Multiple sequence alignment - TraesCS4B01G177000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G177000 chr4B 100.000 7326 0 0 1 7326 387499389 387506714 0.000000e+00 13529.0
1 TraesCS4B01G177000 chr4B 94.937 158 8 0 384 541 648363593 648363436 1.580000e-61 248.0
2 TraesCS4B01G177000 chr4B 91.549 71 6 0 3438 3508 604620647 604620717 1.680000e-16 99.0
3 TraesCS4B01G177000 chr4D 95.978 4823 127 21 542 5322 310099021 310103818 0.000000e+00 7769.0
4 TraesCS4B01G177000 chr4D 92.857 518 19 5 5416 5932 310103817 310104317 0.000000e+00 736.0
5 TraesCS4B01G177000 chr4D 84.916 716 34 39 5959 6632 310104297 310104980 0.000000e+00 656.0
6 TraesCS4B01G177000 chr4D 86.946 406 25 2 1 378 310098615 310099020 1.460000e-116 431.0
7 TraesCS4B01G177000 chr4D 87.162 296 15 9 6737 7018 310105079 310105365 1.530000e-81 315.0
8 TraesCS4B01G177000 chr4D 84.498 329 18 10 7000 7296 310105379 310105706 2.000000e-75 294.0
9 TraesCS4B01G177000 chr4D 93.694 111 6 1 5308 5418 72678667 72678776 1.640000e-36 165.0
10 TraesCS4B01G177000 chr4A 95.899 3706 96 14 1632 5322 164635652 164631988 0.000000e+00 5951.0
11 TraesCS4B01G177000 chr4A 94.929 848 16 7 763 1591 164636505 164635666 0.000000e+00 1303.0
12 TraesCS4B01G177000 chr4A 87.361 1076 62 29 5959 7001 164631504 164630470 0.000000e+00 1166.0
13 TraesCS4B01G177000 chr4A 92.293 519 23 9 5416 5931 164631989 164631485 0.000000e+00 721.0
14 TraesCS4B01G177000 chr4A 82.787 244 18 13 7000 7229 164630426 164630193 5.800000e-46 196.0
15 TraesCS4B01G177000 chr4A 93.636 110 6 1 5311 5420 389449715 389449607 5.880000e-36 163.0
16 TraesCS4B01G177000 chr4A 83.459 133 19 3 540 671 17647382 17647252 3.590000e-23 121.0
17 TraesCS4B01G177000 chr4A 91.549 71 6 0 3438 3508 719832931 719832861 1.680000e-16 99.0
18 TraesCS4B01G177000 chr7B 91.268 355 28 3 2 354 605423593 605423946 1.430000e-131 481.0
19 TraesCS4B01G177000 chr7B 87.179 156 19 1 387 541 198966016 198966171 7.550000e-40 176.0
20 TraesCS4B01G177000 chr7B 80.451 133 23 3 541 672 726252422 726252552 1.680000e-16 99.0
21 TraesCS4B01G177000 chr7B 84.043 94 11 2 3419 3508 373060113 373060206 3.640000e-13 87.9
22 TraesCS4B01G177000 chr2D 87.126 334 36 5 26 354 626768972 626769303 8.980000e-99 372.0
23 TraesCS4B01G177000 chr2D 83.562 146 22 2 1015 1160 410424207 410424064 1.280000e-27 135.0
24 TraesCS4B01G177000 chr2D 100.000 28 0 0 3382 3409 572049221 572049248 1.300000e-02 52.8
25 TraesCS4B01G177000 chr5A 92.411 224 13 3 136 357 673086180 673085959 4.270000e-82 316.0
26 TraesCS4B01G177000 chr5A 94.643 56 3 0 1 56 673086234 673086179 3.640000e-13 87.9
27 TraesCS4B01G177000 chr1B 89.352 216 21 2 140 353 39953782 39953567 3.370000e-68 270.0
28 TraesCS4B01G177000 chr1B 85.271 129 19 0 14 142 39966415 39966287 4.610000e-27 134.0
29 TraesCS4B01G177000 chr5B 96.203 158 6 0 382 539 622890885 622890728 7.290000e-65 259.0
30 TraesCS4B01G177000 chr3D 94.904 157 8 0 383 539 71972752 71972908 5.680000e-61 246.0
31 TraesCS4B01G177000 chr3D 95.283 106 5 0 5320 5425 19269717 19269822 1.260000e-37 169.0
32 TraesCS4B01G177000 chr3D 92.473 93 7 0 540 632 300587653 300587561 4.610000e-27 134.0
33 TraesCS4B01G177000 chr3D 87.850 107 12 1 540 645 397364864 397364758 2.780000e-24 124.0
34 TraesCS4B01G177000 chr3D 85.455 110 15 1 543 651 316500327 316500436 6.010000e-21 113.0
35 TraesCS4B01G177000 chr6A 93.038 158 11 0 384 541 327762684 327762527 1.590000e-56 231.0
36 TraesCS4B01G177000 chr6A 85.802 162 23 0 382 543 1740968 1740807 9.770000e-39 172.0
37 TraesCS4B01G177000 chr6A 78.182 110 15 5 3447 3549 378200056 378200163 2.210000e-05 62.1
38 TraesCS4B01G177000 chr2B 88.000 175 19 2 374 547 671771769 671771942 9.630000e-49 206.0
39 TraesCS4B01G177000 chr2B 90.506 158 9 1 382 539 13911112 13911263 3.470000e-48 204.0
40 TraesCS4B01G177000 chr2B 87.261 157 20 0 383 539 41070507 41070351 5.840000e-41 180.0
41 TraesCS4B01G177000 chr2B 97.980 99 2 0 5321 5419 208229169 208229071 9.770000e-39 172.0
42 TraesCS4B01G177000 chr2B 95.283 106 5 0 5317 5422 656333083 656332978 1.260000e-37 169.0
43 TraesCS4B01G177000 chr2B 84.848 132 20 0 1015 1146 485046026 485045895 4.610000e-27 134.0
44 TraesCS4B01G177000 chr2B 93.617 47 2 1 1588 1633 46881623 46881577 1.320000e-07 69.4
45 TraesCS4B01G177000 chr2B 89.091 55 4 2 1585 1639 211128398 211128346 4.740000e-07 67.6
46 TraesCS4B01G177000 chr2B 93.023 43 3 0 1585 1627 687582164 687582122 6.140000e-06 63.9
47 TraesCS4B01G177000 chr2A 97.959 98 2 0 5321 5418 165759825 165759728 3.510000e-38 171.0
48 TraesCS4B01G177000 chr2A 83.562 146 22 2 1015 1160 578601967 578602110 1.280000e-27 135.0
49 TraesCS4B01G177000 chr2A 83.582 134 19 3 540 672 747004530 747004399 9.980000e-24 122.0
50 TraesCS4B01G177000 chr2A 92.958 71 5 0 3438 3508 497438960 497439030 3.620000e-18 104.0
51 TraesCS4B01G177000 chr2A 97.500 40 1 0 1588 1627 773279375 773279336 1.320000e-07 69.4
52 TraesCS4B01G177000 chrUn 93.636 110 6 1 5313 5421 305213237 305213128 5.880000e-36 163.0
53 TraesCS4B01G177000 chrUn 90.141 71 7 0 3438 3508 375161205 375161135 7.830000e-15 93.5
54 TraesCS4B01G177000 chr5D 89.764 127 8 4 5299 5420 200330578 200330452 2.740000e-34 158.0
55 TraesCS4B01G177000 chr5D 100.000 30 0 0 3382 3411 329505354 329505383 1.000000e-03 56.5
56 TraesCS4B01G177000 chr5D 100.000 29 0 0 3383 3411 249098368 249098396 4.000000e-03 54.7
57 TraesCS4B01G177000 chr3B 91.379 116 9 1 5310 5425 177503882 177503768 2.740000e-34 158.0
58 TraesCS4B01G177000 chr3B 91.071 56 4 1 1588 1643 128947781 128947727 2.830000e-09 75.0
59 TraesCS4B01G177000 chr7A 88.172 93 11 0 540 632 175875645 175875553 2.160000e-20 111.0
60 TraesCS4B01G177000 chr7A 91.549 71 6 0 3438 3508 184135869 184135939 1.680000e-16 99.0
61 TraesCS4B01G177000 chr3A 84.071 113 17 1 540 651 244556424 244556312 2.790000e-19 108.0
62 TraesCS4B01G177000 chr3A 82.051 117 12 5 3438 3548 75571550 75571663 2.810000e-14 91.6
63 TraesCS4B01G177000 chr7D 95.652 46 2 0 1580 1625 13329105 13329060 2.830000e-09 75.0
64 TraesCS4B01G177000 chr6D 91.304 46 4 0 1581 1626 88833993 88834038 6.140000e-06 63.9
65 TraesCS4B01G177000 chr6D 92.683 41 3 0 1587 1627 27723611 27723571 7.940000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G177000 chr4B 387499389 387506714 7325 False 13529.000000 13529 100.000000 1 7326 1 chr4B.!!$F1 7325
1 TraesCS4B01G177000 chr4D 310098615 310105706 7091 False 1700.166667 7769 88.726167 1 7296 6 chr4D.!!$F2 7295
2 TraesCS4B01G177000 chr4A 164630193 164636505 6312 True 1867.400000 5951 90.653800 763 7229 5 chr4A.!!$R4 6466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 561 0.179000 ATCCTTACAAGGCAGCTCCG 59.821 55.000 2.93 0.00 46.06 4.63 F
549 578 0.179073 CCGTCCCTGCTTAGACCATG 60.179 60.000 0.00 0.00 0.00 3.66 F
550 579 0.824109 CGTCCCTGCTTAGACCATGA 59.176 55.000 0.00 0.00 0.00 3.07 F
1119 1151 0.897863 CCTCCCTCGCTATCCTCCTG 60.898 65.000 0.00 0.00 0.00 3.86 F
1846 1911 1.638589 TGTAAAGGGGGATGGTCTTGG 59.361 52.381 0.00 0.00 0.00 3.61 F
3484 3564 1.632018 TAGGGGTAGGGTGTGCATGC 61.632 60.000 11.82 11.82 0.00 4.06 F
4177 4265 0.548682 ATGCACTCCTTGGGTCCTCT 60.549 55.000 0.00 0.00 0.00 3.69 F
