATTTGCA 58.759 33.333 0.00 0.00 33.17 4.08
1382 2169 2.952978 ACACCTCAAAATTTGCACGGTA 59.047 40.909 11.65 0.00 0.00 4.02
1388 2175 4.222886 TCAAAATTTGCACGGTAATCACG 58.777 39.130 0.00 0.00 37.36 4.35
1499 2684 3.483196 CACCAAATTGAATTATCGCGCTG 59.517 43.478 5.56 0.00 0.00 5.18
1525 2710 4.081309 AGCGCTAAATAGGAACCTGTAACA 60.081 41.667 8.99 0.00 0.00 2.41
1533 2719 8.575649 AAATAGGAACCTGTAACATTTACCAG 57.424 34.615 3.36 0.00 0.00 4.00
1543 2729 7.444183 CCTGTAACATTTACCAGAGAGAAAACA 59.556 37.037 0.00 0.00 0.00 2.83
1716 2908 3.447742 GAATCATCAAATTCAACCCGCC 58.552 45.455 0.00 0.00 36.00 6.13
1742 2934 1.148498 CCTAGGCGACCCCAATTCC 59.852 63.158 0.00 0.00 35.39 3.01
1744 2936 1.682451 CTAGGCGACCCCAATTCCGA 61.682 60.000 0.00 0.00 35.39 4.55
1858 3050 1.174078 TGACCTACGAACTGACGCCA 61.174 55.000 0.00 0.00 36.70 5.69
1860 3052 1.153823 CCTACGAACTGACGCCAGG 60.154 63.158 3.10 0.00 44.60 4.45
2223 3415 0.251653 AGGAGACAACGCCTGAGGTA 60.252 55.000 0.00 0.00 44.29 3.08
2307 3504 3.005897 ACAGTGTGATCTTACAGCGTTCT 59.994 43.478 0.00 0.00 0.00 3.01
2309 3506 3.990469 AGTGTGATCTTACAGCGTTCTTG 59.010 43.478 0.00 0.00 0.00 3.02
2389 3586 1.870055 GAACTACGGCGGGAGTGTGA 61.870 60.000 10.32 0.00 0.00 3.58
2394 3591 2.430367 GGCGGGAGTGTGAAGGTT 59.570 61.111 0.00 0.00 0.00 3.50
2451 3648 2.764128 GGCCCAGAGTCCATCGGA 60.764 66.667 0.00 0.00 0.00 4.55
2671 3868 2.127383 GCGCACGCAAACACTACC 60.127 61.111 10.65 0.00 41.49 3.18
2706 3903 9.129532 TGAAATGGAATAATTTTTGCCTTTTGT 57.870 25.926 0.00 0.00 29.89 2.83
2716 3914 4.576216 TTTGCCTTTTGTTATGCGAGAA 57.424 36.364 0.00 0.00 0.00 2.87
2717 3915 4.782019 TTGCCTTTTGTTATGCGAGAAT 57.218 36.364 0.00 0.00 0.00 2.40
2718 3916 5.888691 TTGCCTTTTGTTATGCGAGAATA 57.111 34.783 0.00 0.00 0.00 1.75
2760 3958 1.909781 TTGGTAGTCTCCGCCGGTT 60.910 57.895 1.63 0.00 0.00 4.44
2788 3986 2.424302 CCACCACTTTCGTCCGGT 59.576 61.111 0.00 0.00 0.00 5.28
2957 4157 6.945636 ATCAACCGATACCTCCCATTATTA 57.054 37.500 0.00 0.00 0.00 0.98
2965 4165 8.856103 CCGATACCTCCCATTATTACAAATTTT 58.144 33.333 0.00 0.00 0.00 1.82
3423 4626 1.972223 CCTCCTCTCACGTCACGGT 60.972 63.158 0.35 0.00 0.00 4.83
3468 4721 3.203412 CTACTCTCTCGCCGCCGT 61.203 66.667 0.00 0.00 35.54 5.68
3683 4936 0.702902 AGGGAGGGACTACTTCGTCA 59.297 55.000 0.00 0.00 40.83 4.35
3734 4987 1.228429 CCCGGTTGTGAACATGGGT 60.228 57.895 0.00 0.00 41.29 4.51
3737 4990 0.310543 CGGTTGTGAACATGGGTGTG 59.689 55.000 0.00 0.00 38.92 3.82
3738 4991 1.686355 GGTTGTGAACATGGGTGTGA 58.314 50.000 0.00 0.00 38.92 3.58
3739 4992 1.336755 GGTTGTGAACATGGGTGTGAC 59.663 52.381 0.00 0.00 38.92 3.67
3740 4993 1.002900 GTTGTGAACATGGGTGTGACG 60.003 52.381 0.00 0.00 38.92 4.35
3741 4994 1.163420 TGTGAACATGGGTGTGACGC 61.163 55.000 0.00 0.00 38.92 5.19
3742 4995 1.599518 TGAACATGGGTGTGACGCC 60.600 57.895 6.63 6.63 38.92 5.68
3748 5001 3.463585 GGGTGTGACGCCCGGATA 61.464 66.667 19.73 0.00 44.71 2.59
