Multiple sequence alignment - TraesCS4B01G179500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G179500 chr4B 100.000 3460 0 0 1 3460 393404611 393408070 0.000000e+00 6390
1 TraesCS4B01G179500 chr4A 92.438 2473 92 34 694 3108 159295815 159293380 0.000000e+00 3443
2 TraesCS4B01G179500 chr4A 91.036 357 14 8 3106 3446 159293150 159292796 1.880000e-127 466
3 TraesCS4B01G179500 chr4A 90.881 318 5 4 320 629 159296425 159296124 4.160000e-109 405
4 TraesCS4B01G179500 chr4D 93.253 1912 53 23 927 2801 315596598 315598470 0.000000e+00 2747
5 TraesCS4B01G179500 chr4D 93.462 673 15 11 2799 3446 315599468 315600136 0.000000e+00 972
6 TraesCS4B01G179500 chr4D 87.662 616 28 19 316 927 315595996 315596567 0.000000e+00 673
7 TraesCS4B01G179500 chr3B 97.214 323 9 0 1 323 448571493 448571171 6.530000e-152 547
8 TraesCS4B01G179500 chr3B 87.013 308 38 2 1660 1966 694263570 694263876 2.560000e-91 346
9 TraesCS4B01G179500 chr1B 96.341 328 11 1 1 328 7120336 7120010 3.930000e-149 538
10 TraesCS4B01G179500 chr3D 96.037 328 12 1 1 327 35675813 35675486 1.830000e-147 532
11 TraesCS4B01G179500 chr3D 96.296 324 11 1 1 323 1888632 1888955 6.580000e-147 531
12 TraesCS4B01G179500 chr3D 95.975 323 13 0 1 323 161922383 161922061 3.060000e-145 525
13 TraesCS4B01G179500 chr3D 87.500 304 38 0 1663 1966 525917682 525917379 5.490000e-93 351
14 TraesCS4B01G179500 chr7D 96.552 319 11 0 1 319 163487280 163486962 2.360000e-146 529
15 TraesCS4B01G179500 chr5D 96.262 321 12 0 1 321 123803750 123803430 8.510000e-146 527
16 TraesCS4B01G179500 chr5B 96.262 321 12 0 1 321 611856323 611856643 8.510000e-146 527
17 TraesCS4B01G179500 chr2D 96.262 321 12 0 1 321 506521609 506521289 8.510000e-146 527
18 TraesCS4B01G179500 chr2D 88.599 307 35 0 1660 1966 48133243 48133549 1.170000e-99 374
19 TraesCS4B01G179500 chr2B 88.599 307 35 0 1660 1966 75847560 75847866 1.170000e-99 374
20 TraesCS4B01G179500 chr2A 88.816 304 34 0 1663 1966 51008492 51008189 1.170000e-99 374
21 TraesCS4B01G179500 chr3A 88.274 307 36 0 1660 1966 660196052 660196358 5.460000e-98 368
22 TraesCS4B01G179500 chr1D 85.437 309 45 0 1659 1967 60317505 60317813 4.310000e-84 322


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G179500 chr4B 393404611 393408070 3459 False 6390 6390 100.000000 1 3460 1 chr4B.!!$F1 3459
1 TraesCS4B01G179500 chr4A 159292796 159296425 3629 True 1438 3443 91.451667 320 3446 3 chr4A.!!$R1 3126
2 TraesCS4B01G179500 chr4D 315595996 315600136 4140 False 1464 2747 91.459000 316 3446 3 chr4D.!!$F1 3130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.109723 TGAGTGGTTTGGGTAGTGGC 59.89 55.0 0.0 0.0 0.0 5.01 F
747 1016 0.110486 TTCTTCCCAAGTCCACCAGC 59.89 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1643 0.390340 TGATGCAGAGCGACAGGTTC 60.39 55.000 0.00 0.0 0.00 3.62 R
2638 3001 1.000283 ACAGAACTGGAGCAGAAGACG 60.00 52.381 6.76 0.0 35.18 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.862274 ATATATTCTGAAGATGGACCTGTGA 57.138 36.000 7.73 0.00 0.00 3.58
26 27 4.916041 ATTCTGAAGATGGACCTGTGAA 57.084 40.909 0.00 0.00 0.00 3.18
27 28 4.705110 TTCTGAAGATGGACCTGTGAAA 57.295 40.909 0.00 0.00 0.00 2.69
28 29 4.277515 TCTGAAGATGGACCTGTGAAAG 57.722 45.455 0.00 0.00 0.00 2.62
29 30 3.903714 TCTGAAGATGGACCTGTGAAAGA 59.096 43.478 0.00 0.00 0.00 2.52
30 31 4.533707 TCTGAAGATGGACCTGTGAAAGAT 59.466 41.667 0.00 0.00 0.00 2.40
31 32 4.582869 TGAAGATGGACCTGTGAAAGATG 58.417 43.478 0.00 0.00 0.00 2.90
32 33 3.641434 AGATGGACCTGTGAAAGATGG 57.359 47.619 0.00 0.00 0.00 3.51
33 34 2.019984 GATGGACCTGTGAAAGATGGC 58.980 52.381 0.00 0.00 0.00 4.40
34 35 1.067295 TGGACCTGTGAAAGATGGCT 58.933 50.000 0.00 0.00 0.00 4.75
35 36 1.271543 TGGACCTGTGAAAGATGGCTG 60.272 52.381 0.00 0.00 0.00 4.85
36 37 0.807496 GACCTGTGAAAGATGGCTGC 59.193 55.000 0.00 0.00 0.00 5.25
37 38 0.957395 ACCTGTGAAAGATGGCTGCG 60.957 55.000 0.00 0.00 0.00 5.18
38 39 0.674581 CCTGTGAAAGATGGCTGCGA 60.675 55.000 0.00 0.00 0.00 5.10
39 40 0.445436 CTGTGAAAGATGGCTGCGAC 59.555 55.000 0.00 0.00 0.00 5.19
40 41 1.291184 TGTGAAAGATGGCTGCGACG 61.291 55.000 0.00 0.00 0.00 5.12
41 42 1.014044 GTGAAAGATGGCTGCGACGA 61.014 55.000 0.00 0.00 0.00 4.20
42 43 1.014044 TGAAAGATGGCTGCGACGAC 61.014 55.000 0.00 0.00 0.00 4.34
43 44 1.005037 AAAGATGGCTGCGACGACA 60.005 52.632 0.00 0.00 0.00 4.35
44 45 1.291877 AAAGATGGCTGCGACGACAC 61.292 55.000 0.00 0.00 0.00 3.67
45 46 2.432456 GATGGCTGCGACGACACA 60.432 61.111 0.00 0.00 0.00 3.72
46 47 2.027073 GATGGCTGCGACGACACAA 61.027 57.895 0.00 0.00 0.00 3.33
47 48 1.959899 GATGGCTGCGACGACACAAG 61.960 60.000 0.00 0.00 0.00 3.16
48 49 2.355837 GGCTGCGACGACACAAGA 60.356 61.111 0.00 0.00 0.00 3.02
49 50 2.375766 GGCTGCGACGACACAAGAG 61.376 63.158 0.00 0.00 0.00 2.85
50 51 1.661821 GCTGCGACGACACAAGAGT 60.662 57.895 0.00 0.00 0.00 3.24
61 62 3.967886 ACAAGAGTGTGTCTGACCG 57.032 52.632 5.17 0.00 36.31 4.79
62 63 0.389391 ACAAGAGTGTGTCTGACCGG 59.611 55.000 0.00 0.00 36.31 5.28
63 64 0.673985 CAAGAGTGTGTCTGACCGGA 59.326 55.000 9.46 0.00 34.84 5.14
64 65 1.273606 CAAGAGTGTGTCTGACCGGAT 59.726 52.381 9.46 0.00 34.84 4.18
65 66 1.178276 AGAGTGTGTCTGACCGGATC 58.822 55.000 9.46 2.18 32.57 3.36
66 67 0.179161 GAGTGTGTCTGACCGGATCG 60.179 60.000 9.46 0.00 0.00 3.69
67 68 0.894184 AGTGTGTCTGACCGGATCGT 60.894 55.000 9.46 0.00 0.00 3.73
68 69 0.732880 GTGTGTCTGACCGGATCGTG 60.733 60.000 9.46 0.00 0.00 4.35
69 70 1.805945 GTGTCTGACCGGATCGTGC 60.806 63.158 9.46 0.00 0.00 5.34
70 71 2.202756 GTCTGACCGGATCGTGCC 60.203 66.667 9.46 0.00 0.00 5.01
71 72 2.362503 TCTGACCGGATCGTGCCT 60.363 61.111 9.46 0.00 0.00 4.75
72 73 2.105128 CTGACCGGATCGTGCCTC 59.895 66.667 9.46 0.00 0.00 4.70
73 74 2.678580 TGACCGGATCGTGCCTCA 60.679 61.111 9.46 0.00 0.00 3.86
74 75 2.105128 GACCGGATCGTGCCTCAG 59.895 66.667 9.46 0.00 0.00 3.35
