Multiple sequence alignment - TraesCS4B01G175400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G175400 chr4B 100.000 2762 0 0 1 2762 385547575 385550336 0.000000e+00 5101.0
1 TraesCS4B01G175400 chr4D 92.862 1471 41 17 732 2168 308754161 308755601 0.000000e+00 2076.0
2 TraesCS4B01G175400 chr4D 98.611 216 2 1 533 748 308753933 308754147 5.580000e-102 381.0
3 TraesCS4B01G175400 chr4D 88.136 118 14 0 418 535 79857310 79857427 1.030000e-29 141.0
4 TraesCS4B01G175400 chr4D 85.401 137 18 2 400 534 484581204 484581068 1.030000e-29 141.0
5 TraesCS4B01G175400 chr4D 83.212 137 21 2 400 534 393864416 393864552 1.040000e-24 124.0
6 TraesCS4B01G175400 chr4D 85.593 118 16 1 418 535 79949731 79949847 3.740000e-24 122.0
7 TraesCS4B01G175400 chr1B 98.527 543 8 0 2220 2762 643599390 643598848 0.000000e+00 959.0
8 TraesCS4B01G175400 chr5B 97.606 543 13 0 2220 2762 586344305 586344847 0.000000e+00 931.0
9 TraesCS4B01G175400 chr5B 92.139 547 33 9 2219 2760 596680507 596679966 0.000000e+00 763.0
10 TraesCS4B01G175400 chr5B 83.453 139 17 4 400 534 254262588 254262452 1.040000e-24 124.0
11 TraesCS4B01G175400 chr2B 96.507 544 17 2 2220 2762 793274272 793273730 0.000000e+00 898.0
12 TraesCS4B01G175400 chr6B 95.764 543 23 0 2220 2762 25839834 25839292 0.000000e+00 876.0
13 TraesCS4B01G175400 chr6B 95.628 549 19 3 2215 2762 223418301 223418845 0.000000e+00 876.0
14 TraesCS4B01G175400 chr6B 90.347 404 32 5 1 400 563140253 563139853 8.760000e-145 523.0
15 TraesCS4B01G175400 chr4A 93.841 552 30 4 2213 2762 359628808 359629357 0.000000e+00 828.0
16 TraesCS4B01G175400 chr6A 93.934 544 28 3 2220 2762 33400499 33399960 0.000000e+00 817.0
17 TraesCS4B01G175400 chr6A 90.727 399 37 0 1 399 455944660 455945058 1.460000e-147 532.0
18 TraesCS4B01G175400 chr7A 94.218 467 24 3 2217 2682 115541492 115541028 0.000000e+00 710.0
19 TraesCS4B01G175400 chr7D 92.269 401 31 0 2 402 6326762 6327162 1.110000e-158 569.0
20 TraesCS4B01G175400 chr6D 92.040 402 29 3 1 402 469286473 469286871 1.860000e-156 562.0
21 TraesCS4B01G175400 chr6D 90.796 402 35 2 1 402 3215328 3214929 1.130000e-148 536.0
22 TraesCS4B01G175400 chr6D 87.407 135 15 2 401 534 423550469 423550602 1.320000e-33 154.0
23 TraesCS4B01G175400 chr1D 91.791 402 29 2 1 402 221908496 221908099 8.640000e-155 556.0
24 TraesCS4B01G175400 chr1D 90.323 403 33 3 1 402 342219181 342219578 8.760000e-145 523.0
25 TraesCS4B01G175400 chr1A 90.524 401 36 2 2 401 320228136 320227737 1.880000e-146 529.0
26 TraesCS4B01G175400 chr3D 90.299 402 35 3 1 402 346336504 346336901 8.760000e-145 523.0
27 TraesCS4B01G175400 chr3D 85.185 135 20 0 400 534 414776266 414776400 3.710000e-29 139.0
28 TraesCS4B01G175400 chr5D 84.892 139 16 5 400 535 484225817 484225953 4.800000e-28 135.0
29 TraesCS4B01G175400 chr5D 83.942 137 19 3 400 535 463081868 463081734 8.030000e-26 128.0
30 TraesCS4B01G175400 chr7B 83.544 79 10 1 2684 2762 584805229 584805154 1.370000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G175400 chr4B 385547575 385550336 2761 False 5101.0 5101 100.0000 1 2762 1 chr4B.!!$F1 2761
1 TraesCS4B01G175400 chr4D 308753933 308755601 1668 False 1228.5 2076 95.7365 533 2168 2 chr4D.!!$F4 1635
2 TraesCS4B01G175400 chr1B 643598848 643599390 542 True 959.0 959 98.5270 2220 2762 1 chr1B.!!$R1 542
3 TraesCS4B01G175400 chr5B 586344305 586344847 542 False 931.0 931 97.6060 2220 2762 1 chr5B.!!$F1 542
4 TraesCS4B01G175400 chr5B 596679966 596680507 541 True 763.0 763 92.1390 2219 2760 1 chr5B.!!$R2 541
5 TraesCS4B01G175400 chr2B 793273730 793274272 542 True 898.0 898 96.5070 2220 2762 1 chr2B.!!$R1 542
6 TraesCS4B01G175400 chr6B 25839292 25839834 542 True 876.0 876 95.7640 2220 2762 1 chr6B.!!$R1 542
7 TraesCS4B01G175400 chr6B 223418301 223418845 544 False 876.0 876 95.6280 2215 2762 1 chr6B.!!$F1 547
8 TraesCS4B01G175400 chr4A 359628808 359629357 549 False 828.0 828 93.8410 2213 2762 1 chr4A.!!$F1 549
9 TraesCS4B01G175400 chr6A 33399960 33400499 539 True 817.0 817 93.9340 2220 2762 1 chr6A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 509 0.035056 AAAATCGCCTGAGGGACCTG 60.035 55.0 0.0 0.0 37.85 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 1883 0.736053 TTGCGTTTGTCTTTCGGCTT 59.264 45.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.473520 CGCGATGTCCTGGGCCTT 62.474 66.667 0.00 0.00 0.00 4.35
74 75 2.514824 GCGATGTCCTGGGCCTTC 60.515 66.667 4.53 0.00 0.00 3.46
75 76 3.036429 GCGATGTCCTGGGCCTTCT 62.036 63.158 4.53 0.00 0.00 2.85
76 77 1.604378 CGATGTCCTGGGCCTTCTT 59.396 57.895 4.53 0.00 0.00 2.52
77 78 0.745845 CGATGTCCTGGGCCTTCTTG 60.746 60.000 4.53 0.00 0.00 3.02
78 79 0.394899 GATGTCCTGGGCCTTCTTGG 60.395 60.000 4.53 0.00 39.35 3.61
95 96 4.700365 GCGTTGGCCTTGTTCCGC 62.700 66.667 3.32 4.89 0.00 5.54
96 97 4.038080 CGTTGGCCTTGTTCCGCC 62.038 66.667 3.32 0.00 45.92 6.13
102 103 4.367023 CCTTGTTCCGCCGGTCGA 62.367 66.667 17.96 4.25 41.67 4.20
103 104 2.125673 CTTGTTCCGCCGGTCGAT 60.126 61.111 17.96 0.00 41.67 3.59
104 105 2.433491 TTGTTCCGCCGGTCGATG 60.433 61.111 17.96 4.43 41.67 3.84
105 106 3.943479 TTGTTCCGCCGGTCGATGG 62.943 63.158 17.96 6.22 41.67 3.51
106 107 4.137872 GTTCCGCCGGTCGATGGA 62.138 66.667 17.96 8.36 41.67 3.41
107 108 3.383681 TTCCGCCGGTCGATGGAA 61.384 61.111 17.96 13.29 41.67 3.53
108 109 2.945161 TTCCGCCGGTCGATGGAAA 61.945 57.895 17.96 3.81 41.67 3.13
109 110 3.192922 CCGCCGGTCGATGGAAAC 61.193 66.667 17.96 0.00 41.67 2.78
110 111 3.943479 CCGCCGGTCGATGGAAACA 62.943 63.158 17.96 0.00 41.67 2.83
113 114 2.106683 CCGGTCGATGGAAACAGCC 61.107 63.158 0.00 0.00 46.20 4.85
114 115 1.079127 CGGTCGATGGAAACAGCCT 60.079 57.895 0.00 0.00 46.20 4.58
115 116 1.084370 CGGTCGATGGAAACAGCCTC 61.084 60.000 0.00 0.00 46.20 4.70
116 117 0.744771 GGTCGATGGAAACAGCCTCC 60.745 60.000 0.00 0.00 46.20 4.30
117 118 0.744771 GTCGATGGAAACAGCCTCCC 60.745 60.000 0.00 0.00 46.20 4.30
118 119 1.815421 CGATGGAAACAGCCTCCCG 60.815 63.158 0.00 0.00 46.20 5.14
129 130 4.394712 CCTCCCGGCGCTGAACTT 62.395 66.667 20.25 0.00 0.00 2.66
130 131 2.815647 CTCCCGGCGCTGAACTTC 60.816 66.667 20.25 0.00 0.00 3.01
131 132 4.388499 TCCCGGCGCTGAACTTCC 62.388 66.667 20.25 0.00 0.00 3.46
132 133 4.697756 CCCGGCGCTGAACTTCCA 62.698 66.667 20.25 0.00 0.00 3.53
133 134 3.423154 CCGGCGCTGAACTTCCAC 61.423 66.667 20.25 0.00 0.00 4.02
134 135 3.423154 CGGCGCTGAACTTCCACC 61.423 66.667 11.90 0.00 0.00 4.61
135 136 3.056328 GGCGCTGAACTTCCACCC 61.056 66.667 7.64 0.00 0.00 4.61
136 137 2.032681 GCGCTGAACTTCCACCCT 59.967 61.111 0.00 0.00 0.00 4.34