3749 5002 2.580276 GGTGTGACGCCCGGATAA 59.420 61.111 0.73 0.00 0.00 1.75
3750 5003 1.145377 GGTGTGACGCCCGGATAAT 59.855 57.895 0.73 0.00 0.00 1.28
3751 5004 0.878961 GGTGTGACGCCCGGATAATC 60.879 60.000 0.73 0.00 0.00 1.75
3752 5005 0.179094 GTGTGACGCCCGGATAATCA 60.179 55.000 0.73 0.00 0.00 2.57
3753 5006 0.756294 TGTGACGCCCGGATAATCAT 59.244 50.000 0.73 0.00 0.00 2.45
3754 5007 1.140052 TGTGACGCCCGGATAATCATT 59.860 47.619 0.73 0.00 0.00 2.57
3755 5008 1.798813 GTGACGCCCGGATAATCATTC 59.201 52.381 0.73 0.00 0.00 2.67
3756 5009 1.691976 TGACGCCCGGATAATCATTCT 59.308 47.619 0.73 0.00 0.00 2.40
3757 5010 2.894765 TGACGCCCGGATAATCATTCTA 59.105 45.455 0.73 0.00 0.00 2.10
3758 5011 3.251571 GACGCCCGGATAATCATTCTAC 58.748 50.000 0.73 0.00 0.00 2.59
3759 5012 2.631062 ACGCCCGGATAATCATTCTACA 59.369 45.455 0.73 0.00 0.00 2.74
3760 5013 3.254060 CGCCCGGATAATCATTCTACAG 58.746 50.000 0.73 0.00 0.00 2.74
3761 5014 3.306088 CGCCCGGATAATCATTCTACAGT 60.306 47.826 0.73 0.00 0.00 3.55
3762 5015 4.082408 CGCCCGGATAATCATTCTACAGTA 60.082 45.833 0.73 0.00 0.00 2.74
3763 5016 5.566032 CGCCCGGATAATCATTCTACAGTAA 60.566 44.000 0.73 0.00 0.00 2.24
3764 5017 5.638234 GCCCGGATAATCATTCTACAGTAAC 59.362 44.000 0.73 0.00 0.00 2.50
3765 5018 6.164176 CCCGGATAATCATTCTACAGTAACC 58.836 44.000 0.73 0.00 0.00 2.85
3766 5019 6.164176 CCGGATAATCATTCTACAGTAACCC 58.836 44.000 0.00 0.00 0.00 4.11
3767 5020 6.164176 CGGATAATCATTCTACAGTAACCCC 58.836 44.000 0.00 0.00 0.00 4.95
3768 5021 6.239487 CGGATAATCATTCTACAGTAACCCCA 60.239 42.308 0.00 0.00 0.00 4.96
3769 5022 6.935208 GGATAATCATTCTACAGTAACCCCAC 59.065 42.308 0.00 0.00 0.00 4.61
3770 5023 3.880047 TCATTCTACAGTAACCCCACG 57.120 47.619 0.00 0.00 0.00 4.94
3771 5024 2.093869 TCATTCTACAGTAACCCCACGC 60.094 50.000 0.00 0.00 0.00 5.34
3772 5025 1.636148 TTCTACAGTAACCCCACGCT 58.364 50.000 0.00 0.00 0.00 5.07
3773 5026 2.512692 TCTACAGTAACCCCACGCTA 57.487 50.000 0.00 0.00 0.00 4.26
3774 5027 2.806434 TCTACAGTAACCCCACGCTAA 58.194 47.619 0.00 0.00 0.00 3.09
3775 5028 3.368248 TCTACAGTAACCCCACGCTAAT 58.632 45.455 0.00 0.00 0.00 1.73
3776 5029 2.685850 ACAGTAACCCCACGCTAATC 57.314 50.000 0.00 0.00 0.00 1.75
3777 5030 1.903860 ACAGTAACCCCACGCTAATCA 59.096 47.619 0.00 0.00 0.00 2.57
3778 5031 2.504175 ACAGTAACCCCACGCTAATCAT 59.496 45.455 0.00 0.00 0.00 2.45
3779 5032 2.872245 CAGTAACCCCACGCTAATCATG 59.128 50.000 0.00 0.00 0.00 3.07
3780 5033 1.602377 GTAACCCCACGCTAATCATGC 59.398 52.381 0.00 0.00 0.00 4.06
3781 5034 0.751643 AACCCCACGCTAATCATGCC 60.752 55.000 0.00 0.00 0.00 4.40
3782 5035 1.152984 CCCCACGCTAATCATGCCA 60.153 57.895 0.00 0.00 0.00 4.92
3783 5036 1.447317 CCCCACGCTAATCATGCCAC 61.447 60.000 0.00 0.00 0.00 5.01
3784 5037 1.643292 CCACGCTAATCATGCCACG 59.357 57.895 0.00 0.00 0.00 4.94
3785 5038 1.089481 CCACGCTAATCATGCCACGT 61.089 55.000 0.00 0.00 0.00 4.49
3786 5039 0.301687 CACGCTAATCATGCCACGTC 59.698 55.000 0.00 0.00 0.00 4.34