75 76 2.362503 ACCGGATCGTGCCTCAGA 60.363 61.111 9.46 0.00 0.00 3.27
76 77 2.105128 CCGGATCGTGCCTCAGAC 59.895 66.667 0.00 0.00 0.00 3.51
77 78 2.105128 CGGATCGTGCCTCAGACC 59.895 66.667 0.00 0.00 0.00 3.85
78 79 2.501610 GGATCGTGCCTCAGACCC 59.498 66.667 0.00 0.00 0.00 4.46
79 80 2.105128 GATCGTGCCTCAGACCCG 59.895 66.667 0.00 0.00 0.00 5.28
80 81 3.432051 GATCGTGCCTCAGACCCGG 62.432 68.421 0.00 0.00 0.00 5.73
81 82 4.988716 TCGTGCCTCAGACCCGGT 62.989 66.667 0.00 0.00 0.00 5.28
82 83 2.849096 ATCGTGCCTCAGACCCGGTA 62.849 60.000 0.00 0.00 0.00 4.02
83 84 2.423898 CGTGCCTCAGACCCGGTAT 61.424 63.158 0.00 0.00 0.00 2.73
84 85 1.144057 GTGCCTCAGACCCGGTATG 59.856 63.158 5.79 5.79 0.00 2.39
85 86 1.305802 TGCCTCAGACCCGGTATGT 60.306 57.895 11.92 0.00 0.00 2.29
86 87 1.144057 GCCTCAGACCCGGTATGTG 59.856 63.158 11.92 9.43 0.00 3.21
87 88 1.823295 CCTCAGACCCGGTATGTGG 59.177 63.158 16.74 16.74 33.32 4.17
88 89 1.144057 CTCAGACCCGGTATGTGGC 59.856 63.158 11.92 0.00 0.00 5.01
89 90 1.305802 TCAGACCCGGTATGTGGCT 60.306 57.895 11.92 0.00 0.00 4.75
90 91 1.144057 CAGACCCGGTATGTGGCTC 59.856 63.158 3.86 0.00 0.00 4.70
91 92 2.106332 GACCCGGTATGTGGCTCG 59.894 66.667 0.00 0.00 0.00 5.03
92 93 3.441011 GACCCGGTATGTGGCTCGG 62.441 68.421 0.00 0.00 41.90 4.63
93 94 4.910585 CCCGGTATGTGGCTCGGC 62.911 72.222 0.00 0.00 41.02 5.54
94 95 3.849951 CCGGTATGTGGCTCGGCT 61.850 66.667 0.00 0.00 35.95 5.52
95 96 2.586079 CGGTATGTGGCTCGGCTG 60.586 66.667 0.00 0.00 0.00 4.85
96 97 2.203070 GGTATGTGGCTCGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
97 98 2.203070 GTATGTGGCTCGGCTGGG 60.203 66.667 0.00 0.00 0.00 4.45
98 99 3.479203 TATGTGGCTCGGCTGGGG 61.479 66.667 0.00 0.00 0.00 4.96
110 111 2.283173 CTGGGGCTTCCGGCTTTT 60.283 61.111 0.00 0.00 41.46 2.27
111 112 2.600173 TGGGGCTTCCGGCTTTTG 60.600 61.111 0.00 0.00 41.46 2.44
112 113 2.282887 GGGGCTTCCGGCTTTTGA 60.283 61.111 0.00 0.00 41.46 2.69
113 114 1.682344 GGGGCTTCCGGCTTTTGAT 60.682 57.895 0.00 0.00 41.46 2.57
114 115 1.512694 GGGCTTCCGGCTTTTGATG 59.487 57.895 0.00 0.00 41.46 3.07
115 116 1.250840 GGGCTTCCGGCTTTTGATGT 61.251 55.000 0.00 0.00 41.46 3.06
116 117 0.603065 GGCTTCCGGCTTTTGATGTT 59.397 50.000 0.00 0.00 41.46 2.71
117 118 1.816224 GGCTTCCGGCTTTTGATGTTA 59.184 47.619 0.00 0.00 41.46 2.41
118 119 2.159379 GGCTTCCGGCTTTTGATGTTAG 60.159 50.000 0.00 0.00 41.46 2.34
119 120 2.159379 GCTTCCGGCTTTTGATGTTAGG 60.159 50.000 0.00 0.00 38.06 2.69
120 121 2.871096 TCCGGCTTTTGATGTTAGGT 57.129 45.000 0.00 0.00 0.00 3.08
121 122 3.149005 TCCGGCTTTTGATGTTAGGTT 57.851 42.857 0.00 0.00 0.00 3.50
122 123 3.492337 TCCGGCTTTTGATGTTAGGTTT 58.508 40.909 0.00 0.00 0.00 3.27
123 124 4.653868 TCCGGCTTTTGATGTTAGGTTTA 58.346 39.130 0.00 0.00 0.00 2.01
124 125 4.698304 TCCGGCTTTTGATGTTAGGTTTAG 59.302 41.667 0.00 0.00 0.00 1.85
125 126 4.142469 CCGGCTTTTGATGTTAGGTTTAGG 60.142 45.833 0.00 0.00 0.00 2.69
126 127 4.457949 CGGCTTTTGATGTTAGGTTTAGGT 59.542 41.667 0.00 0.00 0.00 3.08
127 128 5.619086 CGGCTTTTGATGTTAGGTTTAGGTG 60.619 44.000 0.00 0.00 0.00 4.00
128 129 5.475564 GGCTTTTGATGTTAGGTTTAGGTGA 59.524 40.000 0.00 0.00 0.00 4.02
129 130 6.349363 GGCTTTTGATGTTAGGTTTAGGTGAG 60.349 42.308 0.00 0.00 0.00 3.51
130 131 6.206829 GCTTTTGATGTTAGGTTTAGGTGAGT 59.793 38.462 0.00 0.00 0.00 3.41
131 132 7.504924 TTTTGATGTTAGGTTTAGGTGAGTG 57.495 36.000 0.00 0.00 0.00 3.51
132 133 5.160607 TGATGTTAGGTTTAGGTGAGTGG 57.839 43.478 0.00 0.00 0.00 4.00
133 134 4.595781 TGATGTTAGGTTTAGGTGAGTGGT 59.404 41.667 0.00 0.00 0.00 4.16
134 135 5.072600 TGATGTTAGGTTTAGGTGAGTGGTT 59.927 40.000 0.00 0.00 0.00 3.67
135 136 5.376756 TGTTAGGTTTAGGTGAGTGGTTT 57.623 39.130 0.00 0.00 0.00 3.27
136 137 5.127491 TGTTAGGTTTAGGTGAGTGGTTTG 58.873 41.667 0.00 0.00 0.00 2.93
137 138 3.223674 AGGTTTAGGTGAGTGGTTTGG 57.776 47.619 0.00 0.00 0.00 3.28
138 139 2.158519 AGGTTTAGGTGAGTGGTTTGGG 60.159 50.000 0.00 0.00 0.00 4.12
139 140 2.423803 GGTTTAGGTGAGTGGTTTGGGT 60.424 50.000 0.00 0.00 0.00 4.51
140 141 3.181441 GGTTTAGGTGAGTGGTTTGGGTA 60.181 47.826 0.00 0.00 0.00 3.69
141 142 4.070009 GTTTAGGTGAGTGGTTTGGGTAG 58.930 47.826 0.00 0.00 0.00 3.18
142 143 1.815757 AGGTGAGTGGTTTGGGTAGT 58.184 50.000 0.00 0.00 0.00 2.73
143 144 1.420138 AGGTGAGTGGTTTGGGTAGTG 59.580 52.381 0.00 0.00 0.00 2.74
144 145 1.544759 GGTGAGTGGTTTGGGTAGTGG 60.545 57.143 0.00 0.00 0.00 4.00
145 146 0.109723 TGAGTGGTTTGGGTAGTGGC 59.890 55.000 0.00 0.00 0.00 5.01
146 147 0.608308 GAGTGGTTTGGGTAGTGGCC 60.608 60.000 0.00 0.00 0.00 5.36
154 155 4.957164 GGTAGTGGCCCAACTAGC 57.043 61.111 14.55 14.55 42.15 3.42
155 156 1.988015 GGTAGTGGCCCAACTAGCA 59.012 57.895 21.48 0.00 45.97 3.49
156 157 0.546598 GGTAGTGGCCCAACTAGCAT 59.453 55.000 21.48 0.00 45.97 3.79
157 158 1.475213 GGTAGTGGCCCAACTAGCATC 60.475 57.143 21.48 4.44 45.97 3.91
158 159 0.837272 TAGTGGCCCAACTAGCATCC 59.163 55.000 0.00 0.00 0.00 3.51
159 160 1.453928 GTGGCCCAACTAGCATCCC 60.454 63.158 0.00 0.00 0.00 3.85
160 161 1.619363 TGGCCCAACTAGCATCCCT 60.619 57.895 0.00 0.00 0.00 4.20
161 162 1.214305 TGGCCCAACTAGCATCCCTT 61.214 55.000 0.00 0.00 0.00 3.95
162 163 0.466372 GGCCCAACTAGCATCCCTTC 60.466 60.000 0.00 0.00 0.00 3.46
163 164 0.255890 GCCCAACTAGCATCCCTTCA 59.744 55.000 0.00 0.00 0.00 3.02
164 165 1.133668 GCCCAACTAGCATCCCTTCAT 60.134 52.381 0.00 0.00 0.00 2.57
165 166 2.856222 CCCAACTAGCATCCCTTCATC 58.144 52.381 0.00 0.00 0.00 2.92
166 167 2.173356 CCCAACTAGCATCCCTTCATCA 59.827 50.000 0.00 0.00 0.00 3.07
167 168 3.181436 CCCAACTAGCATCCCTTCATCAT 60.181 47.826 0.00 0.00 0.00 2.45
168 169 4.042062 CCCAACTAGCATCCCTTCATCATA 59.958 45.833 0.00 0.00 0.00 2.15
169 170 5.280882 CCCAACTAGCATCCCTTCATCATAT 60.281 44.000 0.00 0.00 0.00 1.78
170 171 5.646793 CCAACTAGCATCCCTTCATCATATG 59.353 44.000 0.00 0.00 0.00 1.78
