Multiple sequence alignment - TraesCS4B01G176900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G176900 chr4B 100.000 3857 0 0 1 3857 387400537 387404393 0.000000e+00 7123.0
1 TraesCS4B01G176900 chr4D 94.489 2468 88 12 890 3337 309943445 309945884 0.000000e+00 3760.0
2 TraesCS4B01G176900 chr4D 88.933 253 12 1 3605 3857 309945879 309946115 8.100000e-77 298.0
3 TraesCS4B01G176900 chr4A 92.037 2135 86 31 880 2969 164688555 164686460 0.000000e+00 2924.0
4 TraesCS4B01G176900 chr4A 93.863 277 17 0 3334 3610 319834297 319834573 5.960000e-113 418.0
5 TraesCS4B01G176900 chr6B 93.651 882 45 7 1 880 192055610 192056482 0.000000e+00 1308.0
6 TraesCS4B01G176900 chr6B 92.081 884 65 5 1 883 473732507 473733386 0.000000e+00 1240.0
7 TraesCS4B01G176900 chr6B 94.424 269 15 0 3336 3604 35829639 35829907 7.710000e-112 414.0
8 TraesCS4B01G176900 chr3B 93.205 883 58 2 1 883 629589995 629590875 0.000000e+00 1297.0
9 TraesCS4B01G176900 chr5B 93.182 880 52 7 4 882 657141757 657140885 0.000000e+00 1286.0
10 TraesCS4B01G176900 chr5B 92.865 883 55 7 1 882 282066305 282067180 0.000000e+00 1275.0
11 TraesCS4B01G176900 chr5B 93.294 850 53 4 4 851 48853567 48852720 0.000000e+00 1251.0
12 TraesCS4B01G176900 chr5B 94.424 269 15 0 3336 3604 484894596 484894864 7.710000e-112 414.0
13 TraesCS4B01G176900 chr2B 92.994 885 56 6 4 886 759432301 759431421 0.000000e+00 1286.0
14 TraesCS4B01G176900 chr2B 92.955 880 54 7 4 880 381544343 381545217 0.000000e+00 1275.0
15 TraesCS4B01G176900 chr2B 77.000 200 44 2 1296 1494 93408829 93409027 3.150000e-21 113.0
16 TraesCS4B01G176900 chr2B 77.000 200 44 2 1296 1494 94251055 94250857 3.150000e-21 113.0
17 TraesCS4B01G176900 chr2B 90.323 62 6 0 1435 1496 93804579 93804518 8.880000e-12 82.4
18 TraesCS4B01G176900 chr2B 90.323 62 6 0 1435 1496 93882616 93882555 8.880000e-12 82.4
19 TraesCS4B01G176900 chr2B 95.745 47 1 1 835 880 281872830 281872784 1.490000e-09 75.0
20 TraesCS4B01G176900 chr2B 88.333 60 7 0 1153 1212 94090375 94090316 5.350000e-09 73.1
21 TraesCS4B01G176900 chr7B 92.404 882 64 2 1 882 635062721 635063599 0.000000e+00 1254.0
22 TraesCS4B01G176900 chr7D 92.833 293 18 3 3313 3605 452445669 452445958 4.610000e-114 422.0
23 TraesCS4B01G176900 chr3A 94.815 270 13 1 3336 3604 382103220 382103489 1.660000e-113 420.0
24 TraesCS4B01G176900 chr3A 94.424 269 15 0 3336 3604 28893634 28893902 7.710000e-112 414.0
25 TraesCS4B01G176900 chr3A 86.158 354 40 5 2993 3337 7253960 7253607 1.310000e-99 374.0
26 TraesCS4B01G176900 chr3A 91.129 248 21 1 3610 3857 7253603 7253357 6.170000e-88 335.0
27 TraesCS4B01G176900 chr3D 94.444 270 14 1 3335 3604 610203815 610203547 7.710000e-112 414.0
28 TraesCS4B01G176900 chr3D 93.190 279 18 1 3332 3610 390069283 390069560 3.590000e-110 409.0
29 TraesCS4B01G176900 chr3D 92.806 278 20 0 3328 3605 75350872 75351149 1.670000e-108 403.0
30 TraesCS4B01G176900 chr3D 90.763 249 21 2 3610 3857 1772640 1772887 7.990000e-87 331.0
31 TraesCS4B01G176900 chr2A 75.500 200 47 2 1296 1494 60283503 60283305 3.170000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G176900 chr4B 387400537 387404393 3856 False 7123.0 7123 100.0000 1 3857 1 chr4B.!!$F1 3856
1 TraesCS4B01G176900 chr4D 309943445 309946115 2670 False 2029.0 3760 91.7110 890 3857 2 chr4D.!!$F1 2967
2 TraesCS4B01G176900 chr4A 164686460 164688555 2095 True 2924.0 2924 92.0370 880 2969 1 chr4A.!!$R1 2089
3 TraesCS4B01G176900 chr6B 192055610 192056482 872 False 1308.0 1308 93.6510 1 880 1 chr6B.!!$F2 879
4 TraesCS4B01G176900 chr6B 473732507 473733386 879 False 1240.0 1240 92.0810 1 883 1 chr6B.!!$F3 882
5 TraesCS4B01G176900 chr3B 629589995 629590875 880 False 1297.0 1297 93.2050 1 883 1 chr3B.!!$F1 882
6 TraesCS4B01G176900 chr5B 657140885 657141757 872 True 1286.0 1286 93.1820 4 882 1 chr5B.!!$R2 878
7 TraesCS4B01G176900 chr5B 282066305 282067180 875 False 1275.0 1275 92.8650 1 882 1 chr5B.!!$F1 881
8 TraesCS4B01G176900 chr5B 48852720 48853567 847 True 1251.0 1251 93.2940 4 851 1 chr5B.!!$R1 847
9 TraesCS4B01G176900 chr2B 759431421 759432301 880 True 1286.0 1286 92.9940 4 886 1 chr2B.!!$R6 882
10 TraesCS4B01G176900 chr2B 381544343 381545217 874 False 1275.0 1275 92.9550 4 880 1 chr2B.!!$F2 876
11 TraesCS4B01G176900 chr7B 635062721 635063599 878 False 1254.0 1254 92.4040 1 882 1 chr7B.!!$F1 881
12 TraesCS4B01G176900 chr3A 7253357 7253960 603 True 354.5 374 88.6435 2993 3857 2 chr3A.!!$R1 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 323 0.610174 AAGGCAGCTCGACATCAAGA 59.390 50.0 0.00 0.0 0.0 3.02 F
1549 1589 0.027455 TGCGCTTGAGTGAAAACACG 59.973 50.0 9.73 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1648 0.032540 CAGGAAGCCCAACAAAGCAC 59.967 55.0 0.00 0.00 33.88 4.40 R
3389 3460 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.0 20.33 16.33 45.25 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.989909 TGATGACATTCGTGATGCCTT 58.010 42.857 0.00 0.00 39.47 4.35
186 188 1.965754 GCTTGAGATGGAGGAGGCGT 61.966 60.000 0.00 0.00 0.00 5.68
321 323 0.610174 AAGGCAGCTCGACATCAAGA 59.390 50.000 0.00 0.00 0.00 3.02
338 341 4.284550 ACCACCAATGCCGCCACT 62.285 61.111 0.00 0.00 0.00 4.00
406 409 0.681564 ATGAGCGAGAAGACGAGGGT 60.682 55.000 0.00 0.00 35.09 4.34
471 475 1.293924 GAACTAGGTCGTCCGATCGA 58.706 55.000 18.66 0.00 39.05 3.59
507 512 1.426251 TTGGAGGCTGTCATGGGTGT 61.426 55.000 0.00 0.00 0.00 4.16
569 576 2.524306 ACATTCATTTTGAAGGCCGGA 58.476 42.857 5.05 0.00 41.38 5.14
628 635 3.456380 ACCATACATTTTGGAGGCTGT 57.544 42.857 0.00 0.00 37.69 4.40
629 636 3.091545 ACCATACATTTTGGAGGCTGTG 58.908 45.455 0.00 0.00 37.69 3.66
744 758 2.822399 GCGGACAGGATGGGGTAG 59.178 66.667 0.00 0.00 43.62 3.18
802 816 3.402681 CAGGACAGGCCCGGACAT 61.403 66.667 0.73 0.00 37.37 3.06
813 830 2.374525 CCGGACATGACCCCATCCA 61.375 63.158 8.69 0.00 0.00 3.41
819 836 1.620589 ATGACCCCATCCACTGCCT 60.621 57.895 0.00 0.00 0.00 4.75
899 916 4.614078 GCCTAAGAGCTAGTAGTACATGCG 60.614 50.000 2.52 0.00 0.00 4.73
939 957 7.652524 TGTTGCCTATAAATATGCTTTGGAA 57.347 32.000 0.00 0.00 0.00 3.53
940 958 7.488322 TGTTGCCTATAAATATGCTTTGGAAC 58.512 34.615 0.00 0.00 0.00 3.62
941 959 6.648879 TGCCTATAAATATGCTTTGGAACC 57.351 37.500 0.00 0.00 0.00 3.62
1179 1209 2.444140 GCCTCCCTTCTCCGGCTA 60.444 66.667 0.00 0.00 39.42 3.93
1248 1278 5.074515 TCTGTTATTCCCTTGGTCCTCTTTT 59.925 40.000 0.00 0.00 0.00 2.27
1249 1279 5.321927 TGTTATTCCCTTGGTCCTCTTTTC 58.678 41.667 0.00 0.00 0.00 2.29
1251 1281 3.508845 TTCCCTTGGTCCTCTTTTCAG 57.491 47.619 0.00 0.00 0.00 3.02
1252 1282 2.418669 TCCCTTGGTCCTCTTTTCAGT 58.581 47.619 0.00 0.00 0.00 3.41
1253 1283 3.593942 TCCCTTGGTCCTCTTTTCAGTA 58.406 45.455 0.00 0.00 0.00 2.74
