Multiple sequence alignment - TraesCS4B01G173800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G173800 chr4B 100.000 2657 0 0 1 2657 381108986 381111642 0.000000e+00 4907.0
1 TraesCS4B01G173800 chr4B 86.018 329 34 9 1976 2303 5260378 5260695 2.530000e-90 342.0
2 TraesCS4B01G173800 chr4B 84.127 189 28 1 1701 1887 5260063 5260251 5.840000e-42 182.0
3 TraesCS4B01G173800 chr4B 100.000 42 0 0 2523 2564 106487260 106487301 7.890000e-11 78.7
4 TraesCS4B01G173800 chr4D 94.717 1041 36 9 666 1702 305076439 305077464 0.000000e+00 1600.0
5 TraesCS4B01G173800 chr4D 91.919 297 17 5 291 585 464077841 464078132 2.460000e-110 409.0
6 TraesCS4B01G173800 chr4D 90.260 308 18 9 298 599 458115810 458115509 2.480000e-105 392.0
7 TraesCS4B01G173800 chr4D 92.973 185 8 2 2388 2572 84999551 84999372 5.640000e-67 265.0
8 TraesCS4B01G173800 chr4D 91.358 81 7 0 580 660 464078618 464078698 7.770000e-21 111.0
9 TraesCS4B01G173800 chr1B 95.816 956 39 1 1703 2657 483597929 483598884 0.000000e+00 1543.0
10 TraesCS4B01G173800 chr1B 88.810 706 37 7 1703 2385 143087060 143087746 0.000000e+00 828.0
11 TraesCS4B01G173800 chr1B 96.928 293 7 1 2365 2657 69572689 69572399 8.550000e-135 490.0
12 TraesCS4B01G173800 chr1B 97.605 167 3 1 2217 2382 69573545 69573379 4.330000e-73 285.0
13 TraesCS4B01G173800 chr1B 89.617 183 13 3 2388 2569 32992048 32992225 7.400000e-56 228.0
14 TraesCS4B01G173800 chr1B 83.422 187 22 7 2118 2303 143088298 143088120 5.880000e-37 165.0
15 TraesCS4B01G173800 chr1B 97.647 85 2 0 2573 2657 143087738 143087822 2.130000e-31 147.0
16 TraesCS4B01G173800 chr1B 93.590 78 5 0 583 660 95777960 95777883 1.670000e-22 117.0
17 TraesCS4B01G173800 chr4A 94.955 773 36 3 931 1702 173401527 173402297 0.000000e+00 1208.0
18 TraesCS4B01G173800 chr4A 94.014 284 16 1 1 283 586016269 586016552 1.890000e-116 429.0
19 TraesCS4B01G173800 chr4A 90.661 257 15 6 2048 2303 687311172 687310924 1.520000e-87 333.0
20 TraesCS4B01G173800 chr4A 89.928 139 3 4 757 892 173401397 173401527 4.550000e-38 169.0
21 TraesCS4B01G173800 chr4A 86.928 153 13 5 2431 2581 666940925 666940778 5.880000e-37 165.0
22 TraesCS4B01G173800 chr4A 92.708 96 7 0 667 762 173400729 173400824 3.570000e-29 139.0
23 TraesCS4B01G173800 chr4A 96.429 56 2 0 666 721 173400681 173400736 2.820000e-15 93.5
24 TraesCS4B01G173800 chr5B 90.341 704 39 6 1703 2385 666860336 666861031 0.000000e+00 896.0
25 TraesCS4B01G173800 chr5B 88.350 412 28 5 1703 2095 271785598 271785188 6.650000e-131 477.0
26 TraesCS4B01G173800 chr5B 95.302 298 11 2 2088 2385 271784066 271783772 1.110000e-128 470.0
27 TraesCS4B01G173800 chr5B 93.011 186 9 2 2384 2569 107198323 107198504 4.360000e-68 268.0
28 TraesCS4B01G173800 chr5B 90.141 142 10 1 2388 2529 11309525 11309388 5.840000e-42 182.0
29 TraesCS4B01G173800 chr5B 83.957 187 22 6 2118 2303 70839378 70839557 3.520000e-39 172.0
30 TraesCS4B01G173800 chr5B 97.647 85 2 0 2573 2657 666861023 666861107 2.130000e-31 147.0
31 TraesCS4B01G173800 chr5B 95.294 85 4 0 2573 2657 271783780 271783696 4.610000e-28 135.0