5284 5373 0.395862 TTTCCACACGCCTCCCAAAA 60.396 50.000 0.00 0.00 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2411 1.542492 AGGTTCGTATGACAGACCGT 58.458 50.000 0.00 0.0 0.00 4.83 R
2398 2471 2.035442 GTCTGGGCTTTCACGGCTC 61.035 63.158 0.00 0.0 0.00 4.70 R
2505 2578 2.050144 ACAAGAGAACAGGGAAGAGCA 58.950 47.619 0.00 0.0 0.00 4.26 R
2868 2942 4.923893 TGCAATTGATCTTGAATTAGCCG 58.076 39.130 10.34 0.0 0.00 5.52 R
3609 3697 0.179018 AGTCACTTCAAGCCACCACC 60.179 55.000 0.00 0.0 0.00 4.61 R
4285 4373 0.171903 ACGTATGTCGCAGGTACACC 59.828 55.000 0.00 0.0 44.19 4.16 R
6010 6103 1.403679 CAAACGAAAAGTGCCACCTCA 59.596 47.619 0.00 0.0 0.00 3.86 R
6507 6633 0.229753 GCGATCCGATTGCTTACACG 59.770 55.000 12.73 0.0 36.71 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.018913 GCACATGAATGAGAGAAGACATACAG 60.019 42.308 0.00 0.00 0.00 2.74
60 61 1.827399 GAGACCGCAAGAACCAGGGA 61.827 60.000 0.00 0.00 43.02 4.20
76 77 5.600749 ACCAGGGAAAGAGGATTAGTAAGA 58.399 41.667 0.00 0.00 0.00 2.10
83 84 7.064229 GGAAAGAGGATTAGTAAGAGAGGAGA 58.936 42.308 0.00 0.00 0.00 3.71
86 87 6.010219 AGAGGATTAGTAAGAGAGGAGATGC 58.990 44.000 0.00 0.00 0.00 3.91
100 101 0.472543 AGATGCGGGATGGAGATGGA 60.473 55.000 0.00 0.00 0.00 3.41
103 104 1.070445 GCGGGATGGAGATGGACTG 59.930 63.158 0.00 0.00 0.00 3.51
105 106 0.760567 CGGGATGGAGATGGACTGGA 60.761 60.000 0.00 0.00 0.00 3.86
122 123 3.514309 ACTGGAGGCAAAACGTAGACTAT 59.486 43.478 0.00 0.00 0.00 2.12
125 126 4.020928 TGGAGGCAAAACGTAGACTATTCA 60.021 41.667 0.00 0.00 0.00 2.57
147 148 5.357878 TCATGTTGATTGCCTTTAGACATCC 59.642 40.000 0.00 0.00 0.00 3.51
180 181 4.379339 ACAAGAGAATAACTCCTCTCGC 57.621 45.455 0.00 0.00 45.96 5.03
213 214 4.130118 GGCCATGGTACTAATTGACTCTG 58.870 47.826 14.67 0.00 0.00 3.35
226 227 7.770897 ACTAATTGACTCTGGAATACAATGTCC 59.229 37.037 0.00 0.00 33.26 4.02
267 296 6.888105 TGCTGAGAAATGAATATACCTGACA 58.112 36.000 0.00 0.00 0.00 3.58
331 360 1.202582 GATATAGACCTCGCGTGCCAT 59.797 52.381 5.77 0.00 0.00 4.40
360 389 7.975058 TGTTCACTCGTGATTTATCGGTTATTA 59.025 33.333 0.00 0.00 39.64 0.98
383 412 9.930158 ATTATATGCTTTAGTTCCTTAAACCCA 57.070 29.630 0.00 0.00 38.76 4.51
384 413 7.881775 ATATGCTTTAGTTCCTTAAACCCAG 57.118 36.000 0.00 0.00 38.76 4.45
385 414 4.403734 TGCTTTAGTTCCTTAAACCCAGG 58.596 43.478 0.00 0.00 38.76 4.45
386 415 3.762288 GCTTTAGTTCCTTAAACCCAGGG 59.238 47.826 2.85 2.85 38.76 4.45
387 416 4.507869 GCTTTAGTTCCTTAAACCCAGGGA 60.508 45.833 14.54 0.00 38.76 4.20
388 417 4.645863 TTAGTTCCTTAAACCCAGGGAC 57.354 45.455 14.54 0.00 40.02 4.46
389 418 1.350019 AGTTCCTTAAACCCAGGGACG 59.650 52.381 14.54 0.00 44.07 4.79
390 419 1.348696 GTTCCTTAAACCCAGGGACGA 59.651 52.381 14.54 0.00 29.75 4.20
391 420 1.732117 TCCTTAAACCCAGGGACGAA 58.268 50.000 14.54 1.27 31.50 3.85
392 421 1.626825 TCCTTAAACCCAGGGACGAAG 59.373 52.381 14.54 11.42 31.50 3.79
393 422 1.450025 CTTAAACCCAGGGACGAAGC 58.550 55.000 14.54 0.00 0.00 3.86
394 423 1.003233 CTTAAACCCAGGGACGAAGCT 59.997 52.381 14.54 0.00 0.00 3.74
395 424 1.941377 TAAACCCAGGGACGAAGCTA 58.059 50.000 14.54 0.00 0.00 3.32
396 425 0.613777 AAACCCAGGGACGAAGCTAG 59.386 55.000 14.54 0.00 0.00 3.42
397 426 0.252103 AACCCAGGGACGAAGCTAGA 60.252 55.000 14.54 0.00 0.00 2.43
398 427 0.252103 ACCCAGGGACGAAGCTAGAA 60.252 55.000 14.54 0.00 0.00 2.10
399 428 0.902531 CCCAGGGACGAAGCTAGAAA 59.097 55.000 0.00 0.00 0.00 2.52
400 429 1.278127 CCCAGGGACGAAGCTAGAAAA 59.722 52.381 0.00 0.00 0.00 2.29
401 430 2.290071 CCCAGGGACGAAGCTAGAAAAA 60.290 50.000 0.00 0.00 0.00 1.94
422 451 6.994421 AAAAAGTTAAATGGGGTCATGTCT 57.006 33.333 0.00 0.00 33.18 3.41
424 453 8.664669 AAAAAGTTAAATGGGGTCATGTCTAT 57.335 30.769 0.00 0.00 33.18 1.98
425 454 7.645058 AAAGTTAAATGGGGTCATGTCTATG 57.355 36.000 0.00 0.00 33.18 2.23
426 455 6.575244 AGTTAAATGGGGTCATGTCTATGA 57.425 37.500 0.00 0.00 40.92 2.15
435 464 2.832838 TCATGTCTATGACAGTGGGGT 58.167 47.619 6.55 0.00 46.04 4.95
436 465 2.766263 TCATGTCTATGACAGTGGGGTC 59.234 50.000 6.55 0.00 46.04 4.46
445 474 4.927267 TGACAGTGGGGTCATCTTTTAT 57.073 40.909 0.00 0.00 42.56 1.40
446 475 5.255397 TGACAGTGGGGTCATCTTTTATT 57.745 39.130 0.00 0.00 42.56 1.40
447 476 6.381498 TGACAGTGGGGTCATCTTTTATTA 57.619 37.500 0.00 0.00 42.56 0.98
448 477 6.785076 TGACAGTGGGGTCATCTTTTATTAA 58.215 36.000 0.00 0.00 42.56 1.40
449 478 7.410174 TGACAGTGGGGTCATCTTTTATTAAT 58.590 34.615 0.00 0.00 42.56 1.40
450 479 7.339212 TGACAGTGGGGTCATCTTTTATTAATG 59.661 37.037 0.00 0.00 42.56 1.90
451 480 7.410174 ACAGTGGGGTCATCTTTTATTAATGA 58.590 34.615 0.00 0.00 0.00 2.57
452 481 7.893302 ACAGTGGGGTCATCTTTTATTAATGAA 59.107 33.333 0.00 0.00 31.61 2.57
453 482 8.917088 CAGTGGGGTCATCTTTTATTAATGAAT 58.083 33.333 0.00 0.00 31.61 2.57
486 515 8.870075 AGTACTTAATTTCTGAAGGATTTGCT 57.130 30.769 0.00 0.00 0.00 3.91
487 516 8.734386 AGTACTTAATTTCTGAAGGATTTGCTG 58.266 33.333 0.00 0.00 0.00 4.41
488 517 7.765695 ACTTAATTTCTGAAGGATTTGCTGA 57.234 32.000 0.00 0.00 0.00 4.26
489 518 8.358582 ACTTAATTTCTGAAGGATTTGCTGAT 57.641 30.769 0.00 0.00 0.00 2.90
490 519 8.810041 ACTTAATTTCTGAAGGATTTGCTGATT 58.190 29.630 0.00 0.00 0.00 2.57
491 520 9.649167 CTTAATTTCTGAAGGATTTGCTGATTT 57.351 29.630 0.00 0.00 0.00 2.17
492 521 9.643693 TTAATTTCTGAAGGATTTGCTGATTTC 57.356 29.630 0.00 0.00 0.00 2.17
493 522 6.653526 TTTCTGAAGGATTTGCTGATTTCA 57.346 33.333 0.00 0.00 0.00 2.69
494 523 6.845758 TTCTGAAGGATTTGCTGATTTCAT 57.154 33.333 0.00 0.00 0.00 2.57
495 524 6.845758 TCTGAAGGATTTGCTGATTTCATT 57.154 33.333 0.00 0.00 0.00 2.57
496 525 6.627243 TCTGAAGGATTTGCTGATTTCATTG 58.373 36.000 0.00 0.00 0.00 2.82
497 526 5.726397 TGAAGGATTTGCTGATTTCATTGG 58.274 37.500 0.00 0.00 0.00 3.16
498 527 4.748277 AGGATTTGCTGATTTCATTGGG 57.252 40.909 0.00 0.00 0.00 4.12
499 528 3.453353 AGGATTTGCTGATTTCATTGGGG 59.547 43.478 0.00 0.00 0.00 4.96
500 529 3.198417 GGATTTGCTGATTTCATTGGGGT 59.802 43.478 0.00 0.00 0.00 4.95
501 530 4.323715 GGATTTGCTGATTTCATTGGGGTT 60.324 41.667 0.00 0.00 0.00 4.11
502 531 5.104982 GGATTTGCTGATTTCATTGGGGTTA 60.105 40.000 0.00 0.00 0.00 2.85
503 532 5.815233 TTTGCTGATTTCATTGGGGTTAA 57.185 34.783 0.00 0.00 0.00 2.01
504 533 6.371595 TTTGCTGATTTCATTGGGGTTAAT 57.628 33.333 0.00 0.00 0.00 1.40
505 534 6.371595 TTGCTGATTTCATTGGGGTTAATT 57.628 33.333 0.00 0.00 0.00 1.40
506 535 5.732633 TGCTGATTTCATTGGGGTTAATTG 58.267 37.500 0.00 0.00 0.00 2.32
507 536 5.483231 TGCTGATTTCATTGGGGTTAATTGA 59.517 36.000 0.00 0.00 0.00 2.57
508 537 5.812127 GCTGATTTCATTGGGGTTAATTGAC 59.188 40.000 0.00 0.00 0.00 3.18
509 538 6.293004 TGATTTCATTGGGGTTAATTGACC 57.707 37.500 10.91 10.91 39.04 4.02
520 549 5.847111 GGTTAATTGACCCCAATCCTTAC 57.153 43.478 8.20 0.00 41.84 2.34
521 550 5.265989 GGTTAATTGACCCCAATCCTTACA 58.734 41.667 8.20 0.00 41.84 2.41
522 551 5.717654 GGTTAATTGACCCCAATCCTTACAA 59.282 40.000 8.20 0.00 41.84 2.41
523 552 6.127451 GGTTAATTGACCCCAATCCTTACAAG 60.127 42.308 8.20 0.00 41.84 3.16
524 553 3.981212 ATTGACCCCAATCCTTACAAGG 58.019 45.455 1.26 1.26 38.57 3.61
525 554 1.005450 TGACCCCAATCCTTACAAGGC 59.995 52.381 2.93 0.00 46.06 4.35
526 555 1.005450 GACCCCAATCCTTACAAGGCA 59.995 52.381 2.93 0.00 46.06 4.75