1255 1285 4.601857 TCCCTTGGTCCTCTTTTCAGTATT 59.398 41.667 0.00 0.00 0.00 1.89
1258 1291 6.472887 CCTTGGTCCTCTTTTCAGTATTGTA 58.527 40.000 0.00 0.00 0.00 2.41
1264 1297 8.847196 GGTCCTCTTTTCAGTATTGTAAACTTT 58.153 33.333 0.00 0.00 0.00 2.66
1432 1469 2.751436 TGGAGCTGATTTGCCCGC 60.751 61.111 0.00 0.00 0.00 6.13
1501 1538 3.482786 GTCGTCGACGTAAGCTAAAAGA 58.517 45.455 34.40 10.55 45.62 2.52
1545 1585 2.033299 CCTTCTTGCGCTTGAGTGAAAA 59.967 45.455 9.73 0.00 0.00 2.29
1546 1586 2.755836 TCTTGCGCTTGAGTGAAAAC 57.244 45.000 9.73 0.00 0.00 2.43
1548 1588 2.111756 CTTGCGCTTGAGTGAAAACAC 58.888 47.619 9.73 0.00 0.00 3.32
1549 1589 0.027455 TGCGCTTGAGTGAAAACACG 59.973 50.000 9.73 0.00 0.00 4.49
1550 1590 1.262166 GCGCTTGAGTGAAAACACGC 61.262 55.000 0.00 0.00 38.17 5.34
1551 1591 0.986874 CGCTTGAGTGAAAACACGCG 60.987 55.000 3.53 3.53 44.84 6.01
1556 1600 0.111835 GAGTGAAAACACGCGTCGTC 60.112 55.000 9.86 4.81 38.32 4.20
1586 1630 3.804325 CGGAATGGAAGTACATGTAGCAG 59.196 47.826 5.62 0.00 0.00 4.24
1601 1645 3.832490 TGTAGCAGGTGACAATCAGTACT 59.168 43.478 0.00 0.00 0.00 2.73
1602 1646 5.014202 TGTAGCAGGTGACAATCAGTACTA 58.986 41.667 0.00 0.00 0.00 1.82
1603 1647 4.457834 AGCAGGTGACAATCAGTACTAC 57.542 45.455 0.00 0.00 0.00 2.73
1604 1648 3.119459 AGCAGGTGACAATCAGTACTACG 60.119 47.826 0.00 0.00 0.00 3.51
1605 1649 3.367087 GCAGGTGACAATCAGTACTACGT 60.367 47.826 0.00 0.00 0.00 3.57
1606 1650 4.166523 CAGGTGACAATCAGTACTACGTG 58.833 47.826 0.00 0.00 0.00 4.49
1607 1651 2.921754 GGTGACAATCAGTACTACGTGC 59.078 50.000 0.00 0.00 0.00 5.34
1608 1652 3.367087 GGTGACAATCAGTACTACGTGCT 60.367 47.826 0.00 0.00 0.00 4.40
1609 1653 4.235360 GTGACAATCAGTACTACGTGCTT 58.765 43.478 0.00 0.00 0.00 3.91
1610 1654 4.684703 GTGACAATCAGTACTACGTGCTTT 59.315 41.667 0.00 0.00 0.00 3.51
1611 1655 4.684242 TGACAATCAGTACTACGTGCTTTG 59.316 41.667 0.00 0.00 0.00 2.77
1612 1656 4.628074 ACAATCAGTACTACGTGCTTTGT 58.372 39.130 0.00 0.00 29.28 2.83
1613 1657 5.054477 ACAATCAGTACTACGTGCTTTGTT 58.946 37.500 0.00 0.00 29.65 2.83
1614 1658 5.050363 ACAATCAGTACTACGTGCTTTGTTG 60.050 40.000 0.00 0.00 29.65 3.33
1615 1659 3.386486 TCAGTACTACGTGCTTTGTTGG 58.614 45.455 0.00 0.00 0.00 3.77
1616 1660 2.478894 CAGTACTACGTGCTTTGTTGGG 59.521 50.000 0.00 0.00 0.00 4.12
1617 1661 1.196127 GTACTACGTGCTTTGTTGGGC 59.804 52.381 0.00 0.00 0.00 5.36
1618 1662 0.179029 ACTACGTGCTTTGTTGGGCT 60.179 50.000 0.00 0.00 0.00 5.19
1730 1774 2.526110 GGCCCCAACTCCAACCTT 59.474 61.111 0.00 0.00 0.00 3.50
1809 1853 0.247814 CTCAGGTAAAATGCGCTGCG 60.248 55.000 19.17 19.17 0.00 5.18
1880 1930 5.371115 TGCATGCATTGATAGATCACATG 57.629 39.130 18.46 13.39 39.67 3.21
2422 2483 1.136984 CCGGTACAGCTCTGTCGAC 59.863 63.158 9.11 9.11 43.74 4.20
2548 2609 1.888018 GACATCGACGGGACCTTCA 59.112 57.895 0.00 0.00 0.00 3.02
2727 2788 2.522436 TCCACGGACGGTCTGGTT 60.522 61.111 20.38 0.00 0.00 3.67
2730 2791 1.445582 CACGGACGGTCTGGTTAGC 60.446 63.158 20.38 0.00 0.00 3.09
2924 2985 1.608283 GGAAACGGGAAGTGAGACTGG 60.608 57.143 0.00 0.00 0.00 4.00
2938 2999 5.721960 AGTGAGACTGGGTCTTTATGTACAT 59.278 40.000 13.93 13.93 43.53 2.29
2939 3000 5.812642 GTGAGACTGGGTCTTTATGTACATG 59.187 44.000 18.81 1.86 43.53 3.21
2940 3001 4.770795 AGACTGGGTCTTTATGTACATGC 58.229 43.478 18.81 3.59 40.28 4.06
2941 3002 4.225042 AGACTGGGTCTTTATGTACATGCA 59.775 41.667 18.81 1.97 40.28 3.96
2972 3034 4.638421 CCGAGTTAAATGCATTGGTTCCTA 59.362 41.667 13.82 0.00 0.00 2.94
3029 3091 7.827236 TCCATTACTTAACCAAGGTCATTACAG 59.173 37.037 0.00 0.00 35.97 2.74
3040 3102 4.433615 AGGTCATTACAGTCATGCTTACG 58.566 43.478 0.00 0.00 0.00 3.18
3091 3156 1.392589 AACCACACTGCTGTCTTTGG 58.607 50.000 11.83 11.83 0.00 3.28
3102 3167 1.218316 GTCTTTGGGAGCGATCGGT 59.782 57.895 21.42 21.42 0.00 4.69
3112 3177 2.797278 GCGATCGGTCCATCTGGGT 61.797 63.158 18.30 0.00 38.11 4.51
3223 3290 2.624495 AGCTGCCATGGGTGATCTATA 58.376 47.619 15.13 0.00 0.00 1.31
3232 3299 6.268617 GCCATGGGTGATCTATATATAGCAGA 59.731 42.308 15.13 0.81 0.00 4.26
3238 3305 7.777910 GGGTGATCTATATATAGCAGAGTCACT 59.222 40.741 23.00 0.00 32.92 3.41
3250 3317 2.886081 AGAGTCACTGATCATTCACGC 58.114 47.619 0.00 0.00 0.00 5.34
3251 3318 1.929836 GAGTCACTGATCATTCACGCC 59.070 52.381 0.00 0.00 0.00 5.68
3274 3345 2.263077 CACCGCACAATCTGTCTCTAC 58.737 52.381 0.00 0.00 0.00 2.59
3281 3352 4.201960 GCACAATCTGTCTCTACGATGAGA 60.202 45.833 7.75 7.75 40.39 3.27
3328 3399 2.156051 GAAACTCCCTCCGTGAGCGT 62.156 60.000 0.00 0.00 36.15 5.07
3331 3402 4.373116 TCCCTCCGTGAGCGTTGC 62.373 66.667 0.00 0.00 36.15 4.17
3333 3404 4.680237 CCTCCGTGAGCGTTGCCA 62.680 66.667 0.00 0.00 36.15 4.92
3334 3405 2.434884 CTCCGTGAGCGTTGCCAT 60.435 61.111 0.00 0.00 36.15 4.40
3335 3406 2.434185 TCCGTGAGCGTTGCCATC 60.434 61.111 0.00 0.00 36.15 3.51
3336 3407 2.434884 CCGTGAGCGTTGCCATCT 60.435 61.111 0.00 0.00 36.15 2.90
3337 3408 2.743752 CCGTGAGCGTTGCCATCTG 61.744 63.158 0.00 0.00 36.15 2.90
3338 3409 2.029288 CGTGAGCGTTGCCATCTGT 61.029 57.895 0.00 0.00 0.00 3.41
3339 3410 1.568612 CGTGAGCGTTGCCATCTGTT 61.569 55.000 0.00 0.00 0.00 3.16
3340 3411 0.593128 GTGAGCGTTGCCATCTGTTT 59.407 50.000 0.00 0.00 0.00 2.83
3341 3412 1.804151 GTGAGCGTTGCCATCTGTTTA 59.196 47.619 0.00 0.00 0.00 2.01
3342 3413 1.804151 TGAGCGTTGCCATCTGTTTAC 59.196 47.619 0.00 0.00 0.00 2.01
3343 3414 0.796312 AGCGTTGCCATCTGTTTACG 59.204 50.000 0.00 0.00 0.00 3.18
3344 3415 0.515564 GCGTTGCCATCTGTTTACGT 59.484 50.000 0.00 0.00 0.00 3.57
3345 3416 1.727880 GCGTTGCCATCTGTTTACGTA 59.272 47.619 0.00 0.00 0.00 3.57
3346 3417 2.350498 GCGTTGCCATCTGTTTACGTAT 59.650 45.455 0.00 0.00 0.00 3.06
3347 3418 3.552699 GCGTTGCCATCTGTTTACGTATA 59.447 43.478 0.00 0.00 0.00 1.47
3348 3419 4.033129 GCGTTGCCATCTGTTTACGTATAA 59.967 41.667 0.00 0.00 0.00 0.98
3349 3420 5.277154 GCGTTGCCATCTGTTTACGTATAAT 60.277 40.000 0.00 0.00 0.00 1.28
3350 3421 6.126741 CGTTGCCATCTGTTTACGTATAATG 58.873 40.000 0.00 0.00 0.00 1.90
3351 3422 6.237996 CGTTGCCATCTGTTTACGTATAATGT 60.238 38.462 0.00 0.00 0.00 2.71
3352 3423 6.597262 TGCCATCTGTTTACGTATAATGTG 57.403 37.500 0.00 0.00 0.00 3.21
3353 3424 5.007234 TGCCATCTGTTTACGTATAATGTGC 59.993 40.000 0.00 0.66 0.00 4.57
3354 3425 5.236478 GCCATCTGTTTACGTATAATGTGCT 59.764 40.000 0.00 0.00 0.00 4.40
3355 3426 6.649436 CCATCTGTTTACGTATAATGTGCTG 58.351 40.000 0.00 0.00 0.00 4.41
3356 3427 5.712217 TCTGTTTACGTATAATGTGCTGC 57.288 39.130 0.00 0.00 0.00 5.25
3357 3428 4.569162 TCTGTTTACGTATAATGTGCTGCC 59.431 41.667 0.00 0.00 0.00 4.85
3358 3429 4.509616 TGTTTACGTATAATGTGCTGCCT 58.490 39.130 0.00 0.00 0.00 4.75
3359 3430 5.662456 TGTTTACGTATAATGTGCTGCCTA 58.338 37.500 0.00 0.00 0.00 3.93
3360 3431 5.751509 TGTTTACGTATAATGTGCTGCCTAG 59.248 40.000 0.00 0.00 0.00 3.02