137 138 1.600916 GCGCTGAACTTCCACCCTT 60.601 57.895 0.00 0.00 0.00 3.95
138 139 1.578206 GCGCTGAACTTCCACCCTTC 61.578 60.000 0.00 0.00 0.00 3.46
139 140 0.250295 CGCTGAACTTCCACCCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
140 141 1.528129 GCTGAACTTCCACCCTTCAG 58.472 55.000 0.00 0.00 42.56 3.02
141 142 1.202818 GCTGAACTTCCACCCTTCAGT 60.203 52.381 8.10 0.00 41.96 3.41
142 143 2.772287 CTGAACTTCCACCCTTCAGTC 58.228 52.381 0.00 0.00 37.29 3.51
143 144 1.070134 TGAACTTCCACCCTTCAGTCG 59.930 52.381 0.00 0.00 0.00 4.18
144 145 0.396811 AACTTCCACCCTTCAGTCGG 59.603 55.000 0.00 0.00 0.00 4.79
145 146 1.376037 CTTCCACCCTTCAGTCGGC 60.376 63.158 0.00 0.00 0.00 5.54
146 147 3.234630 TTCCACCCTTCAGTCGGCG 62.235 63.158 0.00 0.00 0.00 6.46
147 148 4.003788 CCACCCTTCAGTCGGCGT 62.004 66.667 6.85 0.00 0.00 5.68
148 149 2.030562 CACCCTTCAGTCGGCGTT 59.969 61.111 6.85 0.00 0.00 4.84
149 150 2.030562 ACCCTTCAGTCGGCGTTG 59.969 61.111 6.85 7.32 0.00 4.10
150 151 2.742372 CCCTTCAGTCGGCGTTGG 60.742 66.667 6.85 1.40 0.00 3.77
151 152 2.342279 CCTTCAGTCGGCGTTGGA 59.658 61.111 6.85 0.48 0.00 3.53
152 153 2.027625 CCTTCAGTCGGCGTTGGAC 61.028 63.158 6.85 0.00 34.62 4.02
153 154 1.300620 CTTCAGTCGGCGTTGGACA 60.301 57.895 6.85 0.00 36.87 4.02
154 155 0.670546 CTTCAGTCGGCGTTGGACAT 60.671 55.000 6.85 0.00 36.87 3.06
155 156 0.948623 TTCAGTCGGCGTTGGACATG 60.949 55.000 6.85 0.00 36.87 3.21
156 157 2.742372 AGTCGGCGTTGGACATGC 60.742 61.111 6.85 0.00 36.87 4.06
194 195 4.847444 GCCCTCGGCTTCCTCTGC 62.847 72.222 0.00 0.00 46.69 4.26
195 196 3.080121 CCCTCGGCTTCCTCTGCT 61.080 66.667 0.00 0.00 0.00 4.24
196 197 2.664081 CCCTCGGCTTCCTCTGCTT 61.664 63.158 0.00 0.00 0.00 3.91
197 198 1.153469 CCTCGGCTTCCTCTGCTTC 60.153 63.158 0.00 0.00 0.00 3.86
198 199 1.518133 CTCGGCTTCCTCTGCTTCG 60.518 63.158 0.00 0.00 0.00 3.79
199 200 2.510238 CGGCTTCCTCTGCTTCGG 60.510 66.667 0.00 0.00 0.00 4.30
200 201 2.665603 GGCTTCCTCTGCTTCGGT 59.334 61.111 0.00 0.00 0.00 4.69
201 202 1.003233 GGCTTCCTCTGCTTCGGTT 60.003 57.895 0.00 0.00 0.00 4.44
202 203 1.301677 GGCTTCCTCTGCTTCGGTTG 61.302 60.000 0.00 0.00 0.00 3.77
203 204 1.301677 GCTTCCTCTGCTTCGGTTGG 61.302 60.000 0.00 0.00 0.00 3.77
204 205 0.674895 CTTCCTCTGCTTCGGTTGGG 60.675 60.000 0.00 0.00 0.00 4.12
205 206 2.747855 CCTCTGCTTCGGTTGGGC 60.748 66.667 0.00 0.00 0.00 5.36
206 207 3.121030 CTCTGCTTCGGTTGGGCG 61.121 66.667 0.00 0.00 0.00 6.13
207 208 3.589654 CTCTGCTTCGGTTGGGCGA 62.590 63.158 0.00 0.00 0.00 5.54
208 209 3.423154 CTGCTTCGGTTGGGCGAC 61.423 66.667 0.00 0.00 0.00 5.19
254 255 2.090400 GGGGGAACACGTACTTCTTC 57.910 55.000 0.00 0.00 0.00 2.87
255 256 1.670967 GGGGGAACACGTACTTCTTCG 60.671 57.143 0.00 0.00 0.00 3.79
256 257 1.670967 GGGGAACACGTACTTCTTCGG 60.671 57.143 0.00 0.00 0.00 4.30
257 258 1.066136 GGAACACGTACTTCTTCGGC 58.934 55.000 0.00 0.00 0.00 5.54
258 259 0.706729 GAACACGTACTTCTTCGGCG 59.293 55.000 0.00 0.00 0.00 6.46
259 260 0.665369 AACACGTACTTCTTCGGCGG 60.665 55.000 7.21 0.00 0.00 6.13
260 261 2.126189 ACGTACTTCTTCGGCGGC 60.126 61.111 7.21 0.00 0.00 6.53
261 262 2.126228 CGTACTTCTTCGGCGGCA 60.126 61.111 10.53 0.00 0.00 5.69
262 263 1.518572 CGTACTTCTTCGGCGGCAT 60.519 57.895 10.53 0.00 0.00 4.40
263 264 1.752501 CGTACTTCTTCGGCGGCATG 61.753 60.000 10.53 0.00 0.00 4.06
264 265 1.153449 TACTTCTTCGGCGGCATGG 60.153 57.895 10.53 0.00 0.00 3.66
265 266 3.880846 CTTCTTCGGCGGCATGGC 61.881 66.667 9.69 9.69 40.44 4.40
286 287 3.474570 CGGCTGGGAGGGAAGGAG 61.475 72.222 0.00 0.00 0.00 3.69
287 288 3.093172 GGCTGGGAGGGAAGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
288 289 2.041265 GCTGGGAGGGAAGGAGGA 59.959 66.667 0.00 0.00 0.00 3.71
289 290 2.069430 GCTGGGAGGGAAGGAGGAG 61.069 68.421 0.00 0.00 0.00 3.69
290 291 1.383803 CTGGGAGGGAAGGAGGAGG 60.384 68.421 0.00 0.00 0.00 4.30
291 292 1.866997 TGGGAGGGAAGGAGGAGGA 60.867 63.158 0.00 0.00 0.00 3.71
292 293 1.074850 GGGAGGGAAGGAGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
293 294 1.595058 GGGAGGGAAGGAGGAGGAGA 61.595 65.000 0.00 0.00 0.00 3.71
294 295 0.565674 GGAGGGAAGGAGGAGGAGAT 59.434 60.000 0.00 0.00 0.00 2.75
295 296 1.061735 GGAGGGAAGGAGGAGGAGATT 60.062 57.143 0.00 0.00 0.00 2.40
296 297 2.046292 GAGGGAAGGAGGAGGAGATTG 58.954 57.143 0.00 0.00 0.00 2.67
297 298 1.135960 GGGAAGGAGGAGGAGATTGG 58.864 60.000 0.00 0.00 0.00 3.16
298 299 0.472044 GGAAGGAGGAGGAGATTGGC 59.528 60.000 0.00 0.00 0.00 4.52
299 300 0.105778 GAAGGAGGAGGAGATTGGCG 59.894 60.000 0.00 0.00 0.00 5.69
300 301 1.341156 AAGGAGGAGGAGATTGGCGG 61.341 60.000 0.00 0.00 0.00 6.13
301 302 2.812619 GGAGGAGGAGATTGGCGGG 61.813 68.421 0.00 0.00 0.00 6.13
302 303 1.762460 GAGGAGGAGATTGGCGGGA 60.762 63.158 0.00 0.00 0.00 5.14
303 304 1.753368 GAGGAGGAGATTGGCGGGAG 61.753 65.000 0.00 0.00 0.00 4.30
304 305 2.812619 GGAGGAGATTGGCGGGAGG 61.813 68.421 0.00 0.00 0.00 4.30
305 306 1.762460 GAGGAGATTGGCGGGAGGA 60.762 63.158 0.00 0.00 0.00 3.71
306 307 1.306997 AGGAGATTGGCGGGAGGAA 60.307 57.895 0.00 0.00 0.00 3.36
307 308 0.695803 AGGAGATTGGCGGGAGGAAT 60.696 55.000 0.00 0.00 0.00 3.01
308 309 0.536006 GGAGATTGGCGGGAGGAATG 60.536 60.000 0.00 0.00 0.00 2.67
309 310 0.469917 GAGATTGGCGGGAGGAATGA 59.530 55.000 0.00 0.00 0.00 2.57
310 311 0.918983 AGATTGGCGGGAGGAATGAA 59.081 50.000 0.00 0.00 0.00 2.57
311 312 1.133976 AGATTGGCGGGAGGAATGAAG 60.134 52.381 0.00 0.00 0.00 3.02
312 313 0.918983 ATTGGCGGGAGGAATGAAGA 59.081 50.000 0.00 0.00 0.00 2.87
313 314 0.253044 TTGGCGGGAGGAATGAAGAG 59.747 55.000 0.00 0.00 0.00 2.85
314 315 0.617535 TGGCGGGAGGAATGAAGAGA 60.618 55.000 0.00 0.00 0.00 3.10
315 316 0.541863 GGCGGGAGGAATGAAGAGAA 59.458 55.000 0.00 0.00 0.00 2.87
316 317 1.141858 GGCGGGAGGAATGAAGAGAAT 59.858 52.381 0.00 0.00 0.00 2.40
317 318 2.216898 GCGGGAGGAATGAAGAGAATG 58.783 52.381 0.00 0.00 0.00 2.67
318 319 2.158900 GCGGGAGGAATGAAGAGAATGA 60.159 50.000 0.00 0.00 0.00 2.57
319 320 3.726607 CGGGAGGAATGAAGAGAATGAG 58.273 50.000 0.00 0.00 0.00 2.90
320 321 3.386078 CGGGAGGAATGAAGAGAATGAGA 59.614 47.826 0.00 0.00 0.00 3.27
321 322 4.501229 CGGGAGGAATGAAGAGAATGAGAG 60.501 50.000 0.00 0.00 0.00 3.20
322 323 4.202346 GGGAGGAATGAAGAGAATGAGAGG 60.202 50.000 0.00 0.00 0.00 3.69
323 324 4.202346 GGAGGAATGAAGAGAATGAGAGGG 60.202 50.000 0.00 0.00 0.00 4.30
324 325 4.629122 AGGAATGAAGAGAATGAGAGGGA 58.371 43.478 0.00 0.00 0.00 4.20
325 326 5.035556 AGGAATGAAGAGAATGAGAGGGAA 58.964 41.667 0.00 0.00 0.00 3.97
326 327 5.130809 AGGAATGAAGAGAATGAGAGGGAAG 59.869 44.000 0.00 0.00 0.00 3.46
