Multiple sequence alignment - TraesCS4B01G174700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G174700 chr4B 100.000 5918 0 0 1 5918 383094853 383100770 0.000000e+00 10929.0
1 TraesCS4B01G174700 chr4B 98.462 975 15 0 4939 5913 212948669 212949643 0.000000e+00 1718.0
2 TraesCS4B01G174700 chr4B 83.220 733 64 21 5219 5907 24218085 24218802 8.430000e-173 617.0
3 TraesCS4B01G174700 chr4D 97.771 1750 24 8 3151 4892 307148370 307150112 0.000000e+00 3001.0
4 TraesCS4B01G174700 chr4D 94.424 1668 49 13 687 2320 307145344 307147001 0.000000e+00 2525.0
5 TraesCS4B01G174700 chr4D 97.933 629 11 2 2317 2944 307147684 307148311 0.000000e+00 1088.0
6 TraesCS4B01G174700 chr4D 84.140 744 56 17 5219 5912 490165067 490164336 0.000000e+00 664.0
7 TraesCS4B01G174700 chr4D 83.987 637 44 15 1 604 307144510 307145121 5.180000e-155 558.0
8 TraesCS4B01G174700 chr4D 93.706 143 6 3 2929 3070 165913372 165913232 1.670000e-50 211.0
9 TraesCS4B01G174700 chr4D 95.000 60 3 0 3069 3128 307148310 307148369 1.760000e-15 95.3
10 TraesCS4B01G174700 chr4D 100.000 34 0 0 635 668 307145121 307145154 4.950000e-06 63.9
11 TraesCS4B01G174700 chr4A 96.577 1665 41 8 3245 4901 170169445 170167789 0.000000e+00 2745.0
12 TraesCS4B01G174700 chr4A 90.123 2106 98 41 409 2463 170171952 170169906 0.000000e+00 2636.0
13 TraesCS4B01G174700 chr4A 88.268 358 27 8 1 353 170172516 170172169 1.190000e-111 414.0
14 TraesCS4B01G174700 chr4A 89.883 257 14 6 2697 2944 170169798 170169545 2.660000e-83 320.0
15 TraesCS4B01G174700 chr4A 86.232 138 19 0 4061 4198 33622970 33622833 3.690000e-32 150.0
16 TraesCS4B01G174700 chr2B 97.518 967 24 0 4941 5907 42986333 42985367 0.000000e+00 1653.0
17 TraesCS4B01G174700 chr2B 93.525 139 5 4 2933 3070 550044044 550044179 2.800000e-48 204.0
18 TraesCS4B01G174700 chr1D 92.525 990 56 6 4939 5912 216793365 216792378 0.000000e+00 1402.0
19 TraesCS4B01G174700 chr6D 91.944 993 62 7 4939 5915 251017243 251016253 0.000000e+00 1375.0
20 TraesCS4B01G174700 chr6D 91.163 430 32 2 5480 5908 263928908 263929332 3.980000e-161 579.0
21 TraesCS4B01G174700 chr3D 90.669 986 67 9 4938 5908 7443290 7444265 0.000000e+00 1288.0
22 TraesCS4B01G174700 chr3D 81.517 844 78 33 4941 5732 573918700 573917883 1.810000e-174 623.0
23 TraesCS4B01G174700 chr5A 89.909 991 70 14 4938 5908 106921327 106922307 0.000000e+00 1249.0
24 TraesCS4B01G174700 chr5A 89.247 837 61 14 4939 5765 444341491 444342308 0.000000e+00 1020.0
25 TraesCS4B01G174700 chr3B 82.557 837 76 24 4939 5717 791279192 791278368 0.000000e+00 673.0
26 TraesCS4B01G174700 chr3B 88.115 244 29 0 4939 5182 304089927 304089684 2.090000e-74 291.0
27 TraesCS4B01G174700 chr5B 83.810 735 63 26 5219 5914 6513177 6512460 0.000000e+00 647.0
28 TraesCS4B01G174700 chr2D 94.558 147 6 2 2938 3084 619720541 619720685 5.970000e-55 226.0
29 TraesCS4B01G174700 chr2D 84.163 221 31 4 4108 4325 554076572 554076791 1.670000e-50 211.0
30 TraesCS4B01G174700 chr7A 95.070 142 6 1 2942 3083 78506136 78506276 7.720000e-54 222.0
31 TraesCS4B01G174700 chr2A 96.947 131 3 1 2940 3070 746976978 746977107 9.990000e-53 219.0
32 TraesCS4B01G174700 chr1B 96.241 133 4 1 2938 3070 277456430 277456299 3.590000e-52 217.0
33 TraesCS4B01G174700 chr1B 94.326 141 4 4 2943 3082 38109583 38109446 4.650000e-51 213.0
34 TraesCS4B01G174700 chr1B 90.625 160 8 7 2942 3099 649332729 649332883 7.770000e-49 206.0
35 TraesCS4B01G174700 chr1A 92.517 147 9 2 2943 3089 481650975 481651119 6.010000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G174700 chr4B 383094853 383100770 5917 False 10929.000000 10929 100.00000 1 5918 1 chr4B.!!$F3 5917
1 TraesCS4B01G174700 chr4B 212948669 212949643 974 False 1718.000000 1718 98.46200 4939 5913 1 chr4B.!!$F2 974
2 TraesCS4B01G174700 chr4B 24218085 24218802 717 False 617.000000 617 83.22000 5219 5907 1 chr4B.!!$F1 688