527 556 1.005924 ACCCCAATCCTTACAAGGCAG 59.994 52.381 2.93 0.00 46.06 4.85
528 557 1.106285 CCCAATCCTTACAAGGCAGC 58.894 55.000 2.93 0.00 46.06 5.25
529 558 1.341383 CCCAATCCTTACAAGGCAGCT 60.341 52.381 2.93 0.00 46.06 4.24
530 559 2.019984 CCAATCCTTACAAGGCAGCTC 58.980 52.381 2.93 0.00 46.06 4.09
531 560 2.019984 CAATCCTTACAAGGCAGCTCC 58.980 52.381 2.93 0.00 46.06 4.70
532 561 0.179000 ATCCTTACAAGGCAGCTCCG 59.821 55.000 2.93 0.00 46.06 4.63
533 562 1.192146 TCCTTACAAGGCAGCTCCGT 61.192 55.000 2.93 0.00 46.06 4.69
534 563 0.741221 CCTTACAAGGCAGCTCCGTC 60.741 60.000 0.00 0.00 39.76 4.79
535 564 0.741221 CTTACAAGGCAGCTCCGTCC 60.741 60.000 0.00 0.00 40.77 4.79
536 565 2.180159 TTACAAGGCAGCTCCGTCCC 62.180 60.000 0.00 0.00 40.77 4.46
537 566 3.710722 CAAGGCAGCTCCGTCCCT 61.711 66.667 0.00 0.00 40.77 4.20
538 567 3.710722 AAGGCAGCTCCGTCCCTG 61.711 66.667 0.00 0.00 40.77 4.45
542 571 3.298958 CAGCTCCGTCCCTGCTTA 58.701 61.111 0.00 0.00 34.51 3.09
543 572 1.142748 CAGCTCCGTCCCTGCTTAG 59.857 63.158 0.00 0.00 34.51 2.18
544 573 1.000486 AGCTCCGTCCCTGCTTAGA 60.000 57.895 0.00 0.00 32.61 2.10
545 574 1.142097 GCTCCGTCCCTGCTTAGAC 59.858 63.158 0.00 0.00 0.00 2.59
546 575 1.817209 CTCCGTCCCTGCTTAGACC 59.183 63.158 0.00 0.00 0.00 3.85
547 576 0.970937 CTCCGTCCCTGCTTAGACCA 60.971 60.000 0.00 0.00 0.00 4.02
548 577 0.325296 TCCGTCCCTGCTTAGACCAT 60.325 55.000 0.00 0.00 0.00 3.55
549 578 0.179073 CCGTCCCTGCTTAGACCATG 60.179 60.000 0.00 0.00 0.00 3.66
550 579 0.824109 CGTCCCTGCTTAGACCATGA 59.176 55.000 0.00 0.00 0.00 3.07
601 630 2.962859 AGACTTTGGGGTTGCTCAAAT 58.037 42.857 0.00 0.00 33.19 2.32
613 642 5.392380 GGGTTGCTCAAATGTCATCTGTAAG 60.392 44.000 0.00 0.00 0.00 2.34
681 710 1.417890 AGGGGCTAGATTTGGTCATCG 59.582 52.381 0.00 0.00 0.00 3.84
690 719 4.019174 AGATTTGGTCATCGGCTCAATTT 58.981 39.130 0.00 0.00 0.00 1.82
694 723 1.133025 GGTCATCGGCTCAATTTGTGG 59.867 52.381 0.00 0.00 0.00 4.17
708 737 8.034804 GCTCAATTTGTGGGTCATTTTTATAGT 58.965 33.333 0.00 0.00 0.00 2.12
742 771 5.833406 TTTTCTCATCAAGTTCAAGCACA 57.167 34.783 0.00 0.00 0.00 4.57
743 772 4.818534 TTCTCATCAAGTTCAAGCACAC 57.181 40.909 0.00 0.00 0.00 3.82
747 776 1.013596 TCAAGTTCAAGCACACGTGG 58.986 50.000 21.57 10.05 0.00 4.94
906 938 4.469657 ACAAATTGCAGAAACACCCTCTA 58.530 39.130 0.00 0.00 0.00 2.43
1041 1073 4.444081 AGCCTCGACGCCTACCCT 62.444 66.667 2.59 0.00 0.00 4.34
1119 1151 0.897863 CCTCCCTCGCTATCCTCCTG 60.898 65.000 0.00 0.00 0.00 3.86
1204 1237 8.770828 TCCTTTTAATTTCGTTTACTCTGTCAG 58.229 33.333 0.00 0.00 0.00 3.51
1274 1307 5.007234 CCTTCCGATAATTACATGCGTTTCA 59.993 40.000 0.00 0.00 0.00 2.69
1535 1600 4.077300 TCTTGCATCGATTAGATTGGCT 57.923 40.909 0.00 0.00 37.52 4.75
1536 1601 5.213891 TCTTGCATCGATTAGATTGGCTA 57.786 39.130 0.00 0.00 37.52 3.93
1600 1665 4.080687 ACATATAAGCTACTCCCTCCGTC 58.919 47.826 0.00 0.00 0.00 4.79
1615 1680 4.090090 CCTCCGTCCCATGATATAAGAGT 58.910 47.826 0.00 0.00 0.00 3.24
1819 1884 9.701098 CTATGCTCATAAATTAATTTGGCATGT 57.299 29.630 29.50 19.90 36.10 3.21
1846 1911 1.638589 TGTAAAGGGGGATGGTCTTGG 59.361 52.381 0.00 0.00 0.00 3.61
1937 2002 5.739959 TGCTGTGTTAACTTATATGCAGGA 58.260 37.500 7.22 3.00 0.00 3.86
2070 2135 3.844577 TTGTCTGGTACTTCTAGCGAC 57.155 47.619 0.00 0.00 0.00 5.19
2136 2201 6.617105 GCTTGTTAGATGTTTTGAAAGCATGC 60.617 38.462 11.98 10.51 38.84 4.06
2151 2216 8.962884 TGAAAGCATGCAACTAAGATCTTATA 57.037 30.769 21.98 0.00 0.00 0.98
2152 2217 9.565090 TGAAAGCATGCAACTAAGATCTTATAT 57.435 29.630 21.98 4.76 0.00 0.86
2247 2320 4.825422 TCTGACAATGTCTGGAACTGATC 58.175 43.478 18.00 0.00 38.85 2.92
2256 2329 3.817647 GTCTGGAACTGATCTGCTTGTTT 59.182 43.478 0.00 0.00 38.85 2.83
2338 2411 9.440773 GCATGATATTCTTAGATGTTGTATGGA 57.559 33.333 0.00 0.00 0.00 3.41
2341 2414 8.088365 TGATATTCTTAGATGTTGTATGGACGG 58.912 37.037 0.00 0.00 0.00 4.79
2398 2471 4.285292 CAGCTAGCTGAAAATATTTGCCG 58.715 43.478 36.47 6.71 46.30 5.69
2405 2478 2.159448 TGAAAATATTTGCCGAGCCGTG 60.159 45.455 0.39 0.00 0.00 4.94
2462 2535 8.463930 AGACACTTTCCATTCTTTTCACATTA 57.536 30.769 0.00 0.00 0.00 1.90
2505 2578 4.406456 TGCAGTTTGATGTTACATTCCCT 58.594 39.130 0.00 0.00 0.00 4.20
2778 2851 3.120898 GGAGTTGGTTCCCCTAAGGTAT 58.879 50.000 0.00 0.00 36.75 2.73
2868 2942 3.181491 TGAACTGCTTGTGGTTTTAGCAC 60.181 43.478 2.26 2.26 46.05 4.40
2884 2958 3.266510 AGCACGGCTAATTCAAGATCA 57.733 42.857 0.00 0.00 36.99 2.92
2933 3007 7.528996 AACCAGATCTTGAATTTGTGAATCA 57.471 32.000 0.00 0.00 0.00 2.57
3000 3074 2.484241 GCCTCCATGGATTTTGAATGGC 60.484 50.000 16.63 17.71 40.62 4.40
3121 3195 6.759497 ATTACTCCCTTCATTTGTGCTTAC 57.241 37.500 0.00 0.00 0.00 2.34
3130 3204 5.565592 TCATTTGTGCTTACAAGGCATAG 57.434 39.130 0.00 0.00 41.86 2.23
3385 3465 3.644966 TGGAAACCACAAGACAGAACT 57.355 42.857 0.00 0.00 0.00 3.01
3407 3487 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
3437 3517 3.070018 CGCTTTGTCAATCTCAAGACCT 58.930 45.455 0.00 0.00 33.89 3.85
3444 3524 2.543067 AATCTCAAGACCTGCCGGCC 62.543 60.000 26.77 8.39 0.00 6.13
3484 3564 1.632018 TAGGGGTAGGGTGTGCATGC 61.632 60.000 11.82 11.82 0.00 4.06
3525 3609 3.370978 GTGTACATATTTGTGAGCGTGCT 59.629 43.478 0.00 0.00 36.53 4.40
3915 4003 9.944663 TTAAGCTTATTACCGCAATAATTTCAG 57.055 29.630 7.08 0.00 38.21 3.02
4161 4249 2.158769 TCCCCATAGTGACATGTGATGC 60.159 50.000 1.15 0.00 0.00 3.91
4163 4251 2.615447 CCCATAGTGACATGTGATGCAC 59.385 50.000 1.15 5.05 37.48 4.57
4177 4265 0.548682 ATGCACTCCTTGGGTCCTCT 60.549 55.000 0.00 0.00 0.00 3.69
4286 4374 5.335127 GCACAAGCTGACTAATTTGTATGG 58.665 41.667 0.00 0.00 37.91 2.74
4287 4375 5.106157 GCACAAGCTGACTAATTTGTATGGT 60.106 40.000 0.00 0.00 37.91 3.55
4288 4376 6.317088 CACAAGCTGACTAATTTGTATGGTG 58.683 40.000 0.00 0.00 32.86 4.17
4289 4377 6.003950 ACAAGCTGACTAATTTGTATGGTGT 58.996 36.000 0.00 0.00 32.41 4.16
4359 4447 8.315391 TCATTCTAATGTTGTCATATGCTAGC 57.685 34.615 8.10 8.10 37.65 3.42
4392 4480 6.435591 TGGTCTTCATCTAGTGATATGCTAGG 59.564 42.308 9.69 0.00 36.54 3.02
4442 4530 7.059212 GTGCGTTCATCAAAAGAAGAATTTTG 58.941 34.615 5.74 5.74 46.72 2.44
4538 4626 6.589523 TGATTAATTTTTCGAAAGCCACATGG 59.410 34.615 10.98 0.00 38.53 3.66
4542 4630 5.713792 TTTTTCGAAAGCCACATGGATAA 57.286 34.783 10.98 0.00 37.39 1.75
4588 4676 8.976986 ATTGCATTCTGTTCTGTTCTTTTATC 57.023 30.769 0.00 0.00 0.00 1.75
4602 4690 9.495754 CTGTTCTTTTATCAAGTTATAGCTTGC 57.504 33.333 20.94 7.41 43.92 4.01
4603 4691 8.458843 TGTTCTTTTATCAAGTTATAGCTTGCC 58.541 33.333 20.94 4.55 43.92 4.52
5083 5171 4.083324 TCTCAATTCATGAAGCCGAACAAC 60.083 41.667 14.54 0.00 37.67 3.32
5284 5373 0.395862 TTTCCACACGCCTCCCAAAA 60.396 50.000 0.00 0.00 0.00 2.44
5320 5409 7.041576 GGTTAACGGAACAGAGTCTTACAAATT 60.042 37.037 0.00 0.00 40.09 1.82
5321 5410 8.981647 GTTAACGGAACAGAGTCTTACAAATTA 58.018 33.333 0.00 0.00 38.02 1.40
5322 5411 7.417496 AACGGAACAGAGTCTTACAAATTAC 57.583 36.000 0.00 0.00 0.00 1.89
5323 5412 6.756221 ACGGAACAGAGTCTTACAAATTACT 58.244 36.000 0.00 0.00 0.00 2.24
5324 5413 6.867293 ACGGAACAGAGTCTTACAAATTACTC 59.133 38.462 0.00 0.00 38.90 2.59
5325 5414 6.310711 CGGAACAGAGTCTTACAAATTACTCC 59.689 42.308 0.00 0.00 39.33 3.85
5326 5415 6.594547 GGAACAGAGTCTTACAAATTACTCCC 59.405 42.308 0.00 0.00 39.33 4.30