327 328 3.902881 TGAAGAGAATGAGAGGGAAGC 57.097 47.619 0.00 0.00 0.00 3.86
328 329 2.503356 TGAAGAGAATGAGAGGGAAGCC 59.497 50.000 0.00 0.00 0.00 4.35
329 330 1.506025 AGAGAATGAGAGGGAAGCCC 58.494 55.000 0.00 0.00 45.90 5.19
338 339 4.442454 GGGAAGCCCGGGGGAAAG 62.442 72.222 25.28 0.00 37.50 2.62
339 340 3.658422 GGAAGCCCGGGGGAAAGT 61.658 66.667 25.28 0.00 37.50 2.66
340 341 2.361230 GAAGCCCGGGGGAAAGTG 60.361 66.667 25.28 0.00 37.50 3.16
341 342 3.938637 GAAGCCCGGGGGAAAGTGG 62.939 68.421 25.28 0.00 37.50 4.00
344 345 3.261677 CCCGGGGGAAAGTGGGAA 61.262 66.667 14.71 0.00 44.88 3.97
345 346 2.355115 CCGGGGGAAAGTGGGAAG 59.645 66.667 0.00 0.00 0.00 3.46
346 347 2.228480 CCGGGGGAAAGTGGGAAGA 61.228 63.158 0.00 0.00 0.00 2.87
347 348 1.765074 CGGGGGAAAGTGGGAAGAA 59.235 57.895 0.00 0.00 0.00 2.52
348 349 0.111639 CGGGGGAAAGTGGGAAGAAA 59.888 55.000 0.00 0.00 0.00 2.52
349 350 1.629043 GGGGGAAAGTGGGAAGAAAC 58.371 55.000 0.00 0.00 0.00 2.78
350 351 1.244816 GGGGAAAGTGGGAAGAAACG 58.755 55.000 0.00 0.00 0.00 3.60
351 352 1.244816 GGGAAAGTGGGAAGAAACGG 58.755 55.000 0.00 0.00 0.00 4.44
352 353 0.596577 GGAAAGTGGGAAGAAACGGC 59.403 55.000 0.00 0.00 0.00 5.68
353 354 1.314730 GAAAGTGGGAAGAAACGGCA 58.685 50.000 0.00 0.00 0.00 5.69
354 355 1.266989 GAAAGTGGGAAGAAACGGCAG 59.733 52.381 0.00 0.00 0.00 4.85
355 356 0.537371 AAGTGGGAAGAAACGGCAGG 60.537 55.000 0.00 0.00 0.00 4.85
356 357 1.072505 GTGGGAAGAAACGGCAGGA 59.927 57.895 0.00 0.00 0.00 3.86
357 358 0.536460 GTGGGAAGAAACGGCAGGAA 60.536 55.000 0.00 0.00 0.00 3.36
358 359 0.183971 TGGGAAGAAACGGCAGGAAA 59.816 50.000 0.00 0.00 0.00 3.13
359 360 1.324383 GGGAAGAAACGGCAGGAAAA 58.676 50.000 0.00 0.00 0.00 2.29
360 361 1.269723 GGGAAGAAACGGCAGGAAAAG 59.730 52.381 0.00 0.00 0.00 2.27
361 362 1.269723 GGAAGAAACGGCAGGAAAAGG 59.730 52.381 0.00 0.00 0.00 3.11
362 363 0.673985 AAGAAACGGCAGGAAAAGGC 59.326 50.000 0.00 0.00 0.00 4.35
363 364 1.179174 AGAAACGGCAGGAAAAGGCC 61.179 55.000 0.00 0.00 46.80 5.19
367 368 2.363018 GGCAGGAAAAGGCCCTCC 60.363 66.667 0.00 3.08 44.53 4.30
369 370 1.379176 GCAGGAAAAGGCCCTCCTC 60.379 63.158 14.38 7.46 43.40 3.71
370 371 1.857638 GCAGGAAAAGGCCCTCCTCT 61.858 60.000 14.38 0.00 43.40 3.69
371 372 0.254462 CAGGAAAAGGCCCTCCTCTC 59.746 60.000 14.38 0.00 43.40 3.20
372 373 1.222113 GGAAAAGGCCCTCCTCTCG 59.778 63.158 0.00 0.00 43.40 4.04
373 374 1.450491 GAAAAGGCCCTCCTCTCGC 60.450 63.158 0.00 0.00 43.40 5.03
374 375 2.878089 GAAAAGGCCCTCCTCTCGCC 62.878 65.000 0.00 0.00 43.40 5.54
381 382 3.578272 CTCCTCTCGCCGACGGAG 61.578 72.222 20.50 16.01 40.63 4.63
401 402 3.431725 GCCCCACGCCTCTTTTCG 61.432 66.667 0.00 0.00 0.00 3.46
402 403 2.746277 CCCCACGCCTCTTTTCGG 60.746 66.667 0.00 0.00 0.00 4.30
403 404 2.746277 CCCACGCCTCTTTTCGGG 60.746 66.667 0.00 0.00 0.00 5.14
404 405 2.032071 CCACGCCTCTTTTCGGGT 59.968 61.111 0.00 0.00 0.00 5.28
405 406 2.325082 CCACGCCTCTTTTCGGGTG 61.325 63.158 0.00 0.00 41.27 4.61
406 407 2.668550 ACGCCTCTTTTCGGGTGC 60.669 61.111 0.00 0.00 36.66 5.01
407 408 3.788766 CGCCTCTTTTCGGGTGCG 61.789 66.667 0.00 0.00 35.81 5.34
408 409 4.103103 GCCTCTTTTCGGGTGCGC 62.103 66.667 0.00 0.00 0.00 6.09
409 410 3.431725 CCTCTTTTCGGGTGCGCC 61.432 66.667 8.12 8.12 0.00 6.53
410 411 2.668212 CTCTTTTCGGGTGCGCCA 60.668 61.111 19.98 0.00 36.17 5.69
411 412 2.203224 TCTTTTCGGGTGCGCCAA 60.203 55.556 19.98 1.04 36.17 4.52
412 413 2.050442 CTTTTCGGGTGCGCCAAC 60.050 61.111 19.98 0.00 36.17 3.77
413 414 2.517402 TTTTCGGGTGCGCCAACT 60.517 55.556 19.98 0.00 36.17 3.16
414 415 2.731587 CTTTTCGGGTGCGCCAACTG 62.732 60.000 19.98 4.64 36.17 3.16
415 416 4.555709 TTCGGGTGCGCCAACTGT 62.556 61.111 19.98 0.00 36.17 3.55
416 417 4.555709 TCGGGTGCGCCAACTGTT 62.556 61.111 19.98 0.00 36.17 3.16
417 418 2.661840 TTCGGGTGCGCCAACTGTTA 62.662 55.000 19.98 0.00 36.17 2.41
418 419 2.038269 CGGGTGCGCCAACTGTTAT 61.038 57.895 19.98 0.00 36.17 1.89
419 420 1.582610 CGGGTGCGCCAACTGTTATT 61.583 55.000 19.98 0.00 36.17 1.40
420 421 0.601057 GGGTGCGCCAACTGTTATTT 59.399 50.000 19.98 0.00 36.17 1.40
421 422 1.402325 GGGTGCGCCAACTGTTATTTC 60.402 52.381 19.98 0.00 36.17 2.17
422 423 1.602191 GTGCGCCAACTGTTATTTCG 58.398 50.000 4.18 0.00 0.00 3.46
423 424 0.519519 TGCGCCAACTGTTATTTCGG 59.480 50.000 4.18 0.00 0.00 4.30
424 425 0.796870 GCGCCAACTGTTATTTCGGC 60.797 55.000 0.00 8.36 36.16 5.54
425 426 0.179174 CGCCAACTGTTATTTCGGCC 60.179 55.000 11.75 0.00 36.12 6.13
426 427 0.172578 GCCAACTGTTATTTCGGCCC 59.827 55.000 7.41 0.00 33.31 5.80
427 428 1.540267 CCAACTGTTATTTCGGCCCA 58.460 50.000 0.00 0.00 0.00 5.36
428 429 1.889829 CCAACTGTTATTTCGGCCCAA 59.110 47.619 0.00 0.00 0.00 4.12
429 430 2.352323 CCAACTGTTATTTCGGCCCAAC 60.352 50.000 0.00 0.00 0.00 3.77
430 431 1.541379 ACTGTTATTTCGGCCCAACC 58.459 50.000 0.00 0.00 0.00 3.77
431 432 0.815095 CTGTTATTTCGGCCCAACCC 59.185 55.000 0.00 0.00 33.26 4.11
439 440 3.539842 GGCCCAACCCGACAAAAA 58.460 55.556 0.00 0.00 0.00 1.94
457 458 2.100605 AAATGGACTCCTGAAGACGC 57.899 50.000 0.00 0.00 0.00 5.19
458 459 0.108615 AATGGACTCCTGAAGACGCG 60.109 55.000 3.53 3.53 0.00 6.01
459 460 0.965866 ATGGACTCCTGAAGACGCGA 60.966 55.000 15.93 0.00 0.00 5.87
460 461 0.965866 TGGACTCCTGAAGACGCGAT 60.966 55.000 15.93 0.00 0.00 4.58
461 462 0.173708 GGACTCCTGAAGACGCGATT 59.826 55.000 15.93 7.15 0.00 3.34
462 463 1.272781 GACTCCTGAAGACGCGATTG 58.727 55.000 15.93 0.00 0.00 2.67
463 464 0.108615 ACTCCTGAAGACGCGATTGG 60.109 55.000 15.93 6.00 0.00 3.16
464 465 0.807667 CTCCTGAAGACGCGATTGGG 60.808 60.000 15.93 11.38 0.00 4.12
465 466 2.464459 CCTGAAGACGCGATTGGGC 61.464 63.158 15.93 0.00 0.00 5.36
466 467 2.435938 TGAAGACGCGATTGGGCC 60.436 61.111 15.93 0.00 0.00 5.80
467 468 2.125106 GAAGACGCGATTGGGCCT 60.125 61.111 15.93 0.00 0.00 5.19
468 469 1.143183 GAAGACGCGATTGGGCCTA 59.857 57.895 15.93 0.00 0.00 3.93
469 470 0.249911 GAAGACGCGATTGGGCCTAT 60.250 55.000 15.93 1.33 0.00 2.57
470 471 0.180406 AAGACGCGATTGGGCCTATT 59.820 50.000 15.93 0.00 0.00 1.73
471 472 0.180406 AGACGCGATTGGGCCTATTT 59.820 50.000 15.93 0.00 0.00 1.40
472 473 1.021968 GACGCGATTGGGCCTATTTT 58.978 50.000 15.93 0.00 0.00 1.82
473 474 1.002792 GACGCGATTGGGCCTATTTTC 60.003 52.381 15.93 0.00 0.00 2.29
474 475 0.041312 CGCGATTGGGCCTATTTTCG 60.041 55.000 0.00 7.48 0.00 3.46
475 476 0.317854 GCGATTGGGCCTATTTTCGC 60.318 55.000 20.17 20.17 43.98 4.70
476 477 0.310854 CGATTGGGCCTATTTTCGCC 59.689 55.000 4.53 0.00 44.92 5.54
480 481 3.592814 GGCCTATTTTCGCCCGCC 61.593 66.667 0.00 0.00 39.39 6.13
481 482 3.949047 GCCTATTTTCGCCCGCCG 61.949 66.667 0.00 0.00 38.61 6.46