3 TraesCS4B01G174700 chr4D 307144510 307150112 5602 False 1221.866667 3001 94.85250 1 4892 6 chr4D.!!$F1 4891
4 TraesCS4B01G174700 chr4D 490164336 490165067 731 True 664.000000 664 84.14000 5219 5912 1 chr4D.!!$R2 693
5 TraesCS4B01G174700 chr4A 170167789 170172516 4727 True 1528.750000 2745 91.21275 1 4901 4 chr4A.!!$R2 4900
6 TraesCS4B01G174700 chr2B 42985367 42986333 966 True 1653.000000 1653 97.51800 4941 5907 1 chr2B.!!$R1 966
7 TraesCS4B01G174700 chr1D 216792378 216793365 987 True 1402.000000 1402 92.52500 4939 5912 1 chr1D.!!$R1 973
8 TraesCS4B01G174700 chr6D 251016253 251017243 990 True 1375.000000 1375 91.94400 4939 5915 1 chr6D.!!$R1 976
9 TraesCS4B01G174700 chr3D 7443290 7444265 975 False 1288.000000 1288 90.66900 4938 5908 1 chr3D.!!$F1 970
10 TraesCS4B01G174700 chr3D 573917883 573918700 817 True 623.000000 623 81.51700 4941 5732 1 chr3D.!!$R1 791
11 TraesCS4B01G174700 chr5A 106921327 106922307 980 False 1249.000000 1249 89.90900 4938 5908 1 chr5A.!!$F1 970
12 TraesCS4B01G174700 chr5A 444341491 444342308 817 False 1020.000000 1020 89.24700 4939 5765 1 chr5A.!!$F2 826
13 TraesCS4B01G174700 chr3B 791278368 791279192 824 True 673.000000 673 82.55700 4939 5717 1 chr3B.!!$R2 778
14 TraesCS4B01G174700 chr5B 6512460 6513177 717 True 647.000000 647 83.81000 5219 5914 1 chr5B.!!$R1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 189 0.175073 AGCTACGCTCTTTTACGGGG 59.825 55.000 0.00 0.00 30.62 5.73 F
812 1181 0.734597 CAGGCGCGTATGTACACACA 60.735 55.000 8.43 0.00 39.52 3.72 F
1068 1452 2.125310 CGTGCAATGGCGGACCTA 60.125 61.111 0.00 0.00 45.35 3.08 F
1806 2231 0.109597 GTGTCCAAATTGGCAGAGCG 60.110 55.000 7.24 0.00 37.47 5.03 F
2963 4095 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89 F
3066 4198 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1700 0.990282 ATGTAGGGGCATGCAGAGGT 60.990 55.0 21.36 1.13 0.00 3.85 R
1804 2229 2.354821 GTGTGAAGGGGATGAATTACGC 59.645 50.0 0.00 0.00 0.00 4.42 R
3047 4179 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R
3050 4182 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.00 44.66 2.17 R
4851 5991 0.308993 GACAGCCAAACACACTGAGC 59.691 55.0 0.00 0.00 35.38 4.26 R
4935 6078 0.538118 CGGAACCGACCCATTCCTAA 59.462 55.0 7.53 0.00 42.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 128 9.985318 GTTTGTCATTTAGATGAGATTTCTCTG 57.015 33.333 8.91 0.00 42.73 3.35
133 149 2.624029 GGGTCCATTGGTGGTGATCATT 60.624 50.000 0.00 0.00 46.16 2.57
141 157 2.158914 TGGTGGTGATCATTGAGGATCG 60.159 50.000 0.00 0.00 45.31 3.69
144 160 2.765699 TGGTGATCATTGAGGATCGACA 59.234 45.455 0.00 0.90 45.31 4.35
146 162 3.430790 GGTGATCATTGAGGATCGACACA 60.431 47.826 0.00 0.00 45.31 3.72
147 163 4.375272 GTGATCATTGAGGATCGACACAT 58.625 43.478 0.00 0.00 45.31 3.21
148 164 4.813161 GTGATCATTGAGGATCGACACATT 59.187 41.667 0.00 0.00 45.31 2.71
149 165 5.295292 GTGATCATTGAGGATCGACACATTT 59.705 40.000 0.00 0.00 45.31 2.32
150 166 5.882000 TGATCATTGAGGATCGACACATTTT 59.118 36.000 0.00 0.00 45.31 1.82
151 167 5.550232 TCATTGAGGATCGACACATTTTG 57.450 39.130 0.00 0.00 38.61 2.44
173 189 0.175073 AGCTACGCTCTTTTACGGGG 59.825 55.000 0.00 0.00 30.62 5.73
198 214 3.875727 CGAGATTGTGCATGAAGGAAGAT 59.124 43.478 0.00 0.00 0.00 2.40
231 247 3.243035 TGAAGCACATTTTGACGAAGGTG 60.243 43.478 0.00 0.00 42.44 4.00
234 250 0.958822 ACATTTTGACGAAGGTGGCC 59.041 50.000 0.00 0.00 0.00 5.36
276 292 7.523293 TGTCATGTTTGATTAATCACCACTT 57.477 32.000 17.76 12.15 36.36 3.16
304 320 9.740239 AGACATTATTTGCATTGATGACATTAC 57.260 29.630 8.38 0.00 0.00 1.89
361 377 7.839680 AAATTAACTCAGTTGATGAACCCTT 57.160 32.000 0.00 0.00 37.52 3.95
362 378 7.454260 AATTAACTCAGTTGATGAACCCTTC 57.546 36.000 0.00 0.00 37.52 3.46
412 587 2.092323 GGACCCTTGACCTTTGCATAC 58.908 52.381 0.00 0.00 0.00 2.39