3361 3432 5.524971 TTACGTATAATGTGCTGCCTAGT 57.475 39.130 0.00 0.00 0.00 2.57
3362 3433 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
3363 3434 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
3364 3435 4.099573 ACGTATAATGTGCTGCCTAGTCTT 59.900 41.667 0.00 0.00 0.00 3.01
3365 3436 5.050490 CGTATAATGTGCTGCCTAGTCTTT 58.950 41.667 0.00 0.00 0.00 2.52
3366 3437 5.523916 CGTATAATGTGCTGCCTAGTCTTTT 59.476 40.000 0.00 0.00 0.00 2.27
3367 3438 6.037172 CGTATAATGTGCTGCCTAGTCTTTTT 59.963 38.462 0.00 0.00 0.00 1.94
3368 3439 4.773323 AATGTGCTGCCTAGTCTTTTTC 57.227 40.909 0.00 0.00 0.00 2.29
3369 3440 3.207265 TGTGCTGCCTAGTCTTTTTCA 57.793 42.857 0.00 0.00 0.00 2.69
3370 3441 2.878406 TGTGCTGCCTAGTCTTTTTCAC 59.122 45.455 0.00 0.00 0.00 3.18
3371 3442 2.226674 GTGCTGCCTAGTCTTTTTCACC 59.773 50.000 0.00 0.00 0.00 4.02
3372 3443 2.158682 TGCTGCCTAGTCTTTTTCACCA 60.159 45.455 0.00 0.00 0.00 4.17
3373 3444 2.485814 GCTGCCTAGTCTTTTTCACCAG 59.514 50.000 0.00 0.00 0.00 4.00
3374 3445 3.807209 GCTGCCTAGTCTTTTTCACCAGA 60.807 47.826 0.00 0.00 0.00 3.86
3375 3446 4.583871 CTGCCTAGTCTTTTTCACCAGAT 58.416 43.478 0.00 0.00 0.00 2.90
3376 3447 4.579869 TGCCTAGTCTTTTTCACCAGATC 58.420 43.478 0.00 0.00 0.00 2.75
3377 3448 3.619038 GCCTAGTCTTTTTCACCAGATCG 59.381 47.826 0.00 0.00 0.00 3.69
3378 3449 4.184629 CCTAGTCTTTTTCACCAGATCGG 58.815 47.826 2.55 2.55 42.50 4.18
3390 3461 1.200020 CCAGATCGGTCTTTTGGTTGC 59.800 52.381 0.00 0.00 30.42 4.17
3391 3462 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
3392 3463 2.489329 CAGATCGGTCTTTTGGTTGCAT 59.511 45.455 0.00 0.00 30.42 3.96
3393 3464 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
3394 3465 2.791383 TCGGTCTTTTGGTTGCATTG 57.209 45.000 0.00 0.00 0.00 2.82
3395 3466 1.339610 TCGGTCTTTTGGTTGCATTGG 59.660 47.619 0.00 0.00 0.00 3.16
3396 3467 1.511850 GGTCTTTTGGTTGCATTGGC 58.488 50.000 0.00 0.00 41.68 4.52
3397 3468 1.070601 GGTCTTTTGGTTGCATTGGCT 59.929 47.619 0.00 0.00 41.91 4.75
3398 3469 2.298729 GGTCTTTTGGTTGCATTGGCTA 59.701 45.455 0.00 0.00 41.91 3.93
3399 3470 3.578688 GTCTTTTGGTTGCATTGGCTAG 58.421 45.455 0.00 0.00 41.91 3.42
3400 3471 3.255642 GTCTTTTGGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
3401 3472 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
3402 3473 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
3403 3474 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
3404 3475 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
3405 3476 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
3406 3477 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
3407 3478 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
3408 3479 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
3409 3480 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
3410 3481 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
3411 3482 2.205022 TTGGCTAGAGCATGCACTTT 57.795 45.000 22.83 0.00 44.36 2.66
3412 3483 2.205022 TGGCTAGAGCATGCACTTTT 57.795 45.000 22.83 0.00 44.36 2.27
3413 3484 3.348647 TGGCTAGAGCATGCACTTTTA 57.651 42.857 22.83 4.45 44.36 1.52
3414 3485 3.009723 TGGCTAGAGCATGCACTTTTAC 58.990 45.455 22.83 11.40 44.36 2.01
3415 3486 3.009723 GGCTAGAGCATGCACTTTTACA 58.990 45.455 22.83 3.70 44.36 2.41
3416 3487 3.629398 GGCTAGAGCATGCACTTTTACAT 59.371 43.478 22.83 0.00 44.36 2.29
3417 3488 4.497006 GGCTAGAGCATGCACTTTTACATG 60.497 45.833 22.83 6.41 45.19 3.21
3418 3489 4.497006 GCTAGAGCATGCACTTTTACATGG 60.497 45.833 22.83 0.32 43.13 3.66
3423 3494 5.247507 GCATGCACTTTTACATGGTATCA 57.752 39.130 14.21 0.00 43.13 2.15
3424 3495 5.276270 GCATGCACTTTTACATGGTATCAG 58.724 41.667 14.21 0.00 43.13 2.90
3425 3496 5.066375 GCATGCACTTTTACATGGTATCAGA 59.934 40.000 14.21 0.00 43.13 3.27
3426 3497 6.722301 CATGCACTTTTACATGGTATCAGAG 58.278 40.000 0.00 0.00 39.98 3.35
3427 3498 4.635765 TGCACTTTTACATGGTATCAGAGC 59.364 41.667 0.00 0.00 0.00 4.09
3428 3499 4.035675 GCACTTTTACATGGTATCAGAGCC 59.964 45.833 0.00 0.00 0.00 4.70
3429 3500 5.185454 CACTTTTACATGGTATCAGAGCCA 58.815 41.667 0.00 0.00 39.33 4.75
3430 3501 5.647658 CACTTTTACATGGTATCAGAGCCAA 59.352 40.000 0.00 0.00 38.38 4.52
3431 3502 5.882557 ACTTTTACATGGTATCAGAGCCAAG 59.117 40.000 0.00 0.10 38.38 3.61
3432 3503 5.692115 TTTACATGGTATCAGAGCCAAGA 57.308 39.130 0.00 0.00 38.38 3.02
3433 3504 3.834489 ACATGGTATCAGAGCCAAGAG 57.166 47.619 0.00 1.38 38.38 2.85
3434 3505 2.437281 ACATGGTATCAGAGCCAAGAGG 59.563 50.000 0.00 0.00 38.38 3.69
3435 3506 2.254152 TGGTATCAGAGCCAAGAGGT 57.746 50.000 0.00 0.00 37.19 3.85
3436 3507 1.833630 TGGTATCAGAGCCAAGAGGTG 59.166 52.381 0.00 0.00 37.19 4.00
3437 3508 1.834263 GGTATCAGAGCCAAGAGGTGT 59.166 52.381 0.00 0.00 37.19 4.16
3438 3509 2.237392 GGTATCAGAGCCAAGAGGTGTT 59.763 50.000 0.00 0.00 37.19 3.32
3439 3510 2.486472 ATCAGAGCCAAGAGGTGTTG 57.514 50.000 0.00 0.00 37.19 3.33
3440 3511 1.423584 TCAGAGCCAAGAGGTGTTGA 58.576 50.000 0.00 0.00 37.19 3.18
3441 3512 1.345741 TCAGAGCCAAGAGGTGTTGAG 59.654 52.381 0.00 0.00 37.19 3.02
3442 3513 1.071385 CAGAGCCAAGAGGTGTTGAGT 59.929 52.381 0.00 0.00 37.19 3.41
3443 3514 1.771255 AGAGCCAAGAGGTGTTGAGTT 59.229 47.619 0.00 0.00 37.19 3.01
3444 3515 2.147150 GAGCCAAGAGGTGTTGAGTTC 58.853 52.381 0.00 0.00 37.19 3.01
3445 3516 1.490490 AGCCAAGAGGTGTTGAGTTCA 59.510 47.619 0.00 0.00 37.19 3.18
3446 3517 2.092429 AGCCAAGAGGTGTTGAGTTCAA 60.092 45.455 0.00 0.00 37.19 2.69
3447 3518 2.291741 GCCAAGAGGTGTTGAGTTCAAG 59.708 50.000 0.00 0.00 35.15 3.02
3448 3519 3.808728 CCAAGAGGTGTTGAGTTCAAGA 58.191 45.455 0.00 0.00 36.39 3.02
3449 3520 3.561725 CCAAGAGGTGTTGAGTTCAAGAC 59.438 47.826 12.28 12.28 45.86 3.01
3453 3524 1.226746 GTGTTGAGTTCAAGACCCGG 58.773 55.000 10.16 0.00 42.28 5.73
3454 3525 0.534203 TGTTGAGTTCAAGACCCGGC 60.534 55.000 0.00 0.00 36.39 6.13
3455 3526 0.250338 GTTGAGTTCAAGACCCGGCT 60.250 55.000 0.00 0.00 36.39 5.52
3456 3527 0.250295 TTGAGTTCAAGACCCGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
3457 3528 1.118965 TGAGTTCAAGACCCGGCTGA 61.119 55.000 0.00 0.00 0.00 4.26
3458 3529 0.670854 GAGTTCAAGACCCGGCTGAC 60.671 60.000 0.00 0.00 0.00 3.51
3459 3530 2.027625 GTTCAAGACCCGGCTGACG 61.028 63.158 0.00 0.00 43.80 4.35
3460 3531 3.876589 TTCAAGACCCGGCTGACGC 62.877 63.158 0.00 0.00 42.52 5.19
3461 3532 4.680237 CAAGACCCGGCTGACGCA 62.680 66.667 0.00 0.00 42.52 5.24
3462 3533 3.936203 AAGACCCGGCTGACGCAA 61.936 61.111 0.00 0.00 42.52 4.85
3463 3534 3.254024 AAGACCCGGCTGACGCAAT 62.254 57.895 0.00 0.00 42.52 3.56
3464 3535 2.746277 GACCCGGCTGACGCAATT 60.746 61.111 0.00 0.00 42.52 2.32
3465 3536 2.282180 ACCCGGCTGACGCAATTT 60.282 55.556 0.00 0.00 42.52 1.82