482 483 3.276846 CCTATTTTCGCCCGCCGG 61.277 66.667 0.00 0.00 37.59 6.13
506 507 3.266240 AAAAATCGCCTGAGGGACC 57.734 52.632 0.00 0.00 37.85 4.46
507 508 0.698818 AAAAATCGCCTGAGGGACCT 59.301 50.000 0.00 0.00 37.85 3.85
508 509 0.035056 AAAATCGCCTGAGGGACCTG 60.035 55.000 0.00 0.00 37.85 4.00
509 510 1.201429 AAATCGCCTGAGGGACCTGT 61.201 55.000 0.00 0.00 37.85 4.00
510 511 1.201429 AATCGCCTGAGGGACCTGTT 61.201 55.000 0.00 0.00 37.85 3.16
511 512 1.903877 ATCGCCTGAGGGACCTGTTG 61.904 60.000 0.00 0.00 37.85 3.33
512 513 2.352805 GCCTGAGGGACCTGTTGG 59.647 66.667 0.00 0.00 39.83 3.77
513 514 3.081554 CCTGAGGGACCTGTTGGG 58.918 66.667 0.00 0.00 41.89 4.12
514 515 2.606587 CCTGAGGGACCTGTTGGGG 61.607 68.421 0.00 0.00 40.03 4.96
515 516 1.538876 CTGAGGGACCTGTTGGGGA 60.539 63.158 0.00 0.00 40.03 4.81
516 517 0.916358 CTGAGGGACCTGTTGGGGAT 60.916 60.000 0.00 0.00 40.03 3.85
517 518 1.207488 TGAGGGACCTGTTGGGGATG 61.207 60.000 0.00 0.00 40.03 3.51
518 519 2.043953 GGGACCTGTTGGGGATGC 60.044 66.667 0.00 0.00 40.03 3.91
519 520 2.438434 GGACCTGTTGGGGATGCG 60.438 66.667 0.00 0.00 40.03 4.73
520 521 2.438434 GACCTGTTGGGGATGCGG 60.438 66.667 0.00 0.00 40.03 5.69
521 522 4.740822 ACCTGTTGGGGATGCGGC 62.741 66.667 0.00 0.00 40.03 6.53
522 523 4.431131 CCTGTTGGGGATGCGGCT 62.431 66.667 0.00 0.00 0.00 5.52
523 524 3.136123 CTGTTGGGGATGCGGCTG 61.136 66.667 0.00 0.00 0.00 4.85
524 525 3.626996 CTGTTGGGGATGCGGCTGA 62.627 63.158 0.00 0.00 0.00 4.26
525 526 2.361104 GTTGGGGATGCGGCTGAA 60.361 61.111 0.00 0.00 0.00 3.02
526 527 2.045045 TTGGGGATGCGGCTGAAG 60.045 61.111 0.00 0.00 0.00 3.02
527 528 2.601702 TTGGGGATGCGGCTGAAGA 61.602 57.895 0.00 0.00 0.00 2.87
528 529 1.925285 TTGGGGATGCGGCTGAAGAT 61.925 55.000 0.00 0.00 0.00 2.40
529 530 1.895707 GGGGATGCGGCTGAAGATG 60.896 63.158 0.00 0.00 0.00 2.90
530 531 2.550101 GGGATGCGGCTGAAGATGC 61.550 63.158 0.00 0.00 0.00 3.91
531 532 1.525535 GGATGCGGCTGAAGATGCT 60.526 57.895 0.00 0.00 0.00 3.79
535 536 1.022982 TGCGGCTGAAGATGCTCTTG 61.023 55.000 0.00 0.00 36.73 3.02
653 654 3.515071 AAATCCAGAAAAACGACGTCG 57.485 42.857 34.58 34.58 46.33 5.12
777 808 1.257936 CAGTCGACAACAACTTGACGG 59.742 52.381 19.50 0.00 43.13 4.79
786 817 5.754778 ACAACAACTTGACGGTAATTAAGC 58.245 37.500 0.00 0.00 0.00 3.09
862 893 2.029838 ATTGAGTAGCGGGCAAGAAG 57.970 50.000 0.00 0.00 0.00 2.85
868 899 0.465705 TAGCGGGCAAGAAGAGATGG 59.534 55.000 0.00 0.00 0.00 3.51
877 908 1.884926 GAAGAGATGGCGCTTCCCG 60.885 63.158 7.64 0.00 42.80 5.14
929 960 2.357034 CCCGTGTGACTTGGTCCG 60.357 66.667 0.00 0.00 0.00 4.79
937 968 0.391597 TGACTTGGTCCGTGTCTTCC 59.608 55.000 13.13 0.00 0.00 3.46
1008 1058 4.098501 GCAAAATATAGAACCAGCAAGCCT 59.901 41.667 0.00 0.00 0.00 4.58
1009 1059 5.394553 GCAAAATATAGAACCAGCAAGCCTT 60.395 40.000 0.00 0.00 0.00 4.35
1010 1060 6.183360 GCAAAATATAGAACCAGCAAGCCTTA 60.183 38.462 0.00 0.00 0.00 2.69
1011 1061 7.420800 CAAAATATAGAACCAGCAAGCCTTAG 58.579 38.462 0.00 0.00 0.00 2.18
1012 1062 2.403252 TAGAACCAGCAAGCCTTAGC 57.597 50.000 0.00 0.00 40.32 3.09
1050 1100 2.352127 GCCTCCATTGAAGTGCAAGAAC 60.352 50.000 0.00 0.00 40.42 3.01
1055 1105 4.344679 TCCATTGAAGTGCAAGAACCAAAT 59.655 37.500 0.00 0.00 40.42 2.32
1089 1139 2.224079 CGTCCATCAAACACCTCAGTTG 59.776 50.000 0.00 0.00 0.00 3.16
1095 1145 1.880027 CAAACACCTCAGTTGGCTACC 59.120 52.381 0.00 0.00 0.00 3.18
1096 1146 1.136828 AACACCTCAGTTGGCTACCA 58.863 50.000 0.00 0.00 0.00 3.25
1097 1147 1.362224 ACACCTCAGTTGGCTACCAT 58.638 50.000 0.00 0.00 31.53 3.55
1098 1148 1.279271 ACACCTCAGTTGGCTACCATC 59.721 52.381 0.00 0.00 31.53 3.51
1099 1149 0.912486 ACCTCAGTTGGCTACCATCC 59.088 55.000 0.00 0.00 31.53 3.51
1100 1150 0.179073 CCTCAGTTGGCTACCATCCG 60.179 60.000 0.00 0.00 31.53 4.18
1146 1196 2.276740 GCCCATGGGGTTCTCTGG 59.723 66.667 32.23 3.55 46.51 3.86
1578 1636 1.523095 GCAGCCGACATCGTTCTAATC 59.477 52.381 0.00 0.00 37.74 1.75
1626 1684 6.264744 TGCTCTGTGTTTTCTACTGTAGTACT 59.735 38.462 14.11 0.00 0.00 2.73
1669 1727 3.009473 CCTTGTTCTCTCCTTCCATTCCA 59.991 47.826 0.00 0.00 0.00 3.53
1688 1746 1.011333 ATTTTACGCGGTGGGATTCG 58.989 50.000 12.47 0.00 0.00 3.34
1819 1883 8.350722 GTCGTCATGACCTTCTATGTATAGAAA 58.649 37.037 20.03 2.21 42.10 2.52
1820 1884 8.909923 TCGTCATGACCTTCTATGTATAGAAAA 58.090 33.333 20.03 3.40 45.69 2.29
1821 1885 9.186323 CGTCATGACCTTCTATGTATAGAAAAG 57.814 37.037 20.03 10.87 45.69 2.27
1822 1886 8.983724 GTCATGACCTTCTATGTATAGAAAAGC 58.016 37.037 15.31 7.60 45.69 3.51
1823 1887 8.150945 TCATGACCTTCTATGTATAGAAAAGCC 58.849 37.037 13.59 4.19 45.69 4.35
1824 1888 6.513180 TGACCTTCTATGTATAGAAAAGCCG 58.487 40.000 13.59 4.19 45.69 5.52
1853 1917 0.040514 CGCAAATGTCTTGTTCCGCA 60.041 50.000 0.00 0.00 0.00 5.69
1862 1926 4.193090 TGTCTTGTTCCGCACTAAGAAAA 58.807 39.130 0.00 0.00 31.64 2.29
1863 1927 4.636648 TGTCTTGTTCCGCACTAAGAAAAA 59.363 37.500 0.00 0.00 31.64 1.94
1945 2009 5.749109 TGGGTAAACAAAAGCAAATGTTACG 59.251 36.000 2.11 0.00 38.75 3.18
1987 2051 6.705825 GCAAATGTGGGACAACTAAAATTTCT 59.294 34.615 0.00 0.00 44.16 2.52
1992 2056 4.022676 TGGGACAACTAAAATTTCTTCCGC 60.023 41.667 0.00 0.00 31.92 5.54
2106 2170 4.637968 CATCGACCAAGAAACGTTATGTG 58.362 43.478 0.00 0.00 0.00 3.21
2148 2212 4.267928 GGAAGATTGGTCTATCAAACGTCG 59.732 45.833 0.00 0.00 32.17 5.12
2168 2232 4.860907 GTCGCGTCTAGGAATAACTTTTCA 59.139 41.667 5.77 0.00 0.00 2.69
2169 2233 5.004535 GTCGCGTCTAGGAATAACTTTTCAG 59.995 44.000 5.77 0.00 0.00 3.02
2170 2234 4.863131 CGCGTCTAGGAATAACTTTTCAGT 59.137 41.667 0.00 0.00 33.11 3.41
2171 2235 5.004535 CGCGTCTAGGAATAACTTTTCAGTC 59.995 44.000 0.00 0.00 30.45 3.51
2172 2236 5.867716 GCGTCTAGGAATAACTTTTCAGTCA 59.132 40.000 0.00 0.00 30.45 3.41
2173 2237 6.367969 GCGTCTAGGAATAACTTTTCAGTCAA 59.632 38.462 0.00 0.00 30.45 3.18
2174 2238 7.064728 GCGTCTAGGAATAACTTTTCAGTCAAT 59.935 37.037 0.00 0.00 30.45 2.57
2175 2239 9.582431 CGTCTAGGAATAACTTTTCAGTCAATA 57.418 33.333 0.00 0.00 30.45 1.90
2180 2244 9.905713 AGGAATAACTTTTCAGTCAATATAGCA 57.094 29.630 0.00 0.00 30.45 3.49
2186 2250 8.737168 ACTTTTCAGTCAATATAGCAATAGCA 57.263 30.769 0.00 0.00 45.49 3.49
2187 2251 8.834465 ACTTTTCAGTCAATATAGCAATAGCAG 58.166 33.333 0.00 0.00 45.49 4.24
2188 2252 7.734924 TTTCAGTCAATATAGCAATAGCAGG 57.265 36.000 0.00 0.00 45.49 4.85
2189 2253 6.670695 TCAGTCAATATAGCAATAGCAGGA 57.329 37.500 0.00 0.00 45.49 3.86
2190 2254 7.250032 TCAGTCAATATAGCAATAGCAGGAT 57.750 36.000 0.00 0.00 45.49 3.24
2191 2255 8.366359 TCAGTCAATATAGCAATAGCAGGATA 57.634 34.615 0.00 0.00 45.49 2.59