171 172 5.432680 ACTAGCATCCCTTCATCATATGG 57.567 43.478 2.13 0.00 0.00 2.74
172 173 3.733883 AGCATCCCTTCATCATATGGG 57.266 47.619 2.13 0.00 40.95 4.00
173 174 2.991713 AGCATCCCTTCATCATATGGGT 59.008 45.455 2.13 0.00 40.48 4.51
174 175 4.178339 AGCATCCCTTCATCATATGGGTA 58.822 43.478 2.13 0.00 40.48 3.69
175 176 4.603171 AGCATCCCTTCATCATATGGGTAA 59.397 41.667 2.13 0.00 40.48 2.85
176 177 4.946157 GCATCCCTTCATCATATGGGTAAG 59.054 45.833 2.13 4.21 40.48 2.34
177 178 5.280676 GCATCCCTTCATCATATGGGTAAGA 60.281 44.000 2.13 0.00 40.48 2.10
178 179 6.413052 CATCCCTTCATCATATGGGTAAGAG 58.587 44.000 2.13 0.00 40.48 2.85
179 180 5.476983 TCCCTTCATCATATGGGTAAGAGT 58.523 41.667 2.13 0.00 40.48 3.24
180 181 6.630131 TCCCTTCATCATATGGGTAAGAGTA 58.370 40.000 2.13 0.00 40.48 2.59
181 182 6.726299 TCCCTTCATCATATGGGTAAGAGTAG 59.274 42.308 2.13 0.00 40.48 2.57
182 183 6.402222 CCTTCATCATATGGGTAAGAGTAGC 58.598 44.000 2.13 0.00 0.00 3.58
183 184 5.644977 TCATCATATGGGTAAGAGTAGCG 57.355 43.478 2.13 0.00 0.00 4.26
184 185 4.462834 TCATCATATGGGTAAGAGTAGCGG 59.537 45.833 2.13 0.00 0.00 5.52
185 186 2.561419 TCATATGGGTAAGAGTAGCGGC 59.439 50.000 2.13 0.00 0.00 6.53
186 187 2.076207 TATGGGTAAGAGTAGCGGCA 57.924 50.000 1.45 0.00 0.00 5.69
187 188 1.424638 ATGGGTAAGAGTAGCGGCAT 58.575 50.000 1.45 0.00 0.00 4.40
188 189 2.076207 TGGGTAAGAGTAGCGGCATA 57.924 50.000 1.45 0.00 0.00 3.14
189 190 2.605257 TGGGTAAGAGTAGCGGCATAT 58.395 47.619 1.45 0.00 0.00 1.78
190 191 2.299013 TGGGTAAGAGTAGCGGCATATG 59.701 50.000 1.45 0.00 0.00 1.78
191 192 2.299297 GGGTAAGAGTAGCGGCATATGT 59.701 50.000 1.45 0.00 0.00 2.29
192 193 3.244112 GGGTAAGAGTAGCGGCATATGTT 60.244 47.826 1.45 0.00 0.00 2.71
193 194 3.741344 GGTAAGAGTAGCGGCATATGTTG 59.259 47.826 1.45 0.00 0.00 3.33
203 204 1.597742 GCATATGTTGCCGAGATGGT 58.402 50.000 4.29 0.00 46.15 3.55
204 205 1.265095 GCATATGTTGCCGAGATGGTG 59.735 52.381 4.29 0.00 46.15 4.17
205 206 1.875514 CATATGTTGCCGAGATGGTGG 59.124 52.381 0.00 0.00 41.21 4.61
206 207 1.199615 TATGTTGCCGAGATGGTGGA 58.800 50.000 0.00 0.00 41.21 4.02
207 208 0.548031 ATGTTGCCGAGATGGTGGAT 59.452 50.000 0.00 0.00 41.21 3.41
208 209 0.327924 TGTTGCCGAGATGGTGGATT 59.672 50.000 0.00 0.00 41.21 3.01
209 210 1.017387 GTTGCCGAGATGGTGGATTC 58.983 55.000 0.00 0.00 41.21 2.52
210 211 0.617935 TTGCCGAGATGGTGGATTCA 59.382 50.000 0.00 0.00 41.21 2.57
211 212 0.178767 TGCCGAGATGGTGGATTCAG 59.821 55.000 0.00 0.00 41.21 3.02
212 213 0.533755 GCCGAGATGGTGGATTCAGG 60.534 60.000 0.00 0.00 41.21 3.86
213 214 1.123077 CCGAGATGGTGGATTCAGGA 58.877 55.000 0.00 0.00 0.00 3.86
214 215 1.486310 CCGAGATGGTGGATTCAGGAA 59.514 52.381 0.00 0.00 0.00 3.36
215 216 2.105477 CCGAGATGGTGGATTCAGGAAT 59.895 50.000 0.00 0.00 0.00 3.01
216 217 3.324846 CCGAGATGGTGGATTCAGGAATA 59.675 47.826 0.00 0.00 0.00 1.75
217 218 4.019860 CCGAGATGGTGGATTCAGGAATAT 60.020 45.833 0.00 0.00 0.00 1.28
218 219 5.513788 CCGAGATGGTGGATTCAGGAATATT 60.514 44.000 0.00 0.00 0.00 1.28
219 220 5.410746 CGAGATGGTGGATTCAGGAATATTG 59.589 44.000 0.00 0.00 0.00 1.90
220 221 6.271585 AGATGGTGGATTCAGGAATATTGT 57.728 37.500 0.00 0.00 0.00 2.71
221 222 6.302269 AGATGGTGGATTCAGGAATATTGTC 58.698 40.000 0.00 0.00 0.00 3.18
222 223 5.715439 TGGTGGATTCAGGAATATTGTCT 57.285 39.130 0.00 0.00 0.00 3.41
223 224 5.439721 TGGTGGATTCAGGAATATTGTCTG 58.560 41.667 0.00 0.89 0.00 3.51
224 225 5.044919 TGGTGGATTCAGGAATATTGTCTGT 60.045 40.000 12.45 0.00 0.00 3.41
225 226 6.157820 TGGTGGATTCAGGAATATTGTCTGTA 59.842 38.462 12.45 6.35 0.00 2.74
226 227 7.054124 GGTGGATTCAGGAATATTGTCTGTAA 58.946 38.462 12.45 8.08 0.00 2.41
227 228 7.721399 GGTGGATTCAGGAATATTGTCTGTAAT 59.279 37.037 12.45 10.98 0.00 1.89
228 229 9.778741 GTGGATTCAGGAATATTGTCTGTAATA 57.221 33.333 12.45 0.00 0.00 0.98
229 230 9.778741 TGGATTCAGGAATATTGTCTGTAATAC 57.221 33.333 12.45 11.68 0.00 1.89
244 245 8.627403 TGTCTGTAATACTTTATAAGGTCCTCG 58.373 37.037 3.13 0.00 0.00 4.63
245 246 8.844244 GTCTGTAATACTTTATAAGGTCCTCGA 58.156 37.037 3.13 0.00 0.00 4.04
246 247 9.064706 TCTGTAATACTTTATAAGGTCCTCGAG 57.935 37.037 5.13 5.13 0.00 4.04
247 248 8.985315 TGTAATACTTTATAAGGTCCTCGAGA 57.015 34.615 15.71 0.00 0.00 4.04
248 249 9.412460 TGTAATACTTTATAAGGTCCTCGAGAA 57.588 33.333 15.71 0.00 0.00 2.87
262 263 9.765795 AGGTCCTCGAGAATAATTAATAAAGTG 57.234 33.333 15.71 0.00 0.00 3.16
263 264 8.989980 GGTCCTCGAGAATAATTAATAAAGTGG 58.010 37.037 15.71 0.00 0.00 4.00
264 265 9.543783 GTCCTCGAGAATAATTAATAAAGTGGT 57.456 33.333 15.71 0.00 0.00 4.16
265 266 9.760077 TCCTCGAGAATAATTAATAAAGTGGTC 57.240 33.333 15.71 0.00 0.00 4.02
266 267 8.700644 CCTCGAGAATAATTAATAAAGTGGTCG 58.299 37.037 15.71 0.00 0.00 4.79
267 268 9.245962 CTCGAGAATAATTAATAAAGTGGTCGT 57.754 33.333 6.58 0.00 0.00 4.34
275 276 8.677148 AATTAATAAAGTGGTCGTATGCATCT 57.323 30.769 0.19 0.00 0.00 2.90
276 277 7.709269 TTAATAAAGTGGTCGTATGCATCTC 57.291 36.000 0.19 0.00 0.00 2.75
277 278 2.604046 AAGTGGTCGTATGCATCTCC 57.396 50.000 0.19 2.39 0.00 3.71
278 279 0.753262 AGTGGTCGTATGCATCTCCC 59.247 55.000 0.19 0.00 0.00 4.30
279 280 0.464036 GTGGTCGTATGCATCTCCCA 59.536 55.000 0.19 2.59 0.00 4.37
280 281 0.752658 TGGTCGTATGCATCTCCCAG 59.247 55.000 0.19 0.00 0.00 4.45
281 282 1.040646 GGTCGTATGCATCTCCCAGA 58.959 55.000 0.19 0.00 0.00 3.86
282 283 1.620819 GGTCGTATGCATCTCCCAGAT 59.379 52.381 0.19 0.00 34.74 2.90
290 291 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
291 292 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
292 293 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
293 294 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
294 295 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
295 296 3.473647 CAGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
296 297 3.160047 AGATGCAGAGGCCGGGAG 61.160 66.667 2.18 0.00 40.13 4.30