5327 5416 6.936968 ACAGAGTCTTACAAATTACTCCCT 57.063 37.500 0.00 0.00 39.33 4.20
5328 5417 6.937392 ACAGAGTCTTACAAATTACTCCCTC 58.063 40.000 0.00 0.00 39.33 4.30
5329 5418 6.726764 ACAGAGTCTTACAAATTACTCCCTCT 59.273 38.462 0.00 0.00 39.33 3.69
5330 5419 7.038659 CAGAGTCTTACAAATTACTCCCTCTG 58.961 42.308 0.00 0.00 39.33 3.35
5331 5420 6.726764 AGAGTCTTACAAATTACTCCCTCTGT 59.273 38.462 0.00 0.00 39.33 3.41
5332 5421 7.235812 AGAGTCTTACAAATTACTCCCTCTGTT 59.764 37.037 0.00 0.00 39.33 3.16
5333 5422 7.387643 AGTCTTACAAATTACTCCCTCTGTTC 58.612 38.462 0.00 0.00 0.00 3.18
5334 5423 6.594547 GTCTTACAAATTACTCCCTCTGTTCC 59.405 42.308 0.00 0.00 0.00 3.62
5335 5424 4.993705 ACAAATTACTCCCTCTGTTCCA 57.006 40.909 0.00 0.00 0.00 3.53
5336 5425 5.319043 ACAAATTACTCCCTCTGTTCCAA 57.681 39.130 0.00 0.00 0.00 3.53
5337 5426 5.701224 ACAAATTACTCCCTCTGTTCCAAA 58.299 37.500 0.00 0.00 0.00 3.28
5338 5427 6.133356 ACAAATTACTCCCTCTGTTCCAAAA 58.867 36.000 0.00 0.00 0.00 2.44
5339 5428 6.782494 ACAAATTACTCCCTCTGTTCCAAAAT 59.218 34.615 0.00 0.00 0.00 1.82
5340 5429 7.947890 ACAAATTACTCCCTCTGTTCCAAAATA 59.052 33.333 0.00 0.00 0.00 1.40
5341 5430 8.462016 CAAATTACTCCCTCTGTTCCAAAATAG 58.538 37.037 0.00 0.00 0.00 1.73
5342 5431 6.945636 TTACTCCCTCTGTTCCAAAATAGA 57.054 37.500 0.00 0.00 32.42 1.98
5343 5432 7.510675 TTACTCCCTCTGTTCCAAAATAGAT 57.489 36.000 0.00 0.00 32.88 1.98
5344 5433 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
5345 5434 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
5346 5435 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
5347 5436 4.884164 CCCTCTGTTCCAAAATAGATGACC 59.116 45.833 0.00 0.00 32.88 4.02
5348 5437 4.884164 CCTCTGTTCCAAAATAGATGACCC 59.116 45.833 0.00 0.00 32.88 4.46
5349 5438 5.500234 CTCTGTTCCAAAATAGATGACCCA 58.500 41.667 0.00 0.00 32.88 4.51
5350 5439 5.886609 TCTGTTCCAAAATAGATGACCCAA 58.113 37.500 0.00 0.00 28.72 4.12
5351 5440 5.710099 TCTGTTCCAAAATAGATGACCCAAC 59.290 40.000 0.00 0.00 28.72 3.77
5352 5441 5.640147 TGTTCCAAAATAGATGACCCAACT 58.360 37.500 0.00 0.00 0.00 3.16
5353 5442 6.074648 TGTTCCAAAATAGATGACCCAACTT 58.925 36.000 0.00 0.00 0.00 2.66
5354 5443 6.553100 TGTTCCAAAATAGATGACCCAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
5355 5444 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5356 5445 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5357 5446 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5358 5447 7.726291 TCCAAAATAGATGACCCAACTTTGTAA 59.274 33.333 0.00 0.00 0.00 2.41
5359 5448 8.531146 CCAAAATAGATGACCCAACTTTGTAAT 58.469 33.333 0.00 0.00 0.00 1.89
5363 5452 9.975218 AATAGATGACCCAACTTTGTAATAACT 57.025 29.630 0.00 0.00 0.00 2.24
5364 5453 9.975218 ATAGATGACCCAACTTTGTAATAACTT 57.025 29.630 0.00 0.00 0.00 2.66
5365 5454 8.706322 AGATGACCCAACTTTGTAATAACTTT 57.294 30.769 0.00 0.00 0.00 2.66
5366 5455 8.576442 AGATGACCCAACTTTGTAATAACTTTG 58.424 33.333 0.00 0.00 0.00 2.77
5367 5456 7.648039 TGACCCAACTTTGTAATAACTTTGT 57.352 32.000 0.00 0.00 0.00 2.83
5368 5457 8.749026 TGACCCAACTTTGTAATAACTTTGTA 57.251 30.769 0.00 0.00 0.00 2.41
5369 5458 8.623030 TGACCCAACTTTGTAATAACTTTGTAC 58.377 33.333 0.00 0.00 0.00 2.90
5370 5459 8.756486 ACCCAACTTTGTAATAACTTTGTACT 57.244 30.769 0.00 0.00 0.00 2.73
5371 5460 9.850198 ACCCAACTTTGTAATAACTTTGTACTA 57.150 29.630 0.00 0.00 0.00 1.82
5407 5496 8.970691 AAAATTGAGTCATCTATTTTGGAACG 57.029 30.769 11.47 0.00 44.08 3.95
5408 5497 6.683974 ATTGAGTCATCTATTTTGGAACGG 57.316 37.500 0.00 0.00 0.00 4.44
5409 5498 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5410 5499 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5411 5500 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5412 5501 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5413 5502 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5414 5503 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5455 5544 6.435292 AAACCCAGTTCAGTACAACTAGAT 57.565 37.500 0.00 0.00 34.70 1.98
5715 5805 4.219288 CACTTTAGAGAAGCAATTGGCCTT 59.781 41.667 3.32 2.70 46.50 4.35
5718 5808 1.076024 AGAGAAGCAATTGGCCTTCCA 59.924 47.619 17.27 0.00 46.50 3.53
5748 5838 5.280011 CCCGCCTGGTGTATATTTCTTCTAT 60.280 44.000 6.49 0.00 0.00 1.98
5818 5911 4.881273 TGTTACTGTTGAAACATGAGCTGT 59.119 37.500 0.00 0.00 40.84 4.40
5821 5914 4.450976 ACTGTTGAAACATGAGCTGTACA 58.549 39.130 0.00 0.00 36.98 2.90
5822 5915 4.273480 ACTGTTGAAACATGAGCTGTACAC 59.727 41.667 0.00 0.00 36.98 2.90
5823 5916 4.450976 TGTTGAAACATGAGCTGTACACT 58.549 39.130 0.00 0.00 36.98 3.55
5824 5917 4.881273 TGTTGAAACATGAGCTGTACACTT 59.119 37.500 0.00 0.00 36.98 3.16
5826 5919 4.702831 TGAAACATGAGCTGTACACTTGA 58.297 39.130 0.00 0.00 36.98 3.02
5827 5920 4.751600 TGAAACATGAGCTGTACACTTGAG 59.248 41.667 0.00 0.00 36.98 3.02
5828 5921 2.693069 ACATGAGCTGTACACTTGAGC 58.307 47.619 0.00 0.00 35.91 4.26
5829 5922 2.301296 ACATGAGCTGTACACTTGAGCT 59.699 45.455 6.28 6.28 45.82 4.09
5830 5923 2.445565 TGAGCTGTACACTTGAGCTG 57.554 50.000 10.93 0.00 43.18 4.24
5831 5924 1.688735 TGAGCTGTACACTTGAGCTGT 59.311 47.619 10.93 0.00 43.18 4.40
5832 5925 2.890945 TGAGCTGTACACTTGAGCTGTA 59.109 45.455 10.93 0.00 43.18 2.74
5833 5926 3.246619 GAGCTGTACACTTGAGCTGTAC 58.753 50.000 10.93 0.00 43.18 2.90
5834 5927 2.894126 AGCTGTACACTTGAGCTGTACT 59.106 45.455 12.69 0.00 43.02 2.73
5835 5928 3.322254 AGCTGTACACTTGAGCTGTACTT 59.678 43.478 12.69 0.00 43.02 2.24
5836 5929 3.430218 GCTGTACACTTGAGCTGTACTTG 59.570 47.826 12.69 7.95 43.02 3.16
5837 5930 4.796290 GCTGTACACTTGAGCTGTACTTGA 60.796 45.833 12.69 0.00 43.02 3.02
5838 5931 4.871513 TGTACACTTGAGCTGTACTTGAG 58.128 43.478 12.69 0.00 43.02 3.02
5839 5932 4.583073 TGTACACTTGAGCTGTACTTGAGA 59.417 41.667 12.69 0.00 43.02 3.27
5840 5933 3.983741 ACACTTGAGCTGTACTTGAGAC 58.016 45.455 0.00 0.00 0.00 3.36
6002 6095 4.437930 GCTGTATGCTCGAAAAGAAGCATT 60.438 41.667 14.30 1.02 41.01 3.56
6003 6096 4.973396 TGTATGCTCGAAAAGAAGCATTG 58.027 39.130 14.30 0.00 41.01 2.82
6005 6098 3.818961 TGCTCGAAAAGAAGCATTGAG 57.181 42.857 0.00 0.00 31.42 3.02
6007 6100 3.187227 TGCTCGAAAAGAAGCATTGAGTC 59.813 43.478 0.00 0.00 31.42 3.36
6009 6102 3.738982 TCGAAAAGAAGCATTGAGTCCA 58.261 40.909 0.00 0.00 0.00 4.02
6010 6103 4.326826 TCGAAAAGAAGCATTGAGTCCAT 58.673 39.130 0.00 0.00 0.00 3.41
6011 6104 4.154737 TCGAAAAGAAGCATTGAGTCCATG 59.845 41.667 0.00 0.00 0.00 3.66
6013 6106 5.638783 GAAAAGAAGCATTGAGTCCATGAG 58.361 41.667 8.35 0.00 0.00 2.90
6014 6107 3.278668 AGAAGCATTGAGTCCATGAGG 57.721 47.619 8.35 0.00 0.00 3.86
6016 6109 2.414994 AGCATTGAGTCCATGAGGTG 57.585 50.000 8.35 0.00 35.89 4.00
6048 6154 5.088739 CGTTTGTTTCTTATCATGAGGTGC 58.911 41.667 0.09 0.00 0.00 5.01
6049 6155 5.334802 CGTTTGTTTCTTATCATGAGGTGCA 60.335 40.000 0.09 0.00 0.00 4.57
6050 6156 6.623549 CGTTTGTTTCTTATCATGAGGTGCAT 60.624 38.462 0.09 0.00 37.85 3.96
6180 6289 2.992124 TCCTTCCAAAATATCCGCGA 57.008 45.000 8.23 0.00 0.00 5.87
6196 6305 1.872197 GCGAGGCAGAGGCGATAGAT 61.872 60.000 0.00 0.00 42.47 1.98
6214 6323 7.064728 GCGATAGATATTTCTAACCCATGGTTC 59.935 40.741 11.73 0.00 41.99 3.62
6244 6353 0.541392 TCGTGGCAGGCATATTCACT 59.459 50.000 0.00 0.00 0.00 3.41