2192 2256 8.815912 TCAGTCAATATAGCAATAGCAGGATAA 58.184 33.333 0.00 0.00 45.49 1.75
2193 2257 9.096160 CAGTCAATATAGCAATAGCAGGATAAG 57.904 37.037 0.00 0.00 45.49 1.73
2194 2258 8.820831 AGTCAATATAGCAATAGCAGGATAAGT 58.179 33.333 0.00 0.00 45.49 2.24
2195 2259 9.442047 GTCAATATAGCAATAGCAGGATAAGTT 57.558 33.333 0.00 0.00 45.49 2.66
2199 2263 9.877178 ATATAGCAATAGCAGGATAAGTTACAC 57.123 33.333 0.00 0.00 45.49 2.90
2200 2264 6.240549 AGCAATAGCAGGATAAGTTACACT 57.759 37.500 0.00 0.00 45.49 3.55
2201 2265 6.653989 AGCAATAGCAGGATAAGTTACACTT 58.346 36.000 0.00 0.00 45.49 3.16
2202 2266 7.112779 AGCAATAGCAGGATAAGTTACACTTT 58.887 34.615 0.00 0.00 45.49 2.66
2203 2267 7.066284 AGCAATAGCAGGATAAGTTACACTTTG 59.934 37.037 0.00 0.00 45.49 2.77
2204 2268 7.679638 GCAATAGCAGGATAAGTTACACTTTGG 60.680 40.741 0.00 0.00 39.00 3.28
2205 2269 4.589908 AGCAGGATAAGTTACACTTTGGG 58.410 43.478 0.00 0.00 39.51 4.12
2206 2270 3.128764 GCAGGATAAGTTACACTTTGGGC 59.871 47.826 0.00 0.00 39.51 5.36
2207 2271 4.589908 CAGGATAAGTTACACTTTGGGCT 58.410 43.478 0.00 0.00 39.51 5.19
2208 2272 4.636206 CAGGATAAGTTACACTTTGGGCTC 59.364 45.833 0.00 0.00 39.51 4.70
2209 2273 4.288626 AGGATAAGTTACACTTTGGGCTCA 59.711 41.667 0.00 0.00 39.51 4.26
2210 2274 5.007682 GGATAAGTTACACTTTGGGCTCAA 58.992 41.667 0.00 0.00 39.51 3.02
2211 2275 5.106277 GGATAAGTTACACTTTGGGCTCAAC 60.106 44.000 0.00 0.00 39.51 3.18
2212 2276 3.290948 AGTTACACTTTGGGCTCAACA 57.709 42.857 0.00 0.00 31.78 3.33
2213 2277 3.832527 AGTTACACTTTGGGCTCAACAT 58.167 40.909 0.00 0.00 31.78 2.71
2214 2278 3.821033 AGTTACACTTTGGGCTCAACATC 59.179 43.478 0.00 0.00 31.78 3.06
2215 2279 2.664402 ACACTTTGGGCTCAACATCT 57.336 45.000 0.00 0.00 31.78 2.90
2216 2280 3.788227 ACACTTTGGGCTCAACATCTA 57.212 42.857 0.00 0.00 31.78 1.98
2465 2534 3.701040 AGCAAAAAGGCAACAGAGAAAGA 59.299 39.130 0.00 0.00 41.41 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.473520 AAGGCCCAGGACATCGCG 62.474 66.667 0.00 0.00 0.00 5.87
57 58 2.514824 GAAGGCCCAGGACATCGC 60.515 66.667 0.00 0.00 0.00 4.58
58 59 0.745845 CAAGAAGGCCCAGGACATCG 60.746 60.000 0.00 0.00 0.00 3.84
59 60 0.394899 CCAAGAAGGCCCAGGACATC 60.395 60.000 0.00 0.00 0.00 3.06
60 61 1.693640 CCAAGAAGGCCCAGGACAT 59.306 57.895 0.00 0.00 0.00 3.06
61 62 3.170362 CCAAGAAGGCCCAGGACA 58.830 61.111 0.00 0.00 0.00 4.02
78 79 4.700365 GCGGAACAAGGCCAACGC 62.700 66.667 5.01 7.78 40.19 4.84
85 86 3.659089 ATCGACCGGCGGAACAAGG 62.659 63.158 35.78 14.03 41.33 3.61
86 87 2.125673 ATCGACCGGCGGAACAAG 60.126 61.111 35.78 17.65 41.33 3.16
87 88 2.433491 CATCGACCGGCGGAACAA 60.433 61.111 35.78 15.13 41.33 2.83
88 89 4.444838 CCATCGACCGGCGGAACA 62.445 66.667 35.78 15.61 41.33 3.18
89 90 3.652539 TTCCATCGACCGGCGGAAC 62.653 63.158 35.78 23.59 41.33 3.62
90 91 2.945161 TTTCCATCGACCGGCGGAA 61.945 57.895 35.78 17.89 41.33 4.30
91 92 3.383681 TTTCCATCGACCGGCGGA 61.384 61.111 35.78 11.41 41.33 5.54
92 93 3.192922 GTTTCCATCGACCGGCGG 61.193 66.667 27.06 27.06 41.33 6.13
93 94 2.433491 TGTTTCCATCGACCGGCG 60.433 61.111 0.00 6.66 42.69 6.46
94 95 2.750888 GCTGTTTCCATCGACCGGC 61.751 63.158 0.00 0.00 0.00 6.13
95 96 2.106683 GGCTGTTTCCATCGACCGG 61.107 63.158 0.00 0.00 0.00 5.28
96 97 1.079127 AGGCTGTTTCCATCGACCG 60.079 57.895 0.00 0.00 0.00 4.79
97 98 0.744771 GGAGGCTGTTTCCATCGACC 60.745 60.000 0.00 0.00 34.74 4.79
98 99 0.744771 GGGAGGCTGTTTCCATCGAC 60.745 60.000 0.00 0.00 36.40 4.20
99 100 1.602237 GGGAGGCTGTTTCCATCGA 59.398 57.895 0.00 0.00 36.40 3.59
100 101 1.815421 CGGGAGGCTGTTTCCATCG 60.815 63.158 0.00 0.00 36.40 3.84
101 102 4.225497 CGGGAGGCTGTTTCCATC 57.775 61.111 0.00 0.00 36.40 3.51
113 114 2.815647 GAAGTTCAGCGCCGGGAG 60.816 66.667 2.29 0.00 0.00 4.30
114 115 4.388499 GGAAGTTCAGCGCCGGGA 62.388 66.667 2.29 0.00 0.00 5.14
115 116 4.697756 TGGAAGTTCAGCGCCGGG 62.698 66.667 2.29 0.00 0.00 5.73
116 117 3.423154 GTGGAAGTTCAGCGCCGG 61.423 66.667 2.29 0.00 0.00 6.13
117 118 3.423154 GGTGGAAGTTCAGCGCCG 61.423 66.667 2.29 0.00 0.00 6.46
118 119 3.056328 GGGTGGAAGTTCAGCGCC 61.056 66.667 2.29 4.29 36.14 6.53
119 120 1.578206 GAAGGGTGGAAGTTCAGCGC 61.578 60.000 0.00 0.00 36.14 5.92
120 121 0.250295 TGAAGGGTGGAAGTTCAGCG 60.250 55.000 5.01 0.00 36.14 5.18
121 122 1.528129 CTGAAGGGTGGAAGTTCAGC 58.472 55.000 5.01 1.00 40.45 4.26
123 124 1.070134 CGACTGAAGGGTGGAAGTTCA 59.930 52.381 5.01 0.00 0.00 3.18
124 125 1.608283 CCGACTGAAGGGTGGAAGTTC 60.608 57.143 0.00 0.00 0.00 3.01
125 126 0.396811 CCGACTGAAGGGTGGAAGTT 59.603 55.000 0.00 0.00 0.00 2.66
126 127 2.058675 CCGACTGAAGGGTGGAAGT 58.941 57.895 0.00 0.00 0.00 3.01
127 128 1.376037 GCCGACTGAAGGGTGGAAG 60.376 63.158 0.00 0.00 0.00 3.46
128 129 2.747686 GCCGACTGAAGGGTGGAA 59.252 61.111 0.00 0.00 0.00 3.53
129 130 3.691342 CGCCGACTGAAGGGTGGA 61.691 66.667 0.00 0.00 0.00 4.02
130 131 3.530910 AACGCCGACTGAAGGGTGG 62.531 63.158 0.00 0.00 38.13 4.61
131 132 2.030562 AACGCCGACTGAAGGGTG 59.969 61.111 0.00 0.00 39.70 4.61
132 133 2.030562 CAACGCCGACTGAAGGGT 59.969 61.111 0.00 0.00 0.00 4.34
133 134 2.742372 CCAACGCCGACTGAAGGG 60.742 66.667 0.00 0.00 0.00 3.95
134 135 2.027625 GTCCAACGCCGACTGAAGG 61.028 63.158 0.00 0.00 0.00 3.46
135 136 0.670546 ATGTCCAACGCCGACTGAAG 60.671 55.000 0.00 0.00 0.00 3.02
136 137 0.948623 CATGTCCAACGCCGACTGAA 60.949 55.000 0.00 0.00 0.00 3.02
137 138 1.374125 CATGTCCAACGCCGACTGA 60.374 57.895 0.00 0.00 0.00 3.41
138 139 3.027170 GCATGTCCAACGCCGACTG 62.027 63.158 0.00 0.00 0.00 3.51
139 140 2.742372 GCATGTCCAACGCCGACT 60.742 61.111 0.00 0.00 0.00 4.18
140 141 3.799755 GGCATGTCCAACGCCGAC 61.800 66.667 0.00 0.00 35.79 4.79
178 179 2.585791 GAAGCAGAGGAAGCCGAGGG 62.586 65.000 0.00 0.00 0.00 4.30
179 180 1.153469 GAAGCAGAGGAAGCCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
180 181 1.518133 CGAAGCAGAGGAAGCCGAG 60.518 63.158 0.00 0.00 0.00 4.63
181 182 2.573869 CGAAGCAGAGGAAGCCGA 59.426 61.111 0.00 0.00 0.00 5.54
182 183 2.510238 CCGAAGCAGAGGAAGCCG 60.510 66.667 0.00 0.00 0.00 5.52
183 184 1.003233 AACCGAAGCAGAGGAAGCC 60.003 57.895 0.00 0.00 0.00 4.35
184 185 1.301677 CCAACCGAAGCAGAGGAAGC 61.302 60.000 0.00 0.00 0.00 3.86
185 186 0.674895 CCCAACCGAAGCAGAGGAAG 60.675 60.000 0.00 0.00 0.00 3.46
186 187 1.374947 CCCAACCGAAGCAGAGGAA 59.625 57.895 0.00 0.00 0.00 3.36
187 188 3.068881 CCCAACCGAAGCAGAGGA 58.931 61.111 0.00 0.00 0.00 3.71
188 189 2.747855 GCCCAACCGAAGCAGAGG 60.748 66.667 0.00 0.00 0.00 3.69
189 190 3.121030 CGCCCAACCGAAGCAGAG 61.121 66.667 0.00 0.00 0.00 3.35
190 191 3.621805 TCGCCCAACCGAAGCAGA 61.622 61.111 0.00 0.00 33.77 4.26