32 TraesCS4B01G173800 chr1D 94.718 284 14 1 1 283 459941494 459941777 8.730000e-120 440.0
33 TraesCS4B01G173800 chr1D 93.684 285 17 1 1 284 414821939 414822223 2.440000e-115 425.0
34 TraesCS4B01G173800 chr1D 93.333 285 18 1 1 284 175594444 175594728 1.140000e-113 420.0
35 TraesCS4B01G173800 chr1D 90.847 295 21 5 298 590 303209588 303209878 8.920000e-105 390.0
36 TraesCS4B01G173800 chr5D 94.366 284 15 1 1 283 502923601 502923884 4.060000e-118 435.0
37 TraesCS4B01G173800 chr5D 93.728 287 17 1 1 286 422179147 422179433 1.890000e-116 429.0
38 TraesCS4B01G173800 chr5D 94.014 284 16 1 1 283 449385511 449385794 1.890000e-116 429.0
39 TraesCS4B01G173800 chr5D 90.323 310 19 8 292 595 402695224 402695528 1.920000e-106 396.0
40 TraesCS4B01G173800 chr7A 94.014 284 15 2 1 283 575118581 575118299 1.890000e-116 429.0
41 TraesCS4B01G173800 chr2A 94.014 284 15 2 1 283 247481768 247481486 1.890000e-116 429.0
42 TraesCS4B01G173800 chr7B 92.069 290 17 4 298 585 680530070 680530355 1.150000e-108 403.0
43 TraesCS4B01G173800 chr7B 88.327 257 20 8 2048 2303 726829740 726829493 1.550000e-77 300.0
44 TraesCS4B01G173800 chr7B 86.096 187 26 0 1701 1887 726830036 726829850 4.480000e-48 202.0
45 TraesCS4B01G173800 chr7B 92.308 39 1 2 2397 2433 712075099 712075061 1.000000e-03 54.7
46 TraesCS4B01G173800 chr3D 91.275 298 18 7 292 585 599180628 599180335 1.480000e-107 399.0
47 TraesCS4B01G173800 chr3D 91.319 288 19 4 300 585 47882876 47883159 3.210000e-104 388.0
48 TraesCS4B01G173800 chr3D 91.566 83 7 0 580 662 47883632 47883714 6.010000e-22 115.0
49 TraesCS4B01G173800 chr6A 90.429 303 21 5 298 596 604664947 604664649 2.480000e-105 392.0
50 TraesCS4B01G173800 chr6A 93.671 79 5 0 583 661 604664182 604664104 4.650000e-23 119.0
51 TraesCS4B01G173800 chr3B 90.365 301 23 4 298 595 707893196 707893493 8.920000e-105 390.0
52 TraesCS4B01G173800 chr3B 89.674 184 12 3 2390 2573 256728203 256728027 7.400000e-56 228.0
53 TraesCS4B01G173800 chr3B 85.000 160 18 2 2383 2540 16694096 16694251 9.850000e-35 158.0
54 TraesCS4B01G173800 chr6B 85.449 323 34 10 1982 2303 93829509 93829199 9.170000e-85 324.0
55 TraesCS4B01G173800 chr6B 90.426 188 18 0 1700 1887 93829831 93829644 5.680000e-62 248.0
56 TraesCS4B01G173800 chr2B 90.323 186 14 1 2388 2573 664210595 664210414 9.500000e-60 241.0
57 TraesCS4B01G173800 chr2B 90.270 185 14 1 2388 2572 371564885 371564705 3.420000e-59 239.0
58 TraesCS4B01G173800 chr2B 91.358 81 7 0 580 660 35114522 35114602 7.770000e-21 111.0
59 TraesCS4B01G173800 chr6D 93.333 75 5 0 586 660 6576449 6576375 7.770000e-21 111.0
60 TraesCS4B01G173800 chr6D 91.026 78 7 0 583 660 19532610 19532533 3.620000e-19 106.0
61 TraesCS4B01G173800 chr6D 100.000 28 0 0 2223 2250 426933973 426934000 5.000000e-03 52.8
62 TraesCS4B01G173800 chr2D 91.358 81 7 0 580 660 121699974 121700054 7.770000e-21 111.0
63 TraesCS4B01G173800 chr7D 92.208 77 6 0 584 660 107509674 107509598 2.800000e-20 110.0
64 TraesCS4B01G173800 chr7D 90.123 81 8 0 580 660 74751048 74751128 3.620000e-19 106.0
65 TraesCS4B01G173800 chrUn 92.000 75 6 0 586 660 62960843 62960769 3.620000e-19 106.0