6245 6354 1.760029 TCGTGGCAGGCATATTCACTA 59.240 47.619 0.00 0.00 0.00 2.74
6280 6389 6.318648 TCATAGATTCTTTTGTGTACCATGGC 59.681 38.462 13.04 0.00 0.00 4.40
6313 6422 3.386078 TCAAGAAGAAGATGGAGATCGGG 59.614 47.826 0.00 0.00 33.34 5.14
6332 6441 2.014857 GGAAGCTCGGGTAAATCCAAC 58.985 52.381 0.00 0.00 38.11 3.77
6344 6453 3.587797 AAATCCAACTTGAGCAGCATG 57.412 42.857 0.00 0.00 40.87 4.06
6482 6608 8.506168 TCGACTTTTGCTAATTATTTGATCCT 57.494 30.769 0.00 0.00 0.00 3.24
6507 6633 7.971183 AGAACATAGAGGTTTCTTGTTTCTC 57.029 36.000 0.00 0.00 36.11 2.87
6591 6738 4.315803 ACATACTCAAAACCCTCAACTCG 58.684 43.478 0.00 0.00 0.00 4.18
6666 6819 8.625651 ACGATATAGGAGTACATGATAGATTGC 58.374 37.037 0.00 0.00 0.00 3.56
6672 6825 8.155620 AGGAGTACATGATAGATTGCCAATAT 57.844 34.615 0.00 0.00 0.00 1.28
6718 6874 8.810652 TTTATGAAAACTTGACCAAATACAGC 57.189 30.769 0.00 0.00 0.00 4.40
6893 7074 2.040178 GGAGAAGGACGTATCATGGGT 58.960 52.381 0.00 0.00 0.00 4.51
6926 7117 0.106519 CCGCTCTCCCAATCCCAATT 60.107 55.000 0.00 0.00 0.00 2.32
6963 7154 3.918253 ATCGCCGGCAGGAAAAGCA 62.918 57.895 28.98 1.65 41.02 3.91
7001 7193 1.615392 CCTGCCTTTTTCCTTGTCAGG 59.385 52.381 0.00 0.00 42.50 3.86
7074 7320 2.545946 GGCTTAATTGTGAGAGCGATCC 59.454 50.000 0.00 0.00 36.02 3.36
7075 7321 3.462021 GCTTAATTGTGAGAGCGATCCT 58.538 45.455 0.00 0.00 0.00 3.24
7133 7386 2.168728 GCCCGGACAGGAGGAATATATC 59.831 54.545 0.73 0.00 45.00 1.63
7134 7387 2.427453 CCCGGACAGGAGGAATATATCG 59.573 54.545 0.73 0.00 45.00 2.92
7135 7388 3.090037 CCGGACAGGAGGAATATATCGT 58.910 50.000 0.00 0.00 45.00 3.73
7136 7389 3.128938 CCGGACAGGAGGAATATATCGTC 59.871 52.174 0.00 0.00 45.00 4.20
7137 7390 3.756963 CGGACAGGAGGAATATATCGTCA 59.243 47.826 0.00 0.00 43.26 4.35
7138 7391 4.217767 CGGACAGGAGGAATATATCGTCAA 59.782 45.833 0.00 0.00 43.26 3.18
7140 7393 6.159988 GGACAGGAGGAATATATCGTCAAAG 58.840 44.000 0.00 0.00 43.26 2.77
7191 7453 1.946156 GCGATGCGATGCGAGAGAA 60.946 57.895 0.00 0.00 0.00 2.87
7205 7467 2.604373 CGAGAGAATGATCGCTCTGTCC 60.604 54.545 14.85 3.42 46.66 4.02
7230 7497 1.827789 CTGCTCTCCTCTCCTCCGG 60.828 68.421 0.00 0.00 0.00 5.14
7273 7550 0.814010 CCGGTCGGATCAACCAATCC 60.814 60.000 14.77 0.00 41.63 3.01
7274 7551 0.107897 CGGTCGGATCAACCAATCCA 60.108 55.000 14.77 0.00 44.73 3.41
7284 7561 5.765182 GGATCAACCAATCCAATCGATAGTT 59.235 40.000 0.00 0.00 44.04 2.24
7296 7573 6.597672 TCCAATCGATAGTTGCAAAACTATGT 59.402 34.615 14.40 0.00 43.79 2.29
7297 7574 7.120579 TCCAATCGATAGTTGCAAAACTATGTT 59.879 33.333 14.40 5.57 43.79 2.71
7298 7575 7.754924 CCAATCGATAGTTGCAAAACTATGTTT 59.245 33.333 14.40 6.96 43.79 2.83
7299 7576 8.788813 CAATCGATAGTTGCAAAACTATGTTTC 58.211 33.333 14.40 2.31 43.79 2.78
7300 7577 7.667043 TCGATAGTTGCAAAACTATGTTTCT 57.333 32.000 14.40 0.59 43.79 2.52
7301 7578 7.518161 TCGATAGTTGCAAAACTATGTTTCTG 58.482 34.615 14.40 1.24 43.79 3.02
7302 7579 6.742718 CGATAGTTGCAAAACTATGTTTCTGG 59.257 38.462 14.40 0.00 43.79 3.86
7303 7580 7.360861 CGATAGTTGCAAAACTATGTTTCTGGA 60.361 37.037 14.40 0.00 43.79 3.86
7304 7581 5.831997 AGTTGCAAAACTATGTTTCTGGAC 58.168 37.500 0.00 0.00 0.00 4.02
7305 7582 5.359576 AGTTGCAAAACTATGTTTCTGGACA 59.640 36.000 0.00 0.00 0.00 4.02
7306 7583 5.181690 TGCAAAACTATGTTTCTGGACAC 57.818 39.130 0.00 0.00 31.30 3.67
7307 7584 4.037446 TGCAAAACTATGTTTCTGGACACC 59.963 41.667 0.00 0.00 31.30 4.16
7308 7585 4.037446 GCAAAACTATGTTTCTGGACACCA 59.963 41.667 0.00 0.00 31.30 4.17
7309 7586 5.278957 GCAAAACTATGTTTCTGGACACCAT 60.279 40.000 0.00 0.00 30.82 3.55
7310 7587 5.964958 AAACTATGTTTCTGGACACCATG 57.035 39.130 0.00 0.00 30.82 3.66
7311 7588 3.347216 ACTATGTTTCTGGACACCATGC 58.653 45.455 0.00 0.00 30.82 4.06
7312 7589 1.549203 ATGTTTCTGGACACCATGCC 58.451 50.000 0.00 0.00 30.82 4.40
7313 7590 0.184692 TGTTTCTGGACACCATGCCA 59.815 50.000 0.00 0.00 30.82 4.92
7316 7593 4.828409 CTGGACACCATGCCAGTT 57.172 55.556 8.51 0.00 45.21 3.16
7317 7594 2.559785 CTGGACACCATGCCAGTTC 58.440 57.895 8.51 0.00 45.21 3.01
7318 7595 1.300971 CTGGACACCATGCCAGTTCG 61.301 60.000 8.51 0.00 45.21 3.95
7319 7596 1.302511 GGACACCATGCCAGTTCGT 60.303 57.895 0.00 0.00 0.00 3.85
7320 7597 1.298859 GGACACCATGCCAGTTCGTC 61.299 60.000 0.00 0.00 0.00 4.20
7321 7598 0.320771 GACACCATGCCAGTTCGTCT 60.321 55.000 0.00 0.00 0.00 4.18
7322 7599 0.973632 ACACCATGCCAGTTCGTCTA 59.026 50.000 0.00 0.00 0.00 2.59
7323 7600 1.337823 ACACCATGCCAGTTCGTCTAC 60.338 52.381 0.00 0.00 0.00 2.59
7324 7601 1.066858 CACCATGCCAGTTCGTCTACT 60.067 52.381 0.00 0.00 0.00 2.57
7325 7602 1.204941 ACCATGCCAGTTCGTCTACTC 59.795 52.381 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.263496 TCTGTATGTCTTCTCTCATTCATGTG 58.737 38.462 0.00 0.00 0.00 3.21
10 11 5.478332 TGCTCTTTCTGTATGTCTTCTCTCA 59.522 40.000 0.00 0.00 0.00 3.27
26 27 2.670414 CGGTCTCTTCATGTGCTCTTTC 59.330 50.000 0.00 0.00 0.00 2.62
60 61 7.015195 GCATCTCCTCTCTTACTAATCCTCTTT 59.985 40.741 0.00 0.00 0.00 2.52
76 77 0.831288 CTCCATCCCGCATCTCCTCT 60.831 60.000 0.00 0.00 0.00 3.69
83 84 0.765903 AGTCCATCTCCATCCCGCAT 60.766 55.000 0.00 0.00 0.00 4.73
86 87 0.760567 TCCAGTCCATCTCCATCCCG 60.761 60.000 0.00 0.00 0.00 5.14
100 101 1.692519 AGTCTACGTTTTGCCTCCAGT 59.307 47.619 0.00 0.00 0.00 4.00
103 104 4.501071 TGAATAGTCTACGTTTTGCCTCC 58.499 43.478 0.00 0.00 0.00 4.30
105 106 5.488341 ACATGAATAGTCTACGTTTTGCCT 58.512 37.500 0.00 0.00 0.00 4.75
122 123 6.127647 GGATGTCTAAAGGCAATCAACATGAA 60.128 38.462 0.00 0.00 0.00 2.57
125 126 4.336433 CGGATGTCTAAAGGCAATCAACAT 59.664 41.667 0.00 0.00 0.00 2.71
165 166 4.329462 AATCTGGCGAGAGGAGTTATTC 57.671 45.455 4.31 0.00 0.00 1.75
180 181 0.615544 ACCATGGCCCACAAATCTGG 60.616 55.000 13.04 0.00 32.83 3.86
213 214 9.036980 AGTACTCCTATATGGACATTGTATTCC 57.963 37.037 0.00 0.00 40.56 3.01
243 244 6.763135 GTGTCAGGTATATTCATTTCTCAGCA 59.237 38.462 0.00 0.00 0.00 4.41
244 245 6.203723 GGTGTCAGGTATATTCATTTCTCAGC 59.796 42.308 0.00 0.00 0.00 4.26
267 296 6.719829 TGATCCGTGATGTATTCATACTAGGT 59.280 38.462 0.00 0.00 36.54 3.08
331 360 4.803613 CCGATAAATCACGAGTGAACATGA 59.196 41.667 10.15 0.00 43.58 3.07
360 389 6.833933 CCTGGGTTTAAGGAACTAAAGCATAT 59.166 38.462 7.38 0.00 38.49 1.78
378 407 0.252103 TCTAGCTTCGTCCCTGGGTT 60.252 55.000 13.56 0.00 0.00 4.11
380 409 0.902531 TTTCTAGCTTCGTCCCTGGG 59.097 55.000 6.33 6.33 0.00 4.45
381 410 2.762535 TTTTCTAGCTTCGTCCCTGG 57.237 50.000 0.00 0.00 0.00 4.45
399 428 6.994421 AGACATGACCCCATTTAACTTTTT 57.006 33.333 0.00 0.00 0.00 1.94
400 429 7.893302 TCATAGACATGACCCCATTTAACTTTT 59.107 33.333 0.00 0.00 36.22 2.27
401 430 7.410174 TCATAGACATGACCCCATTTAACTTT 58.590 34.615 0.00 0.00 36.22 2.66
402 431 6.969043 TCATAGACATGACCCCATTTAACTT 58.031 36.000 0.00 0.00 36.22 2.66
403 432 6.575244 TCATAGACATGACCCCATTTAACT 57.425 37.500 0.00 0.00 36.22 2.24
415 444 2.766263 GACCCCACTGTCATAGACATGA 59.234 50.000 0.00 0.00 41.94 3.07
416 445 2.501316 TGACCCCACTGTCATAGACATG 59.499 50.000 0.00 0.00 41.94 3.21
417 446 2.832838 TGACCCCACTGTCATAGACAT 58.167 47.619 0.00 0.00 41.94 3.06
418 447 2.319025 TGACCCCACTGTCATAGACA 57.681 50.000 0.00 0.00 40.22 3.41
425 454 7.556275 TCATTAATAAAAGATGACCCCACTGTC 59.444 37.037 0.00 0.00 35.77 3.51