3787 5040 0.108377 ACGCTAATCATGCCACGTCA 60.108 50.000 0.00 0.00 0.00 4.35
3788 5041 0.301687 CGCTAATCATGCCACGTCAC 59.698 55.000 0.00 0.00 0.00 3.67
3789 5042 0.657840 GCTAATCATGCCACGTCACC 59.342 55.000 0.00 0.00 0.00 4.02
3790 5043 1.743772 GCTAATCATGCCACGTCACCT 60.744 52.381 0.00 0.00 0.00 4.00
3791 5044 2.205074 CTAATCATGCCACGTCACCTC 58.795 52.381 0.00 0.00 0.00 3.85
3792 5045 0.740868 AATCATGCCACGTCACCTCG 60.741 55.000 0.00 0.00 0.00 4.63
3793 5046 2.578163 ATCATGCCACGTCACCTCGG 62.578 60.000 0.00 0.00 34.94 4.63
3794 5047 3.311110 ATGCCACGTCACCTCGGT 61.311 61.111 0.00 0.00 34.94 4.69
3795 5048 2.879233 ATGCCACGTCACCTCGGTT 61.879 57.895 0.00 0.00 34.94 4.44
3796 5049 1.537814 ATGCCACGTCACCTCGGTTA 61.538 55.000 0.00 0.00 34.94 2.85
3797 5050 1.735559 GCCACGTCACCTCGGTTAC 60.736 63.158 0.00 0.00 34.94 2.50
3798 5051 1.080298 CCACGTCACCTCGGTTACC 60.080 63.158 0.00 0.00 34.94 2.85
3809 5062 3.520187 CGGTTACCGTTGCTAACCT 57.480 52.632 16.53 0.00 42.73 3.50
3810 5063 1.353076 CGGTTACCGTTGCTAACCTC 58.647 55.000 16.53 0.00 42.73 3.85
3811 5064 1.067354 CGGTTACCGTTGCTAACCTCT 60.067 52.381 16.53 0.00 42.73 3.69
3812 5065 2.611224 CGGTTACCGTTGCTAACCTCTT 60.611 50.000 16.53 0.00 42.73 2.85
3813 5066 3.367292 CGGTTACCGTTGCTAACCTCTTA 60.367 47.826 16.53 0.00 42.73 2.10
3814 5067 4.568956 GGTTACCGTTGCTAACCTCTTAA 58.431 43.478 4.92 0.00 40.03 1.85
3815 5068 5.181009 GGTTACCGTTGCTAACCTCTTAAT 58.819 41.667 4.92 0.00 40.03 1.40
3816 5069 5.064325 GGTTACCGTTGCTAACCTCTTAATG 59.936 44.000 4.92 0.00 40.03 1.90
3817 5070 4.546829 ACCGTTGCTAACCTCTTAATGA 57.453 40.909 0.00 0.00 0.00 2.57
3818 5071 5.099042 ACCGTTGCTAACCTCTTAATGAT 57.901 39.130 0.00 0.00 0.00 2.45
3819 5072 5.497474 ACCGTTGCTAACCTCTTAATGATT 58.503 37.500 0.00 0.00 0.00 2.57
3820 5073 5.585047 ACCGTTGCTAACCTCTTAATGATTC 59.415 40.000 0.00 0.00 0.00 2.52
3821 5074 5.276868 CCGTTGCTAACCTCTTAATGATTCG 60.277 44.000 0.00 0.00 0.00 3.34
3822 5075 5.518847 CGTTGCTAACCTCTTAATGATTCGA 59.481 40.000 0.00 0.00 0.00 3.71
3823 5076 6.035650 CGTTGCTAACCTCTTAATGATTCGAA 59.964 38.462 0.00 0.00 0.00 3.71
3824 5077 7.412563 CGTTGCTAACCTCTTAATGATTCGAAA 60.413 37.037 0.00 0.00 0.00 3.46
3825 5078 7.303634 TGCTAACCTCTTAATGATTCGAAAC 57.696 36.000 0.00 0.00 0.00 2.78
3826 5079 6.315393 TGCTAACCTCTTAATGATTCGAAACC 59.685 38.462 0.00 0.00 0.00 3.27
3827 5080 5.796350 AACCTCTTAATGATTCGAAACCG 57.204 39.130 0.00 0.00 0.00 4.44
3828 5081 4.828829 ACCTCTTAATGATTCGAAACCGT 58.171 39.130 0.00 0.00 0.00 4.83
3829 5082 5.243207 ACCTCTTAATGATTCGAAACCGTT 58.757 37.500 0.00 7.69 0.00 4.44
3830 5083 5.704053 ACCTCTTAATGATTCGAAACCGTTT 59.296 36.000 0.00 0.00 0.00 3.60
3831 5084 6.206048 ACCTCTTAATGATTCGAAACCGTTTT 59.794 34.615 0.00 0.00 0.00 2.43
3832 5085 6.523201 CCTCTTAATGATTCGAAACCGTTTTG 59.477 38.462 0.00 5.01 0.00 2.44
3833 5086 7.192148 TCTTAATGATTCGAAACCGTTTTGA 57.808 32.000 9.53 9.53 0.00 2.69