66 TraesCS4B01G173800 chrUn 88.889 81 7 2 580 660 41878418 41878496 6.050000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G173800 chr4B 381108986 381111642 2656 False 4907.000000 4907 100.0000 1 2657 1 chr4B.!!$F2 2656
1 TraesCS4B01G173800 chr4B 5260063 5260695 632 False 262.000000 342 85.0725 1701 2303 2 chr4B.!!$F3 602
2 TraesCS4B01G173800 chr4D 305076439 305077464 1025 False 1600.000000 1600 94.7170 666 1702 1 chr4D.!!$F1 1036
3 TraesCS4B01G173800 chr4D 464077841 464078698 857 False 260.000000 409 91.6385 291 660 2 chr4D.!!$F2 369
4 TraesCS4B01G173800 chr1B 483597929 483598884 955 False 1543.000000 1543 95.8160 1703 2657 1 chr1B.!!$F2 954
5 TraesCS4B01G173800 chr1B 143087060 143087822 762 False 487.500000 828 93.2285 1703 2657 2 chr1B.!!$F3 954
6 TraesCS4B01G173800 chr1B 69572399 69573545 1146 True 387.500000 490 97.2665 2217 2657 2 chr1B.!!$R3 440
7 TraesCS4B01G173800 chr4A 173400681 173402297 1616 False 402.375000 1208 93.5050 666 1702 4 chr4A.!!$F2 1036
8 TraesCS4B01G173800 chr5B 666860336 666861107 771 False 521.500000 896 93.9940 1703 2657 2 chr5B.!!$F3 954
9 TraesCS4B01G173800 chr5B 271783696 271785598 1902 True 360.666667 477 92.9820 1703 2657 3 chr5B.!!$R2 954
10 TraesCS4B01G173800 chr7B 726829493 726830036 543 True 251.000000 300 87.2115 1701 2303 2 chr7B.!!$R2 602
11 TraesCS4B01G173800 chr3D 47882876 47883714 838 False 251.500000 388 91.4425 300 662 2 chr3D.!!$F1 362
12 TraesCS4B01G173800 chr6A 604664104 604664947 843 True 255.500000 392 92.0500 298 661 2 chr6A.!!$R1 363
13 TraesCS4B01G173800 chr6B 93829199 93829831 632 True 286.000000 324 87.9375 1700 2303 2 chr6B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.033781 TTGTACCAGTAGCGCCGTTT 59.966 50.0 2.29 0.00 0.00 3.60 F
196 197 0.033781 ACCAGTAGCGCCGTTTGTAA 59.966 50.0 2.29 0.00 0.00 2.41 F
243 244 0.392336 TTGGGCTCCAAAACACATGC 59.608 50.0 4.37 0.00 40.92 4.06 F
1569 2695 0.445436 GCGATCTGTGCAAGGACTTG 59.555 55.0 7.67 7.67 43.14 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 2504 0.460284 TTCTCCTCTCCAATTCGCGC 60.460 55.000 0.0 0.0 0.00 6.86 R
1527 2653 0.904865 AGAACCGGCAGACCAGATCA 60.905 55.000 0.0 0.0 34.57 2.92 R
1613 2739 1.302271 GAAACTGGTCCCACGTCCC 60.302 63.158 0.0 0.0 0.00 4.46 R
2620 5851 1.079197 ATGCGCGATGACAACCTCA 60.079 52.632 12.1 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.672086 GATTACACATAGAAGAACTAGCTGTAG 57.328 37.037 0.00 0.00 32.95 2.74
27 28 5.897050 ACACATAGAAGAACTAGCTGTAGC 58.103 41.667 0.00 0.00 42.49 3.58
33 34 6.376829 TAGAAGAACTAGCTGTAGCGCTTCT 61.377 44.000 18.68 18.14 44.35 2.85
34 35 7.067210 AGAAGAACTAGCTGTAGCGCTTCTT 62.067 44.000 18.68 15.37 42.10 2.52
35 36 7.795009 AGAAGAACTAGCTGTAGCGCTTCTTA 61.795 42.308 18.68 4.35 42.10 2.10
36 37 9.482627 AGAAGAACTAGCTGTAGCGCTTCTTAG 62.483 44.444 18.68 15.67 42.10 2.18
39 40 1.281899 GCTGTAGCGCTTCTTAGTGG 58.718 55.000 18.68 0.00 32.40 4.00
40 41 1.281899 CTGTAGCGCTTCTTAGTGGC 58.718 55.000 18.68 0.00 32.40 5.01
41 42 0.108329 TGTAGCGCTTCTTAGTGGCC 60.108 55.000 18.68 0.00 32.40 5.36