426 455 7.410174 TCATTAATAAAAGATGACCCCACTGT 58.590 34.615 0.00 0.00 0.00 3.55
427 456 7.880160 TCATTAATAAAAGATGACCCCACTG 57.120 36.000 0.00 0.00 0.00 3.66
460 489 9.959721 AGCAAATCCTTCAGAAATTAAGTACTA 57.040 29.630 0.00 0.00 0.00 1.82
461 490 8.734386 CAGCAAATCCTTCAGAAATTAAGTACT 58.266 33.333 0.00 0.00 0.00 2.73
462 491 8.730680 TCAGCAAATCCTTCAGAAATTAAGTAC 58.269 33.333 0.00 0.00 0.00 2.73
463 492 8.862325 TCAGCAAATCCTTCAGAAATTAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
464 493 7.765695 TCAGCAAATCCTTCAGAAATTAAGT 57.234 32.000 0.00 0.00 0.00 2.24
465 494 9.649167 AAATCAGCAAATCCTTCAGAAATTAAG 57.351 29.630 0.00 0.00 0.00 1.85
466 495 9.643693 GAAATCAGCAAATCCTTCAGAAATTAA 57.356 29.630 0.00 0.00 0.00 1.40
467 496 8.805175 TGAAATCAGCAAATCCTTCAGAAATTA 58.195 29.630 0.00 0.00 0.00 1.40
468 497 7.673180 TGAAATCAGCAAATCCTTCAGAAATT 58.327 30.769 0.00 0.00 0.00 1.82
469 498 7.235935 TGAAATCAGCAAATCCTTCAGAAAT 57.764 32.000 0.00 0.00 0.00 2.17
470 499 6.653526 TGAAATCAGCAAATCCTTCAGAAA 57.346 33.333 0.00 0.00 0.00 2.52
471 500 6.845758 ATGAAATCAGCAAATCCTTCAGAA 57.154 33.333 0.00 0.00 0.00 3.02
472 501 6.350696 CCAATGAAATCAGCAAATCCTTCAGA 60.351 38.462 0.00 0.00 0.00 3.27
473 502 5.810587 CCAATGAAATCAGCAAATCCTTCAG 59.189 40.000 0.00 0.00 0.00 3.02
474 503 5.337733 CCCAATGAAATCAGCAAATCCTTCA 60.338 40.000 0.00 0.00 0.00 3.02
475 504 5.114081 CCCAATGAAATCAGCAAATCCTTC 58.886 41.667 0.00 0.00 0.00 3.46
476 505 4.080751 CCCCAATGAAATCAGCAAATCCTT 60.081 41.667 0.00 0.00 0.00 3.36
477 506 3.453353 CCCCAATGAAATCAGCAAATCCT 59.547 43.478 0.00 0.00 0.00 3.24
478 507 3.198417 ACCCCAATGAAATCAGCAAATCC 59.802 43.478 0.00 0.00 0.00 3.01
479 508 4.476628 ACCCCAATGAAATCAGCAAATC 57.523 40.909 0.00 0.00 0.00 2.17
480 509 4.914177 AACCCCAATGAAATCAGCAAAT 57.086 36.364 0.00 0.00 0.00 2.32
481 510 5.815233 TTAACCCCAATGAAATCAGCAAA 57.185 34.783 0.00 0.00 0.00 3.68
482 511 6.013898 TCAATTAACCCCAATGAAATCAGCAA 60.014 34.615 0.00 0.00 0.00 3.91
483 512 5.483231 TCAATTAACCCCAATGAAATCAGCA 59.517 36.000 0.00 0.00 0.00 4.41
484 513 5.812127 GTCAATTAACCCCAATGAAATCAGC 59.188 40.000 0.00 0.00 0.00 4.26
485 514 6.340522 GGTCAATTAACCCCAATGAAATCAG 58.659 40.000 0.00 0.00 32.82 2.90
486 515 6.293004 GGTCAATTAACCCCAATGAAATCA 57.707 37.500 0.00 0.00 32.82 2.57
498 527 5.265989 TGTAAGGATTGGGGTCAATTAACC 58.734 41.667 0.00 0.00 43.08 2.85
499 528 6.844097 TTGTAAGGATTGGGGTCAATTAAC 57.156 37.500 0.00 0.00 43.08 2.01
516 545 0.741221 GGACGGAGCTGCCTTGTAAG 60.741 60.000 0.00 0.00 0.00 2.34
517 546 1.295423 GGACGGAGCTGCCTTGTAA 59.705 57.895 0.00 0.00 0.00 2.41
518 547 2.656069 GGGACGGAGCTGCCTTGTA 61.656 63.158 0.00 0.00 0.00 2.41
519 548 4.021925 GGGACGGAGCTGCCTTGT 62.022 66.667 0.00 0.00 0.00 3.16
520 549 3.710722 AGGGACGGAGCTGCCTTG 61.711 66.667 0.00 0.00 0.00 3.61
521 550 3.710722 CAGGGACGGAGCTGCCTT 61.711 66.667 0.00 0.00 28.59 4.35
524 553 2.914777 CTAAGCAGGGACGGAGCTGC 62.915 65.000 0.00 0.00 40.56 5.25
525 554 1.142748 CTAAGCAGGGACGGAGCTG 59.857 63.158 0.00 0.00 38.86 4.24
526 555 1.000486 TCTAAGCAGGGACGGAGCT 60.000 57.895 0.00 0.00 41.03 4.09
527 556 1.142097 GTCTAAGCAGGGACGGAGC 59.858 63.158 0.00 0.00 0.00 4.70
528 557 0.970937 TGGTCTAAGCAGGGACGGAG 60.971 60.000 0.00 0.00 33.70 4.63
529 558 0.325296 ATGGTCTAAGCAGGGACGGA 60.325 55.000 0.00 0.00 33.70 4.69
530 559 0.179073 CATGGTCTAAGCAGGGACGG 60.179 60.000 0.00 0.00 33.70 4.79
531 560 0.824109 TCATGGTCTAAGCAGGGACG 59.176 55.000 0.00 0.00 33.70 4.79
532 561 2.102252 CTCTCATGGTCTAAGCAGGGAC 59.898 54.545 0.00 0.00 0.00 4.46
533 562 2.292521 ACTCTCATGGTCTAAGCAGGGA 60.293 50.000 0.00 0.00 0.00 4.20
534 563 2.114616 ACTCTCATGGTCTAAGCAGGG 58.885 52.381 0.00 0.00 0.00 4.45
535 564 5.543507 AATACTCTCATGGTCTAAGCAGG 57.456 43.478 0.00 0.00 0.00 4.85
536 565 9.019656 ACTATAATACTCTCATGGTCTAAGCAG 57.980 37.037 0.00 0.00 0.00 4.24
537 566 8.941995 ACTATAATACTCTCATGGTCTAAGCA 57.058 34.615 0.00 0.00 0.00 3.91
538 567 9.015367 TGACTATAATACTCTCATGGTCTAAGC 57.985 37.037 0.00 0.00 32.97 3.09
542 571 9.073475 GAAGTGACTATAATACTCTCATGGTCT 57.927 37.037 0.00 0.00 32.97 3.85
543 572 9.073475 AGAAGTGACTATAATACTCTCATGGTC 57.927 37.037 0.00 0.00 32.54 4.02
544 573 9.427821 AAGAAGTGACTATAATACTCTCATGGT 57.572 33.333 0.00 0.00 0.00 3.55
548 577 9.053840 CGGTAAGAAGTGACTATAATACTCTCA 57.946 37.037 0.00 0.00 0.00 3.27
549 578 8.505625 CCGGTAAGAAGTGACTATAATACTCTC 58.494 40.741 0.00 0.00 0.00 3.20
550 579 8.216423 TCCGGTAAGAAGTGACTATAATACTCT 58.784 37.037 0.00 0.00 0.00 3.24
581 610 2.452600 TTTGAGCAACCCCAAAGTCT 57.547 45.000 0.00 0.00 0.00 3.24
613 642 8.033038 CCCCAAAATGTCATTATGATCATCATC 58.967 37.037 12.53 0.00 38.26 2.92
627 656 3.581101 TCCAATGAACCCCAAAATGTCA 58.419 40.909 0.00 0.00 0.00 3.58
658 687 1.340991 TGACCAAATCTAGCCCCTTGC 60.341 52.381 0.00 0.00 41.71 4.01
661 690 1.417890 CGATGACCAAATCTAGCCCCT 59.582 52.381 0.00 0.00 0.00 4.79
666 695 3.459232 TGAGCCGATGACCAAATCTAG 57.541 47.619 0.00 0.00 0.00 2.43
681 710 3.683365 AAATGACCCACAAATTGAGCC 57.317 42.857 0.00 0.00 0.00 4.70
727 756 1.603802 CCACGTGTGCTTGAACTTGAT 59.396 47.619 15.65 0.00 0.00 2.57
742 771 3.202829 ACAAGTCCATTAACACCACGT 57.797 42.857 0.00 0.00 0.00 4.49
743 772 6.971527 TTATACAAGTCCATTAACACCACG 57.028 37.500 0.00 0.00 0.00 4.94
906 938 4.398598 GCCGCCGCGACAAAATGT 62.399 61.111 15.93 0.00 0.00 2.71
938 970 1.941294 GACGAGAGGAGATCTGCGTTA 59.059 52.381 8.74 0.00 39.92 3.18
1041 1073 4.401022 TGTAGAAGTCCTCGTTCACCTTA 58.599 43.478 0.00 0.00 0.00 2.69
1119 1151 2.687935 ACGGATCTCTGAGAAGAAGAGC 59.312 50.000 12.00 0.00 40.87 4.09
1204 1237 0.498927 GCGTGATCGAACTATGTCGC 59.501 55.000 0.00 0.00 40.88 5.19
1274 1307 1.442769 ACATGCTCGATTTTCGCACT 58.557 45.000 0.00 0.00 40.21 4.40
1367 1400 9.155975 ACCATGATAGTAATAGAATTGCGATTC 57.844 33.333 17.64 17.64 41.63 2.52
1535 1600 4.347876 ACTTCACCATGGTAGCAGCATATA 59.652 41.667 19.28 0.00 34.09 0.86
1536 1601 3.137176 ACTTCACCATGGTAGCAGCATAT 59.863 43.478 19.28 0.00 34.09 1.78
1600 1665 8.279970 TGTCAAAAACACTCTTATATCATGGG 57.720 34.615 0.00 0.00 31.20 4.00
1615 1680 3.199677 CTCCCTACACGTGTCAAAAACA 58.800 45.455 27.16 4.46 34.78 2.83
1627 1692 5.892686 ACTCCATTTCTAGTACTCCCTACAC 59.107 44.000 0.00 0.00 0.00 2.90
1628 1693 6.088541 ACTCCATTTCTAGTACTCCCTACA 57.911 41.667 0.00 0.00 0.00 2.74
1677 1742 8.106247 TCTAATTCAACTCCAATTGGTTACAC 57.894 34.615 23.76 0.00 36.34 2.90
1705 1770 4.941713 AGAACAAAATTATAGGTGCCCCA 58.058 39.130 0.00 0.00 0.00 4.96
1819 1884 5.075344 AGACCATCCCCCTTTACAGTTTTAA 59.925 40.000 0.00 0.00 0.00 1.52
1846 1911 8.673711 TCAGGAAAATATAGTTGCAACATGTAC 58.326 33.333 30.11 13.20 0.00 2.90
1937 2002 8.586879 TCTCTGTAGCAGCATATAGATACAAT 57.413 34.615 0.00 0.00 0.00 2.71
2070 2135 9.893305 ATTAAACACCAAAGAAATAGACGAAAG 57.107 29.630 0.00 0.00 0.00 2.62
2247 2320 3.058639 GGCTGTCTAAGTCAAACAAGCAG 60.059 47.826 0.00 0.00 0.00 4.24
2256 2329 5.869579 AGAAAATGAAGGCTGTCTAAGTCA 58.130 37.500 0.00 0.00 30.52 3.41
2338 2411 1.542492 AGGTTCGTATGACAGACCGT 58.458 50.000 0.00 0.00 0.00 4.83
2341 2414 8.699283 AGTTATTTAAGGTTCGTATGACAGAC 57.301 34.615 0.00 0.00 0.00 3.51
2351 2424 7.924412 TGGCTATCACTAGTTATTTAAGGTTCG 59.076 37.037 0.00 0.00 0.00 3.95
