Multiple sequence alignment - TraesCS4B01G175200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G175200 chr4B 100.000 8084 0 0 1 8084 385217775 385209692 0.000000e+00 14929.0
1 TraesCS4B01G175200 chr4B 98.468 5025 70 5 1665 6688 476859906 476864924 0.000000e+00 8846.0
2 TraesCS4B01G175200 chr4B 90.016 5008 469 19 1682 6676 554966343 554961354 0.000000e+00 6449.0
3 TraesCS4B01G175200 chr4B 89.749 5014 487 17 1682 6676 99047666 99042661 0.000000e+00 6386.0
4 TraesCS4B01G175200 chr4B 98.182 55 1 0 647 701 385217075 385217021 6.680000e-16 97.1
5 TraesCS4B01G175200 chr4B 98.182 55 1 0 701 755 385217129 385217075 6.680000e-16 97.1
6 TraesCS4B01G175200 chr3A 98.702 5008 61 3 1670 6676 728240144 728245148 0.000000e+00 8885.0
7 TraesCS4B01G175200 chr3A 83.548 699 86 8 4 701 373356337 373355667 1.920000e-175 627.0
8 TraesCS4B01G175200 chr5B 90.515 5008 437 22 1684 6676 705044961 705049945 0.000000e+00 6582.0
9 TraesCS4B01G175200 chr7B 90.162 5001 472 15 1687 6676 71250635 71255626 0.000000e+00 6492.0
10 TraesCS4B01G175200 chr7B 81.456 577 102 4 1 576 368206897 368207469 1.230000e-127 468.0
11 TraesCS4B01G175200 chr4A 89.483 5011 498 20 1684 6676 307089583 307094582 0.000000e+00 6307.0
12 TraesCS4B01G175200 chr4A 88.731 4428 468 18 2265 6680 120578563 120574155 0.000000e+00 5384.0
13 TraesCS4B01G175200 chr4A 94.891 822 31 5 855 1670 168545184 168546000 0.000000e+00 1275.0
14 TraesCS4B01G175200 chr4A 91.434 502 32 6 6720 7214 168546060 168546557 0.000000e+00 678.0
15 TraesCS4B01G175200 chr4A 87.965 457 19 22 7207 7660 168547630 168548053 2.600000e-139 507.0
16 TraesCS4B01G175200 chr4A 100.000 33 0 0 6677 6709 168545996 168546028 2.440000e-05 62.1
17 TraesCS4B01G175200 chr7D 94.248 3929 211 9 2758 6678 632069429 632073350 0.000000e+00 5989.0
18 TraesCS4B01G175200 chr7D 83.148 540 91 0 3 542 446360533 446361072 2.030000e-135 494.0
19 TraesCS4B01G175200 chr2D 87.765 5043 550 43 1671 6676 631997174 632002186 0.000000e+00 5832.0
20 TraesCS4B01G175200 chr2D 77.869 244 40 2 7780 8012 135386104 135386344 1.090000e-28 139.0
21 TraesCS4B01G175200 chr2A 87.038 1381 157 20 5307 6676 48352896 48351527 0.000000e+00 1539.0
22 TraesCS4B01G175200 chr4D 92.620 962 46 7 710 1670 308546013 308545076 0.000000e+00 1360.0
23 TraesCS4B01G175200 chr4D 91.463 902 42 20 6789 7680 308544866 308543990 0.000000e+00 1206.0
24 TraesCS4B01G175200 chr4D 89.803 304 30 1 7780 8082 308541858 308541555 9.840000e-104 388.0
25 TraesCS4B01G175200 chr4D 96.032 126 4 1 7665 7789 308542587 308542462 3.820000e-48 204.0
26 TraesCS4B01G175200 chr4D 100.000 29 0 0 6677 6705 308545080 308545052 4.000000e-03 54.7
27 TraesCS4B01G175200 chr6B 94.889 450 20 2 1800 2247 36471469 36471917 0.000000e+00 701.0
28 TraesCS4B01G175200 chr6B 92.233 206 15 1 1671 1875 36610441 36610646 2.850000e-74 291.0
29 TraesCS4B01G175200 chr3B 82.596 701 106 9 1 699 378082840 378083526 8.970000e-169 604.0
30 TraesCS4B01G175200 chr3B 97.368 38 1 0 6767 6804 746797678 746797641 1.880000e-06 65.8
31 TraesCS4B01G175200 chr5D 83.359 655 99 6 1 655 10045493 10044849 1.500000e-166 597.0
32 TraesCS4B01G175200 chr5A 83.813 556 85 4 23 578 29687937 29688487 2.580000e-144 523.0
33 TraesCS4B01G175200 chr1D 81.718 547 98 2 1 546 252523270 252522725 9.560000e-124 455.0
34 TraesCS4B01G175200 chr1D 81.852 540 98 0 1 540 297319475 297320014 9.560000e-124 455.0
35 TraesCS4B01G175200 chr1D 80.678 590 103 10 1 586 415227909 415227327 1.600000e-121 448.0
36 TraesCS4B01G175200 chr2B 80.328 244 34 5 7783 8015 244271298 244271058 1.080000e-38 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G175200 chr4B 385209692 385217775 8083 True 5041.066667 14929 98.7880 1 8084 3 chr4B.!!$R3 8083
1 TraesCS4B01G175200 chr4B 476859906 476864924 5018 False 8846.000000 8846 98.4680 1665 6688 1 chr4B.!!$F1 5023
2 TraesCS4B01G175200 chr4B 554961354 554966343 4989 True 6449.000000 6449 90.0160 1682 6676 1 chr4B.!!$R2 4994
3 TraesCS4B01G175200 chr4B 99042661 99047666 5005 True 6386.000000 6386 89.7490 1682 6676 1 chr4B.!!$R1 4994
4 TraesCS4B01G175200 chr3A 728240144 728245148 5004 False 8885.000000 8885 98.7020 1670 6676 1 chr3A.!!$F1 5006
5 TraesCS4B01G175200 chr3A 373355667 373356337 670 True 627.000000 627 83.5480 4 701 1 chr3A.!!$R1 697
6 TraesCS4B01G175200 chr5B 705044961 705049945 4984 False 6582.000000 6582 90.5150 1684 6676 1 chr5B.!!$F1 4992
7 TraesCS4B01G175200 chr7B 71250635 71255626 4991 False 6492.000000 6492 90.1620 1687 6676 1 chr7B.!!$F1 4989
8 TraesCS4B01G175200 chr7B 368206897 368207469 572 False 468.000000 468 81.4560 1 576 1 chr7B.!!$F2 575
9 TraesCS4B01G175200 chr4A 307089583 307094582 4999 False 6307.000000 6307 89.4830 1684 6676 1 chr4A.!!$F1 4992
10 TraesCS4B01G175200 chr4A 120574155 120578563 4408 True 5384.000000 5384 88.7310 2265 6680 1 chr4A.!!$R1 4415
11 TraesCS4B01G175200 chr4A 168545184 168548053 2869 False 630.525000 1275 93.5725 855 7660 4 chr4A.!!$F2 6805
12 TraesCS4B01G175200 chr7D 632069429 632073350 3921 False 5989.000000 5989 94.2480 2758 6678 1 chr7D.!!$F2 3920
13 TraesCS4B01G175200 chr7D 446360533 446361072 539 False 494.000000 494 83.1480 3 542 1 chr7D.!!$F1 539
14 TraesCS4B01G175200 chr2D 631997174 632002186 5012 False 5832.000000 5832 87.7650 1671 6676 1 chr2D.!!$F2 5005
15 TraesCS4B01G175200 chr2A 48351527 48352896 1369 True 1539.000000 1539 87.0380 5307 6676 1 chr2A.!!$R1 1369
16 TraesCS4B01G175200 chr4D 308541555 308546013 4458 True 642.540000 1360 93.9836 710 8082 5 chr4D.!!$R1 7372
17 TraesCS4B01G175200 chr3B 378082840 378083526 686 False 604.000000 604 82.5960 1 699 1 chr3B.!!$F1 698
18 TraesCS4B01G175200 chr5D 10044849 10045493 644 True 597.000000 597 83.3590 1 655 1 chr5D.!!$R1 654