297 298 3.474570 GATGCAGAGGCCGGGAGT 61.475 66.667 2.18 0.00 40.13 3.85
298 299 3.453070 GATGCAGAGGCCGGGAGTC 62.453 68.421 2.18 0.00 40.13 3.36
300 301 3.474570 GCAGAGGCCGGGAGTCAT 61.475 66.667 2.18 0.00 0.00 3.06
301 302 2.818132 CAGAGGCCGGGAGTCATC 59.182 66.667 2.18 0.00 0.00 2.92
302 303 1.760086 CAGAGGCCGGGAGTCATCT 60.760 63.158 2.18 0.00 0.00 2.90
303 304 1.002274 AGAGGCCGGGAGTCATCTT 59.998 57.895 2.18 0.00 0.00 2.40
304 305 1.045911 AGAGGCCGGGAGTCATCTTC 61.046 60.000 2.18 0.00 0.00 2.87
305 306 1.306141 AGGCCGGGAGTCATCTTCA 60.306 57.895 2.18 0.00 0.00 3.02
306 307 0.692419 AGGCCGGGAGTCATCTTCAT 60.692 55.000 2.18 0.00 0.00 2.57
307 308 0.181350 GGCCGGGAGTCATCTTCATT 59.819 55.000 2.18 0.00 0.00 2.57
308 309 1.408822 GGCCGGGAGTCATCTTCATTT 60.409 52.381 2.18 0.00 0.00 2.32
309 310 2.369394 GCCGGGAGTCATCTTCATTTT 58.631 47.619 2.18 0.00 0.00 1.82
310 311 2.356069 GCCGGGAGTCATCTTCATTTTC 59.644 50.000 2.18 0.00 0.00 2.29
311 312 3.878778 CCGGGAGTCATCTTCATTTTCT 58.121 45.455 0.00 0.00 0.00 2.52
312 313 4.683400 GCCGGGAGTCATCTTCATTTTCTA 60.683 45.833 2.18 0.00 0.00 2.10
313 314 5.428253 CCGGGAGTCATCTTCATTTTCTAA 58.572 41.667 0.00 0.00 0.00 2.10
314 315 5.880332 CCGGGAGTCATCTTCATTTTCTAAA 59.120 40.000 0.00 0.00 0.00 1.85
393 394 2.481952 CACCCAAAAGCGAAGAGAAGAG 59.518 50.000 0.00 0.00 0.00 2.85
394 395 2.368875 ACCCAAAAGCGAAGAGAAGAGA 59.631 45.455 0.00 0.00 0.00 3.10
395 396 3.181454 ACCCAAAAGCGAAGAGAAGAGAA 60.181 43.478 0.00 0.00 0.00 2.87
396 397 3.434984 CCCAAAAGCGAAGAGAAGAGAAG 59.565 47.826 0.00 0.00 0.00 2.85
397 398 3.434984 CCAAAAGCGAAGAGAAGAGAAGG 59.565 47.826 0.00 0.00 0.00 3.46
398 399 3.326836 AAAGCGAAGAGAAGAGAAGGG 57.673 47.619 0.00 0.00 0.00 3.95
399 400 2.223803 AGCGAAGAGAAGAGAAGGGA 57.776 50.000 0.00 0.00 0.00 4.20
400 401 2.099405 AGCGAAGAGAAGAGAAGGGAG 58.901 52.381 0.00 0.00 0.00 4.30
401 402 2.096248 GCGAAGAGAAGAGAAGGGAGA 58.904 52.381 0.00 0.00 0.00 3.71
402 403 2.494073 GCGAAGAGAAGAGAAGGGAGAA 59.506 50.000 0.00 0.00 0.00 2.87
403 404 3.428862 GCGAAGAGAAGAGAAGGGAGAAG 60.429 52.174 0.00 0.00 0.00 2.85
404 405 3.761752 CGAAGAGAAGAGAAGGGAGAAGT 59.238 47.826 0.00 0.00 0.00 3.01
550 551 0.457166 TCAAATCCGTGTACGCGAGG 60.457 55.000 29.24 14.05 38.18 4.63
651 920 4.976224 AAAGCACGATTAATTGTACCCC 57.024 40.909 8.05 0.00 0.00 4.95
746 1015 1.884067 GCTTCTTCCCAAGTCCACCAG 60.884 57.143 0.00 0.00 0.00 4.00
747 1016 0.110486 TTCTTCCCAAGTCCACCAGC 59.890 55.000 0.00 0.00 0.00 4.85
822 1091 2.269520 CTCCCGCCCAATCCATCACA 62.270 60.000 0.00 0.00 0.00 3.58
844 1113 2.658593 CCCCGCGCATACTCTTCG 60.659 66.667 8.75 0.00 0.00 3.79
851 1125 1.482278 CGCATACTCTTCGCTTCTCC 58.518 55.000 0.00 0.00 0.00 3.71
861 1135 1.757682 TCGCTTCTCCTCTCTTCTCC 58.242 55.000 0.00 0.00 0.00 3.71
862 1136 0.744281 CGCTTCTCCTCTCTTCTCCC 59.256 60.000 0.00 0.00 0.00 4.30
864 1138 1.398692 CTTCTCCTCTCTTCTCCCCG 58.601 60.000 0.00 0.00 0.00 5.73
866 1140 1.380515 CTCCTCTCTTCTCCCCGCA 60.381 63.158 0.00 0.00 0.00 5.69
880 1154 2.739671 CGCAGCACAGCAGCACTA 60.740 61.111 7.15 0.00 41.08 2.74
892 1166 4.509737 GCACTACCTCCGGCCGTC 62.510 72.222 26.12 0.00 0.00 4.79
918 1193 3.138304 GCAAACCAAACCAAAATCTCCC 58.862 45.455 0.00 0.00 0.00 4.30
994 1300 1.693083 GGAGGCGGACGATTTGAACG 61.693 60.000 0.00 0.00 0.00 3.95
995 1301 1.005394 AGGCGGACGATTTGAACGT 60.005 52.632 0.00 0.00 46.58 3.99
996 1302 0.244450 AGGCGGACGATTTGAACGTA 59.756 50.000 0.00 0.00 43.97 3.57
997 1303 0.367887 GGCGGACGATTTGAACGTAC 59.632 55.000 0.00 0.00 43.97 3.67
1178 1488 3.313526 GGTAGGATAATTGCACTGCACAG 59.686 47.826 2.26 0.00 38.71 3.66
1182 1492 1.155889 TAATTGCACTGCACAGTCCG 58.844 50.000 2.26 0.00 40.20 4.79
1218 1530 2.287849 GCTGGTCTTTCTTTCAAGTGCC 60.288 50.000 0.00 0.00 0.00 5.01
1292 1611 8.101654 ACGTGAGGCTTAGATATTTCTAGTAG 57.898 38.462 0.00 0.00 35.88 2.57
1293 1612 7.720515 ACGTGAGGCTTAGATATTTCTAGTAGT 59.279 37.037 0.00 0.00 35.88 2.73
1294 1613 9.217278 CGTGAGGCTTAGATATTTCTAGTAGTA 57.783 37.037 0.00 0.00 35.88 1.82
1296 1615 9.217278 TGAGGCTTAGATATTTCTAGTAGTACG 57.783 37.037 0.00 0.00 35.88 3.67
1297 1616 9.218440 GAGGCTTAGATATTTCTAGTAGTACGT 57.782 37.037 0.00 0.00 35.88 3.57
1320 1643 1.750399 CATGGAGGGGGAAGCAACG 60.750 63.158 0.00 0.00 0.00 4.10
1404 1727 2.404566 TTTGTCTAGCAGCCGCCCAA 62.405 55.000 0.00 0.00 39.83 4.12
1433 1767 4.766891 GTGAATGAGAGAGATAGAGGGAGG 59.233 50.000 0.00 0.00 0.00 4.30
1575 1917 2.927553 AATCAGCAAGTTGGCGAATC 57.072 45.000 4.75 0.00 39.27 2.52
1582 1924 5.466728 TCAGCAAGTTGGCGAATCTATATTC 59.533 40.000 4.75 0.00 38.53 1.75
1583 1925 5.237127 CAGCAAGTTGGCGAATCTATATTCA 59.763 40.000 4.75 0.00 41.44 2.57
1623 1965 6.381707 TGATGTGATGTTCCATTCATTCCATT 59.618 34.615 0.00 0.00 0.00 3.16
1624 1966 6.211587 TGTGATGTTCCATTCATTCCATTC 57.788 37.500 0.00 0.00 0.00 2.67
1625 1967 5.127519 TGTGATGTTCCATTCATTCCATTCC 59.872 40.000 0.00 0.00 0.00 3.01
1626 1968 5.127519 GTGATGTTCCATTCATTCCATTCCA 59.872 40.000 0.00 0.00 0.00 3.53
1627 1969 5.900699 TGATGTTCCATTCATTCCATTCCAT 59.099 36.000 0.00 0.00 0.00 3.41
1647 1989 3.763097 TGTGATTAATCTTGCCTTGCG 57.237 42.857 16.24 0.00 0.00 4.85
2039 2393 0.321387 ACGCTCTCTACGAGTCACCA 60.321 55.000 0.00 0.00 41.98 4.17
2288 2642 1.153489 CACGGACCAGCTGATCCAG 60.153 63.158 27.20 20.45 34.35 3.86
2399 2753 0.459237 ACTTCGAGATCGGCAGCTTG 60.459 55.000 1.91 0.00 40.29 4.01
2638 3001 0.460987 CTGCACGTGAAGATCTCCCC 60.461 60.000 19.55 0.00 0.00 4.81
2640 3003 1.890894 CACGTGAAGATCTCCCCGT 59.109 57.895 10.90 1.47 32.60 5.28
2667 3032 0.033504 TCCAGTTCTGTGCCGTCTTC 59.966 55.000 0.00 0.00 0.00 2.87
2668 3033 0.951040 CCAGTTCTGTGCCGTCTTCC 60.951 60.000 0.00 0.00 0.00 3.46
2673 3038 3.316573 CTGTGCCGTCTTCCCTCCC 62.317 68.421 0.00 0.00 0.00 4.30
2682 3047 2.354403 CGTCTTCCCTCCCGTGTTAATT 60.354 50.000 0.00 0.00 0.00 1.40