42 43 0.810426 GTAGCGCTTCTTAGTGGCCC 60.810 60.000 18.68 0.00 32.40 5.80
43 44 1.968050 TAGCGCTTCTTAGTGGCCCC 61.968 60.000 18.68 0.00 32.40 5.80
44 45 2.511600 CGCTTCTTAGTGGCCCCG 60.512 66.667 0.00 0.00 0.00 5.73
45 46 2.824489 GCTTCTTAGTGGCCCCGC 60.824 66.667 0.00 0.00 0.00 6.13
46 47 2.511600 CTTCTTAGTGGCCCCGCG 60.512 66.667 0.00 0.00 0.00 6.46
47 48 4.770874 TTCTTAGTGGCCCCGCGC 62.771 66.667 0.00 0.00 0.00 6.86
49 50 3.845259 CTTAGTGGCCCCGCGCTA 61.845 66.667 5.56 0.00 37.74 4.26
56 57 4.301027 GCCCCGCGCTACTGCTAT 62.301 66.667 5.56 0.00 36.97 2.97
57 58 2.421739 CCCCGCGCTACTGCTATT 59.578 61.111 5.56 0.00 36.97 1.73
58 59 1.227556 CCCCGCGCTACTGCTATTT 60.228 57.895 5.56 0.00 36.97 1.40
59 60 0.814010 CCCCGCGCTACTGCTATTTT 60.814 55.000 5.56 0.00 36.97 1.82
60 61 0.582005 CCCGCGCTACTGCTATTTTC 59.418 55.000 5.56 0.00 36.97 2.29
61 62 1.571919 CCGCGCTACTGCTATTTTCT 58.428 50.000 5.56 0.00 36.97 2.52
62 63 1.933853 CCGCGCTACTGCTATTTTCTT 59.066 47.619 5.56 0.00 36.97 2.52
63 64 3.120792 CCGCGCTACTGCTATTTTCTTA 58.879 45.455 5.56 0.00 36.97 2.10
64 65 3.554324 CCGCGCTACTGCTATTTTCTTAA 59.446 43.478 5.56 0.00 36.97 1.85
65 66 4.506217 CGCGCTACTGCTATTTTCTTAAC 58.494 43.478 5.56 0.00 36.97 2.01
66 67 4.032445 CGCGCTACTGCTATTTTCTTAACA 59.968 41.667 5.56 0.00 36.97 2.41
67 68 5.493735 GCGCTACTGCTATTTTCTTAACAG 58.506 41.667 0.00 0.00 36.97 3.16
68 69 5.063564 GCGCTACTGCTATTTTCTTAACAGT 59.936 40.000 0.00 0.00 41.06 3.55
69 70 6.255020 GCGCTACTGCTATTTTCTTAACAGTA 59.745 38.462 0.00 0.00 39.06 2.74
72 73 6.648725 ACTGCTATTTTCTTAACAGTAGCG 57.351 37.500 0.00 0.00 36.65 4.26
73 74 5.063564 ACTGCTATTTTCTTAACAGTAGCGC 59.936 40.000 0.00 0.00 36.65 5.92
74 75 5.175859 TGCTATTTTCTTAACAGTAGCGCT 58.824 37.500 17.26 17.26 37.85 5.92
75 76 5.642063 TGCTATTTTCTTAACAGTAGCGCTT 59.358 36.000 18.68 0.00 37.85 4.68
76 77 5.960105 GCTATTTTCTTAACAGTAGCGCTTG 59.040 40.000 18.68 12.18 0.00 4.01
77 78 5.941948 ATTTTCTTAACAGTAGCGCTTGT 57.058 34.783 18.68 13.01 0.00 3.16
78 79 5.744666 TTTTCTTAACAGTAGCGCTTGTT 57.255 34.783 25.84 25.84 0.00 2.83
79 80 6.847956 TTTTCTTAACAGTAGCGCTTGTTA 57.152 33.333 24.06 24.06 0.00 2.41
80 81 6.462073 TTTCTTAACAGTAGCGCTTGTTAG 57.538 37.500 25.53 20.72 0.00 2.34
81 82 3.924686 TCTTAACAGTAGCGCTTGTTAGC 59.075 43.478 25.53 8.59 44.21 3.09
98 99 4.883026 CGTACCAACGCTGCTACT 57.117 55.556 0.00 0.00 43.12 2.57
100 101 2.486951 CGTACCAACGCTGCTACTAT 57.513 50.000 0.00 0.00 43.12 2.12
101 102 2.805845 CGTACCAACGCTGCTACTATT 58.194 47.619 0.00 0.00 43.12 1.73
102 103 3.184541 CGTACCAACGCTGCTACTATTT 58.815 45.455 0.00 0.00 43.12 1.40
103 104 3.615496 CGTACCAACGCTGCTACTATTTT 59.385 43.478 0.00 0.00 43.12 1.82
104 105 4.092383 CGTACCAACGCTGCTACTATTTTT 59.908 41.667 0.00 0.00 43.12 1.94
118 119 2.042843 TTTTTGGCCGGGGTGTGT 60.043 55.556 2.18 0.00 0.00 3.72
119 120 2.427245 TTTTTGGCCGGGGTGTGTG 61.427 57.895 2.18 0.00 0.00 3.82
120 121 4.904590 TTTGGCCGGGGTGTGTGG 62.905 66.667 2.18 0.00 0.00 4.17
125 126 4.947147 CCGGGGTGTGTGGTGTGG 62.947 72.222 0.00 0.00 0.00 4.17