3834 5087 7.640852 TCTTAATGATTCGAAACCGTTTTGAA 58.359 30.769 23.09 23.09 44.68 2.69
3835 5088 8.129840 TCTTAATGATTCGAAACCGTTTTGAAA 58.870 29.630 24.16 13.38 44.00 2.69
3836 5089 8.804688 TTAATGATTCGAAACCGTTTTGAAAT 57.195 26.923 24.16 14.71 44.00 2.17
3837 5090 7.707774 AATGATTCGAAACCGTTTTGAAATT 57.292 28.000 24.16 18.41 44.00 1.82
3838 5091 7.707774 ATGATTCGAAACCGTTTTGAAATTT 57.292 28.000 24.16 12.54 44.00 1.82
3839 5092 8.804688 ATGATTCGAAACCGTTTTGAAATTTA 57.195 26.923 24.16 14.12 44.00 1.40
3840 5093 8.630278 TGATTCGAAACCGTTTTGAAATTTAA 57.370 26.923 24.16 7.03 44.00 1.52
3841 5094 9.084164 TGATTCGAAACCGTTTTGAAATTTAAA 57.916 25.926 24.16 6.43 44.00 1.52
3844 5097 9.903185 TTCGAAACCGTTTTGAAATTTAAATTC 57.097 25.926 20.02 8.26 39.46 2.17
3845 5098 9.303537 TCGAAACCGTTTTGAAATTTAAATTCT 57.696 25.926 13.68 4.88 30.26 2.40
3876 5129 9.965748 ATGTCAAATAACAAACGTTTTCAAAAG 57.034 25.926 11.66 1.24 31.81 2.27
3877 5130 8.979574 TGTCAAATAACAAACGTTTTCAAAAGT 58.020 25.926 11.66 1.94 32.00 2.66
3878 5131 9.800299 GTCAAATAACAAACGTTTTCAAAAGTT 57.200 25.926 11.66 13.26 41.24 2.66
3879 5132 9.798885 TCAAATAACAAACGTTTTCAAAAGTTG 57.201 25.926 11.66 10.70 39.80 3.16
3880 5133 9.798885 CAAATAACAAACGTTTTCAAAAGTTGA 57.201 25.926 11.66 2.05 39.80 3.18
3901 5154 2.880963 ACAAAATTGTTCGGTGGGTG 57.119 45.000 0.00 0.00 38.47 4.61
3902 5155 1.202475 ACAAAATTGTTCGGTGGGTGC 60.202 47.619 0.00 0.00 38.47 5.01
3903 5156 0.391228 AAAATTGTTCGGTGGGTGCC 59.609 50.000 0.00 0.00 0.00 5.01
3913 5166 2.335316 GGTGGGTGCCGAATATTACA 57.665 50.000 0.00 0.00 0.00 2.41
3914 5167 2.645802 GGTGGGTGCCGAATATTACAA 58.354 47.619 0.00 0.00 0.00 2.41
3915 5168 2.616842 GGTGGGTGCCGAATATTACAAG 59.383 50.000 0.00 0.00 0.00 3.16
3916 5169 2.616842 GTGGGTGCCGAATATTACAAGG 59.383 50.000 0.00 0.00 0.00 3.61
3917 5170 2.227194 GGGTGCCGAATATTACAAGGG 58.773 52.381 0.00 0.00 0.00 3.95
3918 5171 2.422377 GGGTGCCGAATATTACAAGGGT 60.422 50.000 0.00 0.00 0.00 4.34
3919 5172 3.181452 GGGTGCCGAATATTACAAGGGTA 60.181 47.826 0.00 0.00 0.00 3.69
3920 5173 4.453751 GGTGCCGAATATTACAAGGGTAA 58.546 43.478 0.00 0.00 43.25 2.85
3922 5175 5.533528 GGTGCCGAATATTACAAGGGTAATT 59.466 40.000 5.52 0.00 45.62 1.40
3923 5176 6.711645 GGTGCCGAATATTACAAGGGTAATTA 59.288 38.462 5.52 0.00 45.62 1.40
3924 5177 7.392393 GGTGCCGAATATTACAAGGGTAATTAT 59.608 37.037 5.52 0.00 45.62 1.28
3925 5178 9.439500 GTGCCGAATATTACAAGGGTAATTATA 57.561 33.333 5.52 0.00 45.62 0.98
3956 5209 9.533253 AGAAAACATATTTTTGGAAAGTGTCTG 57.467 29.630 0.00 0.00 38.17 3.51
3957 5210 9.528018 GAAAACATATTTTTGGAAAGTGTCTGA 57.472 29.630 0.00 0.00 38.17 3.27
3958 5211 9.883142 AAAACATATTTTTGGAAAGTGTCTGAA 57.117 25.926 0.00 0.00 34.19 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.025699 TCTTAAAATCCCTTCCACCGGG 60.026 50.000 6.32 0.00 43.38 5.73
254 638 7.309194 GCAGTTTATTGGTCAAATTAGGTGAGT 60.309 37.037 0.00 0.00 0.00 3.41