2683 3048 3.682696 GTCTTCCCTCCCGTGTTAATTT 58.317 45.455 0.00 0.00 0.00 1.82
2684 3049 4.621274 CGTCTTCCCTCCCGTGTTAATTTA 60.621 45.833 0.00 0.00 0.00 1.40
2711 3076 9.651913 TTATTACTACGTACAAGGGTAAAAAGG 57.348 33.333 8.02 0.00 0.00 3.11
2763 3131 2.125832 GTTAGCTGTGCCGCCGTA 60.126 61.111 0.00 0.00 0.00 4.02
2771 3139 1.668751 CTGTGCCGCCGTAAATTATGT 59.331 47.619 0.00 0.00 0.00 2.29
2774 3142 1.937223 TGCCGCCGTAAATTATGTGAG 59.063 47.619 0.00 0.00 0.00 3.51
2779 3147 3.869246 CGCCGTAAATTATGTGAGGTTCT 59.131 43.478 0.00 0.00 0.00 3.01
2817 4190 9.814899 CTCATTCTTTCTGAGTGATTACTACAT 57.185 33.333 0.00 0.00 40.00 2.29
3187 4809 2.472059 ATGGCCGCTGCATTACACG 61.472 57.895 1.55 0.00 40.13 4.49
3224 4846 1.340248 ACTCTTCCGTCGTGTTCACAT 59.660 47.619 3.87 0.00 0.00 3.21
3227 4849 2.131972 CTTCCGTCGTGTTCACATTCA 58.868 47.619 3.87 0.00 0.00 2.57
3228 4850 1.493772 TCCGTCGTGTTCACATTCAC 58.506 50.000 3.87 0.00 0.00 3.18
3229 4851 1.067974 TCCGTCGTGTTCACATTCACT 59.932 47.619 3.87 0.00 33.07 3.41
3286 4924 1.314534 TGAATCCAAGTGCATGCCGG 61.315 55.000 16.68 10.61 0.00 6.13
3318 4956 6.810911 TGCTTTAAAATTTCAGCACTAACCA 58.189 32.000 13.10 0.00 37.35 3.67
3319 4957 7.441017 TGCTTTAAAATTTCAGCACTAACCAT 58.559 30.769 13.10 0.00 37.35 3.55
3446 5084 4.123497 ACCAGAAAAGAAAACCAAGTGC 57.877 40.909 0.00 0.00 0.00 4.40
3447 5085 3.513515 ACCAGAAAAGAAAACCAAGTGCA 59.486 39.130 0.00 0.00 0.00 4.57
3448 5086 3.865164 CCAGAAAAGAAAACCAAGTGCAC 59.135 43.478 9.40 9.40 0.00 4.57
3449 5087 3.547468 CAGAAAAGAAAACCAAGTGCACG 59.453 43.478 12.01 0.00 0.00 5.34
3450 5088 3.442273 AGAAAAGAAAACCAAGTGCACGA 59.558 39.130 12.01 0.00 0.00 4.35
3451 5089 4.097892 AGAAAAGAAAACCAAGTGCACGAT 59.902 37.500 12.01 1.15 0.00 3.73
3452 5090 5.298276 AGAAAAGAAAACCAAGTGCACGATA 59.702 36.000 12.01 0.00 0.00 2.92
3453 5091 5.705609 AAAGAAAACCAAGTGCACGATAT 57.294 34.783 12.01 0.00 0.00 1.63
3454 5092 5.705609 AAGAAAACCAAGTGCACGATATT 57.294 34.783 12.01 2.33 0.00 1.28
3455 5093 5.705609 AGAAAACCAAGTGCACGATATTT 57.294 34.783 12.01 10.38 0.00 1.40
3456 5094 6.084326 AGAAAACCAAGTGCACGATATTTT 57.916 33.333 18.52 18.52 0.00 1.82
3457 5095 6.149633 AGAAAACCAAGTGCACGATATTTTC 58.850 36.000 27.14 27.14 35.85 2.29
3458 5096 4.434713 AACCAAGTGCACGATATTTTCC 57.565 40.909 12.01 0.00 0.00 3.13
3459 5097 2.418628 ACCAAGTGCACGATATTTTCCG 59.581 45.455 12.01 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.267620 TCACAGGTCCATCTTCAGAATATATT 57.732 34.615 0.00 0.00 0.00 1.28
1 2 7.862274 TCACAGGTCCATCTTCAGAATATAT 57.138 36.000 0.00 0.00 0.00 0.86
2 3 7.675161 TTCACAGGTCCATCTTCAGAATATA 57.325 36.000 0.00 0.00 0.00 0.86
3 4 6.566079 TTCACAGGTCCATCTTCAGAATAT 57.434 37.500 0.00 0.00 0.00 1.28
4 5 6.213397 TCTTTCACAGGTCCATCTTCAGAATA 59.787 38.462 0.00 0.00 0.00 1.75
5 6 4.916041 TTCACAGGTCCATCTTCAGAAT 57.084 40.909 0.00 0.00 0.00 2.40
6 7 4.347876 TCTTTCACAGGTCCATCTTCAGAA 59.652 41.667 0.00 0.00 0.00 3.02
7 8 3.903714 TCTTTCACAGGTCCATCTTCAGA 59.096 43.478 0.00 0.00 0.00 3.27
8 9 4.277515 TCTTTCACAGGTCCATCTTCAG 57.722 45.455 0.00 0.00 0.00 3.02
9 10 4.566278 CCATCTTTCACAGGTCCATCTTCA 60.566 45.833 0.00 0.00 0.00 3.02
10 11 3.944015 CCATCTTTCACAGGTCCATCTTC 59.056 47.826 0.00 0.00 0.00 2.87
11 12 3.875369 GCCATCTTTCACAGGTCCATCTT 60.875 47.826 0.00 0.00 0.00 2.40
12 13 2.356535 GCCATCTTTCACAGGTCCATCT 60.357 50.000 0.00 0.00 0.00 2.90
13 14 2.019984 GCCATCTTTCACAGGTCCATC 58.980 52.381 0.00 0.00 0.00 3.51
14 15 1.637553 AGCCATCTTTCACAGGTCCAT 59.362 47.619 0.00 0.00 0.00 3.41
15 16 1.067295 AGCCATCTTTCACAGGTCCA 58.933 50.000 0.00 0.00 0.00 4.02
16 17 1.457346 CAGCCATCTTTCACAGGTCC 58.543 55.000 0.00 0.00 0.00 4.46
17 18 0.807496 GCAGCCATCTTTCACAGGTC 59.193 55.000 0.00 0.00 0.00 3.85
18 19 0.957395 CGCAGCCATCTTTCACAGGT 60.957 55.000 0.00 0.00 0.00 4.00
19 20 0.674581 TCGCAGCCATCTTTCACAGG 60.675 55.000 0.00 0.00 0.00 4.00
20 21 0.445436 GTCGCAGCCATCTTTCACAG 59.555 55.000 0.00 0.00 0.00 3.66
21 22 1.291184 CGTCGCAGCCATCTTTCACA 61.291 55.000 0.00 0.00 0.00 3.58
22 23 1.014044 TCGTCGCAGCCATCTTTCAC 61.014 55.000 0.00 0.00 0.00 3.18
23 24 1.014044 GTCGTCGCAGCCATCTTTCA 61.014 55.000 0.00 0.00 0.00 2.69
24 25 1.014044 TGTCGTCGCAGCCATCTTTC 61.014 55.000 0.00 0.00 0.00 2.62
25 26 1.005037 TGTCGTCGCAGCCATCTTT 60.005 52.632 0.00 0.00 0.00 2.52
26 27 1.738099 GTGTCGTCGCAGCCATCTT 60.738 57.895 0.00 0.00 0.00 2.40
27 28 2.125912 GTGTCGTCGCAGCCATCT 60.126 61.111 0.00 0.00 0.00 2.90
28 29 1.959899 CTTGTGTCGTCGCAGCCATC 61.960 60.000 0.00 0.00 35.43 3.51
29 30 2.029288 CTTGTGTCGTCGCAGCCAT 61.029 57.895 0.00 0.00 35.43 4.40
30 31 2.661537 CTTGTGTCGTCGCAGCCA 60.662 61.111 0.00 0.00 35.43 4.75
31 32 2.355837 TCTTGTGTCGTCGCAGCC 60.356 61.111 0.00 0.00 35.43 4.85
32 33 1.661821 ACTCTTGTGTCGTCGCAGC 60.662 57.895 0.00 0.00 35.43 5.25
33 34 2.136649 CACTCTTGTGTCGTCGCAG 58.863 57.895 0.00 0.00 39.24 5.18
34 35 4.319249 CACTCTTGTGTCGTCGCA 57.681 55.556 0.00 0.00 39.24 5.10
43 44 0.389391 CCGGTCAGACACACTCTTGT 59.611 55.000 2.17 0.00 35.84 3.16
44 45 0.673985 TCCGGTCAGACACACTCTTG 59.326 55.000 0.00 0.00 0.00 3.02
45 46 1.546476 GATCCGGTCAGACACACTCTT 59.454 52.381 0.00 0.00 0.00 2.85
46 47 1.178276 GATCCGGTCAGACACACTCT 58.822 55.000 0.00 0.00 0.00 3.24
47 48 0.179161 CGATCCGGTCAGACACACTC 60.179 60.000 0.00 0.00 0.00 3.51
48 49 0.894184 ACGATCCGGTCAGACACACT 60.894 55.000 0.00 0.00 0.00 3.55
49 50 0.732880 CACGATCCGGTCAGACACAC 60.733 60.000 0.00 0.00 0.00 3.82
50 51 1.584495 CACGATCCGGTCAGACACA 59.416 57.895 0.00 0.00 0.00 3.72
51 52 1.805945 GCACGATCCGGTCAGACAC 60.806 63.158 0.00 0.00 0.00 3.67
52 53 2.571757 GCACGATCCGGTCAGACA 59.428 61.111 0.00 0.00 0.00 3.41
53 54 2.202756 GGCACGATCCGGTCAGAC 60.203 66.667 0.00 0.00 0.00 3.51
54 55 2.362503 AGGCACGATCCGGTCAGA 60.363 61.111 0.00 0.00 0.00 3.27
55 56 2.105128 GAGGCACGATCCGGTCAG 59.895 66.667 0.00 0.00 0.00 3.51