127 128 4.204028 GGGGTGTGTGGTGTGGCT 62.204 66.667 0.00 0.00 0.00 4.75
128 129 2.824880 GGGGTGTGTGGTGTGGCTA 61.825 63.158 0.00 0.00 0.00 3.93
129 130 1.149627 GGGTGTGTGGTGTGGCTAA 59.850 57.895 0.00 0.00 0.00 3.09
130 131 1.170290 GGGTGTGTGGTGTGGCTAAC 61.170 60.000 0.00 0.00 0.00 2.34
131 132 0.179029 GGTGTGTGGTGTGGCTAACT 60.179 55.000 0.00 0.00 0.00 2.24
132 133 1.675552 GTGTGTGGTGTGGCTAACTT 58.324 50.000 0.00 0.00 0.00 2.66
133 134 2.485835 GGTGTGTGGTGTGGCTAACTTA 60.486 50.000 0.00 0.00 0.00 2.24
134 135 2.546789 GTGTGTGGTGTGGCTAACTTAC 59.453 50.000 0.00 0.00 0.00 2.34
135 136 2.148768 GTGTGGTGTGGCTAACTTACC 58.851 52.381 0.00 0.00 0.00 2.85
136 137 1.769465 TGTGGTGTGGCTAACTTACCA 59.231 47.619 0.00 0.00 38.98 3.25
137 138 2.224426 TGTGGTGTGGCTAACTTACCAG 60.224 50.000 0.00 0.00 41.67 4.00
138 139 2.051692 TGGTGTGGCTAACTTACCAGT 58.948 47.619 0.00 0.00 36.56 4.00
139 140 3.007182 GTGGTGTGGCTAACTTACCAGTA 59.993 47.826 0.00 0.00 41.67 2.74
140 141 3.259876 TGGTGTGGCTAACTTACCAGTAG 59.740 47.826 0.00 0.00 36.56 2.57
141 142 3.259902 GTGTGGCTAACTTACCAGTAGC 58.740 50.000 0.00 0.00 36.38 3.58
142 143 2.094390 TGTGGCTAACTTACCAGTAGCG 60.094 50.000 0.00 0.00 36.38 4.26
143 144 2.094338 GTGGCTAACTTACCAGTAGCGT 60.094 50.000 0.00 0.00 36.38 5.07
144 145 2.094390 TGGCTAACTTACCAGTAGCGTG 60.094 50.000 0.00 0.00 33.66 5.34
145 146 1.925185 GCTAACTTACCAGTAGCGTGC 59.075 52.381 0.00 0.00 30.68 5.34
146 147 2.537401 CTAACTTACCAGTAGCGTGCC 58.463 52.381 0.00 0.00 30.68 5.01
147 148 0.036671 AACTTACCAGTAGCGTGCCC 60.037 55.000 0.00 0.00 30.68 5.36
148 149 0.903454 ACTTACCAGTAGCGTGCCCT 60.903 55.000 0.00 0.00 0.00 5.19
149 150 0.179108 CTTACCAGTAGCGTGCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
150 151 0.613853 TTACCAGTAGCGTGCCCTCT 60.614 55.000 0.00 0.00 0.00 3.69
151 152 0.256752 TACCAGTAGCGTGCCCTCTA 59.743 55.000 0.00 0.00 0.00 2.43
152 153 1.038130 ACCAGTAGCGTGCCCTCTAG 61.038 60.000 0.00 0.00 0.00 2.43
153 154 0.752009 CCAGTAGCGTGCCCTCTAGA 60.752 60.000 0.00 0.00 0.00 2.43
154 155 1.103803 CAGTAGCGTGCCCTCTAGAA 58.896 55.000 0.00 0.00 0.00 2.10
155 156 1.476891 CAGTAGCGTGCCCTCTAGAAA 59.523 52.381 0.00 0.00 0.00 2.52
156 157 1.477295 AGTAGCGTGCCCTCTAGAAAC 59.523 52.381 0.00 0.00 0.00 2.78
157 158 0.822164 TAGCGTGCCCTCTAGAAACC 59.178 55.000 0.00 0.00 0.00 3.27
158 159 1.192146 AGCGTGCCCTCTAGAAACCA 61.192 55.000 0.00 0.00 0.00 3.67
159 160 0.107654 GCGTGCCCTCTAGAAACCAT 60.108 55.000 0.00 0.00 0.00 3.55
160 161 1.138266 GCGTGCCCTCTAGAAACCATA 59.862 52.381 0.00 0.00 0.00 2.74
161 162 2.803492 GCGTGCCCTCTAGAAACCATAG 60.803 54.545 0.00 0.00 0.00 2.23
162 163 2.803492 CGTGCCCTCTAGAAACCATAGC 60.803 54.545 0.00 0.00 0.00 2.97
163 164 2.436173 GTGCCCTCTAGAAACCATAGCT 59.564 50.000 0.00 0.00 0.00 3.32
164 165 2.435805 TGCCCTCTAGAAACCATAGCTG 59.564 50.000 0.00 0.00 0.00 4.24
165 166 2.808567 GCCCTCTAGAAACCATAGCTGC 60.809 54.545 0.00 0.00 0.00 5.25
166 167 2.703007 CCCTCTAGAAACCATAGCTGCT 59.297 50.000 7.57 7.57 0.00 4.24
167 168 3.494048 CCCTCTAGAAACCATAGCTGCTG 60.494 52.174 13.43 0.00 0.00 4.41