19 TraesCS4B01G175200 chr5A 29687937 29688487 550 False 523.000000 523 83.8130 23 578 1 chr5A.!!$F1 555
20 TraesCS4B01G175200 chr1D 252522725 252523270 545 True 455.000000 455 81.7180 1 546 1 chr1D.!!$R1 545
21 TraesCS4B01G175200 chr1D 297319475 297320014 539 False 455.000000 455 81.8520 1 540 1 chr1D.!!$F1 539
22 TraesCS4B01G175200 chr1D 415227327 415227909 582 True 448.000000 448 80.6780 1 586 1 chr1D.!!$R2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 526 0.033504 TCAGGTCCAGTCTTTGCGTC 59.966 55.000 0.00 0.00 0.00 5.19 F
528 531 0.179234 TCCAGTCTTTGCGTCACCAA 59.821 50.000 0.00 0.00 0.00 3.67 F
883 886 0.233848 CGTAGCAACGGTTTGGACAC 59.766 55.000 0.00 0.00 45.50 3.67 F
943 950 2.184322 CCCCGTCTCCACATGTCG 59.816 66.667 0.00 0.00 0.00 4.35 F
1587 1596 2.525096 CGTCTCGTGCGTAATTAGACAC 59.475 50.000 10.31 7.45 37.09 3.67 F
2311 2341 3.492482 CGCAAAACCTCCTGTGGATTTTT 60.492 43.478 0.00 0.00 31.12 1.94 F
3574 3614 1.446792 CGCTGGTTGCAGACGATCT 60.447 57.895 0.00 0.00 43.06 2.75 F
4460 4527 1.069636 GTGGCAGTGAGAAAAGCTTCG 60.070 52.381 0.00 0.00 36.61 3.79 F
5555 5778 1.122632 TTTGGCACTCCGGGTAGTCA 61.123 55.000 0.00 0.00 34.14 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 1685 0.744281 AACGCTTCCACCAAACCAAG 59.256 50.000 0.00 0.00 0.00 3.61 R
2132 2162 3.502979 GGAATTGGGTGTAAAGCAACGTA 59.497 43.478 0.00 0.00 35.08 3.57 R
2690 2724 6.901300 AGAAGGTTCAGGATGGTATAGTGTTA 59.099 38.462 0.00 0.00 36.16 2.41 R
3117 3151 0.392461 GCTATTGCCGTGTCCAAGGA 60.392 55.000 3.30 0.00 31.21 3.36 R
3574 3614 2.439409 CAACACCTGATGCATCTCCAA 58.561 47.619 26.32 6.27 0.00 3.53 R
4019 4077 1.420138 GGAACCAGTTCTTGTCTCCCA 59.580 52.381 10.19 0.00 39.45 4.37 R
5555 5778 0.466922 AGCAGCAGCAACAAGAAGGT 60.467 50.000 3.17 0.00 45.49 3.50 R
6444 6677 0.108898 CAGAGCCACGTCTCTTCCTG 60.109 60.000 4.12 0.00 41.22 3.86 R
7126 7480 0.321210 TACAGTTGCACCGATGTGGG 60.321 55.000 0.00 0.00 44.64 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.067605 ACGTTGTCCACCTCCACCA 61.068 57.895 0.00 0.00 0.00 4.17
72 73 1.198094 TCCACCACCACCGACATCAT 61.198 55.000 0.00 0.00 0.00 2.45
82 83 2.111384 ACCGACATCATTGCCTACTCT 58.889 47.619 0.00 0.00 0.00 3.24
138 139 2.325583 TCCACTTCGGGATATTGTGC 57.674 50.000 0.00 0.00 34.36 4.57
224 225 1.068281 CTGAGGCTGAGTATCACGCAT 59.932 52.381 0.00 0.00 42.56 4.73
226 227 2.693074 TGAGGCTGAGTATCACGCATTA 59.307 45.455 0.00 0.00 42.56 1.90
227 228 3.053455 GAGGCTGAGTATCACGCATTAC 58.947 50.000 0.00 0.00 42.56 1.89
247 249 0.098200 CTAATGTCGTCGCCGAGTGA 59.902 55.000 0.00 0.00 45.26 3.41
251 253 3.515286 TCGTCGCCGAGTGATCCC 61.515 66.667 0.00 0.00 38.40 3.85
302 304 2.029073 CTGTCGACAAGGCCACGT 59.971 61.111 20.49 0.00 0.00 4.49
322 324 3.192466 GTTGGTCTACTGTGACAACGTT 58.808 45.455 0.00 0.00 38.61 3.99
333 335 2.154427 GACAACGTTTCCGCCGTCTG 62.154 60.000 0.00 0.00 37.61 3.51
363 365 1.261938 AACCCGGTCCATCATCGTCA 61.262 55.000 0.00 0.00 0.00 4.35
424 427 2.092753 ACAGGTGGCTCTTGGTCATATG 60.093 50.000 3.71 0.00 0.00 1.78
434 437 5.626809 GCTCTTGGTCATATGTGTGTCCTAA 60.627 44.000 1.90 0.00 0.00 2.69
486 489 2.170607 TCATGACTAAGGGCTTGCCTAC 59.829 50.000 11.71 0.00 0.00 3.18
487 490 1.651737 TGACTAAGGGCTTGCCTACA 58.348 50.000 11.71 1.29 0.00 2.74
488 491 1.982226 TGACTAAGGGCTTGCCTACAA 59.018 47.619 11.71 0.00 0.00 2.41
489 492 2.576191 TGACTAAGGGCTTGCCTACAAT 59.424 45.455 11.71 0.00 34.61 2.71
490 493 2.945668 GACTAAGGGCTTGCCTACAATG 59.054 50.000 11.71 0.95 34.61 2.82
491 494 2.308866 ACTAAGGGCTTGCCTACAATGT 59.691 45.455 11.71 0.00 34.61 2.71
492 495 1.839424 AAGGGCTTGCCTACAATGTC 58.161 50.000 11.71 0.00 34.61 3.06
493 496 0.034089 AGGGCTTGCCTACAATGTCC 60.034 55.000 11.71 0.00 34.61 4.02
494 497 0.034089 GGGCTTGCCTACAATGTCCT 60.034 55.000 11.71 0.00 34.61 3.85
495 498 1.616994 GGGCTTGCCTACAATGTCCTT 60.617 52.381 11.71 0.00 34.61 3.36
496 499 1.745653 GGCTTGCCTACAATGTCCTTC 59.254 52.381 4.11 0.00 34.61 3.46
497 500 1.398390 GCTTGCCTACAATGTCCTTCG 59.602 52.381 0.00 0.00 34.61 3.79
498 501 2.935238 GCTTGCCTACAATGTCCTTCGA 60.935 50.000 0.00 0.00 34.61 3.71
499 502 2.672961 TGCCTACAATGTCCTTCGAG 57.327 50.000 0.00 0.00 0.00 4.04
500 503 1.207089 TGCCTACAATGTCCTTCGAGG 59.793 52.381 0.00 0.00 36.46 4.63
501 504 1.480954 GCCTACAATGTCCTTCGAGGA 59.519 52.381 2.05 0.00 43.43 3.71
502 505 2.482142 GCCTACAATGTCCTTCGAGGAG 60.482 54.545 2.05 0.00 46.90 3.69
503 506 2.761208 CCTACAATGTCCTTCGAGGAGT 59.239 50.000 0.00 0.00 46.90 3.85
504 507 3.195825 CCTACAATGTCCTTCGAGGAGTT 59.804 47.826 0.00 0.00 46.90 3.01
505 508 3.320673 ACAATGTCCTTCGAGGAGTTC 57.679 47.619 0.00 0.00 46.90 3.01
506 509 2.632996 ACAATGTCCTTCGAGGAGTTCA 59.367 45.455 0.00 0.00 46.90 3.18
507 510 3.257393 CAATGTCCTTCGAGGAGTTCAG 58.743 50.000 0.00 0.00 46.90 3.02
508 511 1.257743 TGTCCTTCGAGGAGTTCAGG 58.742 55.000 0.00 0.00 46.90 3.86
509 512 1.258676 GTCCTTCGAGGAGTTCAGGT 58.741 55.000 0.00 0.00 46.90 4.00
510 513 1.202817 GTCCTTCGAGGAGTTCAGGTC 59.797 57.143 0.00 0.00 46.90 3.85
511 514 0.533032 CCTTCGAGGAGTTCAGGTCC 59.467 60.000 0.00 0.00 37.67 4.46
512 515 1.257743 CTTCGAGGAGTTCAGGTCCA 58.742 55.000 0.00 0.00 36.43 4.02
513 516 1.203523 CTTCGAGGAGTTCAGGTCCAG 59.796 57.143 0.00 0.00 36.43 3.86
514 517 0.112606 TCGAGGAGTTCAGGTCCAGT 59.887 55.000 0.00 0.00 36.43 4.00
515 518 0.528470 CGAGGAGTTCAGGTCCAGTC 59.472 60.000 0.00 0.00 36.43 3.51
516 519 1.888826 CGAGGAGTTCAGGTCCAGTCT 60.889 57.143 0.00 0.00 36.43 3.24
517 520 2.252714 GAGGAGTTCAGGTCCAGTCTT 58.747 52.381 0.00 0.00 36.43 3.01
518 521 2.635427 GAGGAGTTCAGGTCCAGTCTTT 59.365 50.000 0.00 0.00 36.43 2.52
519 522 2.370189 AGGAGTTCAGGTCCAGTCTTTG 59.630 50.000 0.00 0.00 36.43 2.77
520 523 2.147150 GAGTTCAGGTCCAGTCTTTGC 58.853 52.381 0.00 0.00 0.00 3.68
521 524 0.868406 GTTCAGGTCCAGTCTTTGCG 59.132 55.000 0.00 0.00 0.00 4.85