288 698 4.332683 TCACCCAACTAGAGTAGATGGT 57.667 45.455 0.00 0.59 44.60 3.55
313 1078 4.530388 GTTTAGCGGTAAAACAACCTGTC 58.470 43.478 20.44 2.54 37.39 3.51
332 1097 0.899717 ATCCATGCAACAGCCCGTTT 60.900 50.000 0.00 0.00 34.86 3.60
461 1226 1.499913 TTCCCATGCTCCAAGCCAGA 61.500 55.000 0.00 0.00 41.51 3.86
463 1228 0.041535 AATTCCCATGCTCCAAGCCA 59.958 50.000 0.00 0.00 41.51 4.75
474 1239 7.543359 TCATGAACTTTTCTCAAATTCCCAT 57.457 32.000 0.00 0.00 0.00 4.00
639 1420 7.023575 GTGAACTGTTTCAAATGAGCGAATAT 58.976 34.615 0.00 0.00 43.52 1.28
647 1428 9.574458 TTTAAATTCGTGAACTGTTTCAAATGA 57.426 25.926 0.00 0.00 43.52 2.57
677 1458 3.295093 TGGACCTCTTTTCAAATGCACA 58.705 40.909 0.00 0.00 0.00 4.57
678 1459 4.022068 TCATGGACCTCTTTTCAAATGCAC 60.022 41.667 0.00 0.00 0.00 4.57
759 1541 8.904099 TTCCAAAGGTGTAAACTTTTTCAAAA 57.096 26.923 0.00 0.00 36.09 2.44
997 1779 7.721399 TGCTTCCCAAATTGGCTTTTATTTTTA 59.279 29.630 6.48 0.00 35.79 1.52
1008 1790 1.134610 CCAGATGCTTCCCAAATTGGC 60.135 52.381 6.48 0.00 35.79 4.52
1047 1829 1.278172 CTCACAAGACGTCGGTGCTG 61.278 60.000 27.80 21.09 32.69 4.41
1090 1872 7.018235 GCCGATTTTACTCTTTTCTCTTCTTG 58.982 38.462 0.00 0.00 0.00 3.02
1107 1889 0.036732 TCCTGTGCTCAGCCGATTTT 59.963 50.000 10.32 0.00 40.09 1.82
1140 1922 4.260212 CCGTACTATTCTTGTCAATTGGCG 60.260 45.833 5.42 0.00 0.00 5.69
1146 1928 8.114331 TCTTCTTACCGTACTATTCTTGTCAA 57.886 34.615 0.00 0.00 0.00 3.18
1153 1935 7.165483 CACGTGATTCTTCTTACCGTACTATTC 59.835 40.741 10.90 0.00 0.00 1.75
1156 1938 5.163723 CCACGTGATTCTTCTTACCGTACTA 60.164 44.000 19.30 0.00 0.00 1.82
1162 1944 2.973945 AGCCACGTGATTCTTCTTACC 58.026 47.619 19.30 0.00 0.00 2.85
1171 1953 2.401583 TGCAGATTAGCCACGTGATT 57.598 45.000 19.30 7.08 0.00 2.57
1191 1973 4.415783 GGTTCATTTGAGCCCGGT 57.584 55.556 0.00 0.00 39.22 5.28
1285 2071 3.305267 CCAATTTTTGCACGGACATCAGA 60.305 43.478 0.00 0.00 0.00 3.27
1286 2072 2.988493 CCAATTTTTGCACGGACATCAG 59.012 45.455 0.00 0.00 0.00 2.90
1307 2093 7.167831 GAGCTCCTCGAATACTAAATTTCAC 57.832 40.000 0.87 0.00 0.00 3.18
1329 2115 5.974300 TCGATTGTCTTTTTCTTTCACGAG 58.026 37.500 0.00 0.00 0.00 4.18
1336 2122 8.807581 GTTTGAACATTCGATTGTCTTTTTCTT 58.192 29.630 12.96 0.00 0.00 2.52
1338 2124 8.050170 GTGTTTGAACATTCGATTGTCTTTTTC 58.950 33.333 12.96 7.56 41.59 2.29
1377 2164 1.396996 GCTCAAATGCGTGATTACCGT 59.603 47.619 0.00 0.00 0.00 4.83
1382 2169 4.877823 TCTAAGATGCTCAAATGCGTGATT 59.122 37.500 0.00 0.00 35.36 2.57
1388 2175 5.746307 TGTCATCTAAGATGCTCAAATGC 57.254 39.130 0.00 0.00 0.00 3.56
1473 2658 3.371168 CGATAATTCAATTTGGTGCCCG 58.629 45.455 0.00 0.00 0.00 6.13
1499 2684 4.439968 ACAGGTTCCTATTTAGCGCTTAC 58.560 43.478 18.68 1.26 0.00 2.34
1525 2710 9.847224 TTTTACTCTGTTTTCTCTCTGGTAAAT 57.153 29.630 0.00 0.00 0.00 1.40
1543 2729 6.553100 CCAGACTCCAGGAGATATTTTACTCT 59.447 42.308 24.45 8.94 33.32 3.24