191 192 3.423154 GTCGCCCAACCGAAGCAG 61.423 66.667 0.00 0.00 39.17 4.24
232 233 3.578515 AAGTACGTGTTCCCCCGCG 62.579 63.158 0.00 0.00 43.62 6.46
233 234 1.739196 GAAGTACGTGTTCCCCCGC 60.739 63.158 0.00 0.00 0.00 6.13
234 235 0.319405 AAGAAGTACGTGTTCCCCCG 59.681 55.000 0.00 0.00 0.00 5.73
235 236 1.670967 CGAAGAAGTACGTGTTCCCCC 60.671 57.143 11.98 0.00 0.00 5.40
236 237 1.670967 CCGAAGAAGTACGTGTTCCCC 60.671 57.143 11.98 0.00 0.00 4.81
237 238 1.706443 CCGAAGAAGTACGTGTTCCC 58.294 55.000 11.98 0.00 0.00 3.97
238 239 1.066136 GCCGAAGAAGTACGTGTTCC 58.934 55.000 11.98 0.00 0.00 3.62
239 240 0.706729 CGCCGAAGAAGTACGTGTTC 59.293 55.000 8.36 8.36 0.00 3.18
240 241 0.665369 CCGCCGAAGAAGTACGTGTT 60.665 55.000 0.00 0.00 0.00 3.32
241 242 1.080974 CCGCCGAAGAAGTACGTGT 60.081 57.895 0.00 0.00 0.00 4.49
242 243 2.442188 GCCGCCGAAGAAGTACGTG 61.442 63.158 0.00 0.00 0.00 4.49
243 244 2.126189 GCCGCCGAAGAAGTACGT 60.126 61.111 0.00 0.00 0.00 3.57
244 245 1.518572 ATGCCGCCGAAGAAGTACG 60.519 57.895 0.00 0.00 0.00 3.67
245 246 1.429148 CCATGCCGCCGAAGAAGTAC 61.429 60.000 0.00 0.00 0.00 2.73
246 247 1.153449 CCATGCCGCCGAAGAAGTA 60.153 57.895 0.00 0.00 0.00 2.24
247 248 2.436646 CCATGCCGCCGAAGAAGT 60.437 61.111 0.00 0.00 0.00 3.01
248 249 3.880846 GCCATGCCGCCGAAGAAG 61.881 66.667 0.00 0.00 0.00 2.85
269 270 3.474570 CTCCTTCCCTCCCAGCCG 61.475 72.222 0.00 0.00 0.00 5.52
270 271 3.093172 CCTCCTTCCCTCCCAGCC 61.093 72.222 0.00 0.00 0.00 4.85
271 272 2.041265 TCCTCCTTCCCTCCCAGC 59.959 66.667 0.00 0.00 0.00 4.85
272 273 1.383803 CCTCCTCCTTCCCTCCCAG 60.384 68.421 0.00 0.00 0.00 4.45
273 274 1.866997 TCCTCCTCCTTCCCTCCCA 60.867 63.158 0.00 0.00 0.00 4.37
274 275 1.074850 CTCCTCCTCCTTCCCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
275 276 0.565674 ATCTCCTCCTCCTTCCCTCC 59.434 60.000 0.00 0.00 0.00 4.30
276 277 2.046292 CAATCTCCTCCTCCTTCCCTC 58.954 57.143 0.00 0.00 0.00 4.30
277 278 1.344906 CCAATCTCCTCCTCCTTCCCT 60.345 57.143 0.00 0.00 0.00 4.20
278 279 1.135960 CCAATCTCCTCCTCCTTCCC 58.864 60.000 0.00 0.00 0.00 3.97
279 280 0.472044 GCCAATCTCCTCCTCCTTCC 59.528 60.000 0.00 0.00 0.00 3.46
280 281 0.105778 CGCCAATCTCCTCCTCCTTC 59.894 60.000 0.00 0.00 0.00 3.46
281 282 1.341156 CCGCCAATCTCCTCCTCCTT 61.341 60.000 0.00 0.00 0.00 3.36
282 283 1.764054 CCGCCAATCTCCTCCTCCT 60.764 63.158 0.00 0.00 0.00 3.69
283 284 2.812619 CCCGCCAATCTCCTCCTCC 61.813 68.421 0.00 0.00 0.00 4.30
284 285 1.753368 CTCCCGCCAATCTCCTCCTC 61.753 65.000 0.00 0.00 0.00 3.71
285 286 1.764054 CTCCCGCCAATCTCCTCCT 60.764 63.158 0.00 0.00 0.00 3.69
286 287 2.812619 CCTCCCGCCAATCTCCTCC 61.813 68.421 0.00 0.00 0.00 4.30
287 288 1.338136 TTCCTCCCGCCAATCTCCTC 61.338 60.000 0.00 0.00 0.00 3.71
288 289 0.695803 ATTCCTCCCGCCAATCTCCT 60.696 55.000 0.00 0.00 0.00 3.69
289 290 0.536006 CATTCCTCCCGCCAATCTCC 60.536 60.000 0.00 0.00 0.00 3.71
290 291 0.469917 TCATTCCTCCCGCCAATCTC 59.530 55.000 0.00 0.00 0.00 2.75
291 292 0.918983 TTCATTCCTCCCGCCAATCT 59.081 50.000 0.00 0.00 0.00 2.40
292 293 1.134098 TCTTCATTCCTCCCGCCAATC 60.134 52.381 0.00 0.00 0.00 2.67
293 294 0.918983 TCTTCATTCCTCCCGCCAAT 59.081 50.000 0.00 0.00 0.00 3.16
294 295 0.253044 CTCTTCATTCCTCCCGCCAA 59.747 55.000 0.00 0.00 0.00 4.52
295 296 0.617535 TCTCTTCATTCCTCCCGCCA 60.618 55.000 0.00 0.00 0.00 5.69
296 297 0.541863 TTCTCTTCATTCCTCCCGCC 59.458 55.000 0.00 0.00 0.00 6.13
297 298 2.158900 TCATTCTCTTCATTCCTCCCGC 60.159 50.000 0.00 0.00 0.00 6.13
298 299 3.386078 TCTCATTCTCTTCATTCCTCCCG 59.614 47.826 0.00 0.00 0.00 5.14
299 300 4.202346 CCTCTCATTCTCTTCATTCCTCCC 60.202 50.000 0.00 0.00 0.00 4.30
300 301 4.202346 CCCTCTCATTCTCTTCATTCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
301 302 4.653341 TCCCTCTCATTCTCTTCATTCCTC 59.347 45.833 0.00 0.00 0.00 3.71
302 303 4.629122 TCCCTCTCATTCTCTTCATTCCT 58.371 43.478 0.00 0.00 0.00 3.36
303 304 5.365021 TTCCCTCTCATTCTCTTCATTCC 57.635 43.478 0.00 0.00 0.00 3.01
304 305 4.815846 GCTTCCCTCTCATTCTCTTCATTC 59.184 45.833 0.00 0.00 0.00 2.67
305 306 4.385088 GGCTTCCCTCTCATTCTCTTCATT 60.385 45.833 0.00 0.00 0.00 2.57
306 307 3.136260 GGCTTCCCTCTCATTCTCTTCAT 59.864 47.826 0.00 0.00 0.00 2.57
307 308 2.503356 GGCTTCCCTCTCATTCTCTTCA 59.497 50.000 0.00 0.00 0.00 3.02
308 309 2.158827 GGGCTTCCCTCTCATTCTCTTC 60.159 54.545 0.00 0.00 41.34 2.87
309 310 1.843206 GGGCTTCCCTCTCATTCTCTT 59.157 52.381 0.00 0.00 41.34 2.85
310 311 1.506025 GGGCTTCCCTCTCATTCTCT 58.494 55.000 0.00 0.00 41.34 3.10
311 312 0.105778 CGGGCTTCCCTCTCATTCTC 59.894 60.000 0.00 0.00 42.67 2.87
312 313 1.341156 CCGGGCTTCCCTCTCATTCT 61.341 60.000 0.00 0.00 42.67 2.40
313 314 1.147153 CCGGGCTTCCCTCTCATTC 59.853 63.158 0.00 0.00 42.67 2.67
314 315 2.378634 CCCGGGCTTCCCTCTCATT 61.379 63.158 8.08 0.00 42.67 2.57
315 316 2.770048 CCCGGGCTTCCCTCTCAT 60.770 66.667 8.08 0.00 42.67 2.90
321 322 4.442454 CTTTCCCCCGGGCTTCCC 62.442 72.222 17.73 0.00 41.09 3.97
322 323 3.658422 ACTTTCCCCCGGGCTTCC 61.658 66.667 17.73 0.00 34.68 3.46
323 324 2.361230 CACTTTCCCCCGGGCTTC 60.361 66.667 17.73 0.00 34.68 3.86
324 325 3.979497 CCACTTTCCCCCGGGCTT 61.979 66.667 17.73 0.00 34.68 4.35
327 328 3.261677 TTCCCACTTTCCCCCGGG 61.262 66.667 15.80 15.80 40.32 5.73
328 329 1.785353 TTCTTCCCACTTTCCCCCGG 61.785 60.000 0.00 0.00 0.00 5.73
329 330 0.111639 TTTCTTCCCACTTTCCCCCG 59.888 55.000 0.00 0.00 0.00 5.73
330 331 1.629043 GTTTCTTCCCACTTTCCCCC 58.371 55.000 0.00 0.00 0.00 5.40
331 332 1.244816 CGTTTCTTCCCACTTTCCCC 58.755 55.000 0.00 0.00 0.00 4.81
332 333 1.244816 CCGTTTCTTCCCACTTTCCC 58.755 55.000 0.00 0.00 0.00 3.97
333 334 0.596577 GCCGTTTCTTCCCACTTTCC 59.403 55.000 0.00 0.00 0.00 3.13
334 335 1.266989 CTGCCGTTTCTTCCCACTTTC 59.733 52.381 0.00 0.00 0.00 2.62
335 336 1.318576 CTGCCGTTTCTTCCCACTTT 58.681 50.000 0.00 0.00 0.00 2.66
336 337 0.537371 CCTGCCGTTTCTTCCCACTT 60.537 55.000 0.00 0.00 0.00 3.16
337 338 1.073199 CCTGCCGTTTCTTCCCACT 59.927 57.895 0.00 0.00 0.00 4.00
338 339 0.536460 TTCCTGCCGTTTCTTCCCAC 60.536 55.000 0.00 0.00 0.00 4.61
339 340 0.183971 TTTCCTGCCGTTTCTTCCCA 59.816 50.000 0.00 0.00 0.00 4.37
340 341 1.269723 CTTTTCCTGCCGTTTCTTCCC 59.730 52.381 0.00 0.00 0.00 3.97
341 342 1.269723 CCTTTTCCTGCCGTTTCTTCC 59.730 52.381 0.00 0.00 0.00 3.46
342 343 1.335964 GCCTTTTCCTGCCGTTTCTTC 60.336 52.381 0.00 0.00 0.00 2.87
343 344 0.673985 GCCTTTTCCTGCCGTTTCTT 59.326 50.000 0.00 0.00 0.00 2.52
344 345 1.179174 GGCCTTTTCCTGCCGTTTCT 61.179 55.000 0.00 0.00 38.00 2.52
345 346 1.289066 GGCCTTTTCCTGCCGTTTC 59.711 57.895 0.00 0.00 38.00 2.78