522 525 0.468226 TTCAGGTCCAGTCTTTGCGT 59.532 50.000 0.00 0.00 0.00 5.24
523 526 0.033504 TCAGGTCCAGTCTTTGCGTC 59.966 55.000 0.00 0.00 0.00 5.19
524 527 0.249868 CAGGTCCAGTCTTTGCGTCA 60.250 55.000 0.00 0.00 0.00 4.35
525 528 0.249911 AGGTCCAGTCTTTGCGTCAC 60.250 55.000 0.00 0.00 0.00 3.67
526 529 1.228657 GGTCCAGTCTTTGCGTCACC 61.229 60.000 0.00 0.00 0.00 4.02
527 530 0.531974 GTCCAGTCTTTGCGTCACCA 60.532 55.000 0.00 0.00 0.00 4.17
528 531 0.179234 TCCAGTCTTTGCGTCACCAA 59.821 50.000 0.00 0.00 0.00 3.67
529 532 1.202758 TCCAGTCTTTGCGTCACCAAT 60.203 47.619 0.00 0.00 0.00 3.16
530 533 1.069022 CCAGTCTTTGCGTCACCAATG 60.069 52.381 0.00 0.00 0.00 2.82
531 534 1.069022 CAGTCTTTGCGTCACCAATGG 60.069 52.381 0.00 0.00 0.00 3.16
532 535 0.387239 GTCTTTGCGTCACCAATGGC 60.387 55.000 0.00 0.00 0.00 4.40
540 543 4.481112 CACCAATGGCGCCGCTTC 62.481 66.667 23.90 0.00 0.00 3.86
581 584 5.578157 GGGGGTGTGGAGTATATGTATTT 57.422 43.478 0.00 0.00 0.00 1.40
582 585 5.948842 GGGGGTGTGGAGTATATGTATTTT 58.051 41.667 0.00 0.00 0.00 1.82
583 586 5.768164 GGGGGTGTGGAGTATATGTATTTTG 59.232 44.000 0.00 0.00 0.00 2.44
584 587 5.240844 GGGGTGTGGAGTATATGTATTTTGC 59.759 44.000 0.00 0.00 0.00 3.68
585 588 5.825679 GGGTGTGGAGTATATGTATTTTGCA 59.174 40.000 0.00 0.00 0.00 4.08
586 589 6.238648 GGGTGTGGAGTATATGTATTTTGCAC 60.239 42.308 0.00 0.00 0.00 4.57
587 590 6.418956 GTGTGGAGTATATGTATTTTGCACG 58.581 40.000 0.00 0.00 30.77 5.34
588 591 6.036735 GTGTGGAGTATATGTATTTTGCACGT 59.963 38.462 0.00 0.00 30.77 4.49
589 592 6.036626 TGTGGAGTATATGTATTTTGCACGTG 59.963 38.462 12.28 12.28 30.77 4.49
590 593 6.036735 GTGGAGTATATGTATTTTGCACGTGT 59.963 38.462 18.38 0.00 0.00 4.49
591 594 6.036626 TGGAGTATATGTATTTTGCACGTGTG 59.963 38.462 18.38 0.00 0.00 3.82
592 595 6.036735 GGAGTATATGTATTTTGCACGTGTGT 59.963 38.462 18.38 1.69 0.00 3.72
593 596 7.000575 AGTATATGTATTTTGCACGTGTGTC 57.999 36.000 18.38 0.49 0.00 3.67
594 597 5.871465 ATATGTATTTTGCACGTGTGTCA 57.129 34.783 18.38 3.59 0.00 3.58
595 598 3.326733 TGTATTTTGCACGTGTGTCAC 57.673 42.857 18.38 8.55 0.00 3.67
596 599 2.939756 TGTATTTTGCACGTGTGTCACT 59.060 40.909 18.38 0.83 31.34 3.41
597 600 3.375610 TGTATTTTGCACGTGTGTCACTT 59.624 39.130 18.38 0.00 31.34 3.16
598 601 2.254918 TTTTGCACGTGTGTCACTTG 57.745 45.000 18.38 2.93 36.82 3.16
599 602 1.160989 TTTGCACGTGTGTCACTTGT 58.839 45.000 18.38 0.00 36.27 3.16
600 603 2.011540 TTGCACGTGTGTCACTTGTA 57.988 45.000 18.38 1.70 36.27 2.41
601 604 1.282817 TGCACGTGTGTCACTTGTAC 58.717 50.000 18.38 0.00 36.27 2.90
602 605 1.134936 TGCACGTGTGTCACTTGTACT 60.135 47.619 18.38 0.00 36.27 2.73
603 606 2.099427 TGCACGTGTGTCACTTGTACTA 59.901 45.455 18.38 0.00 36.27 1.82
604 607 2.470257 GCACGTGTGTCACTTGTACTAC 59.530 50.000 18.38 0.00 36.27 2.73
605 608 3.697982 CACGTGTGTCACTTGTACTACA 58.302 45.455 7.58 0.00 30.59 2.74
606 609 4.106909 CACGTGTGTCACTTGTACTACAA 58.893 43.478 7.58 1.67 36.54 2.41
607 610 4.563580 CACGTGTGTCACTTGTACTACAAA 59.436 41.667 7.58 0.00 37.69 2.83
608 611 5.233476 CACGTGTGTCACTTGTACTACAAAT 59.767 40.000 7.58 0.00 37.69 2.32
609 612 5.461078 ACGTGTGTCACTTGTACTACAAATC 59.539 40.000 4.27 0.00 37.69 2.17
610 613 5.690409 CGTGTGTCACTTGTACTACAAATCT 59.310 40.000 4.27 0.00 37.69 2.40
611 614 6.200286 CGTGTGTCACTTGTACTACAAATCTT 59.800 38.462 4.27 0.00 37.69 2.40
612 615 7.254319 CGTGTGTCACTTGTACTACAAATCTTT 60.254 37.037 4.27 0.00 37.69 2.52
613 616 8.062448 GTGTGTCACTTGTACTACAAATCTTTC 58.938 37.037 4.27 0.00 37.69 2.62
614 617 7.985184 TGTGTCACTTGTACTACAAATCTTTCT 59.015 33.333 4.27 0.00 37.69 2.52
615 618 8.488764 GTGTCACTTGTACTACAAATCTTTCTC 58.511 37.037 3.26 0.00 37.69 2.87
616 619 7.656137 TGTCACTTGTACTACAAATCTTTCTCC 59.344 37.037 3.26 0.00 37.69 3.71
617 620 7.873505 GTCACTTGTACTACAAATCTTTCTCCT 59.126 37.037 3.26 0.00 37.69 3.69
618 621 8.429641 TCACTTGTACTACAAATCTTTCTCCTT 58.570 33.333 3.26 0.00 37.69 3.36
619 622 8.499162 CACTTGTACTACAAATCTTTCTCCTTG 58.501 37.037 3.26 0.00 37.69 3.61
620 623 7.661847 ACTTGTACTACAAATCTTTCTCCTTGG 59.338 37.037 3.26 0.00 37.69 3.61
621 624 6.472887 TGTACTACAAATCTTTCTCCTTGGG 58.527 40.000 0.00 0.00 0.00 4.12
622 625 5.584551 ACTACAAATCTTTCTCCTTGGGT 57.415 39.130 0.00 0.00 0.00 4.51
623 626 6.697641 ACTACAAATCTTTCTCCTTGGGTA 57.302 37.500 0.00 0.00 0.00 3.69
624 627 7.272144 ACTACAAATCTTTCTCCTTGGGTAT 57.728 36.000 0.00 0.00 0.00 2.73
625 628 8.388656 ACTACAAATCTTTCTCCTTGGGTATA 57.611 34.615 0.00 0.00 0.00 1.47
626 629 8.487028 ACTACAAATCTTTCTCCTTGGGTATAG 58.513 37.037 0.00 0.00 0.00 1.31
627 630 7.272144 ACAAATCTTTCTCCTTGGGTATAGT 57.728 36.000 0.00 0.00 0.00 2.12
628 631 7.699878 ACAAATCTTTCTCCTTGGGTATAGTT 58.300 34.615 0.00 0.00 0.00 2.24
629 632 7.611855 ACAAATCTTTCTCCTTGGGTATAGTTG 59.388 37.037 0.00 0.00 0.00 3.16
630 633 7.510675 AATCTTTCTCCTTGGGTATAGTTGA 57.489 36.000 0.00 0.00 0.00 3.18
631 634 6.546428 TCTTTCTCCTTGGGTATAGTTGAG 57.454 41.667 0.00 0.00 0.00 3.02
632 635 6.261435 TCTTTCTCCTTGGGTATAGTTGAGA 58.739 40.000 0.00 0.00 0.00 3.27
633 636 6.729100 TCTTTCTCCTTGGGTATAGTTGAGAA 59.271 38.462 0.00 0.00 36.05 2.87
634 637 7.403231 TCTTTCTCCTTGGGTATAGTTGAGAAT 59.597 37.037 0.00 0.00 37.27 2.40
635 638 8.618240 TTTCTCCTTGGGTATAGTTGAGAATA 57.382 34.615 0.00 0.00 37.27 1.75
636 639 7.598759 TCTCCTTGGGTATAGTTGAGAATAC 57.401 40.000 0.00 0.00 0.00 1.89
637 640 6.264744 TCTCCTTGGGTATAGTTGAGAATACG 59.735 42.308 0.00 0.00 30.74 3.06
638 641 5.303589 TCCTTGGGTATAGTTGAGAATACGG 59.696 44.000 0.00 0.00 30.74 4.02
639 642 5.070047 CCTTGGGTATAGTTGAGAATACGGT 59.930 44.000 0.00 0.00 30.74 4.83
640 643 6.407752 CCTTGGGTATAGTTGAGAATACGGTT 60.408 42.308 0.00 0.00 30.74 4.44
641 644 7.201938 CCTTGGGTATAGTTGAGAATACGGTTA 60.202 40.741 0.00 0.00 30.74 2.85
642 645 7.042797 TGGGTATAGTTGAGAATACGGTTAC 57.957 40.000 0.00 0.00 30.74 2.50