1716 2908 4.208686 GTCGCCTAGGGAGCACGG 62.209 72.222 11.72 0.00 0.00 4.94
1839 3031 1.174078 TGGCGTCAGTTCGTAGGTCA 61.174 55.000 0.00 0.00 0.00 4.02
1858 3050 3.314388 GACGCGGTCGACGTTACCT 62.314 63.158 12.47 1.31 45.24 3.08
1860 3052 2.871540 GGACGCGGTCGACGTTAC 60.872 66.667 12.47 0.00 45.24 2.50
2097 3289 1.226046 CATCGTCGTCGTCGAGCTT 60.226 57.895 18.55 1.14 46.96 3.74
2211 3403 1.324005 GCTCCTCTACCTCAGGCGTT 61.324 60.000 0.00 0.00 0.00 4.84
2223 3415 3.325753 GGTGGTGGCAGCTCCTCT 61.326 66.667 25.84 0.00 35.26 3.69
2307 3504 0.896923 GCAAGCAACATCCATCCCAA 59.103 50.000 0.00 0.00 0.00 4.12
2309 3506 0.458669 CTGCAAGCAACATCCATCCC 59.541 55.000 0.00 0.00 0.00 3.85
2389 3586 2.317230 CGTCAACGGCAAGAACCTT 58.683 52.632 0.00 0.00 35.37 3.50
2451 3648 1.073897 GGCTGCCTTCACTCCACTT 59.926 57.895 12.43 0.00 0.00 3.16
2548 3745 1.131126 CGCCATTTTACTGCACTGGAG 59.869 52.381 0.00 0.00 0.00 3.86
2549 3746 1.164411 CGCCATTTTACTGCACTGGA 58.836 50.000 0.00 0.00 0.00 3.86
2579 3776 3.982701 TCGAAACAAAATCTTGCTGCATG 59.017 39.130 1.84 6.12 35.84 4.06
2614 3811 3.521524 ACGAAACATCGAAACTCTTGC 57.478 42.857 5.11 0.00 36.85 4.01
2760 3958 3.499157 CGAAAGTGGTGGGACGAAAATTA 59.501 43.478 0.00 0.00 0.00 1.40
2828 4027 7.527568 AATAAACCGGTGAATAAGAAACCAA 57.472 32.000 8.52 0.00 33.30 3.67
3183 4384 5.795972 AGGCAGTAGAGATGATTGATGATG 58.204 41.667 0.00 0.00 0.00 3.07
3256 4458 1.380785 AACGAGGGCGGATGTAGGA 60.381 57.895 0.00 0.00 43.17 2.94
3468 4721 4.444838 CGGGATTGGTGGCGACGA 62.445 66.667 0.00 0.00 0.00 4.20
3683 4936 3.376935 CTGCCTCGCCGACCTTGAT 62.377 63.158 0.00 0.00 0.00 2.57
3734 4987 0.756294 ATGATTATCCGGGCGTCACA 59.244 50.000 0.00 0.00 0.00 3.58
3737 4990 2.457366 AGAATGATTATCCGGGCGTC 57.543 50.000 0.00 0.00 0.00 5.19
3738 4991 2.631062 TGTAGAATGATTATCCGGGCGT 59.369 45.455 0.00 0.00 0.00 5.68
3739 4992 3.254060 CTGTAGAATGATTATCCGGGCG 58.746 50.000 0.00 0.00 0.00 6.13
3740 4993 4.273148 ACTGTAGAATGATTATCCGGGC 57.727 45.455 0.00 0.00 0.00 6.13
3741 4994 6.164176 GGTTACTGTAGAATGATTATCCGGG 58.836 44.000 0.00 0.00 0.00 5.73
3742 4995 6.164176 GGGTTACTGTAGAATGATTATCCGG 58.836 44.000 0.00 0.00 0.00 5.14
3743 4996 6.164176 GGGGTTACTGTAGAATGATTATCCG 58.836 44.000 0.00 0.00 0.00 4.18
3744 4997 6.935208 GTGGGGTTACTGTAGAATGATTATCC 59.065 42.308 0.00 0.00 0.00 2.59
3745 4998 6.645415 CGTGGGGTTACTGTAGAATGATTATC 59.355 42.308 0.00 0.00 0.00 1.75
3746 4999 6.522054 CGTGGGGTTACTGTAGAATGATTAT 58.478 40.000 0.00 0.00 0.00 1.28
3747 5000 5.682990 GCGTGGGGTTACTGTAGAATGATTA 60.683 44.000 0.00 0.00 0.00 1.75
3748 5001 4.766375 CGTGGGGTTACTGTAGAATGATT 58.234 43.478 0.00 0.00 0.00 2.57
3749 5002 3.431766 GCGTGGGGTTACTGTAGAATGAT 60.432 47.826 0.00 0.00 0.00 2.45
3750 5003 2.093869 GCGTGGGGTTACTGTAGAATGA 60.094 50.000 0.00 0.00 0.00 2.57
3751 5004 2.093658 AGCGTGGGGTTACTGTAGAATG 60.094 50.000 0.00 0.00 0.00 2.67
3752 5005 2.185387 AGCGTGGGGTTACTGTAGAAT 58.815 47.619 0.00 0.00 0.00 2.40