3466 3537 1.003112 ACCCGGCTGACGCAATTTA 60.003 52.632 0.00 0.00 42.52 1.40
3467 3538 0.606944 ACCCGGCTGACGCAATTTAA 60.607 50.000 0.00 0.00 42.52 1.52
3468 3539 0.738389 CCCGGCTGACGCAATTTAAT 59.262 50.000 0.00 0.00 42.52 1.40
3469 3540 1.134175 CCCGGCTGACGCAATTTAATT 59.866 47.619 0.00 0.00 42.52 1.40
3470 3541 2.184448 CCGGCTGACGCAATTTAATTG 58.816 47.619 12.84 12.84 42.52 2.32
3483 3554 5.914746 CAATTTAATTGCAACCCACTTTCG 58.085 37.500 0.00 0.00 32.92 3.46
3484 3555 3.651803 TTAATTGCAACCCACTTTCGG 57.348 42.857 0.00 0.00 0.00 4.30
3485 3556 1.408969 AATTGCAACCCACTTTCGGT 58.591 45.000 0.00 0.00 34.07 4.69
3486 3557 0.958822 ATTGCAACCCACTTTCGGTC 59.041 50.000 0.00 0.00 31.48 4.79
3487 3558 1.104577 TTGCAACCCACTTTCGGTCC 61.105 55.000 0.00 0.00 31.48 4.46
3488 3559 1.527380 GCAACCCACTTTCGGTCCA 60.527 57.895 0.00 0.00 31.48 4.02
3489 3560 1.792118 GCAACCCACTTTCGGTCCAC 61.792 60.000 0.00 0.00 31.48 4.02
3490 3561 1.227734 AACCCACTTTCGGTCCACG 60.228 57.895 0.00 0.00 46.11 4.94
3491 3562 1.974973 AACCCACTTTCGGTCCACGT 61.975 55.000 0.00 0.00 44.69 4.49
3492 3563 1.227734 CCCACTTTCGGTCCACGTT 60.228 57.895 0.00 0.00 44.69 3.99
3493 3564 0.816421 CCCACTTTCGGTCCACGTTT 60.816 55.000 0.00 0.00 44.69 3.60
3494 3565 1.540797 CCCACTTTCGGTCCACGTTTA 60.541 52.381 0.00 0.00 44.69 2.01
3495 3566 1.796459 CCACTTTCGGTCCACGTTTAG 59.204 52.381 0.00 0.00 44.69 1.85
3496 3567 1.796459 CACTTTCGGTCCACGTTTAGG 59.204 52.381 0.00 0.00 44.69 2.69
3497 3568 0.794473 CTTTCGGTCCACGTTTAGGC 59.206 55.000 0.00 0.00 44.69 3.93
3498 3569 0.393820 TTTCGGTCCACGTTTAGGCT 59.606 50.000 0.00 0.00 44.69 4.58
3499 3570 0.393820 TTCGGTCCACGTTTAGGCTT 59.606 50.000 0.00 0.00 44.69 4.35
3500 3571 0.320073 TCGGTCCACGTTTAGGCTTG 60.320 55.000 0.00 0.00 44.69 4.01
3501 3572 0.320073 CGGTCCACGTTTAGGCTTGA 60.320 55.000 0.00 0.00 37.93 3.02
3502 3573 1.439679 GGTCCACGTTTAGGCTTGAG 58.560 55.000 0.00 0.00 0.00 3.02
3503 3574 1.439679 GTCCACGTTTAGGCTTGAGG 58.560 55.000 0.00 0.00 0.00 3.86
3504 3575 0.323629 TCCACGTTTAGGCTTGAGGG 59.676 55.000 0.00 0.00 0.00 4.30
3505 3576 0.323629 CCACGTTTAGGCTTGAGGGA 59.676 55.000 0.00 0.00 0.00 4.20
3506 3577 1.676014 CCACGTTTAGGCTTGAGGGAG 60.676 57.143 0.00 0.00 0.00 4.30
3507 3578 0.036294 ACGTTTAGGCTTGAGGGAGC 60.036 55.000 0.00 0.00 41.96 4.70
3513 3584 2.743928 GCTTGAGGGAGCCACACG 60.744 66.667 0.00 0.00 36.66 4.49
3514 3585 2.743718 CTTGAGGGAGCCACACGT 59.256 61.111 0.00 0.00 0.00 4.49
3515 3586 1.669115 CTTGAGGGAGCCACACGTG 60.669 63.158 15.48 15.48 0.00 4.49
3516 3587 2.099652 CTTGAGGGAGCCACACGTGA 62.100 60.000 25.01 0.00 0.00 4.35
3517 3588 2.099652 TTGAGGGAGCCACACGTGAG 62.100 60.000 25.01 15.20 0.00 3.51
3518 3589 3.302347 GAGGGAGCCACACGTGAGG 62.302 68.421 25.64 25.64 0.00 3.86
3519 3590 4.394712 GGGAGCCACACGTGAGGG 62.395 72.222 29.55 25.23 43.28 4.30
3520 3591 4.394712 GGAGCCACACGTGAGGGG 62.395 72.222 29.55 23.01 40.46 4.79
3521 3592 4.394712 GAGCCACACGTGAGGGGG 62.395 72.222 29.55 20.83 40.46 5.40
3522 3593 4.954118 AGCCACACGTGAGGGGGA 62.954 66.667 29.55 0.00 44.61 4.81
3523 3594 4.394712 GCCACACGTGAGGGGGAG 62.395 72.222 29.55 7.85 44.61 4.30
3524 3595 2.923035 CCACACGTGAGGGGGAGT 60.923 66.667 25.01 0.00 44.61 3.85
3525 3596 2.343758 CACACGTGAGGGGGAGTG 59.656 66.667 25.01 3.00 44.61 3.51
3526 3597 2.122989 ACACGTGAGGGGGAGTGT 60.123 61.111 25.01 0.00 42.26 3.55
3527 3598 1.764854 ACACGTGAGGGGGAGTGTT 60.765 57.895 25.01 0.00 44.32 3.32
3528 3599 1.301716 CACGTGAGGGGGAGTGTTG 60.302 63.158 10.90 0.00 0.00 3.33
3529 3600 1.458777 ACGTGAGGGGGAGTGTTGA 60.459 57.895 0.00 0.00 0.00 3.18
3530 3601 1.004918 CGTGAGGGGGAGTGTTGAC 60.005 63.158 0.00 0.00 0.00 3.18
3531 3602 1.004918 GTGAGGGGGAGTGTTGACG 60.005 63.158 0.00 0.00 0.00 4.35
3532 3603 1.458777 TGAGGGGGAGTGTTGACGT 60.459 57.895 0.00 0.00 0.00 4.34
3533 3604 0.178955 TGAGGGGGAGTGTTGACGTA 60.179 55.000 0.00 0.00 0.00 3.57
3534 3605 1.192428 GAGGGGGAGTGTTGACGTAT 58.808 55.000 0.00 0.00 0.00 3.06
3535 3606 2.291735 TGAGGGGGAGTGTTGACGTATA 60.292 50.000 0.00 0.00 0.00 1.47
3536 3607 2.762327 GAGGGGGAGTGTTGACGTATAA 59.238 50.000 0.00 0.00 0.00 0.98
3537 3608 3.381335 AGGGGGAGTGTTGACGTATAAT 58.619 45.455 0.00 0.00 0.00 1.28
3538 3609 3.134081 AGGGGGAGTGTTGACGTATAATG 59.866 47.826 0.00 0.00 0.00 1.90
3539 3610 3.118519 GGGGGAGTGTTGACGTATAATGT 60.119 47.826 0.00 0.00 0.00 2.71
3540 3611 3.869246 GGGGAGTGTTGACGTATAATGTG 59.131 47.826 0.00 0.00 0.00 3.21
3541 3612 3.308866 GGGAGTGTTGACGTATAATGTGC 59.691 47.826 0.00 0.00 0.00 4.57
3542 3613 4.181578 GGAGTGTTGACGTATAATGTGCT 58.818 43.478 0.00 0.00 0.00 4.40
3543 3614 4.032900 GGAGTGTTGACGTATAATGTGCTG 59.967 45.833 0.00 0.00 0.00 4.41
3544 3615 4.566004 AGTGTTGACGTATAATGTGCTGT 58.434 39.130 0.00 0.00 0.00 4.40
3545 3616 4.625742 AGTGTTGACGTATAATGTGCTGTC 59.374 41.667 0.00 0.00 0.00 3.51
3546 3617 4.625742 GTGTTGACGTATAATGTGCTGTCT 59.374 41.667 0.00 0.00 0.00 3.41
3547 3618 5.803461 GTGTTGACGTATAATGTGCTGTCTA 59.197 40.000 0.00 0.00 0.00 2.59
3548 3619 6.020599 GTGTTGACGTATAATGTGCTGTCTAG 60.021 42.308 0.00 0.00 0.00 2.43
3549 3620 5.830000 TGACGTATAATGTGCTGTCTAGT 57.170 39.130 0.00 0.00 0.00 2.57
3550 3621 5.817988 TGACGTATAATGTGCTGTCTAGTC 58.182 41.667 0.00 0.00 0.00 2.59
3551 3622 5.589050 TGACGTATAATGTGCTGTCTAGTCT 59.411 40.000 0.00 0.00 0.00 3.24
3552 3623 6.062434 ACGTATAATGTGCTGTCTAGTCTC 57.938 41.667 0.00 0.00 0.00 3.36
3553 3624 5.823570 ACGTATAATGTGCTGTCTAGTCTCT 59.176 40.000 0.00 0.00 0.00 3.10
3554 3625 6.319152 ACGTATAATGTGCTGTCTAGTCTCTT 59.681 38.462 0.00 0.00 0.00 2.85
3555 3626 6.853872 CGTATAATGTGCTGTCTAGTCTCTTC 59.146 42.308 0.00 0.00 0.00 2.87
3556 3627 4.464069 AATGTGCTGTCTAGTCTCTTCC 57.536 45.455 0.00 0.00 0.00 3.46
3557 3628 2.876581 TGTGCTGTCTAGTCTCTTCCA 58.123 47.619 0.00 0.00 0.00 3.53
3558 3629 3.435275 TGTGCTGTCTAGTCTCTTCCAT 58.565 45.455 0.00 0.00 0.00 3.41
3559 3630 3.445450 TGTGCTGTCTAGTCTCTTCCATC 59.555 47.826 0.00 0.00 0.00 3.51
3560 3631 3.445450 GTGCTGTCTAGTCTCTTCCATCA 59.555 47.826 0.00 0.00 0.00 3.07
3561 3632 3.698539 TGCTGTCTAGTCTCTTCCATCAG 59.301 47.826 0.00 0.00 0.00 2.90
3562 3633 3.951037 GCTGTCTAGTCTCTTCCATCAGA 59.049 47.826 0.00 0.00 0.00 3.27
3563 3634 4.584325 GCTGTCTAGTCTCTTCCATCAGAT 59.416 45.833 0.00 0.00 0.00 2.90
3564 3635 5.068987 GCTGTCTAGTCTCTTCCATCAGATT 59.931 44.000 0.00 0.00 0.00 2.40
3565 3636 6.462552 TGTCTAGTCTCTTCCATCAGATTG 57.537 41.667 0.00 0.00 0.00 2.67
3566 3637 5.362143 TGTCTAGTCTCTTCCATCAGATTGG 59.638 44.000 0.00 0.00 38.18 3.16
3567 3638 5.362430 GTCTAGTCTCTTCCATCAGATTGGT 59.638 44.000 0.00 0.00 38.01 3.67
3568 3639 4.751767 AGTCTCTTCCATCAGATTGGTC 57.248 45.455 0.00 0.00 38.01 4.02
3569 3640 4.360889 AGTCTCTTCCATCAGATTGGTCT 58.639 43.478 0.00 0.00 38.01 3.85