2398 2471 2.035442 GTCTGGGCTTTCACGGCTC 61.035 63.158 0.00 0.00 0.00 4.70
2405 2478 3.084786 GGCATATATGGTCTGGGCTTTC 58.915 50.000 14.51 0.00 0.00 2.62
2505 2578 2.050144 ACAAGAGAACAGGGAAGAGCA 58.950 47.619 0.00 0.00 0.00 4.26
2671 2744 5.005740 TCTGCAAAGTAGTCATTCAGCATT 58.994 37.500 0.00 0.00 0.00 3.56
2778 2851 5.124776 CACACTACTTCAGTTTGGGAAAACA 59.875 40.000 4.34 0.00 34.26 2.83
2868 2942 4.923893 TGCAATTGATCTTGAATTAGCCG 58.076 39.130 10.34 0.00 0.00 5.52
2933 3007 7.556844 TCGGCTATCTTGAGAGTAAAGAAAAT 58.443 34.615 0.00 0.00 37.22 1.82
3377 3457 3.139077 CCAACCACAGGTTAGTTCTGTC 58.861 50.000 0.40 0.00 45.01 3.51
3385 3465 3.911260 TCTAACCATCCAACCACAGGTTA 59.089 43.478 0.40 0.00 45.01 2.85
3437 3517 3.551496 CTGAAAGACTGGGCCGGCA 62.551 63.158 30.85 7.71 34.07 5.69
3444 3524 5.645497 CCTATGAAAACCTCTGAAAGACTGG 59.355 44.000 0.00 0.00 38.67 4.00
3484 3564 0.806102 CTCACCCCTATGAACGCACG 60.806 60.000 0.00 0.00 0.00 5.34
3549 3634 9.474920 TTGTAATTGGTTTCTCAATTGTGATTC 57.525 29.630 10.79 7.28 44.26 2.52
3552 3640 9.474920 GAATTGTAATTGGTTTCTCAATTGTGA 57.525 29.630 5.13 5.66 44.26 3.58
3609 3697 0.179018 AGTCACTTCAAGCCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
4161 4249 1.002544 GACAAGAGGACCCAAGGAGTG 59.997 57.143 0.00 0.00 0.00 3.51
4163 4251 1.277557 CAGACAAGAGGACCCAAGGAG 59.722 57.143 0.00 0.00 0.00 3.69
4283 4371 1.202371 CGTATGTCGCAGGTACACCAT 60.202 52.381 0.38 0.00 38.89 3.55
4284 4372 0.171679 CGTATGTCGCAGGTACACCA 59.828 55.000 0.38 0.00 38.89 4.17
4285 4373 0.171903 ACGTATGTCGCAGGTACACC 59.828 55.000 0.00 0.00 44.19 4.16
4286 4374 1.986698 AACGTATGTCGCAGGTACAC 58.013 50.000 0.00 0.00 44.19 2.90
4287 4375 3.191162 ACTTAACGTATGTCGCAGGTACA 59.809 43.478 0.00 0.00 44.19 2.90
4288 4376 3.762779 ACTTAACGTATGTCGCAGGTAC 58.237 45.455 0.00 0.00 44.19 3.34
4289 4377 3.439825 TGACTTAACGTATGTCGCAGGTA 59.560 43.478 0.00 0.00 44.19 3.08
4330 4418 8.790718 AGCATATGACAACATTAGAATGAATCC 58.209 33.333 6.97 0.00 39.67 3.01
4341 4429 7.050377 AGTTACTGCTAGCATATGACAACATT 58.950 34.615 19.72 0.00 37.87 2.71
4359 4447 6.925211 TCACTAGATGAAGACCAAGTTACTG 58.075 40.000 0.00 0.00 33.02 2.74
4392 4480 5.591877 AGTTCATAGACAATGGGAATGCTTC 59.408 40.000 0.00 0.00 36.15 3.86
4507 4595 6.955407 GGCTTTCGAAAAATTAATCAATGTGC 59.045 34.615 12.41 6.28 0.00 4.57
4525 4613 4.963276 TTCTTTATCCATGTGGCTTTCG 57.037 40.909 0.00 0.00 34.44 3.46
4542 4630 9.200817 TGCAATAATAAGCTAAAGGGATTTCTT 57.799 29.630 0.00 0.00 0.00 2.52
4588 4676 6.058973 GTAGCGACGGCAAGCTATAACTTG 62.059 50.000 10.89 10.89 46.07 3.16
4595 4683 1.138883 CAGTAGCGACGGCAAGCTA 59.861 57.895 0.00 0.00 44.15 3.32
4596 4684 2.125912 CAGTAGCGACGGCAAGCT 60.126 61.111 0.00 0.00 46.53 3.74
4597 4685 2.432628 ACAGTAGCGACGGCAAGC 60.433 61.111 0.00 0.00 43.41 4.01
4598 4686 1.073216 CAGACAGTAGCGACGGCAAG 61.073 60.000 0.00 0.00 43.41 4.01
4599 4687 1.080772 CAGACAGTAGCGACGGCAA 60.081 57.895 0.00 0.00 43.41 4.52
4600 4688 2.566529 CAGACAGTAGCGACGGCA 59.433 61.111 0.00 0.00 43.41 5.69
4601 4689 2.881352 GCAGACAGTAGCGACGGC 60.881 66.667 0.00 0.00 40.37 5.68
4602 4690 2.202623 GGCAGACAGTAGCGACGG 60.203 66.667 0.00 0.00 0.00 4.79
4603 4691 1.801913 GTGGCAGACAGTAGCGACG 60.802 63.158 0.00 0.00 30.18 5.12
4937 5025 1.771646 GGAAAGGGGGTAGTTGGCA 59.228 57.895 0.00 0.00 0.00 4.92
5284 5373 2.298661 CCGTTAACCCAGCTCCCCT 61.299 63.158 0.00 0.00 0.00 4.79
5320 5409 6.672218 TCATCTATTTTGGAACAGAGGGAGTA 59.328 38.462 0.00 0.00 42.39 2.59
5321 5410 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
5322 5411 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
5323 5412 5.339200 GGTCATCTATTTTGGAACAGAGGGA 60.339 44.000 0.00 0.00 42.39 4.20
5324 5413 4.884164 GGTCATCTATTTTGGAACAGAGGG 59.116 45.833 0.00 0.00 42.39 4.30
5325 5414 4.884164 GGGTCATCTATTTTGGAACAGAGG 59.116 45.833 0.00 0.00 42.39 3.69
5326 5415 5.500234 TGGGTCATCTATTTTGGAACAGAG 58.500 41.667 0.00 0.00 42.39 3.35
5327 5416 5.512942 TGGGTCATCTATTTTGGAACAGA 57.487 39.130 0.00 0.00 42.39 3.41
5328 5417 5.711976 AGTTGGGTCATCTATTTTGGAACAG 59.288 40.000 0.00 0.00 42.39 3.16
5329 5418 5.640147 AGTTGGGTCATCTATTTTGGAACA 58.360 37.500 0.00 0.00 0.00 3.18
5330 5419 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5331 5420 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5332 5421 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5333 5422 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5337 5426 9.975218 AGTTATTACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
5338 5427 9.975218 AAGTTATTACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
5339 5428 9.802039 AAAGTTATTACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
5340 5429 8.576442 CAAAGTTATTACAAAGTTGGGTCATCT 58.424 33.333 0.00 0.00 0.00 2.90
5341 5430 8.357402 ACAAAGTTATTACAAAGTTGGGTCATC 58.643 33.333 0.00 0.00 0.00 2.92
5342 5431 8.245195 ACAAAGTTATTACAAAGTTGGGTCAT 57.755 30.769 0.00 0.00 0.00 3.06
5343 5432 7.648039 ACAAAGTTATTACAAAGTTGGGTCA 57.352 32.000 0.00 0.00 0.00 4.02
5344 5433 8.843262 AGTACAAAGTTATTACAAAGTTGGGTC 58.157 33.333 0.00 0.00 0.00 4.46
5345 5434 8.756486 AGTACAAAGTTATTACAAAGTTGGGT 57.244 30.769 0.00 0.00 0.00 4.51
5380 5469 9.696917 GTTCCAAAATAGATGACTCAATTTTGT 57.303 29.630 18.01 0.00 43.14 2.83
5381 5470 8.853345 CGTTCCAAAATAGATGACTCAATTTTG 58.147 33.333 15.00 15.00 43.77 2.44
5382 5471 8.028938 CCGTTCCAAAATAGATGACTCAATTTT 58.971 33.333 0.00 0.00 33.07 1.82
5383 5472 7.393234 TCCGTTCCAAAATAGATGACTCAATTT 59.607 33.333 0.00 0.00 0.00 1.82
5384 5473 6.884295 TCCGTTCCAAAATAGATGACTCAATT 59.116 34.615 0.00 0.00 0.00 2.32
5385 5474 6.414732 TCCGTTCCAAAATAGATGACTCAAT 58.585 36.000 0.00 0.00 0.00 2.57
5386 5475 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5387 5476 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5388 5477 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5389 5478 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5390 5479 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5391 5480 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5392 5481 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5393 5482 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5394 5483 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5395 5484 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5396 5485 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
5397 5486 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
5398 5487 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
5399 5488 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
5400 5489 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
5401 5490 2.314071 TTTCTACTCCCTCCGTTCCA 57.686 50.000 0.00 0.00 0.00 3.53
5402 5491 3.908643 ATTTTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
5403 5492 6.315642 CCTTTTATTTTCTACTCCCTCCGTTC 59.684 42.308 0.00 0.00 0.00 3.95
5404 5493 6.178324 CCTTTTATTTTCTACTCCCTCCGTT 58.822 40.000 0.00 0.00 0.00 4.44
5405 5494 5.338953 CCCTTTTATTTTCTACTCCCTCCGT 60.339 44.000 0.00 0.00 0.00 4.69
5406 5495 5.123936 CCCTTTTATTTTCTACTCCCTCCG 58.876 45.833 0.00 0.00 0.00 4.63
5407 5496 5.193124 TCCCCTTTTATTTTCTACTCCCTCC 59.807 44.000 0.00 0.00 0.00 4.30