498 689 2.076863 GTGAGAGGGACCGTTGAATTG 58.923 52.381 0.00 0.00 0.00 2.32
524 715 6.636447 TGTTTCGACATTTTTGCTAGTCATTG 59.364 34.615 0.00 0.00 0.00 2.82
535 726 9.474920 TTTTTGCTAGTCATTGACCAATAAAAG 57.525 29.630 13.14 2.00 32.18 2.27
571 764 5.093849 GGTTGTTGTAGAACCTGCCTATA 57.906 43.478 0.00 0.00 39.94 1.31
603 796 2.131709 CCGGATTGGCTCGGTAGGA 61.132 63.158 0.00 0.00 41.23 2.94
604 797 1.067582 CGGATTGGCTCGGTAGGAC 59.932 63.158 0.00 0.00 0.00 3.85
616 813 1.067212 CGGTAGGACCTTCTGAATCGG 59.933 57.143 0.00 0.00 35.66 4.18
617 814 2.108970 GGTAGGACCTTCTGAATCGGT 58.891 52.381 0.00 1.31 34.73 4.69
624 821 2.238898 ACCTTCTGAATCGGTTTAGGGG 59.761 50.000 0.00 6.07 0.00 4.79
627 824 2.829023 TCTGAATCGGTTTAGGGGAGT 58.171 47.619 0.00 0.00 0.00 3.85
631 828 4.835678 TGAATCGGTTTAGGGGAGTTAAC 58.164 43.478 0.00 0.00 0.00 2.01
716 1085 2.799412 TGCAAGCTTAAAACGCAATTGG 59.201 40.909 7.72 0.00 0.00 3.16
731 1100 5.105917 ACGCAATTGGAGGAAAACGAATTAT 60.106 36.000 7.72 0.00 0.00 1.28
796 1165 3.319137 TTCATTCACGAGAAGGTCAGG 57.681 47.619 7.11 0.00 36.90 3.86
812 1181 0.734597 CAGGCGCGTATGTACACACA 60.735 55.000 8.43 0.00 39.52 3.72
828 1199 8.252964 TGTACACACATACGTATATTTTTGCA 57.747 30.769 7.96 0.56 0.00 4.08
829 1200 8.718734 TGTACACACATACGTATATTTTTGCAA 58.281 29.630 7.96 0.00 0.00 4.08
868 1242 4.484872 GAACCCCAGCCCTACCGC 62.485 72.222 0.00 0.00 0.00 5.68
1068 1452 2.125310 CGTGCAATGGCGGACCTA 60.125 61.111 0.00 0.00 45.35 3.08
1165 1549 2.982130 GGTCCGTGGAGATGTGCT 59.018 61.111 0.00 0.00 0.00 4.40
1170 1554 2.887568 GTGGAGATGTGCTCGCGG 60.888 66.667 6.13 0.00 44.91 6.46
1315 1699 4.351938 TCGACACCAAGGTCCGCG 62.352 66.667 0.00 0.00 34.24 6.46
1316 1700 4.351938 CGACACCAAGGTCCGCGA 62.352 66.667 8.23 0.00 34.24 5.87
1395 1779 5.590259 ACCTTGTGATTGGCTTGTCATATAC 59.410 40.000 0.00 0.00 0.00 1.47
1396 1780 5.824624 CCTTGTGATTGGCTTGTCATATACT 59.175 40.000 0.00 0.00 0.00 2.12
1466 1866 3.229276 TGTGCGCATATTTTCCTTTGG 57.771 42.857 15.91 0.00 0.00 3.28
1471 1871 4.021544 TGCGCATATTTTCCTTTGGTTCTT 60.022 37.500 5.66 0.00 0.00 2.52
1582 2003 7.175347 AGAGCTCTTACATTGTCATACAGAA 57.825 36.000 11.45 0.00 0.00 3.02
1606 2030 4.649218 AGTTAGTTTGGATTTGTTGTGCCT 59.351 37.500 0.00 0.00 0.00 4.75
1713 2137 9.072375 TGAATTTGTATTGTTCACTGGACAATA 57.928 29.630 16.20 16.20 43.76 1.90
1804 2229 1.619654 TGGTGTCCAAATTGGCAGAG 58.380 50.000 7.24 0.00 37.47 3.35
1806 2231 0.109597 GTGTCCAAATTGGCAGAGCG 60.110 55.000 7.24 0.00 37.47 5.03
1916 2341 5.123936 GCTAACCGACTCCCTGATTAAATT 58.876 41.667 0.00 0.00 0.00 1.82
2348 3469 1.551883 GTAGGTTCCCACACGTACCAT 59.448 52.381 5.76 0.00 33.67 3.55
2667 3790 5.974751 GCCTGTCATAAAAACGTCAAGAAAA 59.025 36.000 0.00 0.00 0.00 2.29
2757 3880 5.125900 TCATGTTTCATTTGGTGGCTCTATG 59.874 40.000 0.00 0.00 0.00 2.23
2796 3920 5.692115 AAATTGGGTTGACTTTGAAGGTT 57.308 34.783 0.00 0.00 0.00 3.50
2812 3936 6.075762 TGAAGGTTGAGTGATTTTGTGATG 57.924 37.500 0.00 0.00 0.00 3.07
2901 4025 2.038689 TGTGGCATACGGTTTACAGGAA 59.961 45.455 0.00 0.00 0.00 3.36
2911 4043 4.223477 ACGGTTTACAGGAACTAGCCAATA 59.777 41.667 0.00 0.00 36.02 1.90
2947 4079 9.803315 TTCATTCGCTTGTATGATATATACTCC 57.197 33.333 0.00 0.00 30.71 3.85
2948 4080 8.414003 TCATTCGCTTGTATGATATATACTCCC 58.586 37.037 0.00 0.00 0.00 4.30
2949 4081 7.956328 TTCGCTTGTATGATATATACTCCCT 57.044 36.000 0.00 0.00 0.00 4.20
2950 4082 7.569639 TCGCTTGTATGATATATACTCCCTC 57.430 40.000 0.00 0.00 0.00 4.30
2951 4083 6.546403 TCGCTTGTATGATATATACTCCCTCC 59.454 42.308 0.00 0.00 0.00 4.30
2952 4084 6.513556 CGCTTGTATGATATATACTCCCTCCG 60.514 46.154 0.00 0.00 0.00 4.63
2953 4085 6.321690 GCTTGTATGATATATACTCCCTCCGT 59.678 42.308 0.00 0.00 0.00 4.69
2954 4086 7.468906 GCTTGTATGATATATACTCCCTCCGTC 60.469 44.444 0.00 0.00 0.00 4.79
2955 4087 6.363065 TGTATGATATATACTCCCTCCGTCC 58.637 44.000 0.00 0.00 0.00 4.79