168 169 3.129871 CTCTAGAAACCATAGCTGCTGC 58.870 50.000 13.43 7.62 40.05 5.25
180 181 1.808411 GCTGCTGCTAAGTTGTACCA 58.192 50.000 8.53 0.00 36.03 3.25
181 182 1.734465 GCTGCTGCTAAGTTGTACCAG 59.266 52.381 8.53 0.00 36.03 4.00
182 183 2.872038 GCTGCTGCTAAGTTGTACCAGT 60.872 50.000 8.53 0.00 36.03 4.00
183 184 3.616560 GCTGCTGCTAAGTTGTACCAGTA 60.617 47.826 8.53 0.00 36.03 2.74
184 185 4.177026 CTGCTGCTAAGTTGTACCAGTAG 58.823 47.826 0.00 0.00 31.77 2.57
185 186 2.930682 GCTGCTAAGTTGTACCAGTAGC 59.069 50.000 0.00 7.60 39.09 3.58
186 187 3.179830 CTGCTAAGTTGTACCAGTAGCG 58.820 50.000 9.19 0.00 40.03 4.26
187 188 1.925185 GCTAAGTTGTACCAGTAGCGC 59.075 52.381 0.00 0.00 0.00 5.92
188 189 2.537401 CTAAGTTGTACCAGTAGCGCC 58.463 52.381 2.29 0.00 0.00 6.53
189 190 0.389426 AAGTTGTACCAGTAGCGCCG 60.389 55.000 2.29 0.00 0.00 6.46
190 191 1.080298 GTTGTACCAGTAGCGCCGT 60.080 57.895 2.29 0.00 0.00 5.68
191 192 0.668401 GTTGTACCAGTAGCGCCGTT 60.668 55.000 2.29 0.00 0.00 4.44
192 193 0.033781 TTGTACCAGTAGCGCCGTTT 59.966 50.000 2.29 0.00 0.00 3.60
193 194 0.668096 TGTACCAGTAGCGCCGTTTG 60.668 55.000 2.29 0.00 0.00 2.93
194 195 0.668401 GTACCAGTAGCGCCGTTTGT 60.668 55.000 2.29 0.00 0.00 2.83
195 196 0.887247 TACCAGTAGCGCCGTTTGTA 59.113 50.000 2.29 0.00 0.00 2.41
196 197 0.033781 ACCAGTAGCGCCGTTTGTAA 59.966 50.000 2.29 0.00 0.00 2.41
197 198 0.441145 CCAGTAGCGCCGTTTGTAAC 59.559 55.000 2.29 0.00 0.00 2.50
198 199 1.141645 CAGTAGCGCCGTTTGTAACA 58.858 50.000 2.29 0.00 0.00 2.41
199 200 1.136446 CAGTAGCGCCGTTTGTAACAC 60.136 52.381 2.29 0.00 0.00 3.32
200 201 0.860533 GTAGCGCCGTTTGTAACACA 59.139 50.000 2.29 0.00 0.00 3.72
201 202 0.860533 TAGCGCCGTTTGTAACACAC 59.139 50.000 2.29 0.00 0.00 3.82
202 203 1.090625 AGCGCCGTTTGTAACACACA 61.091 50.000 2.29 0.00 34.51 3.72
203 204 0.926628 GCGCCGTTTGTAACACACAC 60.927 55.000 0.00 0.00 36.69 3.82
204 205 0.653636 CGCCGTTTGTAACACACACT 59.346 50.000 0.00 0.00 36.69 3.55
205 206 1.593551 CGCCGTTTGTAACACACACTG 60.594 52.381 0.00 0.00 36.69 3.66
206 207 1.858399 GCCGTTTGTAACACACACTGC 60.858 52.381 0.00 0.00 36.69 4.40
207 208 1.668751 CCGTTTGTAACACACACTGCT 59.331 47.619 0.00 0.00 36.69 4.24
208 209 2.538737 CCGTTTGTAACACACACTGCTG 60.539 50.000 0.00 0.00 36.69 4.41
209 210 2.450160 GTTTGTAACACACACTGCTGC 58.550 47.619 0.00 0.00 36.69 5.25
210 211 2.036958 TTGTAACACACACTGCTGCT 57.963 45.000 0.00 0.00 36.69 4.24
211 212 2.900716 TGTAACACACACTGCTGCTA 57.099 45.000 0.00 0.00 30.04 3.49
212 213 3.186702 TGTAACACACACTGCTGCTAA 57.813 42.857 0.00 0.00 30.04 3.09
213 214 3.738982 TGTAACACACACTGCTGCTAAT 58.261 40.909 0.00 0.00 30.04 1.73
214 215 4.133820 TGTAACACACACTGCTGCTAATT 58.866 39.130 0.00 0.00 30.04 1.40
215 216 5.301555 TGTAACACACACTGCTGCTAATTA 58.698 37.500 0.00 0.00 30.04 1.40
216 217 5.937540 TGTAACACACACTGCTGCTAATTAT 59.062 36.000 0.00 0.00 30.04 1.28
217 218 7.100409 TGTAACACACACTGCTGCTAATTATA 58.900 34.615 0.00 0.00 30.04 0.98
218 219 7.604545 TGTAACACACACTGCTGCTAATTATAA 59.395 33.333 0.00 0.00 30.04 0.98
219 220 6.668541 ACACACACTGCTGCTAATTATAAG 57.331 37.500 0.00 0.00 0.00 1.73