643 646 6.040842 TGGGTATAGTTGAGAATACGGTTACC 59.959 42.308 0.00 0.00 30.74 2.85
644 647 6.450545 GGTATAGTTGAGAATACGGTTACCC 58.549 44.000 0.00 0.00 30.74 3.69
645 648 3.900966 AGTTGAGAATACGGTTACCCC 57.099 47.619 0.00 0.00 0.00 4.95
646 649 3.447950 AGTTGAGAATACGGTTACCCCT 58.552 45.455 0.00 0.00 0.00 4.79
647 650 3.842436 AGTTGAGAATACGGTTACCCCTT 59.158 43.478 0.00 0.00 0.00 3.95
648 651 3.899052 TGAGAATACGGTTACCCCTTG 57.101 47.619 0.00 0.00 0.00 3.61
649 652 3.175594 TGAGAATACGGTTACCCCTTGT 58.824 45.455 0.00 0.00 0.00 3.16
650 653 4.352009 TGAGAATACGGTTACCCCTTGTA 58.648 43.478 0.00 0.00 0.00 2.41
651 654 4.160252 TGAGAATACGGTTACCCCTTGTAC 59.840 45.833 0.00 0.00 0.00 2.90
652 655 4.356436 AGAATACGGTTACCCCTTGTACT 58.644 43.478 0.00 0.00 0.00 2.73
653 656 5.518865 AGAATACGGTTACCCCTTGTACTA 58.481 41.667 0.00 0.00 0.00 1.82
654 657 5.957774 AGAATACGGTTACCCCTTGTACTAA 59.042 40.000 0.00 0.00 0.00 2.24
655 658 6.440328 AGAATACGGTTACCCCTTGTACTAAA 59.560 38.462 0.00 0.00 0.00 1.85
656 659 6.813293 ATACGGTTACCCCTTGTACTAAAT 57.187 37.500 0.00 0.00 0.00 1.40
657 660 7.912778 ATACGGTTACCCCTTGTACTAAATA 57.087 36.000 0.00 0.00 0.00 1.40
658 661 6.813293 ACGGTTACCCCTTGTACTAAATAT 57.187 37.500 0.00 0.00 0.00 1.28
659 662 7.912778 ACGGTTACCCCTTGTACTAAATATA 57.087 36.000 0.00 0.00 0.00 0.86
660 663 8.496534 ACGGTTACCCCTTGTACTAAATATAT 57.503 34.615 0.00 0.00 0.00 0.86
661 664 9.600432 ACGGTTACCCCTTGTACTAAATATATA 57.400 33.333 0.00 0.00 0.00 0.86
683 686 9.925545 ATATATGTACATATGCACCCAATGAAT 57.074 29.630 30.35 13.66 35.71 2.57
685 688 9.925545 ATATGTACATATGCACCCAATGAATAT 57.074 29.630 24.39 0.00 39.85 1.28
686 689 8.654485 ATGTACATATGCACCCAATGAATATT 57.346 30.769 6.56 0.00 37.43 1.28
687 690 7.884257 TGTACATATGCACCCAATGAATATTG 58.116 34.615 1.58 0.00 37.43 1.90
688 691 7.723172 TGTACATATGCACCCAATGAATATTGA 59.277 33.333 1.58 0.00 45.21 2.57
689 692 7.223260 ACATATGCACCCAATGAATATTGAG 57.777 36.000 1.58 0.00 45.21 3.02
690 693 7.005902 ACATATGCACCCAATGAATATTGAGA 58.994 34.615 1.58 0.00 45.21 3.27
691 694 7.176165 ACATATGCACCCAATGAATATTGAGAG 59.824 37.037 1.58 0.00 45.21 3.20
692 695 3.633525 TGCACCCAATGAATATTGAGAGC 59.366 43.478 0.00 0.23 45.21 4.09
693 696 3.887716 GCACCCAATGAATATTGAGAGCT 59.112 43.478 0.00 0.00 45.21 4.09
694 697 4.261489 GCACCCAATGAATATTGAGAGCTG 60.261 45.833 0.00 0.00 45.21 4.24
695 698 3.887716 ACCCAATGAATATTGAGAGCTGC 59.112 43.478 0.00 0.00 45.21 5.25
696 699 3.887110 CCCAATGAATATTGAGAGCTGCA 59.113 43.478 1.02 0.00 45.21 4.41
697 700 4.523173 CCCAATGAATATTGAGAGCTGCAT 59.477 41.667 1.02 0.00 45.21 3.96
698 701 5.708697 CCCAATGAATATTGAGAGCTGCATA 59.291 40.000 1.02 0.00 45.21 3.14
699 702 6.208007 CCCAATGAATATTGAGAGCTGCATAA 59.792 38.462 1.02 0.00 45.21 1.90
700 703 7.093902 CCCAATGAATATTGAGAGCTGCATAAT 60.094 37.037 1.02 0.00 45.21 1.28
701 704 8.304596 CCAATGAATATTGAGAGCTGCATAATT 58.695 33.333 1.02 0.00 45.21 1.40
702 705 9.129209 CAATGAATATTGAGAGCTGCATAATTG 57.871 33.333 1.02 0.00 45.21 2.32
703 706 7.812690 TGAATATTGAGAGCTGCATAATTGT 57.187 32.000 1.02 0.00 0.00 2.71
704 707 8.907222 TGAATATTGAGAGCTGCATAATTGTA 57.093 30.769 1.02 0.00 0.00 2.41
705 708 8.777413 TGAATATTGAGAGCTGCATAATTGTAC 58.223 33.333 1.02 0.00 0.00 2.90
706 709 8.915057 AATATTGAGAGCTGCATAATTGTACT 57.085 30.769 1.02 0.00 0.00 2.73
753 756 5.240844 CCAATGAATATTGAGAGCTGCATCA 59.759 40.000 1.02 2.65 45.21 3.07
757 760 8.809468 ATGAATATTGAGAGCTGCATCATATT 57.191 30.769 1.02 10.84 0.00 1.28
764 767 8.768957 TTGAGAGCTGCATCATATTATTCTAC 57.231 34.615 1.02 0.00 0.00 2.59
823 826 0.766674 AACAGTGACACAGCCCCCTA 60.767 55.000 8.59 0.00 0.00 3.53
830 833 2.285442 ACAGCCCCCTACCCACTC 60.285 66.667 0.00 0.00 0.00 3.51
831 834 3.470888 CAGCCCCCTACCCACTCG 61.471 72.222 0.00 0.00 0.00 4.18
832 835 4.007323 AGCCCCCTACCCACTCGT 62.007 66.667 0.00 0.00 0.00 4.18
833 836 3.007323 GCCCCCTACCCACTCGTT 61.007 66.667 0.00 0.00 0.00 3.85
834 837 2.599757 GCCCCCTACCCACTCGTTT 61.600 63.158 0.00 0.00 0.00 3.60
883 886 0.233848 CGTAGCAACGGTTTGGACAC 59.766 55.000 0.00 0.00 45.50 3.67
943 950 2.184322 CCCCGTCTCCACATGTCG 59.816 66.667 0.00 0.00 0.00 4.35
1216 1224 4.399395 CGGAGAAGGGCTGCTGCA 62.399 66.667 17.89 0.88 41.91 4.41
1484 1492 7.512297 CAATAAATGCTTCTTTTCAAACGCAT 58.488 30.769 0.00 0.00 39.53 4.73
1510 1519 4.362932 TCGTTTCTTTGCAATGTTGTCA 57.637 36.364 11.67 0.00 0.00 3.58
1561 1570 8.098286 TGATGAATGGCAAAAGAATTTCTGATT 58.902 29.630 0.00 0.00 37.28 2.57
1587 1596 2.525096 CGTCTCGTGCGTAATTAGACAC 59.475 50.000 10.31 7.45 37.09 3.67
1645 1654 8.661352 TGTTCAGATCAATTATCGAATTAGCA 57.339 30.769 0.00 0.00 39.79 3.49
1647 1656 9.752274 GTTCAGATCAATTATCGAATTAGCATC 57.248 33.333 0.00 0.00 39.79 3.91
1648 1657 9.492973 TTCAGATCAATTATCGAATTAGCATCA 57.507 29.630 0.00 0.00 39.79 3.07
1663 1672 6.732531 TTAGCATCACAATATATCTGCTGC 57.267 37.500 5.18 9.58 40.01 5.25
1781 1795 6.459298 CGTGGTTTACAAGTATCTACCGATCT 60.459 42.308 0.00 0.00 0.00 2.75
2132 2162 6.798427 ATCACACCATAGACATGAAGTACT 57.202 37.500 0.00 0.00 33.67 2.73
2311 2341 3.492482 CGCAAAACCTCCTGTGGATTTTT 60.492 43.478 0.00 0.00 31.12 1.94
2375 2406 5.930135 ACTGACAAGTGTAGAATTGGAACT 58.070 37.500 5.01 0.00 34.48 3.01
2534 2565 4.576330 AGGTTAAGTATTGCAAGGCTCT 57.424 40.909 4.94 0.00 0.00 4.09
2535 2566 4.518249 AGGTTAAGTATTGCAAGGCTCTC 58.482 43.478 4.94 0.60 0.00 3.20
2680 2713 4.768968 AGCCAAGAGTTCAGTTGCATATTT 59.231 37.500 0.00 0.00 0.00 1.40
2690 2724 7.986889 AGTTCAGTTGCATATTTTTCCTGTTTT 59.013 29.630 0.00 0.00 0.00 2.43
3213 3247 6.545504 AATCAATACCATAACGCTGCTTAG 57.454 37.500 0.00 0.00 0.00 2.18
3574 3614 1.446792 CGCTGGTTGCAGACGATCT 60.447 57.895 0.00 0.00 43.06 2.75
3914 3972 2.501223 AATCTTCCTCGAACGCCGCA 62.501 55.000 0.00 0.00 38.37 5.69