346 347 3.455152 GGCCTTTTCCTGCCGTTT 58.545 55.556 0.00 0.00 38.00 3.60
350 351 2.923910 AGGAGGGCCTTTTCCTGCC 61.924 63.158 19.05 1.45 43.90 4.85
351 352 2.766660 AGGAGGGCCTTTTCCTGC 59.233 61.111 19.05 6.32 43.90 4.85
364 365 3.578272 CTCCGTCGGCGAGAGGAG 61.578 72.222 32.71 32.71 43.43 3.69
384 385 3.431725 CGAAAAGAGGCGTGGGGC 61.432 66.667 0.00 0.00 42.51 5.80
385 386 2.746277 CCGAAAAGAGGCGTGGGG 60.746 66.667 0.00 0.00 0.00 4.96
386 387 2.746277 CCCGAAAAGAGGCGTGGG 60.746 66.667 0.00 0.00 0.00 4.61
387 388 2.032071 ACCCGAAAAGAGGCGTGG 59.968 61.111 0.00 0.00 0.00 4.94
388 389 2.966309 GCACCCGAAAAGAGGCGTG 61.966 63.158 0.00 0.00 34.92 5.34
389 390 2.668550 GCACCCGAAAAGAGGCGT 60.669 61.111 0.00 0.00 0.00 5.68
390 391 3.788766 CGCACCCGAAAAGAGGCG 61.789 66.667 0.00 0.00 38.45 5.52
391 392 4.103103 GCGCACCCGAAAAGAGGC 62.103 66.667 0.30 0.00 36.29 4.70
392 393 3.431725 GGCGCACCCGAAAAGAGG 61.432 66.667 10.83 0.00 36.29 3.69
393 394 2.258013 TTGGCGCACCCGAAAAGAG 61.258 57.895 10.83 0.00 36.29 2.85
394 395 2.203224 TTGGCGCACCCGAAAAGA 60.203 55.556 10.83 0.00 36.29 2.52
395 396 2.050442 GTTGGCGCACCCGAAAAG 60.050 61.111 10.83 0.00 36.29 2.27
396 397 2.517402 AGTTGGCGCACCCGAAAA 60.517 55.556 10.83 0.00 36.29 2.29
397 398 3.283684 CAGTTGGCGCACCCGAAA 61.284 61.111 10.83 0.00 36.29 3.46
398 399 2.661840 TAACAGTTGGCGCACCCGAA 62.662 55.000 10.83 0.00 36.29 4.30
399 400 2.457743 ATAACAGTTGGCGCACCCGA 62.458 55.000 10.83 0.00 36.29 5.14
400 401 1.582610 AATAACAGTTGGCGCACCCG 61.583 55.000 10.83 0.00 35.87 5.28
401 402 0.601057 AAATAACAGTTGGCGCACCC 59.399 50.000 10.83 0.00 33.59 4.61
402 403 1.727857 CGAAATAACAGTTGGCGCACC 60.728 52.381 10.83 0.00 0.00 5.01
403 404 1.602191 CGAAATAACAGTTGGCGCAC 58.398 50.000 10.83 0.00 0.00 5.34
404 405 0.519519 CCGAAATAACAGTTGGCGCA 59.480 50.000 10.83 0.00 0.00 6.09
405 406 0.796870 GCCGAAATAACAGTTGGCGC 60.797 55.000 0.00 0.00 32.14 6.53
406 407 0.179174 GGCCGAAATAACAGTTGGCG 60.179 55.000 5.69 0.25 43.36 5.69
407 408 0.172578 GGGCCGAAATAACAGTTGGC 59.827 55.000 0.00 3.43 41.72 4.52
408 409 1.540267 TGGGCCGAAATAACAGTTGG 58.460 50.000 0.00 0.00 0.00 3.77
409 410 2.352323 GGTTGGGCCGAAATAACAGTTG 60.352 50.000 0.01 0.00 0.00 3.16
410 411 1.890489 GGTTGGGCCGAAATAACAGTT 59.110 47.619 0.01 0.00 0.00 3.16
411 412 1.541379 GGTTGGGCCGAAATAACAGT 58.459 50.000 0.01 0.00 0.00 3.55
412 413 0.815095 GGGTTGGGCCGAAATAACAG 59.185 55.000 0.01 0.00 38.44 3.16
413 414 0.961358 CGGGTTGGGCCGAAATAACA 60.961 55.000 0.01 0.00 38.44 2.41
414 415 0.677414 TCGGGTTGGGCCGAAATAAC 60.677 55.000 0.01 0.00 38.44 1.89
415 416 0.677414 GTCGGGTTGGGCCGAAATAA 60.677 55.000 0.01 0.00 40.15 1.40
416 417 1.078285 GTCGGGTTGGGCCGAAATA 60.078 57.895 0.01 0.00 40.15 1.40
417 418 2.360726 GTCGGGTTGGGCCGAAAT 60.361 61.111 0.01 0.00 40.15 2.17
418 419 2.905935 TTTGTCGGGTTGGGCCGAAA 62.906 55.000 0.01 0.00 40.15 3.46
419 420 2.905935 TTTTGTCGGGTTGGGCCGAA 62.906 55.000 0.00 0.00 40.15 4.30
420 421 2.905935 TTTTTGTCGGGTTGGGCCGA 62.906 55.000 0.00 0.00 38.44 5.54
421 422 2.491022 TTTTTGTCGGGTTGGGCCG 61.491 57.895 0.00 0.00 38.44 6.13
422 423 3.539842 TTTTTGTCGGGTTGGGCC 58.460 55.556 0.00 0.00 0.00 5.80
436 437 2.814336 GCGTCTTCAGGAGTCCATTTTT 59.186 45.455 12.86 0.00 0.00 1.94
437 438 2.427506 GCGTCTTCAGGAGTCCATTTT 58.572 47.619 12.86 0.00 0.00 1.82
438 439 1.673033 CGCGTCTTCAGGAGTCCATTT 60.673 52.381 12.86 0.00 0.00 2.32
439 440 0.108615 CGCGTCTTCAGGAGTCCATT 60.109 55.000 12.86 0.00 0.00 3.16
440 441 0.965866 TCGCGTCTTCAGGAGTCCAT 60.966 55.000 12.86 0.00 0.00 3.41
441 442 0.965866 ATCGCGTCTTCAGGAGTCCA 60.966 55.000 12.86 0.00 0.00 4.02
442 443 0.173708 AATCGCGTCTTCAGGAGTCC 59.826 55.000 5.77 0.00 0.00 3.85
443 444 1.272781 CAATCGCGTCTTCAGGAGTC 58.727 55.000 5.77 0.00 0.00 3.36
444 445 0.108615 CCAATCGCGTCTTCAGGAGT 60.109 55.000 5.77 0.00 0.00 3.85
445 446 0.807667 CCCAATCGCGTCTTCAGGAG 60.808 60.000 5.77 0.00 0.00 3.69
446 447 1.218047 CCCAATCGCGTCTTCAGGA 59.782 57.895 5.77 0.00 0.00 3.86
447 448 2.464459 GCCCAATCGCGTCTTCAGG 61.464 63.158 5.77 5.79 0.00 3.86
448 449 2.464459 GGCCCAATCGCGTCTTCAG 61.464 63.158 5.77 0.00 0.00 3.02
449 450 1.609635 TAGGCCCAATCGCGTCTTCA 61.610 55.000 5.77 0.00 0.00 3.02
450 451 0.249911 ATAGGCCCAATCGCGTCTTC 60.250 55.000 5.77 0.00 0.00 2.87
451 452 0.180406 AATAGGCCCAATCGCGTCTT 59.820 50.000 5.77 0.00 0.00 3.01
452 453 0.180406 AAATAGGCCCAATCGCGTCT 59.820 50.000 5.77 0.00 0.00 4.18
453 454 1.002792 GAAAATAGGCCCAATCGCGTC 60.003 52.381 5.77 0.00 0.00 5.19
454 455 1.021968 GAAAATAGGCCCAATCGCGT 58.978 50.000 5.77 0.00 0.00 6.01
455 456 0.041312 CGAAAATAGGCCCAATCGCG 60.041 55.000 0.00 0.00 0.00 5.87
456 457 0.317854 GCGAAAATAGGCCCAATCGC 60.318 55.000 18.75 18.75 46.89 4.58
457 458 0.310854 GGCGAAAATAGGCCCAATCG 59.689 55.000 0.00 4.25 43.64 3.34
464 465 3.949047 CGGCGGGCGAAAATAGGC 61.949 66.667 20.10 0.00 0.00 3.93
465 466 3.276846 CCGGCGGGCGAAAATAGG 61.277 66.667 26.33 2.39 0.00 2.57
488 489 0.698818 AGGTCCCTCAGGCGATTTTT 59.301 50.000 0.00 0.00 0.00 1.94
489 490 0.035056 CAGGTCCCTCAGGCGATTTT 60.035 55.000 0.00 0.00 0.00 1.82
490 491 1.201429 ACAGGTCCCTCAGGCGATTT 61.201 55.000 0.00 0.00 0.00 2.17
491 492 1.201429 AACAGGTCCCTCAGGCGATT 61.201 55.000 0.00 0.00 0.00 3.34
492 493 1.613630 AACAGGTCCCTCAGGCGAT 60.614 57.895 0.00 0.00 0.00 4.58
493 494 2.203788 AACAGGTCCCTCAGGCGA 60.204 61.111 0.00 0.00 0.00 5.54
494 495 2.046892 CAACAGGTCCCTCAGGCG 60.047 66.667 0.00 0.00 0.00 5.52
495 496 2.352805 CCAACAGGTCCCTCAGGC 59.647 66.667 0.00 0.00 0.00 4.85
496 497 2.606587 CCCCAACAGGTCCCTCAGG 61.607 68.421 0.00 0.00 0.00 3.86
497 498 0.916358 ATCCCCAACAGGTCCCTCAG 60.916 60.000 0.00 0.00 0.00 3.35
498 499 1.163309 ATCCCCAACAGGTCCCTCA 59.837 57.895 0.00 0.00 0.00 3.86
499 500 1.609783 CATCCCCAACAGGTCCCTC 59.390 63.158 0.00 0.00 0.00 4.30
500 501 2.616458 GCATCCCCAACAGGTCCCT 61.616 63.158 0.00 0.00 0.00 4.20
501 502 2.043953 GCATCCCCAACAGGTCCC 60.044 66.667 0.00 0.00 0.00 4.46
502 503 2.438434 CGCATCCCCAACAGGTCC 60.438 66.667 0.00 0.00 0.00 4.46
503 504 2.438434 CCGCATCCCCAACAGGTC 60.438 66.667 0.00 0.00 0.00 3.85
504 505 4.740822 GCCGCATCCCCAACAGGT 62.741 66.667 0.00 0.00 0.00 4.00
505 506 4.431131 AGCCGCATCCCCAACAGG 62.431 66.667 0.00 0.00 0.00 4.00
506 507 3.136123 CAGCCGCATCCCCAACAG 61.136 66.667 0.00 0.00 0.00 3.16
507 508 3.203086 TTCAGCCGCATCCCCAACA 62.203 57.895 0.00 0.00 0.00 3.33
508 509 2.361104 TTCAGCCGCATCCCCAAC 60.361 61.111 0.00 0.00 0.00 3.77
509 510 1.925285 ATCTTCAGCCGCATCCCCAA 61.925 55.000 0.00 0.00 0.00 4.12