2956 4088 3.882444 TGATATATACTCCCTCCGTCCG 58.118 50.000 0.00 0.00 0.00 4.79
2957 4089 3.520721 TGATATATACTCCCTCCGTCCGA 59.479 47.826 0.00 0.00 0.00 4.55
2958 4090 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
2959 4091 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
2960 4092 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
2961 4093 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2962 4094 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2963 4095 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2964 4096 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2965 4097 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2966 4098 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2967 4099 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2968 4100 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2969 4101 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2970 4102 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2971 4103 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2972 4104 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2973 4105 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2974 4106 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2975 4107 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2976 4108 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2977 4109 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
2978 4110 9.490663 GTCCGAAAATACTTGTCATCAAAATAG 57.509 33.333 0.00 0.00 32.87 1.73
2979 4111 9.443323 TCCGAAAATACTTGTCATCAAAATAGA 57.557 29.630 0.00 0.00 32.87 1.98
3056 4188 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
3057 4189 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3058 4190 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3059 4191 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3060 4192 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3061 4193 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3062 4194 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3063 4195 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3064 4196 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3065 4197 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3066 4198 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3067 4199 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3115 4247 6.600388 TGGCTTGCATATCAGGATTTACTTA 58.400 36.000 0.00 0.00 0.00 2.24
3146 4278 8.459911 ACTTACTGCTGGTAAAAGTAATTTGT 57.540 30.769 0.00 0.00 39.56 2.83
3147 4279 8.349983 ACTTACTGCTGGTAAAAGTAATTTGTG 58.650 33.333 0.00 0.00 39.56 3.33
3148 4280 5.528870 ACTGCTGGTAAAAGTAATTTGTGC 58.471 37.500 0.00 0.00 32.27 4.57
3149 4281 5.068460 ACTGCTGGTAAAAGTAATTTGTGCA 59.932 36.000 0.00 0.00 32.27 4.57
3189 4321 4.141914 CCATGACCTTGTACCTAGAACTCC 60.142 50.000 0.00 0.00 0.00 3.85
3639 4775 2.690840 GTGGATATCCTACAGTGGGGT 58.309 52.381 22.35 0.00 36.82 4.95
3642 4778 3.046374 GGATATCCTACAGTGGGGTGTT 58.954 50.000 14.97 0.00 31.46 3.32
3723 4859 1.300620 CCGAAGTGTGCTCGGTGAA 60.301 57.895 3.30 0.00 41.62 3.18
3881 5017 8.375465 GCTAATTTTGATGACATACTTGCAAAC 58.625 33.333 0.00 0.00 0.00 2.93
4109 5245 1.273606 ACTGACTGCGTGATGCTTAGT 59.726 47.619 0.00 0.00 46.63 2.24
4250 5386 1.139853 CCAGTTCCTATGAGCCCACTC 59.860 57.143 0.00 0.00 43.76 3.51
4304 5440 0.179062 ATGTCTCCAAGGCATCGCTC 60.179 55.000 0.00 0.00 35.19 5.03
4660 5796 2.774234 CAGTGGATTAGGGTCAGGTGAT 59.226 50.000 0.00 0.00 0.00 3.06
4703 5839 7.931578 ATTTTGTTAGGTTGTTATCGGATCA 57.068 32.000 0.00 0.00 0.00 2.92
4845 5985 6.565234 ACTCGCTACTCAATATATATGCCAC 58.435 40.000 0.00 0.00 0.00 5.01
4849 5989 7.035612 CGCTACTCAATATATATGCCACTTCA 58.964 38.462 0.00 0.00 0.00 3.02
4851 5991 8.824781 GCTACTCAATATATATGCCACTTCATG 58.175 37.037 0.00 0.00 0.00 3.07