4383 4450 6.824305 AATCTGGTTTTGTTCCATACAGAG 57.176 37.500 0.00 0.00 38.19 3.35
4460 4527 1.069636 GTGGCAGTGAGAAAAGCTTCG 60.070 52.381 0.00 0.00 36.61 3.79
4552 4619 1.444836 CGTTCAGCCGACCCATTTTA 58.555 50.000 0.00 0.00 0.00 1.52
4991 5060 4.901849 TGAACTATAACTGAGGAGGGATGG 59.098 45.833 0.00 0.00 0.00 3.51
5555 5778 1.122632 TTTGGCACTCCGGGTAGTCA 61.123 55.000 0.00 0.00 34.14 3.41
6042 6274 2.362077 AGATTTGTTATGCGGGATTGCC 59.638 45.455 0.00 0.00 0.00 4.52
6444 6677 2.363788 TTGTGGTGTCGCTAGATGAC 57.636 50.000 8.23 8.23 36.88 3.06
6477 6710 4.058817 GTGGCTCTGTATACCATGTAAGC 58.941 47.826 0.00 0.81 35.53 3.09
6725 6993 5.979288 AGAGTAAAGTACACTGTACCAGG 57.021 43.478 14.60 0.00 37.38 4.45
6760 7028 5.933790 TGAACGAAATACATGCCAAGTAAC 58.066 37.500 0.00 0.00 0.00 2.50
6763 7031 3.350912 GAAATACATGCCAAGTAACGCG 58.649 45.455 3.53 3.53 0.00 6.01
6764 7032 2.303163 ATACATGCCAAGTAACGCGA 57.697 45.000 15.93 0.00 0.00 5.87
6765 7033 1.635844 TACATGCCAAGTAACGCGAG 58.364 50.000 15.93 0.00 0.00 5.03
6825 7177 6.415206 ACTTGGTCAGTAGCTAAAACAGTA 57.585 37.500 0.00 0.00 31.97 2.74
6828 7180 5.779922 TGGTCAGTAGCTAAAACAGTACAG 58.220 41.667 0.00 0.00 0.00 2.74
6854 7206 4.021719 ACCAAATTGTCTCATGGAAGCAAG 60.022 41.667 0.00 0.00 36.75 4.01
6860 7212 2.161211 GTCTCATGGAAGCAAGCTGTTC 59.839 50.000 0.00 0.00 0.00 3.18
6861 7213 2.156917 CTCATGGAAGCAAGCTGTTCA 58.843 47.619 0.00 0.00 0.00 3.18
6873 7225 4.293415 CAAGCTGTTCAGTTCAAACCATC 58.707 43.478 0.00 0.00 0.00 3.51
6908 7260 7.914427 TTCCATACTCCTATCACAACATAGT 57.086 36.000 0.00 0.00 0.00 2.12
6911 7263 8.225416 TCCATACTCCTATCACAACATAGTAGT 58.775 37.037 0.00 0.00 32.11 2.73
6912 7264 9.516546 CCATACTCCTATCACAACATAGTAGTA 57.483 37.037 0.00 0.00 34.23 1.82
6916 7268 9.122779 ACTCCTATCACAACATAGTAGTAGAAC 57.877 37.037 0.00 0.00 26.90 3.01
6917 7269 9.344772 CTCCTATCACAACATAGTAGTAGAACT 57.655 37.037 0.00 0.00 0.00 3.01
6918 7270 9.121658 TCCTATCACAACATAGTAGTAGAACTG 57.878 37.037 0.00 0.00 0.00 3.16
6919 7271 8.904834 CCTATCACAACATAGTAGTAGAACTGT 58.095 37.037 0.00 0.00 0.00 3.55
7121 7475 3.252284 CGGAGGCAGCCCCCATAT 61.252 66.667 13.43 0.00 0.00 1.78
7124 7478 2.038438 AGGCAGCCCCCATATCCA 60.038 61.111 8.22 0.00 0.00 3.41
7126 7480 1.000396 GGCAGCCCCCATATCCATC 60.000 63.158 0.00 0.00 0.00 3.51
7137 7491 2.616256 CCATATCCATCCCACATCGGTG 60.616 54.545 0.00 0.00 44.85 4.94
7185 7539 3.686241 TCAAATCGATTCAAGTCCAGCAG 59.314 43.478 11.83 0.00 0.00 4.24
7404 8845 2.459904 GCGTATGTATGTCGCGCG 59.540 61.111 26.76 26.76 40.51 6.86
7405 8846 2.983977 GCGTATGTATGTCGCGCGG 61.984 63.158 31.69 11.75 40.51 6.46
7431 8872 2.045926 GGGGCTGTGCTGTACCTG 60.046 66.667 0.00 0.00 0.00 4.00
7432 8873 2.750350 GGGCTGTGCTGTACCTGT 59.250 61.111 0.00 0.00 0.00 4.00
7433 8874 1.550130 GGGGCTGTGCTGTACCTGTA 61.550 60.000 0.00 0.00 0.00 2.74
7434 8875 0.391263 GGGCTGTGCTGTACCTGTAC 60.391 60.000 0.45 0.45 36.63 2.90
7435 8876 0.608640 GGCTGTGCTGTACCTGTACT 59.391 55.000 8.75 0.00 37.00 2.73
7481 8922 0.387929 TACCCCGCTCTTATTCGCTG 59.612 55.000 0.00 0.00 0.00 5.18
7706 10574 3.638627 TGCAAACACCCACATTTCACATA 59.361 39.130 0.00 0.00 0.00 2.29
7759 10628 5.850128 CAGAAAAGAGAAAACTGAATCTGCG 59.150 40.000 0.00 0.00 0.00 5.18
7803 11285 9.527157 CATACTCCCTCTATCCATATATACAGG 57.473 40.741 0.00 0.00 0.00 4.00
7805 11287 5.716979 TCCCTCTATCCATATATACAGGGC 58.283 45.833 0.00 0.00 39.49 5.19
7806 11288 5.440072 TCCCTCTATCCATATATACAGGGCT 59.560 44.000 0.00 0.00 39.49 5.19
7823 11305 3.572255 AGGGCTTAATGCGTTTTTCAAGA 59.428 39.130 0.00 0.00 44.05 3.02
7825 11307 3.673338 GGCTTAATGCGTTTTTCAAGACC 59.327 43.478 0.00 0.00 44.05 3.85
7828 11310 5.405269 GCTTAATGCGTTTTTCAAGACCAAT 59.595 36.000 0.00 0.00 0.00 3.16
7832 11314 7.778470 AATGCGTTTTTCAAGACCAATTTTA 57.222 28.000 0.00 0.00 0.00 1.52
7836 11318 6.036191 GCGTTTTTCAAGACCAATTTTAACCA 59.964 34.615 0.00 0.00 0.00 3.67
7844 11326 8.356657 TCAAGACCAATTTTAACCACATGTTAG 58.643 33.333 0.00 0.00 40.42 2.34
7851 11333 8.649841 CAATTTTAACCACATGTTAGAGCAATG 58.350 33.333 0.00 0.00 40.42 2.82
7881 11363 5.772825 ATGACATGCAAGTTACACAAAGT 57.227 34.783 0.00 0.00 0.00 2.66
7882 11364 4.919206 TGACATGCAAGTTACACAAAGTG 58.081 39.130 0.00 0.00 39.75 3.16
7890 11372 5.008217 GCAAGTTACACAAAGTGTACCATCA 59.992 40.000 9.33 0.00 46.71 3.07
7896 11378 5.757886 ACACAAAGTGTACCATCAAATTCG 58.242 37.500 0.15 0.00 45.56 3.34
7907 11389 9.438228 TGTACCATCAAATTCGTACTTTCAATA 57.562 29.630 0.00 0.00 33.73 1.90
7971 11453 6.994496 CCTATCAATACTCAAAGGCATTCTCA 59.006 38.462 0.00 0.00 0.00 3.27
7982 11464 7.315142 TCAAAGGCATTCTCAAATTACACATC 58.685 34.615 0.00 0.00 0.00 3.06
8003 11485 9.993454 CACATCAGGTCCTATATATATGAATGG 57.007 37.037 5.44 3.21 0.00 3.16
8036 11519 7.636259 TCAAATTTTGCAATAGAAAGGAACG 57.364 32.000 0.00 0.00 0.00 3.95
8066 11549 1.063070 TCCCCACTGCAACCCTACAA 61.063 55.000 0.00 0.00 0.00 2.41
8072 11555 1.350019 ACTGCAACCCTACAAGTACCC 59.650 52.381 0.00 0.00 0.00 3.69
8076 11559 2.178580 CAACCCTACAAGTACCCCGTA 58.821 52.381 0.00 0.00 0.00 4.02
8077 11560 1.852633 ACCCTACAAGTACCCCGTAC 58.147 55.000 0.00 0.00 39.10 3.67
8082 11565 0.539438 ACAAGTACCCCGTACCGTGA 60.539 55.000 9.15 0.00 39.58 4.35
8083 11566 0.602562 CAAGTACCCCGTACCGTGAA 59.397 55.000 0.00 0.00 39.58 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.374758 CAACGTGATGCCAAGATCCG 59.625 55.000 0.00 0.00 0.00 4.18
59 60 0.908910 TAGGCAATGATGTCGGTGGT 59.091 50.000 0.00 0.00 35.88 4.16
72 73 0.243907 GTCAGCGTCAGAGTAGGCAA 59.756 55.000 0.00 0.00 32.74 4.52
99 100 1.248785 ACGTCGTGTATCAGGGCAGT 61.249 55.000 0.00 0.00 0.00 4.40
138 139 2.532250 AAGTAATGGGCCAAGGAAGG 57.468 50.000 11.89 0.00 0.00 3.46
148 149 4.186159 ACGACCACGAAATAAGTAATGGG 58.814 43.478 0.00 0.00 42.66 4.00
153 154 4.487948 CTTGGACGACCACGAAATAAGTA 58.512 43.478 5.99 0.00 46.80 2.24