3570 3641 4.782156 AGTCTCTTCCATCAGATTGGTCTT 59.218 41.667 0.00 0.00 38.01 3.01
3571 3642 5.250313 AGTCTCTTCCATCAGATTGGTCTTT 59.750 40.000 0.00 0.00 38.01 2.52
3572 3643 5.942826 GTCTCTTCCATCAGATTGGTCTTTT 59.057 40.000 0.00 0.00 38.01 2.27
3573 3644 5.942236 TCTCTTCCATCAGATTGGTCTTTTG 59.058 40.000 0.00 0.00 38.01 2.44
3574 3645 5.012239 TCTTCCATCAGATTGGTCTTTTGG 58.988 41.667 0.00 0.00 38.01 3.28
3575 3646 4.387026 TCCATCAGATTGGTCTTTTGGT 57.613 40.909 0.00 0.00 36.21 3.67
3576 3647 4.739793 TCCATCAGATTGGTCTTTTGGTT 58.260 39.130 0.00 0.00 36.21 3.67
3577 3648 4.523943 TCCATCAGATTGGTCTTTTGGTTG 59.476 41.667 0.00 0.00 36.21 3.77
3578 3649 4.240096 CATCAGATTGGTCTTTTGGTTGC 58.760 43.478 0.00 0.00 30.42 4.17
3579 3650 3.295093 TCAGATTGGTCTTTTGGTTGCA 58.705 40.909 0.00 0.00 30.42 4.08
3580 3651 3.896888 TCAGATTGGTCTTTTGGTTGCAT 59.103 39.130 0.00 0.00 30.42 3.96
3581 3652 4.344679 TCAGATTGGTCTTTTGGTTGCATT 59.655 37.500 0.00 0.00 30.42 3.56
3582 3653 4.449743 CAGATTGGTCTTTTGGTTGCATTG 59.550 41.667 0.00 0.00 30.42 2.82
3583 3654 2.906691 TGGTCTTTTGGTTGCATTGG 57.093 45.000 0.00 0.00 0.00 3.16
3584 3655 2.392662 TGGTCTTTTGGTTGCATTGGA 58.607 42.857 0.00 0.00 0.00 3.53
3585 3656 2.971330 TGGTCTTTTGGTTGCATTGGAT 59.029 40.909 0.00 0.00 0.00 3.41
3586 3657 4.155709 TGGTCTTTTGGTTGCATTGGATA 58.844 39.130 0.00 0.00 0.00 2.59
3587 3658 4.220382 TGGTCTTTTGGTTGCATTGGATAG 59.780 41.667 0.00 0.00 0.00 2.08
3588 3659 4.462483 GGTCTTTTGGTTGCATTGGATAGA 59.538 41.667 0.00 0.00 0.00 1.98
3589 3660 5.393461 GGTCTTTTGGTTGCATTGGATAGAG 60.393 44.000 0.00 0.00 0.00 2.43
3590 3661 4.158394 TCTTTTGGTTGCATTGGATAGAGC 59.842 41.667 0.00 0.00 0.00 4.09
3591 3662 2.804986 TGGTTGCATTGGATAGAGCA 57.195 45.000 0.00 0.00 34.79 4.26
3592 3663 3.301794 TGGTTGCATTGGATAGAGCAT 57.698 42.857 0.00 0.00 36.80 3.79
3593 3664 2.953648 TGGTTGCATTGGATAGAGCATG 59.046 45.455 0.00 0.00 36.80 4.06
3594 3665 2.288030 GGTTGCATTGGATAGAGCATGC 60.288 50.000 10.51 10.51 42.07 4.06
3596 3667 1.951602 TGCATTGGATAGAGCATGCAC 59.048 47.619 21.98 14.59 45.50 4.57
3597 3668 2.228059 GCATTGGATAGAGCATGCACT 58.772 47.619 21.45 21.45 41.47 4.40
3598 3669 2.621998 GCATTGGATAGAGCATGCACTT 59.378 45.455 22.83 10.73 41.47 3.16
3599 3670 3.304525 GCATTGGATAGAGCATGCACTTC 60.305 47.826 22.83 17.65 41.47 3.01
3600 3671 3.920231 TTGGATAGAGCATGCACTTCT 57.080 42.857 22.83 17.00 34.26 2.85
3601 3672 5.303165 CATTGGATAGAGCATGCACTTCTA 58.697 41.667 22.83 18.58 34.26 2.10
3602 3673 4.327982 TGGATAGAGCATGCACTTCTAC 57.672 45.455 22.83 11.98 28.63 2.59
3671 3746 0.031857 CTGCAAAAATGACGGCACCA 59.968 50.000 0.00 0.00 32.06 4.17
3720 3795 1.997311 CCTGTGCCATCCTCCTCCA 60.997 63.158 0.00 0.00 0.00 3.86
3807 3882 2.092681 CGTATGCACACTGCTGTTACAG 59.907 50.000 8.18 8.18 45.31 2.74
3850 3925 1.135094 CAGCCCCTATGTGAGACCAT 58.865 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.360393 TGGAGTTGGTCTTGCCCCTT 61.360 55.000 0.00 0.00 36.04 3.95
46 47 2.624364 GTGTCATGCAATGCCATGGATA 59.376 45.455 18.40 3.30 46.21 2.59
186 188 3.242867 TCTCAAGCTTCCTTCTCTTGGA 58.757 45.455 0.00 0.00 38.13 3.53
321 323 2.419011 TTAGTGGCGGCATTGGTGGT 62.419 55.000 17.19 0.00 0.00 4.16
338 341 0.251608 GGGCCACCTCCTTTGCTTTA 60.252 55.000 4.39 0.00 0.00 1.85
629 636 4.622456 CAACGGCCGGCAACACAC 62.622 66.667 31.76 8.61 0.00 3.82
779 793 3.017581 GGGCCTGTCCTGGGATGT 61.018 66.667 0.84 0.00 34.39 3.06
802 816 0.548926 TTAGGCAGTGGATGGGGTCA 60.549 55.000 0.00 0.00 0.00 4.02
813 830 2.354805 GGATTCTGTCCGTTTAGGCAGT 60.355 50.000 0.00 0.00 41.64 4.40
872 889 5.455872 TGTACTACTAGCTCTTAGGCCAAT 58.544 41.667 5.01 0.00 33.42 3.16
899 916 4.278419 AGGCAACAACTTGAGGAATTACAC 59.722 41.667 0.00 0.00 41.41 2.90
980 998 4.023279 CCATGAGAGATCTAAGTGTCTCGG 60.023 50.000 0.00 0.00 44.30 4.63
1114 1144 3.041940 CGCCACGGTTGTCCTGAC 61.042 66.667 0.00 0.00 0.00 3.51
1179 1209 3.067106 CACAAAGCAGTCGTGGAAGTAT 58.933 45.455 0.00 0.00 0.00 2.12
1278 1311 1.640428 CCTAGCGTACACACACATGG 58.360 55.000 0.00 0.00 0.00 3.66
1311 1348 3.044305 GTGTCGTCCAGCAGCACC 61.044 66.667 0.00 0.00 0.00 5.01
1530 1570 3.916061 GTGTTTTCACTCAAGCGCA 57.084 47.368 11.47 0.00 46.30 6.09
1545 1585 4.771356 CGATGGGACGACGCGTGT 62.771 66.667 20.70 15.84 41.37 4.49
1551 1591 3.441011 ATTCCGCCGATGGGACGAC 62.441 63.158 11.07 0.00 35.67 4.34
1556 1600 1.893808 CTTCCATTCCGCCGATGGG 60.894 63.158 5.13 0.00 43.44 4.00
1586 1630 2.921754 GCACGTAGTACTGATTGTCACC 59.078 50.000 5.39 0.00 41.61 4.02
1601 1645 0.948678 GAAGCCCAACAAAGCACGTA 59.051 50.000 0.00 0.00 0.00 3.57
1602 1646 1.733526 GAAGCCCAACAAAGCACGT 59.266 52.632 0.00 0.00 0.00 4.49
1603 1647 1.007387 GGAAGCCCAACAAAGCACG 60.007 57.895 0.00 0.00 0.00 5.34
1604 1648 0.032540 CAGGAAGCCCAACAAAGCAC 59.967 55.000 0.00 0.00 33.88 4.40
1605 1649 1.747325 GCAGGAAGCCCAACAAAGCA 61.747 55.000 0.00 0.00 37.23 3.91
1606 1650 1.005748 GCAGGAAGCCCAACAAAGC 60.006 57.895 0.00 0.00 37.23 3.51
1607 1651 1.286880 CGCAGGAAGCCCAACAAAG 59.713 57.895 0.00 0.00 41.38 2.77
1608 1652 2.855514 GCGCAGGAAGCCCAACAAA 61.856 57.895 0.30 0.00 41.38 2.83
1609 1653 3.294493 GCGCAGGAAGCCCAACAA 61.294 61.111 0.30 0.00 41.38 2.83
1610 1654 4.577677 TGCGCAGGAAGCCCAACA 62.578 61.111 5.66 0.00 41.38 3.33
1611 1655 3.741476 CTGCGCAGGAAGCCCAAC 61.741 66.667 29.88 0.00 41.38 3.77
1614 1658 4.473520 TAGCTGCGCAGGAAGCCC 62.474 66.667 36.47 19.77 40.42 5.19
1615 1659 2.894387 CTAGCTGCGCAGGAAGCC 60.894 66.667 36.47 20.50 40.42 4.35
1616 1660 2.894387 CCTAGCTGCGCAGGAAGC 60.894 66.667 36.47 24.16 39.82 3.86
1617 1661 2.202987 CCCTAGCTGCGCAGGAAG 60.203 66.667 36.47 14.93 31.74 3.46
1618 1662 3.785859 CCCCTAGCTGCGCAGGAA 61.786 66.667 36.47 1.48 31.74 3.36
1730 1774 1.040646 AAGCGGCGAGGAGATCATTA 58.959 50.000 12.98 0.00 0.00 1.90
1810 1854 0.392060 TATCAGCTGTGTGCAGGCAG 60.392 55.000 14.67 11.83 45.94 4.85
2391 2452 2.743126 CTGTACCGGAGATCTATCGACC 59.257 54.545 9.46 3.78 0.00 4.79
2616 2677 1.432657 GAAGTAGTCGGGCGAGGAC 59.567 63.158 0.00 0.00 34.62 3.85
2778 2839 0.743097 GATTGCCCAGCTTCACCATC 59.257 55.000 0.00 0.00 0.00 3.51
2938 2999 4.569162 GCATTTAACTCGGTACATAGTGCA 59.431 41.667 0.00 0.00 0.00 4.57
2939 3000 4.569162 TGCATTTAACTCGGTACATAGTGC 59.431 41.667 0.00 0.00 0.00 4.40
2940 3001 6.844696 ATGCATTTAACTCGGTACATAGTG 57.155 37.500 0.00 0.00 0.00 2.74
2941 3002 6.260050 CCAATGCATTTAACTCGGTACATAGT 59.740 38.462 9.83 0.00 0.00 2.12
2980 3042 7.233348 TGGAAGACTCTTATTTGGCAAAAGAAT 59.767 33.333 17.70 6.03 0.00 2.40
2983 3045 6.331369 TGGAAGACTCTTATTTGGCAAAAG 57.669 37.500 17.70 11.98 0.00 2.27
2984 3046 6.916360 ATGGAAGACTCTTATTTGGCAAAA 57.084 33.333 17.70 0.00 0.00 2.44