220 221 6.173339 ACACACACTGCTGCTAATTATAAGT 58.827 36.000 0.00 0.00 0.00 2.24
221 222 7.327975 ACACACACTGCTGCTAATTATAAGTA 58.672 34.615 0.00 0.00 0.00 2.24
222 223 7.492669 ACACACACTGCTGCTAATTATAAGTAG 59.507 37.037 14.22 14.22 0.00 2.57
240 241 2.123409 GCTTGGGCTCCAAAACACA 58.877 52.632 7.87 0.00 43.44 3.72
241 242 0.681175 GCTTGGGCTCCAAAACACAT 59.319 50.000 7.87 0.00 43.44 3.21
242 243 1.606224 GCTTGGGCTCCAAAACACATG 60.606 52.381 7.87 0.00 43.44 3.21
243 244 0.392336 TTGGGCTCCAAAACACATGC 59.608 50.000 4.37 0.00 40.92 4.06
244 245 0.469705 TGGGCTCCAAAACACATGCT 60.470 50.000 0.00 0.00 0.00 3.79
245 246 1.202989 TGGGCTCCAAAACACATGCTA 60.203 47.619 0.00 0.00 0.00 3.49
246 247 1.202348 GGGCTCCAAAACACATGCTAC 59.798 52.381 0.00 0.00 0.00 3.58
247 248 2.162681 GGCTCCAAAACACATGCTACT 58.837 47.619 0.00 0.00 0.00 2.57
248 249 2.095059 GGCTCCAAAACACATGCTACTG 60.095 50.000 0.00 0.00 0.00 2.74
249 250 2.095059 GCTCCAAAACACATGCTACTGG 60.095 50.000 0.00 0.00 0.00 4.00
250 251 3.149196 CTCCAAAACACATGCTACTGGT 58.851 45.455 0.00 0.00 0.00 4.00
251 252 4.323417 CTCCAAAACACATGCTACTGGTA 58.677 43.478 0.00 0.00 0.00 3.25
252 253 4.720046 TCCAAAACACATGCTACTGGTAA 58.280 39.130 0.00 0.00 0.00 2.85
253 254 4.517453 TCCAAAACACATGCTACTGGTAAC 59.483 41.667 0.00 0.00 0.00 2.50
254 255 4.518970 CCAAAACACATGCTACTGGTAACT 59.481 41.667 0.00 0.00 37.61 2.24
255 256 5.009610 CCAAAACACATGCTACTGGTAACTT 59.990 40.000 0.00 0.00 37.61 2.66
256 257 5.941948 AAACACATGCTACTGGTAACTTC 57.058 39.130 0.00 0.00 37.61 3.01
257 258 4.891992 ACACATGCTACTGGTAACTTCT 57.108 40.909 0.00 0.00 37.61 2.85
258 259 5.995565 ACACATGCTACTGGTAACTTCTA 57.004 39.130 0.00 0.00 37.61 2.10
259 260 6.546428 ACACATGCTACTGGTAACTTCTAT 57.454 37.500 0.00 0.00 37.61 1.98
260 261 6.341316 ACACATGCTACTGGTAACTTCTATG 58.659 40.000 0.00 0.00 37.61 2.23
261 262 6.070767 ACACATGCTACTGGTAACTTCTATGT 60.071 38.462 0.00 0.00 37.61 2.29
262 263 7.123697 ACACATGCTACTGGTAACTTCTATGTA 59.876 37.037 0.00 0.00 37.61 2.29
263 264 8.144478 CACATGCTACTGGTAACTTCTATGTAT 58.856 37.037 0.00 0.00 37.61 2.29
264 265 9.363401 ACATGCTACTGGTAACTTCTATGTATA 57.637 33.333 0.00 0.00 37.61 1.47
267 268 8.358148 TGCTACTGGTAACTTCTATGTATAAGC 58.642 37.037 0.00 0.00 37.61 3.09
268 269 7.813627 GCTACTGGTAACTTCTATGTATAAGCC 59.186 40.741 0.00 0.00 37.61 4.35
269 270 7.916077 ACTGGTAACTTCTATGTATAAGCCT 57.084 36.000 0.00 0.00 37.61 4.58
270 271 8.320338 ACTGGTAACTTCTATGTATAAGCCTT 57.680 34.615 0.00 0.00 37.61 4.35
271 272 8.769359 ACTGGTAACTTCTATGTATAAGCCTTT 58.231 33.333 0.00 0.00 37.61 3.11
272 273 9.614792 CTGGTAACTTCTATGTATAAGCCTTTT 57.385 33.333 0.00 0.00 37.61 2.27
273 274 9.609346 TGGTAACTTCTATGTATAAGCCTTTTC 57.391 33.333 0.00 0.00 37.61 2.29
274 275 9.053840 GGTAACTTCTATGTATAAGCCTTTTCC 57.946 37.037 0.00 0.00 0.00 3.13
275 276 9.833917 GTAACTTCTATGTATAAGCCTTTTCCT 57.166 33.333 0.00 0.00 0.00 3.36
278 279 9.214962 ACTTCTATGTATAAGCCTTTTCCTAGT 57.785 33.333 0.00 0.00 0.00 2.57
281 282 9.878737 TCTATGTATAAGCCTTTTCCTAGTAGT 57.121 33.333 0.00 0.00 0.00 2.73