4853 5993 7.400439 ACTCAATATATATGCCACTTCATGCT 58.600 34.615 0.00 0.00 0.00 3.79
4854 5994 7.551974 ACTCAATATATATGCCACTTCATGCTC 59.448 37.037 0.00 0.00 0.00 4.26
4855 5995 7.396418 TCAATATATATGCCACTTCATGCTCA 58.604 34.615 0.00 0.00 0.00 4.26
4856 5996 7.551617 TCAATATATATGCCACTTCATGCTCAG 59.448 37.037 0.00 0.00 0.00 3.35
4860 6000 0.520404 GCCACTTCATGCTCAGTGTG 59.480 55.000 14.69 9.49 39.09 3.82
4861 6001 1.888215 CCACTTCATGCTCAGTGTGT 58.112 50.000 14.69 0.00 39.09 3.72
4864 6004 3.549423 CCACTTCATGCTCAGTGTGTTTG 60.549 47.826 14.69 0.00 39.09 2.93
4866 6006 0.953727 TCATGCTCAGTGTGTTTGGC 59.046 50.000 0.00 0.00 0.00 4.52
4867 6007 0.956633 CATGCTCAGTGTGTTTGGCT 59.043 50.000 0.00 0.00 0.00 4.75
4868 6008 0.956633 ATGCTCAGTGTGTTTGGCTG 59.043 50.000 0.00 0.00 0.00 4.85
4898 6041 7.816640 AGTTTTATACAAAGATCATGCGTTGT 58.183 30.769 8.97 8.97 41.90 3.32
4901 6044 2.229792 ACAAAGATCATGCGTTGTGGT 58.770 42.857 4.39 0.00 38.67 4.16
4902 6045 3.407698 ACAAAGATCATGCGTTGTGGTA 58.592 40.909 4.39 0.00 38.67 3.25
4903 6046 3.188460 ACAAAGATCATGCGTTGTGGTAC 59.812 43.478 4.39 0.00 38.67 3.34
4904 6047 2.760634 AGATCATGCGTTGTGGTACA 57.239 45.000 0.00 0.00 0.00 2.90
4921 6064 3.664495 ACATGCAGTGTGAGCAGC 58.336 55.556 0.00 0.00 46.36 5.25
4922 6065 1.072678 ACATGCAGTGTGAGCAGCT 59.927 52.632 0.00 0.00 46.36 4.24
4923 6066 1.235281 ACATGCAGTGTGAGCAGCTG 61.235 55.000 10.11 10.11 46.36 4.24
4924 6067 0.953960 CATGCAGTGTGAGCAGCTGA 60.954 55.000 20.43 0.00 46.36 4.26
4925 6068 0.673956 ATGCAGTGTGAGCAGCTGAG 60.674 55.000 20.43 0.00 46.36 3.35
4926 6069 2.678956 GCAGTGTGAGCAGCTGAGC 61.679 63.158 20.43 8.72 32.39 4.26
4927 6070 1.301479 CAGTGTGAGCAGCTGAGCA 60.301 57.895 20.43 11.59 36.85 4.26
4928 6071 1.004799 AGTGTGAGCAGCTGAGCAG 60.005 57.895 20.43 0.00 36.85 4.24
4929 6072 2.033755 GTGTGAGCAGCTGAGCAGG 61.034 63.158 20.43 0.00 36.85 4.85
4930 6073 2.346739 GTGAGCAGCTGAGCAGGT 59.653 61.111 20.43 3.57 40.20 4.00
4931 6074 1.302351 GTGAGCAGCTGAGCAGGTT 60.302 57.895 20.43 0.00 36.98 3.50
4932 6075 1.004080 TGAGCAGCTGAGCAGGTTC 60.004 57.895 20.43 6.62 36.98 3.62
4933 6076 1.744741 GAGCAGCTGAGCAGGTTCC 60.745 63.158 20.43 0.00 36.98 3.62
4934 6077 2.182732 GAGCAGCTGAGCAGGTTCCT 62.183 60.000 20.43 0.33 36.98 3.36
4935 6078 1.303155 GCAGCTGAGCAGGTTCCTT 60.303 57.895 20.43 0.00 36.98 3.36
4936 6079 0.892814 GCAGCTGAGCAGGTTCCTTT 60.893 55.000 20.43 0.00 36.98 3.11
5099 6246 5.185828 TCAGCAGCAGAGTATTCAAGTTCTA 59.814 40.000 0.00 0.00 0.00 2.10
5891 7168 1.418264 TCACATTCCAGTCCGTTCCAA 59.582 47.619 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.372659 ACACGATGAAGCTTGTAAAATCTCAT 59.627 34.615 2.10 0.00 0.00 2.90
133 149 3.694043 TCCAAAATGTGTCGATCCTCA 57.306 42.857 0.00 0.00 0.00 3.86
173 189 3.002791 TCCTTCATGCACAATCTCGAAC 58.997 45.455 0.00 0.00 0.00 3.95
198 214 7.487829 GTCAAAATGTGCTTCAAAACTTGACTA 59.512 33.333 0.00 0.00 39.87 2.59
231 247 3.912899 CAAATGGAAGTTGGTGGCC 57.087 52.632 0.00 0.00 38.43 5.36
304 320 6.189677 TCACCCGCTTTATTTAAACATCAG 57.810 37.500 0.00 0.00 0.00 2.90
340 356 5.935945 TGAAGGGTTCATCAACTGAGTTAA 58.064 37.500 0.00 0.00 34.68 2.01
341 357 5.560722 TGAAGGGTTCATCAACTGAGTTA 57.439 39.130 0.00 0.00 34.68 2.24
394 410 2.375174 TCAGTATGCAAAGGTCAAGGGT 59.625 45.455 0.00 0.00 34.76 4.34
395 411 3.071874 TCAGTATGCAAAGGTCAAGGG 57.928 47.619 0.00 0.00 34.76 3.95
396 412 3.820467 TGTTCAGTATGCAAAGGTCAAGG 59.180 43.478 0.00 0.00 34.76 3.61
404 420 7.227711 TGCTAAGTAGTTTGTTCAGTATGCAAA 59.772 33.333 0.00 0.00 34.76 3.68
412 587 5.462398 ACGAGTTGCTAAGTAGTTTGTTCAG 59.538 40.000 0.00 0.00 0.00 3.02
498 689 5.507077 TGACTAGCAAAAATGTCGAAACAC 58.493 37.500 0.00 0.00 38.48 3.32
535 726 8.597662 TCTACAACAACCTGTAGTGAAAATAC 57.402 34.615 9.84 0.00 46.00 1.89
562 753 4.759183 GGCTTCTCTTCAAATATAGGCAGG 59.241 45.833 0.00 0.00 0.00 4.85