510 511 2.377810 ATCTTCAGCCGCATCCCCA 61.378 57.895 0.00 0.00 0.00 4.96
511 512 1.895707 CATCTTCAGCCGCATCCCC 60.896 63.158 0.00 0.00 0.00 4.81
512 513 2.550101 GCATCTTCAGCCGCATCCC 61.550 63.158 0.00 0.00 0.00 3.85
513 514 1.505477 GAGCATCTTCAGCCGCATCC 61.505 60.000 0.00 0.00 0.00 3.51
514 515 1.940334 GAGCATCTTCAGCCGCATC 59.060 57.895 0.00 0.00 0.00 3.91
515 516 4.137879 GAGCATCTTCAGCCGCAT 57.862 55.556 0.00 0.00 0.00 4.73
529 530 1.214589 CCACCTGCATTGCAAGAGC 59.785 57.895 14.03 17.12 38.41 4.09
530 531 1.825090 TACCACCTGCATTGCAAGAG 58.175 50.000 14.03 6.01 38.41 2.85
531 532 2.368439 GATACCACCTGCATTGCAAGA 58.632 47.619 14.03 0.00 38.41 3.02
535 536 0.940126 CTCGATACCACCTGCATTGC 59.060 55.000 0.46 0.46 0.00 3.56
543 544 2.289506 GGGGATAAAGCTCGATACCACC 60.290 54.545 10.51 0.00 0.00 4.61
653 654 0.391263 CCAAGCGTTAGGGAGACACC 60.391 60.000 0.00 0.00 38.08 4.16
828 859 5.009811 GCTACTCAATTACGATACCACCTCT 59.990 44.000 0.00 0.00 0.00 3.69
837 868 1.411246 TGCCCGCTACTCAATTACGAT 59.589 47.619 0.00 0.00 0.00 3.73
839 870 1.593006 CTTGCCCGCTACTCAATTACG 59.407 52.381 0.00 0.00 0.00 3.18
862 893 2.892425 CACGGGAAGCGCCATCTC 60.892 66.667 2.29 1.29 38.95 2.75
918 949 0.391597 GGAAGACACGGACCAAGTCA 59.608 55.000 13.92 0.00 33.68 3.41
919 950 0.391597 TGGAAGACACGGACCAAGTC 59.608 55.000 5.39 5.39 0.00 3.01
937 968 1.695597 AGGGAGGGATGGGCTTCTG 60.696 63.158 0.00 0.00 0.00 3.02
1012 1062 4.081642 TGGAGGCTGTGTAAAGCTAACTAG 60.082 45.833 0.00 0.00 43.06 2.57
1013 1063 3.835978 TGGAGGCTGTGTAAAGCTAACTA 59.164 43.478 0.00 0.00 43.06 2.24
1014 1064 2.637872 TGGAGGCTGTGTAAAGCTAACT 59.362 45.455 0.00 0.00 43.06 2.24
1015 1065 3.053831 TGGAGGCTGTGTAAAGCTAAC 57.946 47.619 0.00 0.00 43.06 2.34
1016 1066 4.009675 CAATGGAGGCTGTGTAAAGCTAA 58.990 43.478 0.00 0.00 43.06 3.09
1017 1067 3.263170 TCAATGGAGGCTGTGTAAAGCTA 59.737 43.478 0.00 0.00 43.06 3.32
1050 1100 3.621715 GGACGTGTAAGCTAAGGATTTGG 59.378 47.826 0.00 0.00 0.00 3.28
1055 1105 3.093814 TGATGGACGTGTAAGCTAAGGA 58.906 45.455 0.00 0.00 0.00 3.36
1095 1145 2.932614 GTGTTCATCTCTCCAACGGATG 59.067 50.000 0.00 0.00 38.41 3.51
1096 1146 2.417379 CGTGTTCATCTCTCCAACGGAT 60.417 50.000 0.00 0.00 0.00 4.18
1097 1147 1.067846 CGTGTTCATCTCTCCAACGGA 60.068 52.381 0.00 0.00 0.00 4.69
1098 1148 1.336887 ACGTGTTCATCTCTCCAACGG 60.337 52.381 0.00 0.00 0.00 4.44
1099 1149 2.065993 ACGTGTTCATCTCTCCAACG 57.934 50.000 0.00 0.00 0.00 4.10
1100 1150 3.059597 CACAACGTGTTCATCTCTCCAAC 60.060 47.826 0.00 0.00 0.00 3.77
1212 1262 0.453782 CAGCACGTCGTACATCGTCA 60.454 55.000 0.00 0.00 38.23 4.35
1345 1395 3.127352 GAGCACCTCGTAGGCCTCG 62.127 68.421 9.68 13.76 39.63 4.63
1578 1636 3.554692 CGGCGCTGCGGTTTAGAG 61.555 66.667 24.61 0.00 0.00 2.43
1626 1684 6.624352 AGGCGAAACTACGTAGAATATACA 57.376 37.500 28.74 0.00 35.59 2.29
1669 1727 1.011333 CGAATCCCACCGCGTAAAAT 58.989 50.000 4.92 0.00 0.00 1.82
1688 1746 5.938125 ACACTATACAGTTTCATCACCAACC 59.062 40.000 0.00 0.00 30.46 3.77
1810 1874 6.347079 CGTTTGTCTTTCGGCTTTTCTATACA 60.347 38.462 0.00 0.00 0.00 2.29
1813 1877 4.612939 GCGTTTGTCTTTCGGCTTTTCTAT 60.613 41.667 0.00 0.00 0.00 1.98
1814 1878 3.303526 GCGTTTGTCTTTCGGCTTTTCTA 60.304 43.478 0.00 0.00 0.00 2.10
1816 1880 1.779157 GCGTTTGTCTTTCGGCTTTTC 59.221 47.619 0.00 0.00 0.00 2.29
1819 1883 0.736053 TTGCGTTTGTCTTTCGGCTT 59.264 45.000 0.00 0.00 0.00 4.35
1820 1884 0.736053 TTTGCGTTTGTCTTTCGGCT 59.264 45.000 0.00 0.00 0.00 5.52
1821 1885 1.451651 CATTTGCGTTTGTCTTTCGGC 59.548 47.619 0.00 0.00 0.00 5.54
1822 1886 2.719046 GACATTTGCGTTTGTCTTTCGG 59.281 45.455 5.70 0.00 39.30 4.30
1823 1887 3.998441 GACATTTGCGTTTGTCTTTCG 57.002 42.857 5.70 0.00 39.30 3.46
1863 1927 5.593095 GGAGTGGTTTAGTGACCTTCTTTTT 59.407 40.000 0.00 0.00 40.47 1.94
1864 1928 5.104067 AGGAGTGGTTTAGTGACCTTCTTTT 60.104 40.000 0.00 0.00 40.47 2.27
1865 1929 4.412528 AGGAGTGGTTTAGTGACCTTCTTT 59.587 41.667 0.00 0.00 40.47 2.52
1866 1930 3.974642 AGGAGTGGTTTAGTGACCTTCTT 59.025 43.478 0.00 0.00 40.47 2.52
1867 1931 3.588569 AGGAGTGGTTTAGTGACCTTCT 58.411 45.455 0.00 0.00 40.47 2.85
1868 1932 4.353383 AAGGAGTGGTTTAGTGACCTTC 57.647 45.455 0.00 0.00 40.47 3.46
1869 1933 4.790718 AAAGGAGTGGTTTAGTGACCTT 57.209 40.909 0.00 0.00 40.47 3.50
1870 1934 4.790718 AAAAGGAGTGGTTTAGTGACCT 57.209 40.909 0.00 0.00 40.47 3.85
1885 1949 7.400599 TCTAGAACTAGAATGCGTAAAAGGA 57.599 36.000 8.83 0.00 39.08 3.36
2020 2084 4.038763 TCAAAGGTTGTCGTATGTGTCTCT 59.961 41.667 0.00 0.00 0.00 3.10
2021 2085 4.304110 TCAAAGGTTGTCGTATGTGTCTC 58.696 43.478 0.00 0.00 0.00 3.36
2022 2086 4.330944 TCAAAGGTTGTCGTATGTGTCT 57.669 40.909 0.00 0.00 0.00 3.41
2023 2087 5.202640 GTTTCAAAGGTTGTCGTATGTGTC 58.797 41.667 0.00 0.00 0.00 3.67
2024 2088 4.636648 TGTTTCAAAGGTTGTCGTATGTGT 59.363 37.500 0.00 0.00 0.00 3.72
2025 2089 5.007234 TCTGTTTCAAAGGTTGTCGTATGTG 59.993 40.000 0.00 0.00 0.00 3.21
2027 2091 5.236478 ACTCTGTTTCAAAGGTTGTCGTATG 59.764 40.000 0.00 0.00 0.00 2.39
2073 2137 3.701542 TCTTGGTCGATGCTCTAGAATGT 59.298 43.478 0.00 0.00 0.00 2.71
2148 2212 5.867716 TGACTGAAAAGTTATTCCTAGACGC 59.132 40.000 0.00 0.00 0.00 5.19
2168 2232 8.820831 ACTTATCCTGCTATTGCTATATTGACT 58.179 33.333 0.00 0.00 40.48 3.41
2169 2233 9.442047 AACTTATCCTGCTATTGCTATATTGAC 57.558 33.333 0.00 0.00 40.48 3.18
2173 2237 9.877178 GTGTAACTTATCCTGCTATTGCTATAT 57.123 33.333 0.00 0.00 40.48 0.86
2193 2257 3.821033 AGATGTTGAGCCCAAAGTGTAAC 59.179 43.478 0.00 0.00 33.49 2.50
2194 2258 4.098914 AGATGTTGAGCCCAAAGTGTAA 57.901 40.909 0.00 0.00 33.49 2.41
2195 2259 3.788227 AGATGTTGAGCCCAAAGTGTA 57.212 42.857 0.00 0.00 33.49 2.90
2196 2260 2.664402 AGATGTTGAGCCCAAAGTGT 57.336 45.000 0.00 0.00 33.49 3.55
2197 2261 3.679389 AGTAGATGTTGAGCCCAAAGTG 58.321 45.455 0.00 0.00 33.49 3.16
2198 2262 4.074970 CAAGTAGATGTTGAGCCCAAAGT 58.925 43.478 0.00 0.00 33.49 2.66
2199 2263 4.074970 ACAAGTAGATGTTGAGCCCAAAG 58.925 43.478 0.00 0.00 33.49 2.77
2200 2264 4.098914 ACAAGTAGATGTTGAGCCCAAA 57.901 40.909 0.00 0.00 33.49 3.28
2201 2265 3.788227 ACAAGTAGATGTTGAGCCCAA 57.212 42.857 0.00 0.00 0.00 4.12
2202 2266 3.788227 AACAAGTAGATGTTGAGCCCA 57.212 42.857 0.00 0.00 41.78 5.36
2203 2267 6.569179 TTTTAACAAGTAGATGTTGAGCCC 57.431 37.500 3.10 0.00 43.13 5.19
2253 2318 2.203437 GACGGTTTGGGCAAGGGT 60.203 61.111 0.00 0.00 0.00 4.34
2365 2432 3.973206 TCAACGATGGTTACATGTCCT 57.027 42.857 0.00 0.00 37.47 3.85
2465 2534 1.067213 GCGAGTGCTTCCTCTCTTCTT 60.067 52.381 0.00 0.00 38.39 2.52
2698 2767 2.081787 TGTCCAGGGGCTTGGTGAA 61.082 57.895 8.13 0.00 39.35 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.