3029 3091 6.771188 ATTGAAGCTATACGTAAGCATGAC 57.229 37.500 22.80 14.53 42.62 3.06
3040 3102 7.224949 GTGTCCCTACTGAAATTGAAGCTATAC 59.775 40.741 0.00 0.00 0.00 1.47
3091 3156 1.006805 CAGATGGACCGATCGCTCC 60.007 63.158 20.45 20.45 0.00 4.70
3102 3167 1.160870 ACACCCTCACCCAGATGGA 59.839 57.895 0.00 0.00 35.74 3.41
3112 3177 2.828868 GTGCCAGTCACACCCTCA 59.171 61.111 0.00 0.00 44.98 3.86
3223 3290 7.377398 GTGAATGATCAGTGACTCTGCTATAT 58.623 38.462 5.47 0.00 43.32 0.86
3232 3299 1.737029 CGGCGTGAATGATCAGTGACT 60.737 52.381 10.89 0.00 35.88 3.41
3238 3305 2.106074 GTGGCGGCGTGAATGATCA 61.106 57.895 9.37 0.00 0.00 2.92
3250 3317 3.803082 CAGATTGTGCGGTGGCGG 61.803 66.667 0.00 0.00 44.10 6.13
3251 3318 3.027170 GACAGATTGTGCGGTGGCG 62.027 63.158 0.00 0.00 44.10 5.69
3266 3337 5.615289 TCAGATCATCTCATCGTAGAGACA 58.385 41.667 10.82 3.28 46.58 3.41
3274 3345 4.037803 AGTGGAGTTCAGATCATCTCATCG 59.962 45.833 0.00 0.00 0.00 3.84
3281 3352 4.382901 GCTCTTGAGTGGAGTTCAGATCAT 60.383 45.833 0.00 0.00 33.73 2.45
3328 3399 6.457663 GCACATTATACGTAAACAGATGGCAA 60.458 38.462 0.00 0.00 0.00 4.52
3331 3402 6.649436 CAGCACATTATACGTAAACAGATGG 58.351 40.000 0.00 0.00 0.00 3.51
3332 3403 6.129393 GCAGCACATTATACGTAAACAGATG 58.871 40.000 0.00 2.78 0.00 2.90
3333 3404 5.236478 GGCAGCACATTATACGTAAACAGAT 59.764 40.000 0.00 0.00 0.00 2.90
3334 3405 4.569162 GGCAGCACATTATACGTAAACAGA 59.431 41.667 0.00 0.00 0.00 3.41
3335 3406 4.570772 AGGCAGCACATTATACGTAAACAG 59.429 41.667 0.00 0.00 0.00 3.16
3336 3407 4.509616 AGGCAGCACATTATACGTAAACA 58.490 39.130 0.00 0.00 0.00 2.83
3337 3408 5.751990 ACTAGGCAGCACATTATACGTAAAC 59.248 40.000 0.00 0.00 0.00 2.01
3338 3409 5.909477 ACTAGGCAGCACATTATACGTAAA 58.091 37.500 0.00 0.00 0.00 2.01
3339 3410 5.301045 AGACTAGGCAGCACATTATACGTAA 59.699 40.000 0.00 0.00 0.00 3.18
3340 3411 4.825634 AGACTAGGCAGCACATTATACGTA 59.174 41.667 0.00 0.00 0.00 3.57
3341 3412 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
3342 3413 4.244425 AGACTAGGCAGCACATTATACG 57.756 45.455 0.00 0.00 0.00 3.06
3343 3414 6.927294 AAAAGACTAGGCAGCACATTATAC 57.073 37.500 0.00 0.00 0.00 1.47
3344 3415 7.065803 GTGAAAAAGACTAGGCAGCACATTATA 59.934 37.037 0.00 0.00 0.00 0.98
3345 3416 5.945784 TGAAAAAGACTAGGCAGCACATTAT 59.054 36.000 0.00 0.00 0.00 1.28
3346 3417 5.181245 GTGAAAAAGACTAGGCAGCACATTA 59.819 40.000 0.00 0.00 0.00 1.90
3347 3418 4.022849 GTGAAAAAGACTAGGCAGCACATT 60.023 41.667 0.00 0.00 0.00 2.71
3348 3419 3.503748 GTGAAAAAGACTAGGCAGCACAT 59.496 43.478 0.00 0.00 0.00 3.21
3349 3420 2.878406 GTGAAAAAGACTAGGCAGCACA 59.122 45.455 0.00 0.00 0.00 4.57
3350 3421 2.226674 GGTGAAAAAGACTAGGCAGCAC 59.773 50.000 0.00 0.00 0.00 4.40
3351 3422 2.158682 TGGTGAAAAAGACTAGGCAGCA 60.159 45.455 0.00 0.00 0.00 4.41
3352 3423 2.485814 CTGGTGAAAAAGACTAGGCAGC 59.514 50.000 0.00 0.00 0.00 5.25
3353 3424 4.008074 TCTGGTGAAAAAGACTAGGCAG 57.992 45.455 0.00 0.00 0.00 4.85
3354 3425 4.579869 GATCTGGTGAAAAAGACTAGGCA 58.420 43.478 0.00 0.00 0.00 4.75
3355 3426 3.619038 CGATCTGGTGAAAAAGACTAGGC 59.381 47.826 0.00 0.00 0.00 3.93
3356 3427 4.184629 CCGATCTGGTGAAAAAGACTAGG 58.815 47.826 0.00 0.00 0.00 3.02
3370 3441 1.200020 GCAACCAAAAGACCGATCTGG 59.800 52.381 2.55 2.55 46.41 3.86
3371 3442 1.879380 TGCAACCAAAAGACCGATCTG 59.121 47.619 0.00 0.00 34.48 2.90
3372 3443 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
3373 3444 3.244976 CAATGCAACCAAAAGACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
3374 3445 2.029110 CCAATGCAACCAAAAGACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
3375 3446 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
3376 3447 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
3377 3448 1.070601 AGCCAATGCAACCAAAAGACC 59.929 47.619 0.00 0.00 41.13 3.85
3378 3449 2.531522 AGCCAATGCAACCAAAAGAC 57.468 45.000 0.00 0.00 41.13 3.01
3379 3450 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
3380 3451 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
3381 3452 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
3382 3453 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
3383 3454 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
3384 3455 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
3385 3456 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
3386 3457 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
3387 3458 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
3388 3459 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
3389 3460 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
3390 3461 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
3391 3462 2.431954 AAGTGCATGCTCTAGCCAAT 57.568 45.000 21.70 3.24 41.18 3.16
3392 3463 2.205022 AAAGTGCATGCTCTAGCCAA 57.795 45.000 21.70 0.00 41.18 4.52
3393 3464 2.205022 AAAAGTGCATGCTCTAGCCA 57.795 45.000 21.70 0.00 41.18 4.75
3394 3465 3.009723 TGTAAAAGTGCATGCTCTAGCC 58.990 45.455 21.70 11.06 41.18 3.93
3395 3466 4.497006 CCATGTAAAAGTGCATGCTCTAGC 60.497 45.833 21.70 12.53 44.11 3.42
3396 3467 4.637534 ACCATGTAAAAGTGCATGCTCTAG 59.362 41.667 21.70 6.98 44.11 2.43
3397 3468 4.588899 ACCATGTAAAAGTGCATGCTCTA 58.411 39.130 21.70 7.14 44.11 2.43
3398 3469 3.424703 ACCATGTAAAAGTGCATGCTCT 58.575 40.909 20.33 18.23 44.11 4.09
3399 3470 3.855689 ACCATGTAAAAGTGCATGCTC 57.144 42.857 20.33 15.94 44.11 4.26
3400 3471 4.949238 TGATACCATGTAAAAGTGCATGCT 59.051 37.500 20.33 0.00 44.11 3.79
3401 3472 5.066375 TCTGATACCATGTAAAAGTGCATGC 59.934 40.000 11.82 11.82 44.11 4.06
3402 3473 6.682423 TCTGATACCATGTAAAAGTGCATG 57.318 37.500 0.00 0.00 44.81 4.06
3403 3474 5.297776 GCTCTGATACCATGTAAAAGTGCAT 59.702 40.000 0.00 0.00 0.00 3.96
3404 3475 4.635765 GCTCTGATACCATGTAAAAGTGCA 59.364 41.667 0.00 0.00 0.00 4.57
3405 3476 4.035675 GGCTCTGATACCATGTAAAAGTGC 59.964 45.833 0.00 0.00 0.00 4.40
3406 3477 5.185454 TGGCTCTGATACCATGTAAAAGTG 58.815 41.667 0.00 0.00 0.00 3.16
3407 3478 5.435686 TGGCTCTGATACCATGTAAAAGT 57.564 39.130 0.00 0.00 0.00 2.66
3408 3479 6.115446 TCTTGGCTCTGATACCATGTAAAAG 58.885 40.000 10.55 2.13 35.42 2.27
3409 3480 6.061022 TCTTGGCTCTGATACCATGTAAAA 57.939 37.500 10.55 0.00 35.42 1.52
3410 3481 5.396772 CCTCTTGGCTCTGATACCATGTAAA 60.397 44.000 10.55 0.00 35.42 2.01
3411 3482 4.101585 CCTCTTGGCTCTGATACCATGTAA 59.898 45.833 10.55 0.00 35.42 2.41
3412 3483 3.643320 CCTCTTGGCTCTGATACCATGTA 59.357 47.826 10.55 0.00 35.42 2.29
3413 3484 2.437281 CCTCTTGGCTCTGATACCATGT 59.563 50.000 10.55 0.00 35.42 3.21
3414 3485 2.437281 ACCTCTTGGCTCTGATACCATG 59.563 50.000 0.91 4.05 35.42 3.66
3415 3486 2.437281 CACCTCTTGGCTCTGATACCAT 59.563 50.000 0.91 0.00 35.42 3.55
3416 3487 1.833630 CACCTCTTGGCTCTGATACCA 59.166 52.381 0.00 0.00 36.63 3.25