571 764 3.019564 CAATCCGGGCTTCTCTTCAAAT 58.980 45.455 0.00 0.00 0.00 2.32
603 796 2.238898 CCCCTAAACCGATTCAGAAGGT 59.761 50.000 0.00 0.00 40.50 3.50
604 797 2.504175 TCCCCTAAACCGATTCAGAAGG 59.496 50.000 0.00 0.00 0.00 3.46
616 813 5.628130 AGACTTTGGTTAACTCCCCTAAAC 58.372 41.667 5.42 0.00 0.00 2.01
617 814 5.917545 AGACTTTGGTTAACTCCCCTAAA 57.082 39.130 5.42 0.00 0.00 1.85
624 821 8.392372 AGGACAATTTAGACTTTGGTTAACTC 57.608 34.615 5.42 0.00 0.00 3.01
627 824 9.629878 TTGTAGGACAATTTAGACTTTGGTTAA 57.370 29.630 0.00 0.00 32.34 2.01
631 828 7.745620 ACTTGTAGGACAATTTAGACTTTGG 57.254 36.000 0.00 0.00 37.48 3.28
680 877 9.627123 TTTAAGCTTGCATAGGAAGTACAATAT 57.373 29.630 9.86 0.00 0.00 1.28
681 878 9.456147 TTTTAAGCTTGCATAGGAAGTACAATA 57.544 29.630 9.86 0.00 0.00 1.90
682 879 7.938140 TTTAAGCTTGCATAGGAAGTACAAT 57.062 32.000 9.86 0.00 0.00 2.71
683 880 7.572353 CGTTTTAAGCTTGCATAGGAAGTACAA 60.572 37.037 9.86 0.00 0.00 2.41
685 882 6.248631 CGTTTTAAGCTTGCATAGGAAGTAC 58.751 40.000 9.86 0.00 0.00 2.73
694 1062 3.432933 CCAATTGCGTTTTAAGCTTGCAT 59.567 39.130 9.86 0.00 35.20 3.96
716 1085 4.200092 AGAGGGCATAATTCGTTTTCCTC 58.800 43.478 0.00 0.00 39.67 3.71
731 1100 2.306847 GTTTTCTTGTGGAAGAGGGCA 58.693 47.619 0.00 0.00 39.44 5.36
776 1145 2.612972 GCCTGACCTTCTCGTGAATGAA 60.613 50.000 9.09 0.00 0.00 2.57
777 1146 1.066858 GCCTGACCTTCTCGTGAATGA 60.067 52.381 9.09 0.00 0.00 2.57
778 1147 1.363744 GCCTGACCTTCTCGTGAATG 58.636 55.000 0.00 0.73 0.00 2.67
779 1148 0.108615 CGCCTGACCTTCTCGTGAAT 60.109 55.000 0.00 0.00 0.00 2.57
792 1161 0.457166 GTGTGTACATACGCGCCTGA 60.457 55.000 5.73 0.00 40.31 3.86
848 1222 1.923909 GGTAGGGCTGGGGTTCACT 60.924 63.158 0.00 0.00 0.00 3.41
849 1223 2.675371 GGTAGGGCTGGGGTTCAC 59.325 66.667 0.00 0.00 0.00 3.18
850 1224 3.006728 CGGTAGGGCTGGGGTTCA 61.007 66.667 0.00 0.00 0.00 3.18
851 1225 4.484872 GCGGTAGGGCTGGGGTTC 62.485 72.222 0.00 0.00 0.00 3.62
854 1228 2.372074 TAAAGCGGTAGGGCTGGGG 61.372 63.158 0.00 0.00 43.93 4.96
1015 1399 1.444553 GTGGTGCGAGACGAAGGAG 60.445 63.158 0.00 0.00 0.00 3.69
1108 1492 2.009042 GCAGACGATCTTGGTCTTGGG 61.009 57.143 0.00 0.00 42.63 4.12
1315 1699 1.147153 GTAGGGGCATGCAGAGGTC 59.853 63.158 21.36 0.00 0.00 3.85
1316 1700 0.990282 ATGTAGGGGCATGCAGAGGT 60.990 55.000 21.36 1.13 0.00 3.85
1494 1894 4.643334 AGGTACACAAGTCGCATGTATAGA 59.357 41.667 0.00 0.00 31.79 1.98
1582 2003 5.128663 AGGCACAACAAATCCAAACTAACTT 59.871 36.000 0.00 0.00 0.00 2.66
1606 2030 4.209538 AGATGCCTAATTGTATGCAAGCA 58.790 39.130 9.88 9.88 38.10 3.91
1804 2229 2.354821 GTGTGAAGGGGATGAATTACGC 59.645 50.000 0.00 0.00 0.00 4.42
1806 2231 3.606687 ACGTGTGAAGGGGATGAATTAC 58.393 45.455 0.00 0.00 0.00 1.89
1951 2376 7.621428 AAAGGACTTCTCAACATATGTCATG 57.379 36.000 9.23 4.96 0.00 3.07
2109 2541 4.962362 TGGCACTTTCTGGATCTGTATAGA 59.038 41.667 0.00 0.00 37.35 1.98
2348 3469 5.122554 TGTTTCTTTCGTTGCTTGTACAAGA 59.877 36.000 34.43 18.81 40.79 3.02
2501 3623 9.988350 CACAATTTTAGATCAAGTAATAACGCT 57.012 29.630 0.00 0.00 0.00 5.07
2757 3880 8.896320 ACCCAATTTTTAAACAGACCAATAAC 57.104 30.769 0.00 0.00 0.00 1.89
2796 3920 6.942005 ACAACTATCCATCACAAAATCACTCA 59.058 34.615 0.00 0.00 0.00 3.41
2812 3936 3.857157 TCCAGGCCAATACAACTATCC 57.143 47.619 5.01 0.00 0.00 2.59
2911 4043 8.360390 TCATACAAGCGAATGAATATCTAGTGT 58.640 33.333 0.00 0.00 0.00 3.55
2942 4074 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2943 4075 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2944 4076 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2945 4077 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2946 4078 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2947 4079 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2948 4080 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2949 4081 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2950 4082 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2951 4083 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2952 4084 9.490663 CTATTTTGATGACAAGTATTTTCGGAC 57.509 33.333 0.00 0.00 37.32 4.79