56 57 2.678580 TGAGGCACGATCCGGTCA 60.679 61.111 0.00 0.00 0.00 4.02
57 58 2.105128 CTGAGGCACGATCCGGTC 59.895 66.667 0.00 0.00 0.00 4.79
58 59 2.362503 TCTGAGGCACGATCCGGT 60.363 61.111 0.00 0.00 0.00 5.28
59 60 2.105128 GTCTGAGGCACGATCCGG 59.895 66.667 0.00 0.00 0.00 5.14
60 61 2.105128 GGTCTGAGGCACGATCCG 59.895 66.667 0.00 0.00 0.00 4.18
61 62 2.501610 GGGTCTGAGGCACGATCC 59.498 66.667 0.00 0.00 0.00 3.36
62 63 2.105128 CGGGTCTGAGGCACGATC 59.895 66.667 0.59 0.00 0.00 3.69
63 64 2.849096 TACCGGGTCTGAGGCACGAT 62.849 60.000 11.65 0.00 0.00 3.73
64 65 2.849096 ATACCGGGTCTGAGGCACGA 62.849 60.000 11.65 0.00 0.00 4.35
65 66 2.423898 ATACCGGGTCTGAGGCACG 61.424 63.158 0.00 0.00 0.00 5.34
66 67 1.144057 CATACCGGGTCTGAGGCAC 59.856 63.158 6.32 0.00 0.00 5.01
67 68 1.305802 ACATACCGGGTCTGAGGCA 60.306 57.895 18.30 0.00 0.00 4.75
68 69 1.144057 CACATACCGGGTCTGAGGC 59.856 63.158 18.30 0.00 0.00 4.70
69 70 1.823295 CCACATACCGGGTCTGAGG 59.177 63.158 18.30 15.59 0.00 3.86
70 71 1.144057 GCCACATACCGGGTCTGAG 59.856 63.158 18.30 10.73 0.00 3.35
71 72 1.305802 AGCCACATACCGGGTCTGA 60.306 57.895 18.30 0.00 0.00 3.27
72 73 1.144057 GAGCCACATACCGGGTCTG 59.856 63.158 6.32 7.03 45.62 3.51
73 74 2.423898 CGAGCCACATACCGGGTCT 61.424 63.158 6.32 0.00 46.65 3.85
74 75 2.106332 CGAGCCACATACCGGGTC 59.894 66.667 6.32 0.00 45.62 4.46
75 76 3.467226 CCGAGCCACATACCGGGT 61.467 66.667 6.32 4.46 38.42 5.28
76 77 4.910585 GCCGAGCCACATACCGGG 62.911 72.222 6.32 0.00 42.02 5.73
77 78 3.849951 AGCCGAGCCACATACCGG 61.850 66.667 0.00 0.00 44.34 5.28
78 79 2.586079 CAGCCGAGCCACATACCG 60.586 66.667 0.00 0.00 0.00 4.02
79 80 2.203070 CCAGCCGAGCCACATACC 60.203 66.667 0.00 0.00 0.00 2.73
80 81 2.203070 CCCAGCCGAGCCACATAC 60.203 66.667 0.00 0.00 0.00 2.39
81 82 3.479203 CCCCAGCCGAGCCACATA 61.479 66.667 0.00 0.00 0.00 2.29
93 94 2.283173 AAAAGCCGGAAGCCCCAG 60.283 61.111 5.05 0.00 45.47 4.45
94 95 2.439553 ATCAAAAGCCGGAAGCCCCA 62.440 55.000 5.05 0.00 45.47 4.96
95 96 1.682344 ATCAAAAGCCGGAAGCCCC 60.682 57.895 5.05 0.00 45.47 5.80
96 97 1.250840 ACATCAAAAGCCGGAAGCCC 61.251 55.000 5.05 0.00 45.47 5.19
97 98 0.603065 AACATCAAAAGCCGGAAGCC 59.397 50.000 5.05 0.00 45.47 4.35
98 99 2.159379 CCTAACATCAAAAGCCGGAAGC 60.159 50.000 5.05 0.00 44.25 3.86
99 100 3.081804 ACCTAACATCAAAAGCCGGAAG 58.918 45.455 5.05 0.00 0.00 3.46
100 101 3.149005 ACCTAACATCAAAAGCCGGAA 57.851 42.857 5.05 0.00 0.00 4.30
101 102 2.871096 ACCTAACATCAAAAGCCGGA 57.129 45.000 5.05 0.00 0.00 5.14
102 103 3.934457 AAACCTAACATCAAAAGCCGG 57.066 42.857 0.00 0.00 0.00 6.13
103 104 4.457949 ACCTAAACCTAACATCAAAAGCCG 59.542 41.667 0.00 0.00 0.00 5.52
104 105 5.475564 TCACCTAAACCTAACATCAAAAGCC 59.524 40.000 0.00 0.00 0.00 4.35
105 106 6.206829 ACTCACCTAAACCTAACATCAAAAGC 59.793 38.462 0.00 0.00 0.00 3.51
106 107 7.308589 CCACTCACCTAAACCTAACATCAAAAG 60.309 40.741 0.00 0.00 0.00 2.27
107 108 6.488683 CCACTCACCTAAACCTAACATCAAAA 59.511 38.462 0.00 0.00 0.00 2.44
108 109 6.001460 CCACTCACCTAAACCTAACATCAAA 58.999 40.000 0.00 0.00 0.00 2.69
109 110 5.072600 ACCACTCACCTAAACCTAACATCAA 59.927 40.000 0.00 0.00 0.00 2.57
110 111 4.595781 ACCACTCACCTAAACCTAACATCA 59.404 41.667 0.00 0.00 0.00 3.07
111 112 5.161943 ACCACTCACCTAAACCTAACATC 57.838 43.478 0.00 0.00 0.00 3.06
112 113 5.578157 AACCACTCACCTAAACCTAACAT 57.422 39.130 0.00 0.00 0.00 2.71
113 114 5.127491 CAAACCACTCACCTAAACCTAACA 58.873 41.667 0.00 0.00 0.00 2.41
114 115 4.517832 CCAAACCACTCACCTAAACCTAAC 59.482 45.833 0.00 0.00 0.00 2.34
115 116 4.446600 CCCAAACCACTCACCTAAACCTAA 60.447 45.833 0.00 0.00 0.00 2.69
116 117 3.073356 CCCAAACCACTCACCTAAACCTA 59.927 47.826 0.00 0.00 0.00 3.08
117 118 2.158519 CCCAAACCACTCACCTAAACCT 60.159 50.000 0.00 0.00 0.00 3.50
118 119 2.235891 CCCAAACCACTCACCTAAACC 58.764 52.381 0.00 0.00 0.00 3.27
119 120 2.940158 ACCCAAACCACTCACCTAAAC 58.060 47.619 0.00 0.00 0.00 2.01
120 121 3.717913 ACTACCCAAACCACTCACCTAAA 59.282 43.478 0.00 0.00 0.00 1.85
121 122 3.071892 CACTACCCAAACCACTCACCTAA 59.928 47.826 0.00 0.00 0.00 2.69
122 123 2.635915 CACTACCCAAACCACTCACCTA 59.364 50.000 0.00 0.00 0.00 3.08
123 124 1.420138 CACTACCCAAACCACTCACCT 59.580 52.381 0.00 0.00 0.00 4.00
124 125 1.544759 CCACTACCCAAACCACTCACC 60.545 57.143 0.00 0.00 0.00 4.02
125 126 1.892209 CCACTACCCAAACCACTCAC 58.108 55.000 0.00 0.00 0.00 3.51
126 127 0.109723 GCCACTACCCAAACCACTCA 59.890 55.000 0.00 0.00 0.00 3.41
127 128 0.608308 GGCCACTACCCAAACCACTC 60.608 60.000 0.00 0.00 0.00 3.51
128 129 1.458927 GGCCACTACCCAAACCACT 59.541 57.895 0.00 0.00 0.00 4.00
129 130 4.090723 GGCCACTACCCAAACCAC 57.909 61.111 0.00 0.00 0.00 4.16
137 138 0.546598 ATGCTAGTTGGGCCACTACC 59.453 55.000 5.23 3.74 0.00 3.18
138 139 1.475213 GGATGCTAGTTGGGCCACTAC 60.475 57.143 5.23 2.01 0.00 2.73
139 140 0.837272 GGATGCTAGTTGGGCCACTA 59.163 55.000 5.23 10.59 0.00 2.74
140 141 1.609783 GGATGCTAGTTGGGCCACT 59.390 57.895 5.23 9.91 0.00 4.00
141 142 1.453928 GGGATGCTAGTTGGGCCAC 60.454 63.158 5.23 1.08 0.00 5.01
142 143 1.214305 AAGGGATGCTAGTTGGGCCA 61.214 55.000 0.00 0.00 0.00 5.36
143 144 0.466372 GAAGGGATGCTAGTTGGGCC 60.466 60.000 0.00 0.00 0.00 5.80
144 145 0.255890 TGAAGGGATGCTAGTTGGGC 59.744 55.000 0.00 0.00 0.00 5.36
145 146 2.173356 TGATGAAGGGATGCTAGTTGGG 59.827 50.000 0.00 0.00 0.00 4.12
146 147 3.565764 TGATGAAGGGATGCTAGTTGG 57.434 47.619 0.00 0.00 0.00 3.77
147 148 5.646793 CCATATGATGAAGGGATGCTAGTTG 59.353 44.000 3.65 0.00 0.00 3.16
148 149 5.280882 CCCATATGATGAAGGGATGCTAGTT 60.281 44.000 3.65 0.00 44.30 2.24
149 150 4.226846 CCCATATGATGAAGGGATGCTAGT 59.773 45.833 3.65 0.00 44.30 2.57
150 151 4.226846 ACCCATATGATGAAGGGATGCTAG 59.773 45.833 3.65 0.00 44.30 3.42
151 152 4.178339 ACCCATATGATGAAGGGATGCTA 58.822 43.478 3.65 0.00 44.30 3.49