3417 3488 1.834263 ACACCTCTTGGCTCTGATACC 59.166 52.381 0.00 0.00 36.63 2.73
3418 3489 3.055819 TCAACACCTCTTGGCTCTGATAC 60.056 47.826 0.00 0.00 36.63 2.24
3419 3490 3.173151 TCAACACCTCTTGGCTCTGATA 58.827 45.455 0.00 0.00 36.63 2.15
3420 3491 1.980765 TCAACACCTCTTGGCTCTGAT 59.019 47.619 0.00 0.00 36.63 2.90
3421 3492 1.345741 CTCAACACCTCTTGGCTCTGA 59.654 52.381 0.00 0.00 36.63 3.27
3422 3493 1.071385 ACTCAACACCTCTTGGCTCTG 59.929 52.381 0.00 0.00 36.63 3.35
3423 3494 1.428869 ACTCAACACCTCTTGGCTCT 58.571 50.000 0.00 0.00 36.63 4.09
3424 3495 2.147150 GAACTCAACACCTCTTGGCTC 58.853 52.381 0.00 0.00 36.63 4.70
3425 3496 1.490490 TGAACTCAACACCTCTTGGCT 59.510 47.619 0.00 0.00 36.63 4.75
3426 3497 1.967319 TGAACTCAACACCTCTTGGC 58.033 50.000 0.00 0.00 36.63 4.52
3427 3498 3.561725 GTCTTGAACTCAACACCTCTTGG 59.438 47.826 0.00 0.00 39.83 3.61
3428 3499 3.561725 GGTCTTGAACTCAACACCTCTTG 59.438 47.826 9.03 0.00 40.39 3.02
3429 3500 3.433740 GGGTCTTGAACTCAACACCTCTT 60.434 47.826 14.24 0.00 42.32 2.85
3430 3501 2.104963 GGGTCTTGAACTCAACACCTCT 59.895 50.000 14.24 0.00 42.32 3.69
3431 3502 2.495084 GGGTCTTGAACTCAACACCTC 58.505 52.381 14.24 4.15 42.32 3.85
3432 3503 1.202651 CGGGTCTTGAACTCAACACCT 60.203 52.381 14.24 0.00 42.32 4.00
3433 3504 1.226746 CGGGTCTTGAACTCAACACC 58.773 55.000 8.03 8.03 42.07 4.16
3434 3505 1.226746 CCGGGTCTTGAACTCAACAC 58.773 55.000 0.00 0.00 0.00 3.32
3435 3506 0.534203 GCCGGGTCTTGAACTCAACA 60.534 55.000 2.18 0.00 0.00 3.33
3436 3507 0.250338 AGCCGGGTCTTGAACTCAAC 60.250 55.000 0.00 0.00 0.00 3.18
3437 3508 0.250295 CAGCCGGGTCTTGAACTCAA 60.250 55.000 1.27 0.00 0.00 3.02
3438 3509 1.118965 TCAGCCGGGTCTTGAACTCA 61.119 55.000 1.27 0.00 0.00 3.41
3439 3510 0.670854 GTCAGCCGGGTCTTGAACTC 60.671 60.000 1.27 0.00 0.00 3.01
3440 3511 1.371558 GTCAGCCGGGTCTTGAACT 59.628 57.895 1.27 0.00 0.00 3.01
3441 3512 2.027625 CGTCAGCCGGGTCTTGAAC 61.028 63.158 1.27 0.00 0.00 3.18
3442 3513 2.342279 CGTCAGCCGGGTCTTGAA 59.658 61.111 1.27 0.00 0.00 2.69
3443 3514 4.373116 GCGTCAGCCGGGTCTTGA 62.373 66.667 1.27 0.00 37.42 3.02
3444 3515 4.680237 TGCGTCAGCCGGGTCTTG 62.680 66.667 1.27 0.00 44.33 3.02
3445 3516 2.748058 AATTGCGTCAGCCGGGTCTT 62.748 55.000 1.27 0.00 44.33 3.01
3446 3517 2.748058 AAATTGCGTCAGCCGGGTCT 62.748 55.000 1.27 0.00 44.33 3.85
3447 3518 1.022451 TAAATTGCGTCAGCCGGGTC 61.022 55.000 1.27 0.00 44.33 4.46
3448 3519 0.606944 TTAAATTGCGTCAGCCGGGT 60.607 50.000 0.00 0.00 44.33 5.28
3449 3520 0.738389 ATTAAATTGCGTCAGCCGGG 59.262 50.000 2.18 0.00 44.33 5.73
3450 3521 2.184448 CAATTAAATTGCGTCAGCCGG 58.816 47.619 0.00 0.00 44.33 6.13
3460 3531 5.107143 CCGAAAGTGGGTTGCAATTAAATTG 60.107 40.000 0.59 0.00 43.06 2.32
3461 3532 4.994217 CCGAAAGTGGGTTGCAATTAAATT 59.006 37.500 0.59 0.00 0.00 1.82
3462 3533 4.039852 ACCGAAAGTGGGTTGCAATTAAAT 59.960 37.500 0.59 0.00 32.70 1.40
3463 3534 3.385111 ACCGAAAGTGGGTTGCAATTAAA 59.615 39.130 0.59 0.00 32.70 1.52
3464 3535 2.959707 ACCGAAAGTGGGTTGCAATTAA 59.040 40.909 0.59 0.00 32.70 1.40
3465 3536 2.554893 GACCGAAAGTGGGTTGCAATTA 59.445 45.455 0.59 0.00 38.07 1.40
3466 3537 1.339929 GACCGAAAGTGGGTTGCAATT 59.660 47.619 0.59 0.00 38.07 2.32
3467 3538 0.958822 GACCGAAAGTGGGTTGCAAT 59.041 50.000 0.59 0.00 38.07 3.56
3468 3539 1.104577 GGACCGAAAGTGGGTTGCAA 61.105 55.000 0.00 0.00 38.07 4.08
3469 3540 1.527380 GGACCGAAAGTGGGTTGCA 60.527 57.895 0.00 0.00 38.07 4.08
3470 3541 1.527380 TGGACCGAAAGTGGGTTGC 60.527 57.895 0.00 0.00 38.07 4.17
3471 3542 1.503818 CGTGGACCGAAAGTGGGTTG 61.504 60.000 0.00 0.00 38.07 3.77
3472 3543 1.227734 CGTGGACCGAAAGTGGGTT 60.228 57.895 0.00 0.00 38.07 4.11
3473 3544 1.974973 AACGTGGACCGAAAGTGGGT 61.975 55.000 0.00 0.00 41.48 4.51
3474 3545 0.816421 AAACGTGGACCGAAAGTGGG 60.816 55.000 0.00 0.00 40.70 4.61
3475 3546 1.796459 CTAAACGTGGACCGAAAGTGG 59.204 52.381 0.00 0.00 40.70 4.00
3476 3547 1.796459 CCTAAACGTGGACCGAAAGTG 59.204 52.381 0.00 0.00 40.70 3.16
3477 3548 1.875157 GCCTAAACGTGGACCGAAAGT 60.875 52.381 0.00 0.00 40.70 2.66
3478 3549 0.794473 GCCTAAACGTGGACCGAAAG 59.206 55.000 0.00 0.00 40.70 2.62
3479 3550 0.393820 AGCCTAAACGTGGACCGAAA 59.606 50.000 0.00 0.00 40.70 3.46
3480 3551 0.393820 AAGCCTAAACGTGGACCGAA 59.606 50.000 0.00 0.00 40.70 4.30
3481 3552 0.320073 CAAGCCTAAACGTGGACCGA 60.320 55.000 0.00 0.00 40.70 4.69
3482 3553 0.320073 TCAAGCCTAAACGTGGACCG 60.320 55.000 0.00 0.00 44.03 4.79
3483 3554 1.439679 CTCAAGCCTAAACGTGGACC 58.560 55.000 0.00 0.00 0.00 4.46
3484 3555 1.439679 CCTCAAGCCTAAACGTGGAC 58.560 55.000 0.00 0.00 0.00 4.02
3485 3556 0.323629 CCCTCAAGCCTAAACGTGGA 59.676 55.000 0.00 0.00 0.00 4.02
3486 3557 0.323629 TCCCTCAAGCCTAAACGTGG 59.676 55.000 0.00 0.00 0.00 4.94
3487 3558 1.726853 CTCCCTCAAGCCTAAACGTG 58.273 55.000 0.00 0.00 0.00 4.49
3488 3559 0.036294 GCTCCCTCAAGCCTAAACGT 60.036 55.000 0.00 0.00 36.22 3.99
3489 3560 2.768834 GCTCCCTCAAGCCTAAACG 58.231 57.895 0.00 0.00 36.22 3.60
3496 3567 2.743928 CGTGTGGCTCCCTCAAGC 60.744 66.667 0.00 0.00 41.73 4.01
3497 3568 1.669115 CACGTGTGGCTCCCTCAAG 60.669 63.158 7.58 0.00 33.92 3.02
3498 3569 2.099652 CTCACGTGTGGCTCCCTCAA 62.100 60.000 16.51 0.00 0.00 3.02
3499 3570 2.523168 TCACGTGTGGCTCCCTCA 60.523 61.111 16.51 0.00 0.00 3.86
3500 3571 2.262915 CTCACGTGTGGCTCCCTC 59.737 66.667 16.51 0.00 0.00 4.30
3501 3572 3.314331 CCTCACGTGTGGCTCCCT 61.314 66.667 22.53 0.00 0.00 4.20
3502 3573 4.394712 CCCTCACGTGTGGCTCCC 62.395 72.222 27.37 0.00 0.00 4.30
3503 3574 4.394712 CCCCTCACGTGTGGCTCC 62.395 72.222 27.37 0.00 0.00 4.70
3504 3575 4.394712 CCCCCTCACGTGTGGCTC 62.395 72.222 27.37 0.00 0.00 4.70
3505 3576 4.954118 TCCCCCTCACGTGTGGCT 62.954 66.667 27.37 0.00 0.00 4.75
3506 3577 4.394712 CTCCCCCTCACGTGTGGC 62.395 72.222 27.37 0.00 0.00 5.01
3507 3578 2.923035 ACTCCCCCTCACGTGTGG 60.923 66.667 26.15 26.15 0.00 4.17
3508 3579 2.040009 AACACTCCCCCTCACGTGTG 62.040 60.000 16.51 13.39 40.19 3.82
3509 3580 1.764854 AACACTCCCCCTCACGTGT 60.765 57.895 16.51 0.00 41.92 4.49
3510 3581 1.301716 CAACACTCCCCCTCACGTG 60.302 63.158 9.94 9.94 0.00 4.49
3511 3582 1.458777 TCAACACTCCCCCTCACGT 60.459 57.895 0.00 0.00 0.00 4.49
3512 3583 1.004918 GTCAACACTCCCCCTCACG 60.005 63.158 0.00 0.00 0.00 4.35
3513 3584 1.004918 CGTCAACACTCCCCCTCAC 60.005 63.158 0.00 0.00 0.00 3.51
3514 3585 0.178955 TACGTCAACACTCCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
3515 3586 1.192428 ATACGTCAACACTCCCCCTC 58.808 55.000 0.00 0.00 0.00 4.30
3516 3587 2.537633 TATACGTCAACACTCCCCCT 57.462 50.000 0.00 0.00 0.00 4.79
3517 3588 3.118519 ACATTATACGTCAACACTCCCCC 60.119 47.826 0.00 0.00 0.00 5.40
3518 3589 3.869246 CACATTATACGTCAACACTCCCC 59.131 47.826 0.00 0.00 0.00 4.81