266 268 0.319900 GGACACGAGAGCTCAAGCAA 60.320 55.000 17.77 0.00 45.16 3.91
268 270 0.735632 CAGGACACGAGAGCTCAAGC 60.736 60.000 17.77 3.77 42.49 4.01
302 304 3.530265 AACGTTGTCACAGTAGACCAA 57.470 42.857 0.00 0.00 37.73 3.67
322 324 3.760035 GAGAGGCAGACGGCGGAA 61.760 66.667 13.24 0.00 46.16 4.30
424 427 0.604578 TGGGTACGCTTAGGACACAC 59.395 55.000 11.59 0.00 43.56 3.82
434 437 2.203877 TTGGGAGGTGGGTACGCT 60.204 61.111 11.59 0.00 0.00 5.07
486 489 3.257393 CTGAACTCCTCGAAGGACATTG 58.743 50.000 0.11 0.00 40.06 2.82
487 490 2.234908 CCTGAACTCCTCGAAGGACATT 59.765 50.000 0.11 0.00 40.06 2.71
488 491 1.827969 CCTGAACTCCTCGAAGGACAT 59.172 52.381 0.11 0.00 40.06 3.06
489 492 1.257743 CCTGAACTCCTCGAAGGACA 58.742 55.000 0.11 0.00 40.06 4.02
490 493 1.202817 GACCTGAACTCCTCGAAGGAC 59.797 57.143 4.10 0.00 40.06 3.85
491 494 1.546961 GACCTGAACTCCTCGAAGGA 58.453 55.000 4.10 4.03 43.43 3.36
492 495 0.533032 GGACCTGAACTCCTCGAAGG 59.467 60.000 0.00 0.00 36.46 3.46
493 496 1.203523 CTGGACCTGAACTCCTCGAAG 59.796 57.143 0.00 0.00 0.00 3.79
494 497 1.257743 CTGGACCTGAACTCCTCGAA 58.742 55.000 0.00 0.00 0.00 3.71
495 498 0.112606 ACTGGACCTGAACTCCTCGA 59.887 55.000 5.22 0.00 0.00 4.04
496 499 0.528470 GACTGGACCTGAACTCCTCG 59.472 60.000 5.22 0.00 0.00 4.63
497 500 1.931635 AGACTGGACCTGAACTCCTC 58.068 55.000 5.22 0.00 0.00 3.71
498 501 2.370189 CAAAGACTGGACCTGAACTCCT 59.630 50.000 5.22 0.00 0.00 3.69
499 502 2.772287 CAAAGACTGGACCTGAACTCC 58.228 52.381 5.22 0.00 0.00 3.85
500 503 2.147150 GCAAAGACTGGACCTGAACTC 58.853 52.381 5.22 0.00 0.00 3.01
501 504 1.541233 CGCAAAGACTGGACCTGAACT 60.541 52.381 5.22 1.71 0.00 3.01
502 505 0.868406 CGCAAAGACTGGACCTGAAC 59.132 55.000 5.22 0.00 0.00 3.18
503 506 0.468226 ACGCAAAGACTGGACCTGAA 59.532 50.000 5.22 0.00 0.00 3.02
504 507 0.033504 GACGCAAAGACTGGACCTGA 59.966 55.000 5.22 0.00 0.00 3.86
505 508 0.249868 TGACGCAAAGACTGGACCTG 60.250 55.000 0.00 0.00 0.00 4.00
506 509 0.249911 GTGACGCAAAGACTGGACCT 60.250 55.000 0.00 0.00 0.00 3.85
507 510 1.228657 GGTGACGCAAAGACTGGACC 61.229 60.000 0.00 0.00 0.00 4.46
508 511 0.531974 TGGTGACGCAAAGACTGGAC 60.532 55.000 0.00 0.00 0.00 4.02
509 512 0.179234 TTGGTGACGCAAAGACTGGA 59.821 50.000 0.00 0.00 0.00 3.86
510 513 1.069022 CATTGGTGACGCAAAGACTGG 60.069 52.381 0.00 0.00 0.00 4.00
511 514 1.069022 CCATTGGTGACGCAAAGACTG 60.069 52.381 0.00 0.00 0.00 3.51
512 515 1.238439 CCATTGGTGACGCAAAGACT 58.762 50.000 0.00 0.00 0.00 3.24
513 516 0.387239 GCCATTGGTGACGCAAAGAC 60.387 55.000 4.26 0.00 0.00 3.01
514 517 1.851021 CGCCATTGGTGACGCAAAGA 61.851 55.000 10.90 0.00 34.74 2.52
515 518 1.442520 CGCCATTGGTGACGCAAAG 60.443 57.895 10.90 0.00 34.74 2.77
516 519 2.642129 CGCCATTGGTGACGCAAA 59.358 55.556 10.90 0.00 34.74 3.68
523 526 4.481112 GAAGCGGCGCCATTGGTG 62.481 66.667 30.40 12.04 36.10 4.17
559 562 5.578157 AAATACATATACTCCACACCCCC 57.422 43.478 0.00 0.00 0.00 5.40
560 563 5.240844 GCAAAATACATATACTCCACACCCC 59.759 44.000 0.00 0.00 0.00 4.95
561 564 5.825679 TGCAAAATACATATACTCCACACCC 59.174 40.000 0.00 0.00 0.00 4.61
562 565 6.511121 CGTGCAAAATACATATACTCCACACC 60.511 42.308 0.00 0.00 0.00 4.16
563 566 6.036735 ACGTGCAAAATACATATACTCCACAC 59.963 38.462 0.00 0.00 0.00 3.82
564 567 6.036626 CACGTGCAAAATACATATACTCCACA 59.963 38.462 0.82 0.00 0.00 4.17
565 568 6.036735 ACACGTGCAAAATACATATACTCCAC 59.963 38.462 17.22 0.00 0.00 4.02
566 569 6.036626 CACACGTGCAAAATACATATACTCCA 59.963 38.462 17.22 0.00 0.00 3.86
567 570 6.036735 ACACACGTGCAAAATACATATACTCC 59.963 38.462 17.22 0.00 0.00 3.85
568 571 7.000575 ACACACGTGCAAAATACATATACTC 57.999 36.000 17.22 0.00 0.00 2.59
569 572 6.592220 TGACACACGTGCAAAATACATATACT 59.408 34.615 17.22 0.00 0.00 2.12
570 573 6.681178 GTGACACACGTGCAAAATACATATAC 59.319 38.462 17.22 0.00 0.00 1.47
571 574 6.592220 AGTGACACACGTGCAAAATACATATA 59.408 34.615 17.22 0.00 39.64 0.86
572 575 5.411361 AGTGACACACGTGCAAAATACATAT 59.589 36.000 17.22 0.00 39.64 1.78
573 576 4.752604 AGTGACACACGTGCAAAATACATA 59.247 37.500 17.22 0.00 39.64 2.29
574 577 3.563808 AGTGACACACGTGCAAAATACAT 59.436 39.130 17.22 0.00 39.64 2.29
575 578 2.939756 AGTGACACACGTGCAAAATACA 59.060 40.909 17.22 3.88 39.64 2.29
576 579 3.602390 AGTGACACACGTGCAAAATAC 57.398 42.857 17.22 7.75 39.64 1.89
577 580 3.375610 ACAAGTGACACACGTGCAAAATA 59.624 39.130 17.22 0.00 45.03 1.40
578 581 2.163412 ACAAGTGACACACGTGCAAAAT 59.837 40.909 17.22 0.00 45.03 1.82
579 582 1.537638 ACAAGTGACACACGTGCAAAA 59.462 42.857 17.22 0.00 45.03 2.44
580 583 1.160989 ACAAGTGACACACGTGCAAA 58.839 45.000 17.22 0.00 45.03 3.68
581 584 1.661617 GTACAAGTGACACACGTGCAA 59.338 47.619 17.22 0.00 45.03 4.08
582 585 1.134936 AGTACAAGTGACACACGTGCA 60.135 47.619 17.22 2.33 45.03 4.57
583 586 1.567504 AGTACAAGTGACACACGTGC 58.432 50.000 17.22 7.76 45.03 5.34
584 587 3.697982 TGTAGTACAAGTGACACACGTG 58.302 45.455 15.48 15.48 46.18 4.49
585 588 4.374843 TTGTAGTACAAGTGACACACGT 57.625 40.909 11.75 6.74 39.64 4.49
586 589 5.690409 AGATTTGTAGTACAAGTGACACACG 59.310 40.000 15.03 0.31 39.53 4.49
587 590 7.478520 AAGATTTGTAGTACAAGTGACACAC 57.521 36.000 15.03 1.04 39.53 3.82
588 591 7.985184 AGAAAGATTTGTAGTACAAGTGACACA 59.015 33.333 15.03 0.15 39.53 3.72
589 592 8.366671 AGAAAGATTTGTAGTACAAGTGACAC 57.633 34.615 15.03 0.00 39.53 3.67
590 593 7.656137 GGAGAAAGATTTGTAGTACAAGTGACA 59.344 37.037 15.03 1.56 39.53 3.58
591 594 7.873505 AGGAGAAAGATTTGTAGTACAAGTGAC 59.126 37.037 15.03 8.63 39.53 3.67
592 595 7.963532 AGGAGAAAGATTTGTAGTACAAGTGA 58.036 34.615 15.03 2.28 39.53 3.41
593 596 8.499162 CAAGGAGAAAGATTTGTAGTACAAGTG 58.501 37.037 15.03 0.00 39.53 3.16
594 597 7.661847 CCAAGGAGAAAGATTTGTAGTACAAGT 59.338 37.037 15.06 12.82 39.53 3.16
595 598 7.119846 CCCAAGGAGAAAGATTTGTAGTACAAG 59.880 40.741 15.06 0.40 39.53 3.16