5408 5497 6.323210 TCCCCTTTTATTTTCTACTCCCTC 57.677 41.667 0.00 0.00 0.00 4.30
5409 5498 6.730001 TTCCCCTTTTATTTTCTACTCCCT 57.270 37.500 0.00 0.00 0.00 4.20
5410 5499 7.310237 GGTTTTCCCCTTTTATTTTCTACTCCC 60.310 40.741 0.00 0.00 0.00 4.30
5411 5500 7.609056 GGTTTTCCCCTTTTATTTTCTACTCC 58.391 38.462 0.00 0.00 0.00 3.85
5455 5544 7.710907 GCAGTATAATAGTGAACAGACCAATCA 59.289 37.037 0.00 0.00 0.00 2.57
5476 5565 7.415653 CGGCATCTCTTCATATACATAGCAGTA 60.416 40.741 0.00 0.00 0.00 2.74
5487 5576 3.900601 AGAAGGTCGGCATCTCTTCATAT 59.099 43.478 6.54 0.00 38.35 1.78
5626 5716 7.877612 CCAGAAACTTTGGCTTGGTAATAAAAT 59.122 33.333 0.00 0.00 0.00 1.82
5748 5838 5.414454 CCTAACCTGAATCGGTGAAAATTCA 59.586 40.000 0.00 0.00 39.06 2.57
5760 5850 4.471747 AGAGGTCCTTTCCTAACCTGAATC 59.528 45.833 0.00 0.00 43.43 2.52
5808 5901 2.301296 AGCTCAAGTGTACAGCTCATGT 59.699 45.455 0.00 0.00 39.37 3.21
5810 5903 2.301296 ACAGCTCAAGTGTACAGCTCAT 59.699 45.455 3.73 0.00 41.73 2.90
5818 5911 4.583073 TGTCTCAAGTACAGCTCAAGTGTA 59.417 41.667 0.00 0.00 0.00 2.90
5821 5914 3.891977 TCTGTCTCAAGTACAGCTCAAGT 59.108 43.478 0.00 0.00 43.30 3.16
5822 5915 4.022416 ACTCTGTCTCAAGTACAGCTCAAG 60.022 45.833 0.00 0.00 43.30 3.02
5823 5916 3.891977 ACTCTGTCTCAAGTACAGCTCAA 59.108 43.478 0.00 0.00 43.30 3.02
5824 5917 3.491342 ACTCTGTCTCAAGTACAGCTCA 58.509 45.455 0.00 0.00 43.30 4.26
5826 5919 3.891977 TGAACTCTGTCTCAAGTACAGCT 59.108 43.478 0.00 0.00 43.30 4.24
5827 5920 4.244425 TGAACTCTGTCTCAAGTACAGC 57.756 45.455 0.00 0.00 43.30 4.40
5828 5921 6.266168 AGATGAACTCTGTCTCAAGTACAG 57.734 41.667 0.00 0.00 44.66 2.74
5829 5922 6.943146 AGTAGATGAACTCTGTCTCAAGTACA 59.057 38.462 0.00 0.00 35.28 2.90
5830 5923 7.119992 TCAGTAGATGAACTCTGTCTCAAGTAC 59.880 40.741 0.00 0.00 34.02 2.73
5831 5924 7.168905 TCAGTAGATGAACTCTGTCTCAAGTA 58.831 38.462 0.00 0.00 34.02 2.24
5832 5925 6.007076 TCAGTAGATGAACTCTGTCTCAAGT 58.993 40.000 0.00 0.00 34.02 3.16
5833 5926 6.507958 TCAGTAGATGAACTCTGTCTCAAG 57.492 41.667 0.00 0.00 34.02 3.02
5834 5927 7.831690 ACTATCAGTAGATGAACTCTGTCTCAA 59.168 37.037 0.00 0.00 42.53 3.02
5835 5928 7.342581 ACTATCAGTAGATGAACTCTGTCTCA 58.657 38.462 0.00 0.00 42.53 3.27
5836 5929 7.715249 AGACTATCAGTAGATGAACTCTGTCTC 59.285 40.741 0.00 0.00 42.53 3.36
5837 5930 7.498900 CAGACTATCAGTAGATGAACTCTGTCT 59.501 40.741 0.00 0.00 42.53 3.41
5838 5931 7.639039 CAGACTATCAGTAGATGAACTCTGTC 58.361 42.308 0.00 0.00 42.53 3.51
5839 5932 6.039270 GCAGACTATCAGTAGATGAACTCTGT 59.961 42.308 0.00 0.00 42.53 3.41
5840 5933 6.039159 TGCAGACTATCAGTAGATGAACTCTG 59.961 42.308 0.00 0.00 42.53 3.35
6009 6102 1.981256 AACGAAAAGTGCCACCTCAT 58.019 45.000 0.00 0.00 0.00 2.90
6010 6103 1.403679 CAAACGAAAAGTGCCACCTCA 59.596 47.619 0.00 0.00 0.00 3.86
6011 6104 1.404035 ACAAACGAAAAGTGCCACCTC 59.596 47.619 0.00 0.00 0.00 3.85
6013 6106 2.287393 AACAAACGAAAAGTGCCACC 57.713 45.000 0.00 0.00 0.00 4.61
6014 6107 3.507786 AGAAACAAACGAAAAGTGCCAC 58.492 40.909 0.00 0.00 0.00 5.01
6016 6109 5.974751 TGATAAGAAACAAACGAAAAGTGCC 59.025 36.000 0.00 0.00 0.00 5.01
6017 6110 7.378461 TCATGATAAGAAACAAACGAAAAGTGC 59.622 33.333 0.00 0.00 0.00 4.40
6018 6111 8.781067 TCATGATAAGAAACAAACGAAAAGTG 57.219 30.769 0.00 0.00 0.00 3.16
6019 6112 8.076178 CCTCATGATAAGAAACAAACGAAAAGT 58.924 33.333 0.00 0.00 0.00 2.66
6048 6154 8.870160 TTCAGTAAAATCAACCTGTCAAAATG 57.130 30.769 0.00 0.00 0.00 2.32
6049 6155 8.912988 TCTTCAGTAAAATCAACCTGTCAAAAT 58.087 29.630 0.00 0.00 0.00 1.82
6050 6156 8.287439 TCTTCAGTAAAATCAACCTGTCAAAA 57.713 30.769 0.00 0.00 0.00 2.44
6180 6289 4.093011 AGAAATATCTATCGCCTCTGCCT 58.907 43.478 0.00 0.00 32.88 4.75
6189 6298 8.094548 TGAACCATGGGTTAGAAATATCTATCG 58.905 37.037 18.09 0.00 46.95 2.92
6196 6305 7.556275 GTGAAGATGAACCATGGGTTAGAAATA 59.444 37.037 18.09 0.00 46.95 1.40
6244 6353 5.509832 AAGAATCTATGATGCCAGCCATA 57.490 39.130 0.00 0.00 33.29 2.74
6245 6354 4.383931 AAGAATCTATGATGCCAGCCAT 57.616 40.909 0.00 0.00 36.70 4.40
6280 6389 1.926561 TCTTCTTGATCGCACGATGG 58.073 50.000 10.75 1.08 34.60 3.51
6313 6422 2.987232 AGTTGGATTTACCCGAGCTTC 58.013 47.619 0.00 0.00 38.00 3.86
6332 6441 1.015109 CTGCCTACATGCTGCTCAAG 58.985 55.000 0.00 0.00 0.00 3.02
6344 6453 1.437986 CGTCCTACTGGCTGCCTAC 59.562 63.158 21.03 7.39 0.00 3.18
6456 6576 8.616076 AGGATCAAATAATTAGCAAAAGTCGAG 58.384 33.333 0.00 0.00 0.00 4.04
6482 6608 7.813148 CGAGAAACAAGAAACCTCTATGTTCTA 59.187 37.037 0.00 0.00 34.56 2.10
6507 6633 0.229753 GCGATCCGATTGCTTACACG 59.770 55.000 12.73 0.00 36.71 4.49
6567 6714 5.577164 CGAGTTGAGGGTTTTGAGTATGTAG 59.423 44.000 0.00 0.00 0.00 2.74
6591 6738 3.626028 ATGGAGTTTTCAGCAACGTTC 57.374 42.857 0.00 0.00 0.00 3.95
6666 6819 4.320494 GCGGCCTGACAGAAATAATATTGG 60.320 45.833 3.32 0.00 0.00 3.16
6672 6825 0.742990 CGGCGGCCTGACAGAAATAA 60.743 55.000 18.34 0.00 0.00 1.40
6693 6849 8.417106 TGCTGTATTTGGTCAAGTTTTCATAAA 58.583 29.630 0.00 0.00 0.00 1.40
6718 6874 2.491693 ACCAAATCTACCGGCAAATGTG 59.508 45.455 0.00 0.00 0.00 3.21
6732 6888 1.154225 CGCAAGTCGCCACCAAATC 60.154 57.895 0.00 0.00 37.30 2.17
6825 7002 0.673644 AAGGCGACGAATCCACAAGG 60.674 55.000 0.00 0.00 0.00 3.61
6861 7042 0.951040 CCTTCTCCGCGATAATGCCC 60.951 60.000 8.23 0.00 0.00 5.36
6893 7074 1.503818 GAGCGGCCACGTGAAAAGAA 61.504 55.000 19.30 0.00 43.45 2.52
6926 7117 3.371097 GAGCGTGCCTCGGATTGGA 62.371 63.158 0.99 0.00 40.26 3.53
6963 7154 0.552848 GGGTGATGATGTGATGGGGT 59.447 55.000 0.00 0.00 0.00 4.95
7001 7193 4.100189 TCCATCCCTCTTTCTTTCGATCTC 59.900 45.833 0.00 0.00 0.00 2.75
7021 7258 2.675423 CCTCCGTCTCCGTGTCCA 60.675 66.667 0.00 0.00 0.00 4.02
7074 7320 0.911769 TGAGCACATTCCCCCACTAG 59.088 55.000 0.00 0.00 0.00 2.57
7075 7321 1.212688 CATGAGCACATTCCCCCACTA 59.787 52.381 0.00 0.00 34.15 2.74
7133 7386 0.506932 CGGCACACTACACTTTGACG 59.493 55.000 0.00 0.00 0.00 4.35
7134 7387 1.260561 CACGGCACACTACACTTTGAC 59.739 52.381 0.00 0.00 0.00 3.18
7135 7388 1.577468 CACGGCACACTACACTTTGA 58.423 50.000 0.00 0.00 0.00 2.69
7136 7389 0.586319 CCACGGCACACTACACTTTG 59.414 55.000 0.00 0.00 0.00 2.77
7137 7390 0.466543 TCCACGGCACACTACACTTT 59.533 50.000 0.00 0.00 0.00 2.66
7138 7391 0.685097 ATCCACGGCACACTACACTT 59.315 50.000 0.00 0.00 0.00 3.16
7140 7393 0.739813 GGATCCACGGCACACTACAC 60.740 60.000 6.95 0.00 0.00 2.90
7166 7425 0.788276 CGCATCGCATCGCATCATTC 60.788 55.000 0.00 0.00 0.00 2.67
7240 7507 1.602327 GACCGGGACACTCCACCTAC 61.602 65.000 6.32 0.00 38.64 3.18
7241 7508 1.304713 GACCGGGACACTCCACCTA 60.305 63.158 6.32 0.00 38.64 3.08
7284 7561 4.037446 GGTGTCCAGAAACATAGTTTTGCA 59.963 41.667 0.00 0.00 0.00 4.08
7300 7577 1.302431 CGAACTGGCATGGTGTCCA 60.302 57.895 0.00 0.00 38.19 4.02
7301 7578 1.298859 GACGAACTGGCATGGTGTCC 61.299 60.000 0.00 0.00 0.00 4.02
7302 7579 0.320771 AGACGAACTGGCATGGTGTC 60.321 55.000 0.00 0.00 0.00 3.67
7303 7580 0.973632 TAGACGAACTGGCATGGTGT 59.026 50.000 0.00 0.00 0.00 4.16
7304 7581 1.066858 AGTAGACGAACTGGCATGGTG 60.067 52.381 0.00 0.00 0.00 4.17
7305 7582 1.204941 GAGTAGACGAACTGGCATGGT 59.795 52.381 0.00 0.00 0.00 3.55
7306 7583 1.927895 GAGTAGACGAACTGGCATGG 58.072 55.000 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.