152 153 2.991713 ACCCATATGATGAAGGGATGCT 59.008 45.455 3.65 0.00 44.30 3.79
153 154 3.446442 ACCCATATGATGAAGGGATGC 57.554 47.619 3.65 0.00 44.30 3.91
154 155 6.013032 ACTCTTACCCATATGATGAAGGGATG 60.013 42.308 3.65 0.00 44.30 3.51
155 156 6.094302 ACTCTTACCCATATGATGAAGGGAT 58.906 40.000 3.65 0.00 44.30 3.85
156 157 5.476983 ACTCTTACCCATATGATGAAGGGA 58.523 41.667 3.65 0.00 44.30 4.20
157 158 5.832539 ACTCTTACCCATATGATGAAGGG 57.167 43.478 3.65 6.54 46.96 3.95
158 159 6.402222 GCTACTCTTACCCATATGATGAAGG 58.598 44.000 3.65 0.00 0.00 3.46
159 160 6.096036 CGCTACTCTTACCCATATGATGAAG 58.904 44.000 3.65 4.40 0.00 3.02
160 161 5.047306 CCGCTACTCTTACCCATATGATGAA 60.047 44.000 3.65 0.00 0.00 2.57
161 162 4.462834 CCGCTACTCTTACCCATATGATGA 59.537 45.833 3.65 0.00 0.00 2.92
162 163 4.748892 CCGCTACTCTTACCCATATGATG 58.251 47.826 3.65 0.00 0.00 3.07
163 164 3.195825 GCCGCTACTCTTACCCATATGAT 59.804 47.826 3.65 0.00 0.00 2.45
164 165 2.561419 GCCGCTACTCTTACCCATATGA 59.439 50.000 3.65 0.00 0.00 2.15
165 166 2.299013 TGCCGCTACTCTTACCCATATG 59.701 50.000 0.00 0.00 0.00 1.78
166 167 2.605257 TGCCGCTACTCTTACCCATAT 58.395 47.619 0.00 0.00 0.00 1.78
167 168 2.076207 TGCCGCTACTCTTACCCATA 57.924 50.000 0.00 0.00 0.00 2.74
168 169 1.424638 ATGCCGCTACTCTTACCCAT 58.575 50.000 0.00 0.00 0.00 4.00
169 170 2.076207 TATGCCGCTACTCTTACCCA 57.924 50.000 0.00 0.00 0.00 4.51
170 171 2.299297 ACATATGCCGCTACTCTTACCC 59.701 50.000 1.58 0.00 0.00 3.69
171 172 3.662247 ACATATGCCGCTACTCTTACC 57.338 47.619 1.58 0.00 0.00 2.85
172 173 4.974103 CAACATATGCCGCTACTCTTAC 57.026 45.455 1.58 0.00 0.00 2.34
185 186 1.875514 CCACCATCTCGGCAACATATG 59.124 52.381 0.00 0.00 39.03 1.78
186 187 1.768275 TCCACCATCTCGGCAACATAT 59.232 47.619 0.00 0.00 39.03 1.78
187 188 1.199615 TCCACCATCTCGGCAACATA 58.800 50.000 0.00 0.00 39.03 2.29
188 189 0.548031 ATCCACCATCTCGGCAACAT 59.452 50.000 0.00 0.00 39.03 2.71
189 190 0.327924 AATCCACCATCTCGGCAACA 59.672 50.000 0.00 0.00 39.03 3.33
190 191 1.017387 GAATCCACCATCTCGGCAAC 58.983 55.000 0.00 0.00 39.03 4.17
191 192 0.617935 TGAATCCACCATCTCGGCAA 59.382 50.000 0.00 0.00 39.03 4.52
192 193 0.178767 CTGAATCCACCATCTCGGCA 59.821 55.000 0.00 0.00 39.03 5.69
193 194 0.533755 CCTGAATCCACCATCTCGGC 60.534 60.000 0.00 0.00 39.03 5.54
194 195 1.123077 TCCTGAATCCACCATCTCGG 58.877 55.000 0.00 0.00 42.50 4.63
195 196 2.988010 TTCCTGAATCCACCATCTCG 57.012 50.000 0.00 0.00 0.00 4.04
196 197 6.302269 ACAATATTCCTGAATCCACCATCTC 58.698 40.000 0.00 0.00 32.50 2.75
197 198 6.102321 AGACAATATTCCTGAATCCACCATCT 59.898 38.462 0.00 0.00 32.50 2.90
198 199 6.206243 CAGACAATATTCCTGAATCCACCATC 59.794 42.308 8.11 0.00 32.50 3.51
199 200 6.066690 CAGACAATATTCCTGAATCCACCAT 58.933 40.000 8.11 0.00 32.50 3.55
200 201 5.044919 ACAGACAATATTCCTGAATCCACCA 60.045 40.000 16.93 0.00 32.50 4.17
201 202 5.440610 ACAGACAATATTCCTGAATCCACC 58.559 41.667 16.93 0.00 32.50 4.61
202 203 8.682936 ATTACAGACAATATTCCTGAATCCAC 57.317 34.615 16.93 0.00 32.50 4.02
203 204 9.778741 GTATTACAGACAATATTCCTGAATCCA 57.221 33.333 16.93 2.13 32.50 3.41
218 219 8.627403 CGAGGACCTTATAAAGTATTACAGACA 58.373 37.037 0.00 0.00 0.00 3.41
219 220 8.844244 TCGAGGACCTTATAAAGTATTACAGAC 58.156 37.037 0.00 0.00 0.00 3.51
220 221 8.985315 TCGAGGACCTTATAAAGTATTACAGA 57.015 34.615 0.00 0.00 0.00 3.41
221 222 9.064706 TCTCGAGGACCTTATAAAGTATTACAG 57.935 37.037 13.56 0.00 0.00 2.74
222 223 8.985315 TCTCGAGGACCTTATAAAGTATTACA 57.015 34.615 13.56 0.00 0.00 2.41
236 237 9.765795 CACTTTATTAATTATTCTCGAGGACCT 57.234 33.333 13.56 0.00 0.00 3.85
237 238 8.989980 CCACTTTATTAATTATTCTCGAGGACC 58.010 37.037 13.56 0.00 0.00 4.46
238 239 9.543783 ACCACTTTATTAATTATTCTCGAGGAC 57.456 33.333 13.56 0.00 0.00 3.85
239 240 9.760077 GACCACTTTATTAATTATTCTCGAGGA 57.240 33.333 13.56 3.44 0.00 3.71
240 241 8.700644 CGACCACTTTATTAATTATTCTCGAGG 58.299 37.037 13.56 0.00 0.00 4.63
241 242 9.245962 ACGACCACTTTATTAATTATTCTCGAG 57.754 33.333 5.93 5.93 0.00 4.04
249 250 9.772973 AGATGCATACGACCACTTTATTAATTA 57.227 29.630 0.00 0.00 0.00 1.40
250 251 8.677148 AGATGCATACGACCACTTTATTAATT 57.323 30.769 0.00 0.00 0.00 1.40
251 252 7.387948 GGAGATGCATACGACCACTTTATTAAT 59.612 37.037 0.00 0.00 0.00 1.40
252 253 6.704493 GGAGATGCATACGACCACTTTATTAA 59.296 38.462 0.00 0.00 0.00 1.40
253 254 6.220930 GGAGATGCATACGACCACTTTATTA 58.779 40.000 0.00 0.00 0.00 0.98
254 255 5.057149 GGAGATGCATACGACCACTTTATT 58.943 41.667 0.00 0.00 0.00 1.40
255 256 4.503296 GGGAGATGCATACGACCACTTTAT 60.503 45.833 0.00 0.00 0.00 1.40
256 257 3.181469 GGGAGATGCATACGACCACTTTA 60.181 47.826 0.00 0.00 0.00 1.85
257 258 2.420129 GGGAGATGCATACGACCACTTT 60.420 50.000 0.00 0.00 0.00 2.66
258 259 1.139058 GGGAGATGCATACGACCACTT 59.861 52.381 0.00 0.00 0.00 3.16
259 260 0.753262 GGGAGATGCATACGACCACT 59.247 55.000 0.00 0.00 0.00 4.00
260 261 0.464036 TGGGAGATGCATACGACCAC 59.536 55.000 0.00 0.00 0.00 4.16
261 262 0.752658 CTGGGAGATGCATACGACCA 59.247 55.000 0.00 5.45 0.00 4.02
262 263 1.040646 TCTGGGAGATGCATACGACC 58.959 55.000 0.00 0.30 0.00 4.79
263 264 2.681706 CATCTGGGAGATGCATACGAC 58.318 52.381 0.00 0.00 44.69 4.34
272 273 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
273 274 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
274 275 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
275 276 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
276 277 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
277 278 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
278 279 3.457625 CTCCCGGCCTCTGCATCTG 62.458 68.421 0.00 0.00 40.13 2.90
279 280 3.160047 CTCCCGGCCTCTGCATCT 61.160 66.667 0.00 0.00 40.13 2.90
280 281 3.453070 GACTCCCGGCCTCTGCATC 62.453 68.421 0.00 0.00 40.13 3.91
281 282 3.474570 GACTCCCGGCCTCTGCAT 61.475 66.667 0.00 0.00 40.13 3.96