2953 4085 9.443323 TCTATTTTGATGACAAGTATTTTCGGA 57.557 29.630 0.00 0.00 37.32 4.55
3031 4163 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
3032 4164 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
3033 4165 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
3034 4166 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3035 4167 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3036 4168 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3037 4169 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3038 4170 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3039 4171 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3040 4172 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3041 4173 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3042 4174 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3043 4175 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3044 4176 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3045 4177 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3046 4178 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3047 4179 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3048 4180 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3049 4181 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3050 4182 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3051 4183 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3052 4184 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3053 4185 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
3054 4186 0.467659 AATCTACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
3055 4187 1.878734 GTAATCTACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
3056 4188 3.226682 AGTAATCTACTCCCTCCGTCC 57.773 52.381 0.00 0.00 32.47 4.79
3057 4189 6.897706 AATTAGTAATCTACTCCCTCCGTC 57.102 41.667 0.00 0.00 40.14 4.79
3058 4190 8.953223 AATAATTAGTAATCTACTCCCTCCGT 57.047 34.615 0.00 0.00 40.14 4.69
3128 4260 6.618379 GCATTGCACAAATTACTTTTACCAGC 60.618 38.462 3.15 0.00 0.00 4.85
3129 4261 6.646240 AGCATTGCACAAATTACTTTTACCAG 59.354 34.615 11.91 0.00 0.00 4.00
3130 4262 6.520272 AGCATTGCACAAATTACTTTTACCA 58.480 32.000 11.91 0.00 0.00 3.25
3131 4263 8.527567 TTAGCATTGCACAAATTACTTTTACC 57.472 30.769 11.91 0.00 0.00 2.85
3134 4266 8.069574 GCTTTTAGCATTGCACAAATTACTTTT 58.930 29.630 11.91 0.00 41.89 2.27
3135 4267 7.442062 AGCTTTTAGCATTGCACAAATTACTTT 59.558 29.630 11.91 0.00 45.56 2.66
3136 4268 6.930722 AGCTTTTAGCATTGCACAAATTACTT 59.069 30.769 11.91 0.00 45.56 2.24
3137 4269 6.366877 CAGCTTTTAGCATTGCACAAATTACT 59.633 34.615 11.91 5.86 45.56 2.24
3138 4270 6.527957 CAGCTTTTAGCATTGCACAAATTAC 58.472 36.000 11.91 3.95 45.56 1.89
3139 4271 5.120519 GCAGCTTTTAGCATTGCACAAATTA 59.879 36.000 11.91 0.00 45.56 1.40
3140 4272 4.083696 GCAGCTTTTAGCATTGCACAAATT 60.084 37.500 11.91 0.00 45.56 1.82
3141 4273 3.434299 GCAGCTTTTAGCATTGCACAAAT 59.566 39.130 11.91 0.00 45.56 2.32
3142 4274 2.801679 GCAGCTTTTAGCATTGCACAAA 59.198 40.909 11.91 7.78 45.56 2.83
3143 4275 2.036217 AGCAGCTTTTAGCATTGCACAA 59.964 40.909 11.91 1.42 45.56 3.33
3144 4276 1.614903 AGCAGCTTTTAGCATTGCACA 59.385 42.857 11.91 0.00 45.56 4.57
3145 4277 2.358939 AGCAGCTTTTAGCATTGCAC 57.641 45.000 11.91 0.00 45.56 4.57
3146 4278 2.353011 GGAAGCAGCTTTTAGCATTGCA 60.353 45.455 9.62 0.00 45.56 4.08
3147 4279 2.265683 GGAAGCAGCTTTTAGCATTGC 58.734 47.619 9.62 0.00 45.56 3.56
3148 4280 3.581024 TGGAAGCAGCTTTTAGCATTG 57.419 42.857 9.62 0.00 45.56 2.82