596 599 6.940298 CCCAAGGAGAAAGATTTGTAGTACAA 59.060 38.462 11.75 11.75 36.11 2.41
597 600 6.043938 ACCCAAGGAGAAAGATTTGTAGTACA 59.956 38.462 0.00 0.00 0.00 2.90
598 601 6.473758 ACCCAAGGAGAAAGATTTGTAGTAC 58.526 40.000 0.00 0.00 0.00 2.73
599 602 6.697641 ACCCAAGGAGAAAGATTTGTAGTA 57.302 37.500 0.00 0.00 0.00 1.82
600 603 5.584551 ACCCAAGGAGAAAGATTTGTAGT 57.415 39.130 0.00 0.00 0.00 2.73
601 604 8.487028 ACTATACCCAAGGAGAAAGATTTGTAG 58.513 37.037 0.00 0.00 0.00 2.74
602 605 8.388656 ACTATACCCAAGGAGAAAGATTTGTA 57.611 34.615 0.00 0.00 0.00 2.41
603 606 7.272144 ACTATACCCAAGGAGAAAGATTTGT 57.728 36.000 0.00 0.00 0.00 2.83
604 607 7.829211 TCAACTATACCCAAGGAGAAAGATTTG 59.171 37.037 0.00 0.00 0.00 2.32
605 608 7.928873 TCAACTATACCCAAGGAGAAAGATTT 58.071 34.615 0.00 0.00 0.00 2.17
606 609 7.403231 TCTCAACTATACCCAAGGAGAAAGATT 59.597 37.037 0.00 0.00 0.00 2.40
607 610 6.903534 TCTCAACTATACCCAAGGAGAAAGAT 59.096 38.462 0.00 0.00 0.00 2.40
608 611 6.261435 TCTCAACTATACCCAAGGAGAAAGA 58.739 40.000 0.00 0.00 0.00 2.52
609 612 6.546428 TCTCAACTATACCCAAGGAGAAAG 57.454 41.667 0.00 0.00 0.00 2.62
610 613 6.945636 TTCTCAACTATACCCAAGGAGAAA 57.054 37.500 0.00 0.00 37.08 2.52
611 614 7.201884 CGTATTCTCAACTATACCCAAGGAGAA 60.202 40.741 0.00 0.00 42.15 2.87
612 615 6.264744 CGTATTCTCAACTATACCCAAGGAGA 59.735 42.308 0.00 0.00 0.00 3.71
613 616 6.448006 CGTATTCTCAACTATACCCAAGGAG 58.552 44.000 0.00 0.00 0.00 3.69
614 617 5.303589 CCGTATTCTCAACTATACCCAAGGA 59.696 44.000 0.00 0.00 0.00 3.36
615 618 5.070047 ACCGTATTCTCAACTATACCCAAGG 59.930 44.000 0.00 0.00 0.00 3.61
616 619 6.158023 ACCGTATTCTCAACTATACCCAAG 57.842 41.667 0.00 0.00 0.00 3.61
617 620 6.549433 AACCGTATTCTCAACTATACCCAA 57.451 37.500 0.00 0.00 0.00 4.12
618 621 6.040842 GGTAACCGTATTCTCAACTATACCCA 59.959 42.308 0.00 0.00 0.00 4.51
619 622 6.450545 GGTAACCGTATTCTCAACTATACCC 58.549 44.000 0.00 0.00 0.00 3.69
657 660 9.925545 ATTCATTGGGTGCATATGTACATATAT 57.074 29.630 24.50 12.19 33.01 0.86
659 662 9.925545 ATATTCATTGGGTGCATATGTACATAT 57.074 29.630 23.01 20.49 34.50 1.78
660 663 9.752228 AATATTCATTGGGTGCATATGTACATA 57.248 29.630 23.01 17.65 28.93 2.29
661 664 8.525316 CAATATTCATTGGGTGCATATGTACAT 58.475 33.333 23.01 13.93 38.31 2.29
662 665 7.723172 TCAATATTCATTGGGTGCATATGTACA 59.277 33.333 23.01 0.00 41.66 2.90
663 666 8.109705 TCAATATTCATTGGGTGCATATGTAC 57.890 34.615 14.90 14.90 41.66 2.90
664 667 8.162746 TCTCAATATTCATTGGGTGCATATGTA 58.837 33.333 4.29 0.00 42.41 2.29
665 668 7.005902 TCTCAATATTCATTGGGTGCATATGT 58.994 34.615 4.29 0.00 42.41 2.29
666 669 7.457024 TCTCAATATTCATTGGGTGCATATG 57.543 36.000 0.00 0.00 42.41 1.78
667 670 7.698506 CTCTCAATATTCATTGGGTGCATAT 57.301 36.000 0.00 0.00 42.41 1.78
672 675 4.261489 GCAGCTCTCAATATTCATTGGGTG 60.261 45.833 0.00 0.00 42.41 4.61
673 676 3.887716 GCAGCTCTCAATATTCATTGGGT 59.112 43.478 0.00 0.00 42.41 4.51
674 677 3.887110 TGCAGCTCTCAATATTCATTGGG 59.113 43.478 0.00 0.00 43.06 4.12
675 678 5.707242 ATGCAGCTCTCAATATTCATTGG 57.293 39.130 0.00 0.00 41.66 3.16
676 679 9.129209 CAATTATGCAGCTCTCAATATTCATTG 57.871 33.333 0.00 0.00 42.55 2.82
677 680 8.857098 ACAATTATGCAGCTCTCAATATTCATT 58.143 29.630 0.00 0.00 0.00 2.57
678 681 8.405418 ACAATTATGCAGCTCTCAATATTCAT 57.595 30.769 0.00 0.00 0.00 2.57
679 682 7.812690 ACAATTATGCAGCTCTCAATATTCA 57.187 32.000 0.00 0.00 0.00 2.57
680 683 8.997323 AGTACAATTATGCAGCTCTCAATATTC 58.003 33.333 0.00 0.00 0.00 1.75
681 684 8.915057 AGTACAATTATGCAGCTCTCAATATT 57.085 30.769 0.00 0.00 0.00 1.28
683 686 9.830975 TTTAGTACAATTATGCAGCTCTCAATA 57.169 29.630 0.00 0.00 0.00 1.90
684 687 8.737168 TTTAGTACAATTATGCAGCTCTCAAT 57.263 30.769 0.00 0.00 0.00 2.57
685 688 8.737168 ATTTAGTACAATTATGCAGCTCTCAA 57.263 30.769 0.00 0.00 0.00 3.02
714 717 9.752228 AATATTCATTGGGTGCATATGTACATA 57.248 29.630 23.01 17.65 28.93 2.29
719 722 7.005902 TCTCAATATTCATTGGGTGCATATGT 58.994 34.615 4.29 0.00 42.41 2.29
728 731 3.887110 TGCAGCTCTCAATATTCATTGGG 59.113 43.478 0.00 0.00 43.06 4.12
837 840 3.670625 CCGAGTGGGTACATCTCAAAAA 58.329 45.455 0.00 0.00 0.00 1.94
838 841 3.328382 CCGAGTGGGTACATCTCAAAA 57.672 47.619 0.00 0.00 0.00 2.44
850 853 1.012486 GCTACGAACAACCGAGTGGG 61.012 60.000 0.00 0.00 40.75 4.61
851 854 0.319211 TGCTACGAACAACCGAGTGG 60.319 55.000 0.00 0.00 42.84 4.00
852 855 1.191647 GTTGCTACGAACAACCGAGTG 59.808 52.381 8.19 0.00 41.22 3.51
853 856 1.494824 GTTGCTACGAACAACCGAGT 58.505 50.000 8.19 0.00 41.22 4.18
878 881 3.399181 TGAGCGATGGGGGTGTCC 61.399 66.667 0.00 0.00 0.00 4.02
879 882 2.125106 GTGAGCGATGGGGGTGTC 60.125 66.667 0.00 0.00 0.00 3.67
943 950 3.112709 GTCGGCCGTGCTCTGTTC 61.113 66.667 27.15 2.02 0.00 3.18
1437 1445 2.983136 CACGCTGCAGAGCATATACTAC 59.017 50.000 20.43 0.00 46.62 2.73
1438 1446 2.608016 GCACGCTGCAGAGCATATACTA 60.608 50.000 20.43 0.00 46.62 1.82
1439 1447 1.871408 GCACGCTGCAGAGCATATACT 60.871 52.381 20.43 0.00 46.62 2.12
1470 1478 4.915704 ACGAAAAGATGCGTTTGAAAAGA 58.084 34.783 0.00 0.00 37.48 2.52
1480 1488 3.042189 TGCAAAGAAACGAAAAGATGCG 58.958 40.909 0.00 0.00 35.40 4.73
1484 1492 5.866633 ACAACATTGCAAAGAAACGAAAAGA 59.133 32.000 8.96 0.00 0.00 2.52
1510 1519 3.853207 TCCTGTTTACACTACTGGGACT 58.147 45.455 0.00 0.00 35.86 3.85
1544 1553 6.606768 ACGAGAGAATCAGAAATTCTTTTGC 58.393 36.000 0.00 0.00 38.38 3.68
1561 1570 1.366679 ATTACGCACGAGACGAGAGA 58.633 50.000 0.00 0.00 0.00 3.10
1587 1596 4.771590 AATGTTGCAGTTGACATGGTAG 57.228 40.909 2.59 0.00 36.65 3.18
1634 1643 8.824781 GCAGATATATTGTGATGCTAATTCGAT 58.175 33.333 0.00 0.00 0.00 3.59
1645 1654 5.624344 GCAAGCAGCAGATATATTGTGAT 57.376 39.130 0.00 0.00 44.79 3.06
1663 1672 3.374745 CAAACCAAGCTTACAGTGCAAG 58.625 45.455 0.00 0.00 0.00 4.01
1668 1677 2.092103 TCCACCAAACCAAGCTTACAGT 60.092 45.455 0.00 0.00 0.00 3.55
1676 1685 0.744281 AACGCTTCCACCAAACCAAG 59.256 50.000 0.00 0.00 0.00 3.61