3753 5006 1.636148 AGCGTGGGGTTACTGTAGAA 58.364 50.000 0.00 0.00 0.00 2.10
3754 5007 2.512692 TAGCGTGGGGTTACTGTAGA 57.487 50.000 0.00 0.00 0.00 2.59
3755 5008 3.131577 TGATTAGCGTGGGGTTACTGTAG 59.868 47.826 0.00 0.00 0.00 2.74
3756 5009 3.098377 TGATTAGCGTGGGGTTACTGTA 58.902 45.455 0.00 0.00 0.00 2.74
3757 5010 1.903860 TGATTAGCGTGGGGTTACTGT 59.096 47.619 0.00 0.00 0.00 3.55
3758 5011 2.684001 TGATTAGCGTGGGGTTACTG 57.316 50.000 0.00 0.00 0.00 2.74
3759 5012 2.745152 GCATGATTAGCGTGGGGTTACT 60.745 50.000 0.00 0.00 33.98 2.24
3760 5013 1.602377 GCATGATTAGCGTGGGGTTAC 59.398 52.381 0.00 0.00 33.98 2.50
3761 5014 1.476110 GGCATGATTAGCGTGGGGTTA 60.476 52.381 0.00 0.00 33.98 2.85
3762 5015 0.751643 GGCATGATTAGCGTGGGGTT 60.752 55.000 0.00 0.00 33.98 4.11
3763 5016 1.152963 GGCATGATTAGCGTGGGGT 60.153 57.895 0.00 0.00 33.98 4.95
3764 5017 1.152984 TGGCATGATTAGCGTGGGG 60.153 57.895 0.00 0.00 33.98 4.96
3765 5018 1.775039 CGTGGCATGATTAGCGTGGG 61.775 60.000 0.00 0.00 33.98 4.61
3766 5019 1.089481 ACGTGGCATGATTAGCGTGG 61.089 55.000 14.82 0.00 33.98 4.94
3767 5020 0.301687 GACGTGGCATGATTAGCGTG 59.698 55.000 14.82 0.00 36.56 5.34
3768 5021 0.108377 TGACGTGGCATGATTAGCGT 60.108 50.000 14.82 5.09 35.20 5.07
3769 5022 0.301687 GTGACGTGGCATGATTAGCG 59.698 55.000 14.82 1.27 0.00 4.26
3770 5023 0.657840 GGTGACGTGGCATGATTAGC 59.342 55.000 14.82 5.02 0.00 3.09
3771 5024 2.205074 GAGGTGACGTGGCATGATTAG 58.795 52.381 14.82 0.00 0.00 1.73
3772 5025 1.470805 CGAGGTGACGTGGCATGATTA 60.471 52.381 14.82 0.00 0.00 1.75
3773 5026 0.740868 CGAGGTGACGTGGCATGATT 60.741 55.000 14.82 0.00 0.00 2.57
3774 5027 1.153568 CGAGGTGACGTGGCATGAT 60.154 57.895 14.82 0.00 0.00 2.45
3775 5028 2.261361 CGAGGTGACGTGGCATGA 59.739 61.111 14.82 0.00 0.00 3.07
3776 5029 2.815211 CCGAGGTGACGTGGCATG 60.815 66.667 4.87 4.87 0.00 4.06
3777 5030 1.537814 TAACCGAGGTGACGTGGCAT 61.538 55.000 0.00 0.00 33.35 4.40
3778 5031 2.201708 TAACCGAGGTGACGTGGCA 61.202 57.895 0.00 0.00 33.35 4.92
3779 5032 1.735559 GTAACCGAGGTGACGTGGC 60.736 63.158 0.00 0.00 33.35 5.01
3780 5033 1.080298 GGTAACCGAGGTGACGTGG 60.080 63.158 0.00 0.00 30.24 4.94
3781 5034 4.565531 GGTAACCGAGGTGACGTG 57.434 61.111 0.00 0.00 30.24 4.49
3793 5046 5.870978 TCATTAAGAGGTTAGCAACGGTAAC 59.129 40.000 7.39 7.39 43.20 2.50
3794 5047 6.040209 TCATTAAGAGGTTAGCAACGGTAA 57.960 37.500 0.00 0.00 0.00 2.85
3795 5048 5.664294 TCATTAAGAGGTTAGCAACGGTA 57.336 39.130 0.00 0.00 0.00 4.02
3796 5049 4.546829 TCATTAAGAGGTTAGCAACGGT 57.453 40.909 0.00 0.00 0.00 4.83
3797 5050 5.276868 CGAATCATTAAGAGGTTAGCAACGG 60.277 44.000 0.00 0.00 0.00 4.44
3798 5051 5.518847 TCGAATCATTAAGAGGTTAGCAACG 59.481 40.000 0.00 0.00 0.00 4.10
3799 5052 6.903883 TCGAATCATTAAGAGGTTAGCAAC 57.096 37.500 0.00 0.00 0.00 4.17
3800 5053 7.148306 GGTTTCGAATCATTAAGAGGTTAGCAA 60.148 37.037 0.00 0.00 0.00 3.91
3801 5054 6.315393 GGTTTCGAATCATTAAGAGGTTAGCA 59.685 38.462 0.00 0.00 0.00 3.49