3149 4281 3.765511 TCATGGAAGCAGCTTTTAGCATT 59.234 39.130 9.62 0.00 45.56 3.56
3639 4775 4.384940 TCATGTCGATCTTGTTTGGAACA 58.615 39.130 0.00 0.00 40.21 3.18
3642 4778 4.811024 GCTATCATGTCGATCTTGTTTGGA 59.189 41.667 0.00 0.00 35.39 3.53
3723 4859 6.830324 ACATAAGTATGATTGACTTGGCATGT 59.170 34.615 5.63 5.63 37.68 3.21
3764 4900 2.259266 AAAATGCAAGCTTTGTGGGG 57.741 45.000 0.00 0.00 0.00 4.96
3854 4990 6.257423 TGCAAGTATGTCATCAAAATTAGCG 58.743 36.000 0.00 0.00 0.00 4.26
3881 5017 1.081892 CAACCATGAAGGCGTCTGAG 58.918 55.000 0.00 0.00 43.14 3.35
3929 5065 8.174733 TCTGAGCAAAGAAAATCTTCTCAATT 57.825 30.769 10.74 0.00 41.23 2.32
4109 5245 4.383861 CCTGCTGCAGTCTCGCCA 62.384 66.667 26.41 2.24 0.00 5.69
4250 5386 0.994995 CTGACGATGCCAAACTCTCG 59.005 55.000 0.00 0.00 37.17 4.04
4373 5509 0.588252 CTGGAACCACGCAGTTCAAG 59.412 55.000 17.08 12.63 46.52 3.02
4660 5796 2.669744 TTTGCCCCCATGAGCCAACA 62.670 55.000 0.00 0.00 0.00 3.33
4703 5839 3.947196 TGAGCCAACAAAATGATAGCGAT 59.053 39.130 0.00 0.00 0.00 4.58
4845 5985 2.606308 GCCAAACACACTGAGCATGAAG 60.606 50.000 0.00 0.00 0.00 3.02
4849 5989 0.956633 CAGCCAAACACACTGAGCAT 59.043 50.000 0.00 0.00 33.10 3.79
4851 5991 0.308993 GACAGCCAAACACACTGAGC 59.691 55.000 0.00 0.00 35.38 4.26
4853 5993 3.118408 ACTTAGACAGCCAAACACACTGA 60.118 43.478 0.00 0.00 35.38 3.41
4854 5994 3.206150 ACTTAGACAGCCAAACACACTG 58.794 45.455 0.00 0.00 37.45 3.66
4855 5995 3.560636 ACTTAGACAGCCAAACACACT 57.439 42.857 0.00 0.00 0.00 3.55
4856 5996 4.632538 AAACTTAGACAGCCAAACACAC 57.367 40.909 0.00 0.00 0.00 3.82
4860 6000 9.394477 CTTTGTATAAAACTTAGACAGCCAAAC 57.606 33.333 0.00 0.00 0.00 2.93
4861 6001 9.344772 TCTTTGTATAAAACTTAGACAGCCAAA 57.655 29.630 0.00 0.00 0.00 3.28
4864 6004 9.162764 TGATCTTTGTATAAAACTTAGACAGCC 57.837 33.333 0.00 0.00 0.00 4.85
4868 6008 9.638300 CGCATGATCTTTGTATAAAACTTAGAC 57.362 33.333 0.00 0.00 0.00 2.59
4904 6047 1.072678 AGCTGCTCACACTGCATGT 59.927 52.632 0.00 0.00 44.81 3.21
4905 6048 0.953960 TCAGCTGCTCACACTGCATG 60.954 55.000 9.47 0.00 39.86 4.06
4906 6049 0.673956 CTCAGCTGCTCACACTGCAT 60.674 55.000 9.47 0.00 39.86 3.96
4907 6050 1.301479 CTCAGCTGCTCACACTGCA 60.301 57.895 9.47 0.00 37.00 4.41
4908 6051 2.678956 GCTCAGCTGCTCACACTGC 61.679 63.158 9.47 0.00 34.97 4.40
4909 6052 1.292571 CTGCTCAGCTGCTCACACTG 61.293 60.000 9.47 0.00 0.00 3.66
4910 6053 1.004799 CTGCTCAGCTGCTCACACT 60.005 57.895 9.47 0.00 0.00 3.55
4911 6054 2.033755 CCTGCTCAGCTGCTCACAC 61.034 63.158 9.47 0.00 0.00 3.82
4912 6055 2.048419 AACCTGCTCAGCTGCTCACA 62.048 55.000 9.47 3.25 0.00 3.58
4913 6056 1.297456 GAACCTGCTCAGCTGCTCAC 61.297 60.000 9.47 0.00 0.00 3.51
4914 6057 1.004080 GAACCTGCTCAGCTGCTCA 60.004 57.895 9.47 8.18 0.00 4.26
4915 6058 1.744741 GGAACCTGCTCAGCTGCTC 60.745 63.158 9.47 3.29 0.00 4.26
4916 6059 1.776975 AAGGAACCTGCTCAGCTGCT 61.777 55.000 9.47 0.00 0.00 4.24
4917 6060 0.892814 AAAGGAACCTGCTCAGCTGC 60.893 55.000 9.47 0.00 0.00 5.25
4918 6061 2.354259 CTAAAGGAACCTGCTCAGCTG 58.646 52.381 7.63 7.63 0.00 4.24
4919 6062 1.280421 CCTAAAGGAACCTGCTCAGCT 59.720 52.381 0.00 0.00 37.39 4.24
4920 6063 1.279271 TCCTAAAGGAACCTGCTCAGC 59.721 52.381 0.00 0.00 42.18 4.26
4931 6074 1.961133 ACCGACCCATTCCTAAAGGA 58.039 50.000 0.00 0.00 43.73 3.36
4932 6075 2.640184 GAACCGACCCATTCCTAAAGG 58.360 52.381 0.00 0.00 0.00 3.11
4933 6076 2.640184 GGAACCGACCCATTCCTAAAG 58.360 52.381 0.00 0.00 41.13 1.85
4934 6077 1.065998 CGGAACCGACCCATTCCTAAA 60.066 52.381 7.53 0.00 42.00 1.85
4935 6078 0.538118 CGGAACCGACCCATTCCTAA 59.462 55.000 7.53 0.00 42.00 2.69
4936 6079 0.615544 ACGGAACCGACCCATTCCTA 60.616 55.000 20.14 0.00 42.00 2.94
5872 7149 1.535462 GTTGGAACGGACTGGAATGTG 59.465 52.381 0.00 0.00 0.00 3.21
5891 7168 6.262273 CACATTCTAAGGGTGTGTTTAGTTGT 59.738 38.462 0.00 0.00 38.66 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.