283 284 3.453070 GATGACTCCCGGCCTCTGC 62.453 68.421 0.00 0.00 0.00 4.26
284 285 1.333636 AAGATGACTCCCGGCCTCTG 61.334 60.000 0.00 0.00 0.00 3.35
285 286 1.002274 AAGATGACTCCCGGCCTCT 59.998 57.895 0.00 0.00 0.00 3.69
286 287 1.330655 TGAAGATGACTCCCGGCCTC 61.331 60.000 0.00 0.00 0.00 4.70
287 288 0.692419 ATGAAGATGACTCCCGGCCT 60.692 55.000 0.00 0.00 0.00 5.19
288 289 0.181350 AATGAAGATGACTCCCGGCC 59.819 55.000 0.00 0.00 0.00 6.13
289 290 2.044123 AAATGAAGATGACTCCCGGC 57.956 50.000 0.00 0.00 0.00 6.13
290 291 3.878778 AGAAAATGAAGATGACTCCCGG 58.121 45.455 0.00 0.00 0.00 5.73
291 292 6.985188 TTTAGAAAATGAAGATGACTCCCG 57.015 37.500 0.00 0.00 0.00 5.14
318 319 2.495669 GAGTAGACAGCTCTGCTTCCTT 59.504 50.000 0.00 0.00 39.41 3.36
393 394 2.235155 GGACCTCTTCACTTCTCCCTTC 59.765 54.545 0.00 0.00 0.00 3.46
394 395 2.261729 GGACCTCTTCACTTCTCCCTT 58.738 52.381 0.00 0.00 0.00 3.95
395 396 1.150135 TGGACCTCTTCACTTCTCCCT 59.850 52.381 0.00 0.00 0.00 4.20
396 397 1.276705 GTGGACCTCTTCACTTCTCCC 59.723 57.143 0.00 0.00 0.00 4.30
397 398 1.971357 TGTGGACCTCTTCACTTCTCC 59.029 52.381 0.00 0.00 35.15 3.71
398 399 2.611722 GCTGTGGACCTCTTCACTTCTC 60.612 54.545 0.00 0.00 35.15 2.87
399 400 1.346068 GCTGTGGACCTCTTCACTTCT 59.654 52.381 0.00 0.00 35.15 2.85
400 401 1.802069 GCTGTGGACCTCTTCACTTC 58.198 55.000 0.00 0.00 35.15 3.01
401 402 0.034059 CGCTGTGGACCTCTTCACTT 59.966 55.000 0.00 0.00 35.15 3.16
402 403 1.668294 CGCTGTGGACCTCTTCACT 59.332 57.895 0.00 0.00 35.15 3.41
403 404 2.029844 GCGCTGTGGACCTCTTCAC 61.030 63.158 0.00 0.00 34.71 3.18
404 405 2.343758 GCGCTGTGGACCTCTTCA 59.656 61.111 0.00 0.00 0.00 3.02
452 453 2.879933 CACTCGCGCTGCAGAGAG 60.880 66.667 22.55 23.23 42.52 3.20
550 551 4.807039 TAAACCGGCTCGCGCTCC 62.807 66.667 5.56 3.44 36.09 4.70
651 920 9.786105 ATTTTATGTTTCAAAGCCAAAAGTTTG 57.214 25.926 0.00 0.00 37.90 2.93
670 939 6.715347 AGTTTAGGCCTGGCTTATTTTATG 57.285 37.500 17.99 0.00 0.00 1.90
674 943 6.673583 AGATTAGTTTAGGCCTGGCTTATTT 58.326 36.000 17.99 6.56 0.00 1.40
680 949 2.807108 CGGAGATTAGTTTAGGCCTGGC 60.807 54.545 17.99 11.05 0.00 4.85
844 1113 1.119684 GGGGAGAAGAGAGGAGAAGC 58.880 60.000 0.00 0.00 0.00 3.86
851 1125 2.354401 TGCTGCGGGGAGAAGAGAG 61.354 63.158 0.00 0.00 0.00 3.20
866 1140 1.294780 GAGGTAGTGCTGCTGTGCT 59.705 57.895 0.00 0.00 0.00 4.40
892 1166 5.118286 AGATTTTGGTTTGGTTTGCTTGAG 58.882 37.500 0.00 0.00 0.00 3.02
1178 1488 2.637521 ATGCATGCATGGATCGGAC 58.362 52.632 31.74 9.34 33.26 4.79
1201 1511 2.620585 AGCTGGCACTTGAAAGAAAGAC 59.379 45.455 0.00 0.00 0.00 3.01
1203 1513 3.817647 AGTAGCTGGCACTTGAAAGAAAG 59.182 43.478 0.00 0.00 0.00 2.62
1204 1514 3.815401 GAGTAGCTGGCACTTGAAAGAAA 59.185 43.478 0.00 0.00 0.00 2.52
1292 1611 3.705051 TCCCCCTCCATGATATACGTAC 58.295 50.000 0.00 0.00 0.00 3.67
1293 1612 4.350245 CTTCCCCCTCCATGATATACGTA 58.650 47.826 0.00 0.00 0.00 3.57
1294 1613 3.173965 CTTCCCCCTCCATGATATACGT 58.826 50.000 0.00 0.00 0.00 3.57
1295 1614 2.093447 GCTTCCCCCTCCATGATATACG 60.093 54.545 0.00 0.00 0.00 3.06
1296 1615 2.912956 TGCTTCCCCCTCCATGATATAC 59.087 50.000 0.00 0.00 0.00 1.47
1297 1616 3.290039 TGCTTCCCCCTCCATGATATA 57.710 47.619 0.00 0.00 0.00 0.86
1298 1617 2.108952 GTTGCTTCCCCCTCCATGATAT 59.891 50.000 0.00 0.00 0.00 1.63
1320 1643 0.390340 TGATGCAGAGCGACAGGTTC 60.390 55.000 0.00 0.00 0.00 3.62
1404 1727 8.328758 CCCTCTATCTCTCTCATTCACTATAGT 58.671 40.741 0.00 0.00 0.00 2.12
1433 1767 5.084519 ACCACTAAAAATTCTTCTTCCCCC 58.915 41.667 0.00 0.00 0.00 5.40
1443 1777 9.529325 GGGAATAATGCTAACCACTAAAAATTC 57.471 33.333 0.00 0.00 0.00 2.17
1444 1778 9.041354 TGGGAATAATGCTAACCACTAAAAATT 57.959 29.630 0.00 0.00 0.00 1.82
1445 1779 8.602472 TGGGAATAATGCTAACCACTAAAAAT 57.398 30.769 0.00 0.00 0.00 1.82
1487 1821 9.434275 TGATGTAATGGAGGAGAGATTAGTAAA 57.566 33.333 0.00 0.00 0.00 2.01
1582 1924 5.836347 TCACATCAGTGCTAGCTACTAATG 58.164 41.667 20.19 20.19 45.49 1.90
1583 1925 6.041409 ACATCACATCAGTGCTAGCTACTAAT 59.959 38.462 17.23 6.70 45.49 1.73
1623 1965 4.098349 GCAAGGCAAGATTAATCACATGGA 59.902 41.667 17.56 0.00 0.00 3.41
1624 1966 4.365723 GCAAGGCAAGATTAATCACATGG 58.634 43.478 17.56 3.49 0.00 3.66
1625 1967 4.039703 CGCAAGGCAAGATTAATCACATG 58.960 43.478 17.56 13.26 0.00 3.21
1626 1968 3.696051 ACGCAAGGCAAGATTAATCACAT 59.304 39.130 17.56 1.74 46.39 3.21
1627 1969 3.081061 ACGCAAGGCAAGATTAATCACA 58.919 40.909 17.56 0.00 46.39 3.58
1647 1989 1.798813 CTTCAGACCTGGTACGCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
2015 2369 3.791539 TCGTAGAGAGCGTCGTCC 58.208 61.111 0.00 0.00 0.00 4.79
2039 2393 2.780094 CGCATCGACAGGGAGCTCT 61.780 63.158 14.64 0.00 0.00 4.09
2390 2744 4.680237 TCCACGTCCAAGCTGCCG 62.680 66.667 0.00 0.00 0.00 5.69
2399 2753 1.448540 CCAGATGCTGTCCACGTCC 60.449 63.158 0.00 0.00 0.00 4.79
2638 3001 1.000283 ACAGAACTGGAGCAGAAGACG 60.000 52.381 6.76 0.00 35.18 4.18
2640 3003 1.270518 GCACAGAACTGGAGCAGAAGA 60.271 52.381 13.57 0.00 36.30 2.87
2667 3032 8.913487 AGTAATAATAAATTAACACGGGAGGG 57.087 34.615 0.00 0.00 40.95 4.30
2711 3076 4.682860 TGCTTCTGCTACACTTTTACGTAC 59.317 41.667 0.00 0.00 40.48 3.67
2771 3139 9.436957 GAATGAGTAAGATTAAACAGAACCTCA 57.563 33.333 0.00 0.00 0.00 3.86
3018 4407 1.327156 CAAACAACCGCAGCCAAAAAG 59.673 47.619 0.00 0.00 0.00 2.27
3019 4408 1.363744 CAAACAACCGCAGCCAAAAA 58.636 45.000 0.00 0.00 0.00 1.94
3024 4413 0.456653 CATAGCAAACAACCGCAGCC 60.457 55.000 0.00 0.00 0.00 4.85
3224 4846 3.357203 ACTCAATCCGCTCTCTAGTGAA 58.643 45.455 0.00 0.00 35.06 3.18
3227 4849 2.882137 GCTACTCAATCCGCTCTCTAGT 59.118 50.000 0.00 0.00 0.00 2.57
3228 4850 2.881513 TGCTACTCAATCCGCTCTCTAG 59.118 50.000 0.00 0.00 0.00 2.43
3229 4851 2.932261 TGCTACTCAATCCGCTCTCTA 58.068 47.619 0.00 0.00 0.00 2.43
3427 5065 3.547468 CGTGCACTTGGTTTTCTTTTCTG 59.453 43.478 16.19 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.