3519 3590 3.308866 GCACATTATACGTCAACACTCCC 59.691 47.826 0.00 0.00 0.00 4.30
3520 3591 4.032900 CAGCACATTATACGTCAACACTCC 59.967 45.833 0.00 0.00 0.00 3.85
3521 3592 4.625742 ACAGCACATTATACGTCAACACTC 59.374 41.667 0.00 0.00 0.00 3.51
3522 3593 4.566004 ACAGCACATTATACGTCAACACT 58.434 39.130 0.00 0.00 0.00 3.55
3523 3594 4.625742 AGACAGCACATTATACGTCAACAC 59.374 41.667 0.00 0.00 0.00 3.32
3524 3595 4.816392 AGACAGCACATTATACGTCAACA 58.184 39.130 0.00 0.00 0.00 3.33
3525 3596 6.034591 ACTAGACAGCACATTATACGTCAAC 58.965 40.000 0.00 0.00 0.00 3.18
3526 3597 6.095021 AGACTAGACAGCACATTATACGTCAA 59.905 38.462 0.00 0.00 0.00 3.18
3527 3598 5.589050 AGACTAGACAGCACATTATACGTCA 59.411 40.000 0.00 0.00 0.00 4.35
3528 3599 6.017770 AGAGACTAGACAGCACATTATACGTC 60.018 42.308 0.00 0.00 0.00 4.34
3529 3600 5.823570 AGAGACTAGACAGCACATTATACGT 59.176 40.000 0.00 0.00 0.00 3.57
3530 3601 6.307031 AGAGACTAGACAGCACATTATACG 57.693 41.667 0.00 0.00 0.00 3.06
3531 3602 7.142680 GGAAGAGACTAGACAGCACATTATAC 58.857 42.308 0.00 0.00 0.00 1.47
3532 3603 6.833933 TGGAAGAGACTAGACAGCACATTATA 59.166 38.462 0.00 0.00 0.00 0.98
3533 3604 5.658634 TGGAAGAGACTAGACAGCACATTAT 59.341 40.000 0.00 0.00 0.00 1.28
3534 3605 5.016831 TGGAAGAGACTAGACAGCACATTA 58.983 41.667 0.00 0.00 0.00 1.90
3535 3606 3.834813 TGGAAGAGACTAGACAGCACATT 59.165 43.478 0.00 0.00 0.00 2.71
3536 3607 3.435275 TGGAAGAGACTAGACAGCACAT 58.565 45.455 0.00 0.00 0.00 3.21
3537 3608 2.876581 TGGAAGAGACTAGACAGCACA 58.123 47.619 0.00 0.00 0.00 4.57
3538 3609 3.445450 TGATGGAAGAGACTAGACAGCAC 59.555 47.826 0.00 0.00 0.00 4.40
3539 3610 3.698539 CTGATGGAAGAGACTAGACAGCA 59.301 47.826 0.00 0.00 0.00 4.41
3540 3611 3.951037 TCTGATGGAAGAGACTAGACAGC 59.049 47.826 0.00 0.00 0.00 4.40
3541 3612 6.461370 CCAATCTGATGGAAGAGACTAGACAG 60.461 46.154 0.00 0.00 43.54 3.51
3542 3613 5.362143 CCAATCTGATGGAAGAGACTAGACA 59.638 44.000 0.00 0.00 43.54 3.41
3543 3614 5.362430 ACCAATCTGATGGAAGAGACTAGAC 59.638 44.000 0.00 0.00 43.54 2.59
3544 3615 5.523588 ACCAATCTGATGGAAGAGACTAGA 58.476 41.667 0.00 0.00 43.54 2.43
3545 3616 5.598005 AGACCAATCTGATGGAAGAGACTAG 59.402 44.000 11.46 0.00 43.54 2.57
3546 3617 5.523588 AGACCAATCTGATGGAAGAGACTA 58.476 41.667 11.46 0.00 43.54 2.59
3547 3618 4.360889 AGACCAATCTGATGGAAGAGACT 58.639 43.478 11.46 0.00 43.54 3.24
3548 3619 4.751767 AGACCAATCTGATGGAAGAGAC 57.248 45.455 11.46 0.00 43.54 3.36
3549 3620 5.768980 AAAGACCAATCTGATGGAAGAGA 57.231 39.130 11.46 0.00 43.54 3.10
3550 3621 5.125097 CCAAAAGACCAATCTGATGGAAGAG 59.875 44.000 11.46 0.00 43.54 2.85
3551 3622 5.012239 CCAAAAGACCAATCTGATGGAAGA 58.988 41.667 11.46 0.00 43.54 2.87
3552 3623 4.768968 ACCAAAAGACCAATCTGATGGAAG 59.231 41.667 12.94 0.00 43.54 3.46
3553 3624 4.739793 ACCAAAAGACCAATCTGATGGAA 58.260 39.130 12.94 0.00 43.54 3.53
3554 3625 4.387026 ACCAAAAGACCAATCTGATGGA 57.613 40.909 12.94 0.00 43.54 3.41
3555 3626 4.813027 CAACCAAAAGACCAATCTGATGG 58.187 43.478 0.00 6.95 46.38 3.51
3556 3627 4.240096 GCAACCAAAAGACCAATCTGATG 58.760 43.478 0.00 0.00 34.48 3.07
3557 3628 3.896888 TGCAACCAAAAGACCAATCTGAT 59.103 39.130 0.00 0.00 34.48 2.90
3558 3629 3.295093 TGCAACCAAAAGACCAATCTGA 58.705 40.909 0.00 0.00 34.48 3.27
3559 3630 3.731652 TGCAACCAAAAGACCAATCTG 57.268 42.857 0.00 0.00 34.48 2.90
3560 3631 4.503643 CCAATGCAACCAAAAGACCAATCT 60.504 41.667 0.00 0.00 36.42 2.40
3561 3632 3.747529 CCAATGCAACCAAAAGACCAATC 59.252 43.478 0.00 0.00 0.00 2.67
3562 3633 3.390639 TCCAATGCAACCAAAAGACCAAT 59.609 39.130 0.00 0.00 0.00 3.16
3563 3634 2.768527 TCCAATGCAACCAAAAGACCAA 59.231 40.909 0.00 0.00 0.00 3.67
3564 3635 2.392662 TCCAATGCAACCAAAAGACCA 58.607 42.857 0.00 0.00 0.00 4.02
3565 3636 3.683365 ATCCAATGCAACCAAAAGACC 57.317 42.857 0.00 0.00 0.00 3.85
3566 3637 5.643379 TCTATCCAATGCAACCAAAAGAC 57.357 39.130 0.00 0.00 0.00 3.01
3567 3638 4.158394 GCTCTATCCAATGCAACCAAAAGA 59.842 41.667 0.00 0.00 0.00 2.52
3568 3639 4.082081 TGCTCTATCCAATGCAACCAAAAG 60.082 41.667 0.00 0.00 32.12 2.27
3569 3640 3.831333 TGCTCTATCCAATGCAACCAAAA 59.169 39.130 0.00 0.00 32.12 2.44
3570 3641 3.429492 TGCTCTATCCAATGCAACCAAA 58.571 40.909 0.00 0.00 32.12 3.28
3571 3642 3.084536 TGCTCTATCCAATGCAACCAA 57.915 42.857 0.00 0.00 32.12 3.67
3572 3643 2.804986 TGCTCTATCCAATGCAACCA 57.195 45.000 0.00 0.00 32.12 3.67
3573 3644 2.288030 GCATGCTCTATCCAATGCAACC 60.288 50.000 11.37 0.00 38.96 3.77
3574 3645 2.359848 TGCATGCTCTATCCAATGCAAC 59.640 45.455 20.33 0.00 41.32 4.17
3575 3646 2.359848 GTGCATGCTCTATCCAATGCAA 59.640 45.455 20.33 0.00 44.98 4.08
3576 3647 1.951602 GTGCATGCTCTATCCAATGCA 59.048 47.619 20.33 5.13 41.91 3.96
3577 3648 2.228059 AGTGCATGCTCTATCCAATGC 58.772 47.619 20.22 0.00 35.77 3.56
3578 3649 4.135306 AGAAGTGCATGCTCTATCCAATG 58.865 43.478 21.70 0.00 0.00 2.82
3579 3650 4.434545 AGAAGTGCATGCTCTATCCAAT 57.565 40.909 21.70 5.92 0.00 3.16
3580 3651 3.920231 AGAAGTGCATGCTCTATCCAA 57.080 42.857 21.70 0.00 0.00 3.53
3581 3652 3.706086 TGTAGAAGTGCATGCTCTATCCA 59.294 43.478 21.70 13.20 0.00 3.41
3582 3653 4.054671 GTGTAGAAGTGCATGCTCTATCC 58.945 47.826 21.70 13.81 0.00 2.59
3583 3654 4.054671 GGTGTAGAAGTGCATGCTCTATC 58.945 47.826 21.70 18.86 0.00 2.08
3584 3655 3.452264 TGGTGTAGAAGTGCATGCTCTAT 59.548 43.478 21.70 15.63 0.00 1.98
3585 3656 2.831526 TGGTGTAGAAGTGCATGCTCTA 59.168 45.455 21.70 15.62 0.00 2.43
3586 3657 1.625315 TGGTGTAGAAGTGCATGCTCT 59.375 47.619 20.33 18.23 0.00 4.09
3587 3658 2.099141 TGGTGTAGAAGTGCATGCTC 57.901 50.000 20.33 15.94 0.00 4.26
3588 3659 2.238144 AGATGGTGTAGAAGTGCATGCT 59.762 45.455 20.33 0.00 0.00 3.79
3589 3660 2.611292 GAGATGGTGTAGAAGTGCATGC 59.389 50.000 11.82 11.82 0.00 4.06
3590 3661 3.869832 CAGAGATGGTGTAGAAGTGCATG 59.130 47.826 0.00 0.00 0.00 4.06
3591 3662 3.517100 ACAGAGATGGTGTAGAAGTGCAT 59.483 43.478 0.00 0.00 0.00 3.96
3592 3663 2.899900 ACAGAGATGGTGTAGAAGTGCA 59.100 45.455 0.00 0.00 0.00 4.57
3593 3664 3.194542 AGACAGAGATGGTGTAGAAGTGC 59.805 47.826 0.00 0.00 0.00 4.40
3594 3665 4.142271 GGAGACAGAGATGGTGTAGAAGTG 60.142 50.000 0.00 0.00 0.00 3.16
3595 3666 4.020543 GGAGACAGAGATGGTGTAGAAGT 58.979 47.826 0.00 0.00 0.00 3.01
3596 3667 4.019858 TGGAGACAGAGATGGTGTAGAAG 58.980 47.826 0.00 0.00 35.01 2.85
3597 3668 4.047627 TGGAGACAGAGATGGTGTAGAA 57.952 45.455 0.00 0.00 35.01 2.10
3598 3669 3.739401 TGGAGACAGAGATGGTGTAGA 57.261 47.619 0.00 0.00 35.01 2.59
3633 3708 0.448990 GCATGTCGCTTCATTCAGCA 59.551 50.000 0.00 0.00 40.09 4.41
3671 3746 1.456296 TGATACTACGCGACCACAGT 58.544 50.000 15.93 10.03 0.00 3.55
3720 3795 4.806625 GCTCAATACTGATGGCTCATGGAT 60.807 45.833 0.00 0.00 0.00 3.41
3807 3882 3.877508 AGGAGAAATAGTAAACCGCATGC 59.122 43.478 7.91 7.91 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.