1781 1795 9.241919 CTATCTCTTATTCTGCTGAATCCTAGA 57.758 37.037 20.59 19.17 41.55 2.43
2132 2162 3.502979 GGAATTGGGTGTAAAGCAACGTA 59.497 43.478 0.00 0.00 35.08 3.57
2375 2406 7.406916 TGTAGGCTTGGGACTATATTTCAAAA 58.593 34.615 0.00 0.00 35.26 2.44
2680 2713 8.387813 AGGATGGTATAGTGTTAAAACAGGAAA 58.612 33.333 0.00 0.00 40.05 3.13
2690 2724 6.901300 AGAAGGTTCAGGATGGTATAGTGTTA 59.099 38.462 0.00 0.00 36.16 2.41
3117 3151 0.392461 GCTATTGCCGTGTCCAAGGA 60.392 55.000 3.30 0.00 31.21 3.36
3213 3247 3.363084 GCACGTCTTGTTGCTAAGAGTTC 60.363 47.826 0.00 0.00 37.36 3.01
3574 3614 2.439409 CAACACCTGATGCATCTCCAA 58.561 47.619 26.32 6.27 0.00 3.53
3914 3972 2.630580 AGAAGAAGAAGACGAAGCTGGT 59.369 45.455 0.00 0.00 0.00 4.00
4019 4077 1.420138 GGAACCAGTTCTTGTCTCCCA 59.580 52.381 10.19 0.00 39.45 4.37
4383 4450 4.871933 AATTTGAAAGTCCCATCACACC 57.128 40.909 0.00 0.00 0.00 4.16
4460 4527 5.555966 TCCATGCCTTTAAAATTTTGGGAC 58.444 37.500 13.76 9.22 0.00 4.46
4552 4619 1.866483 TTGCCCCCATGCTCATCAGT 61.866 55.000 0.00 0.00 0.00 3.41
4991 5060 1.589196 GTGGCATAGTCGTCTCGGC 60.589 63.158 0.00 0.00 0.00 5.54
5268 5338 8.487028 TGTTGGTAAATCAATTGTTAAAACCCT 58.513 29.630 5.13 0.00 0.00 4.34
5555 5778 0.466922 AGCAGCAGCAACAAGAAGGT 60.467 50.000 3.17 0.00 45.49 3.50
6042 6274 2.580470 CTCTATTCGCCGCGCAGTG 61.580 63.158 8.75 1.95 38.04 3.66
6151 6383 1.347707 TGTCGAAGGATCAGCAGGTTT 59.652 47.619 0.00 0.00 0.00 3.27
6444 6677 0.108898 CAGAGCCACGTCTCTTCCTG 60.109 60.000 4.12 0.00 41.22 3.86
6477 6710 0.744281 AACGCTTCCACCAAACCAAG 59.256 50.000 0.00 0.00 0.00 3.61
6742 7010 3.062909 TCGCGTTACTTGGCATGTATTTC 59.937 43.478 13.26 7.23 0.00 2.17
6760 7028 2.466571 GGTCGATGTTACAATACTCGCG 59.533 50.000 0.00 0.00 0.00 5.87
6763 7031 5.647589 TGTCTGGTCGATGTTACAATACTC 58.352 41.667 0.00 0.00 0.00 2.59
6764 7032 5.394224 CCTGTCTGGTCGATGTTACAATACT 60.394 44.000 0.00 0.00 0.00 2.12
6765 7033 4.804139 CCTGTCTGGTCGATGTTACAATAC 59.196 45.833 0.00 0.00 0.00 1.89
6807 7159 6.022163 TCCTGTACTGTTTTAGCTACTGAC 57.978 41.667 0.00 0.00 0.00 3.51
6815 7167 7.712797 ACAATTTGGTTCCTGTACTGTTTTAG 58.287 34.615 0.78 0.00 0.00 1.85
6825 7177 3.828451 CCATGAGACAATTTGGTTCCTGT 59.172 43.478 0.00 0.00 0.00 4.00
6828 7180 4.619160 GCTTCCATGAGACAATTTGGTTCC 60.619 45.833 0.00 0.00 0.00 3.62
6854 7206 4.574599 AAGATGGTTTGAACTGAACAGC 57.425 40.909 1.46 0.00 0.00 4.40
6860 7212 7.832503 AAAAACAGAAAGATGGTTTGAACTG 57.167 32.000 0.00 0.00 39.14 3.16
6886 7238 8.410673 ACTACTATGTTGTGATAGGAGTATGG 57.589 38.462 3.96 0.00 44.96 2.74
6897 7249 8.418662 ACAAACAGTTCTACTACTATGTTGTGA 58.581 33.333 0.00 0.00 30.65 3.58
6898 7250 8.589335 ACAAACAGTTCTACTACTATGTTGTG 57.411 34.615 0.00 0.00 30.65 3.33
6899 7251 9.688592 GTACAAACAGTTCTACTACTATGTTGT 57.311 33.333 0.00 0.00 33.65 3.32
6900 7252 9.909644 AGTACAAACAGTTCTACTACTATGTTG 57.090 33.333 0.00 0.00 0.00 3.33
6911 7263 8.875803 CACACTTTGTTAGTACAAACAGTTCTA 58.124 33.333 0.00 0.00 46.46 2.10
6912 7264 7.604927 TCACACTTTGTTAGTACAAACAGTTCT 59.395 33.333 0.00 0.00 46.46 3.01
6913 7265 7.745015 TCACACTTTGTTAGTACAAACAGTTC 58.255 34.615 0.00 0.00 46.46 3.01
6914 7266 7.675962 TCACACTTTGTTAGTACAAACAGTT 57.324 32.000 0.00 0.00 46.46 3.16
6916 7268 6.681178 CGTTCACACTTTGTTAGTACAAACAG 59.319 38.462 0.00 0.00 46.46 3.16
6917 7269 6.535811 CGTTCACACTTTGTTAGTACAAACA 58.464 36.000 0.00 0.00 46.46 2.83
6918 7270 5.450066 GCGTTCACACTTTGTTAGTACAAAC 59.550 40.000 0.00 0.00 46.46 2.93
7021 7375 2.851071 CGAGGAGGAGATGACGCCC 61.851 68.421 0.00 0.00 36.64 6.13
7118 7472 1.003580 GCACCGATGTGGGATGGATAT 59.996 52.381 0.00 0.00 44.64 1.63
7121 7475 1.846712 TTGCACCGATGTGGGATGGA 61.847 55.000 0.00 0.00 44.64 3.41
7124 7478 0.677731 CAGTTGCACCGATGTGGGAT 60.678 55.000 0.00 0.00 44.64 3.85
7126 7480 0.321210 TACAGTTGCACCGATGTGGG 60.321 55.000 0.00 0.00 44.64 4.61
7137 7491 1.201769 CGCGTGTACATGTACAGTTGC 60.202 52.381 33.58 31.38 45.61 4.17
7185 7539 0.801067 GTGTACACGGACCGATGCTC 60.801 60.000 23.38 8.89 0.00 4.26
7366 8807 9.826574 ATACGCTACCTTTAATAATCACTTTCA 57.173 29.630 0.00 0.00 0.00 2.69
7368 8809 9.609346 ACATACGCTACCTTTAATAATCACTTT 57.391 29.630 0.00 0.00 0.00 2.66
7374 8815 9.350357 CGACATACATACGCTACCTTTAATAAT 57.650 33.333 0.00 0.00 0.00 1.28
7375 8816 8.732413 CGACATACATACGCTACCTTTAATAA 57.268 34.615 0.00 0.00 0.00 1.40
7754 10623 1.592081 GTTTGCATTTTTGCACGCAGA 59.408 42.857 0.00 0.00 45.32 4.26
7759 10628 6.089417 GGAGTATGTAGTTTGCATTTTTGCAC 59.911 38.462 0.00 0.00 45.32 4.57
7800 11282 3.296322 TGAAAAACGCATTAAGCCCTG 57.704 42.857 0.00 0.00 41.38 4.45
7802 11284 3.673338 GTCTTGAAAAACGCATTAAGCCC 59.327 43.478 0.00 0.00 41.38 5.19
7803 11285 3.673338 GGTCTTGAAAAACGCATTAAGCC 59.327 43.478 0.00 0.00 41.38 4.35
7805 11287 7.406799 AATTGGTCTTGAAAAACGCATTAAG 57.593 32.000 0.00 0.00 0.00 1.85
7806 11288 7.778470 AAATTGGTCTTGAAAAACGCATTAA 57.222 28.000 0.00 0.00 0.00 1.40
7823 11305 6.266558 TGCTCTAACATGTGGTTAAAATTGGT 59.733 34.615 0.00 0.00 41.27 3.67
7825 11307 8.649841 CATTGCTCTAACATGTGGTTAAAATTG 58.350 33.333 0.00 0.00 41.27 2.32
7828 11310 7.517614 TCATTGCTCTAACATGTGGTTAAAA 57.482 32.000 0.00 0.00 41.27 1.52
7832 11314 6.418101 AGTATCATTGCTCTAACATGTGGTT 58.582 36.000 0.00 0.00 43.62 3.67
7844 11326 7.838771 TGCATGTCATATAGTATCATTGCTC 57.161 36.000 0.00 0.00 0.00 4.26
7851 11333 9.476202 TGTGTAACTTGCATGTCATATAGTATC 57.524 33.333 5.61 0.00 38.04 2.24
7964 11446 6.600822 AGGACCTGATGTGTAATTTGAGAATG 59.399 38.462 0.00 0.00 0.00 2.67
7982 11464 9.384849 TCCATCCATTCATATATATAGGACCTG 57.615 37.037 6.60 7.62 0.00 4.00
7999 11481 7.185318 TGCAAAATTTGATACTCCATCCATT 57.815 32.000 10.26 0.00 32.09 3.16
8036 11519 0.394899 CAGTGGGGAATGAGGCCTTC 60.395 60.000 6.77 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.