3802 5055 6.509677 CGGTTTCGAATCATTAAGAGGTTAGC 60.510 42.308 0.00 0.00 39.00 3.09
3803 5056 6.534079 ACGGTTTCGAATCATTAAGAGGTTAG 59.466 38.462 0.00 0.00 40.11 2.34
3804 5057 6.400568 ACGGTTTCGAATCATTAAGAGGTTA 58.599 36.000 0.00 0.00 40.11 2.85
3805 5058 5.243207 ACGGTTTCGAATCATTAAGAGGTT 58.757 37.500 0.00 0.00 40.11 3.50
3806 5059 4.828829 ACGGTTTCGAATCATTAAGAGGT 58.171 39.130 0.00 0.00 40.11 3.85
3807 5060 5.796350 AACGGTTTCGAATCATTAAGAGG 57.204 39.130 0.00 0.00 40.11 3.69
3808 5061 7.295201 TCAAAACGGTTTCGAATCATTAAGAG 58.705 34.615 6.57 0.00 40.11 2.85
3809 5062 7.192148 TCAAAACGGTTTCGAATCATTAAGA 57.808 32.000 6.57 0.00 40.11 2.10
3810 5063 7.845617 TTCAAAACGGTTTCGAATCATTAAG 57.154 32.000 6.57 0.00 40.11 1.85
3811 5064 8.804688 ATTTCAAAACGGTTTCGAATCATTAA 57.195 26.923 7.73 0.00 40.11 1.40
3812 5065 8.804688 AATTTCAAAACGGTTTCGAATCATTA 57.195 26.923 7.73 0.00 40.11 1.90
3813 5066 7.707774 AATTTCAAAACGGTTTCGAATCATT 57.292 28.000 7.73 3.74 40.11 2.57
3814 5067 7.707774 AAATTTCAAAACGGTTTCGAATCAT 57.292 28.000 7.73 0.00 40.11 2.45
3815 5068 8.630278 TTAAATTTCAAAACGGTTTCGAATCA 57.370 26.923 7.73 0.00 40.11 2.57
3818 5071 9.903185 GAATTTAAATTTCAAAACGGTTTCGAA 57.097 25.926 14.45 4.65 40.11 3.71
3819 5072 9.303537 AGAATTTAAATTTCAAAACGGTTTCGA 57.696 25.926 14.45 0.00 40.11 3.71
3850 5103 9.965748 CTTTTGAAAACGTTTGTTATTTGACAT 57.034 25.926 15.46 0.00 37.31 3.06
3851 5104 8.979574 ACTTTTGAAAACGTTTGTTATTTGACA 58.020 25.926 15.46 1.94 37.31 3.58
3852 5105 9.800299 AACTTTTGAAAACGTTTGTTATTTGAC 57.200 25.926 15.46 0.00 37.31 3.18
3853 5106 9.798885 CAACTTTTGAAAACGTTTGTTATTTGA 57.201 25.926 15.46 0.00 37.31 2.69
3854 5107 9.798885 TCAACTTTTGAAAACGTTTGTTATTTG 57.201 25.926 15.46 11.81 34.79 2.32
3882 5135 1.202475 GCACCCACCGAACAATTTTGT 60.202 47.619 0.00 0.00 44.72 2.83
3883 5136 1.496934 GCACCCACCGAACAATTTTG 58.503 50.000 0.00 0.00 0.00 2.44
3884 5137 0.391228 GGCACCCACCGAACAATTTT 59.609 50.000 0.00 0.00 0.00 1.82
3885 5138 2.046108 GGCACCCACCGAACAATTT 58.954 52.632 0.00 0.00 0.00 1.82
3886 5139 3.771978 GGCACCCACCGAACAATT 58.228 55.556 0.00 0.00 0.00 2.32
3894 5147 2.335316 TGTAATATTCGGCACCCACC 57.665 50.000 0.00 0.00 0.00 4.61
3895 5148 2.616842 CCTTGTAATATTCGGCACCCAC 59.383 50.000 0.00 0.00 0.00 4.61
3896 5149 2.422235 CCCTTGTAATATTCGGCACCCA 60.422 50.000 0.00 0.00 0.00 4.51
3897 5150 2.227194 CCCTTGTAATATTCGGCACCC 58.773 52.381 0.00 0.00 0.00 4.61
3898 5151 2.927028 ACCCTTGTAATATTCGGCACC 58.073 47.619 0.00 0.00 0.00 5.01
3899 5152 6.628919 AATTACCCTTGTAATATTCGGCAC 57.371 37.500 0.00 0.00 44.89 5.01
3930 5183 9.533253 CAGACACTTTCCAAAAATATGTTTTCT 57.467 29.630 0.25 0.00 36.55 2.52
3931 5184 9.528018 TCAGACACTTTCCAAAAATATGTTTTC 57.472 29.630 0.25 0.00 36.55 2.29
3932 5185 9.883142 TTCAGACACTTTCCAAAAATATGTTTT 57.117 25.926 0.00 0.00 39.15 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.