282 283 9.915629 CTATGTATAAGCCTTTTCCTAGTAGTG 57.084 37.037 0.00 0.00 0.00 2.74
283 284 7.729124 TGTATAAGCCTTTTCCTAGTAGTGT 57.271 36.000 0.00 0.00 0.00 3.55
284 285 8.142485 TGTATAAGCCTTTTCCTAGTAGTGTT 57.858 34.615 0.00 0.00 0.00 3.32
285 286 8.599792 TGTATAAGCCTTTTCCTAGTAGTGTTT 58.400 33.333 0.00 0.00 0.00 2.83
286 287 9.445878 GTATAAGCCTTTTCCTAGTAGTGTTTT 57.554 33.333 0.00 0.00 0.00 2.43
287 288 6.879276 AAGCCTTTTCCTAGTAGTGTTTTC 57.121 37.500 0.00 0.00 0.00 2.29
288 289 5.314529 AGCCTTTTCCTAGTAGTGTTTTCC 58.685 41.667 0.00 0.00 0.00 3.13
289 290 5.073280 AGCCTTTTCCTAGTAGTGTTTTCCT 59.927 40.000 0.00 0.00 0.00 3.36
290 291 5.768662 GCCTTTTCCTAGTAGTGTTTTCCTT 59.231 40.000 0.00 0.00 0.00 3.36
291 292 6.938596 GCCTTTTCCTAGTAGTGTTTTCCTTA 59.061 38.462 0.00 0.00 0.00 2.69
292 293 7.446319 GCCTTTTCCTAGTAGTGTTTTCCTTAA 59.554 37.037 0.00 0.00 0.00 1.85
293 294 9.516546 CCTTTTCCTAGTAGTGTTTTCCTTAAT 57.483 33.333 0.00 0.00 0.00 1.40
430 432 6.918067 ATACCACATCCGAATCATAGAGAA 57.082 37.500 0.00 0.00 0.00 2.87
438 440 3.815962 CCGAATCATAGAGAAGACGAGGA 59.184 47.826 0.00 0.00 0.00 3.71
446 448 2.033141 AAGACGAGGACCGACGGA 59.967 61.111 23.38 0.00 41.76 4.69
465 468 2.639065 GAGCGGATACCAAAACCATGA 58.361 47.619 0.00 0.00 0.00 3.07
581 584 5.976458 AGAAGATAAGAACAAGAGGCTCAG 58.024 41.667 18.26 11.28 0.00 3.35
621 1115 3.933861 AGAGAACCGGGATTAATGCTT 57.066 42.857 6.32 0.00 0.00 3.91
630 1124 4.827284 CCGGGATTAATGCTTTTATCTGGT 59.173 41.667 6.93 0.00 0.00 4.00
633 1127 6.073003 CGGGATTAATGCTTTTATCTGGTCTC 60.073 42.308 6.93 0.00 0.00 3.36
647 1141 2.035442 GTCTCGACCAAAGCCCTGC 61.035 63.158 0.00 0.00 0.00 4.85
662 1156 1.134371 CCCTGCTTTCTACTAGTGGGC 60.134 57.143 5.39 2.21 0.00 5.36
663 1157 1.555075 CCTGCTTTCTACTAGTGGGCA 59.445 52.381 5.39 7.05 0.00 5.36
664 1158 2.171448 CCTGCTTTCTACTAGTGGGCAT 59.829 50.000 5.39 0.00 0.00 4.40
681 1175 2.017049 GCATAGTCAATTTCCGGCAGT 58.983 47.619 0.00 0.00 0.00 4.40
684 1178 1.523758 AGTCAATTTCCGGCAGTCAC 58.476 50.000 0.00 0.00 0.00 3.67
738 1279 8.715088 GGTAAATTTTCGAACTATATATGCCGT 58.285 33.333 0.00 0.00 0.00 5.68
789 1911 1.491670 CTATGCTTAGTGCGACGCAT 58.508 50.000 27.23 16.70 46.63 4.73
798 1920 0.786581 GTGCGACGCATGATCATAGG 59.213 55.000 27.23 5.77 41.91 2.57
801 1923 1.336332 GCGACGCATGATCATAGGACT 60.336 52.381 16.42 0.00 0.00 3.85
802 1924 2.323059 CGACGCATGATCATAGGACTG 58.677 52.381 8.15 0.00 0.00 3.51
803 1925 2.064762 GACGCATGATCATAGGACTGC 58.935 52.381 8.15 7.27 0.00 4.40
804 1926 1.270518 ACGCATGATCATAGGACTGCC 60.271 52.381 8.15 0.00 0.00 4.85
805 1927 1.270465 CGCATGATCATAGGACTGCCA 60.270 52.381 8.15 0.00 36.29 4.92
806 1928 2.149578 GCATGATCATAGGACTGCCAC 58.850 52.381 8.15 0.00 36.29 5.01
807 1929 2.410939 CATGATCATAGGACTGCCACG 58.589 52.381 8.15 0.00 36.29 4.94
808 1930 0.752658 TGATCATAGGACTGCCACGG 59.247 55.000 0.00 0.00 36.29 4.94
827 1949 0.608308 GTGCCACCCCACTAAAGACC 60.608 60.000 0.00 0.00 33.02 3.85
862 1984 1.031235 CCACAACCATGCAACAGTCA 58.969 50.000 0.00 0.00 0.00 3.41
907 2029 9.825109 GCCTCTCTCTTATGAAATACTAACTTT 57.175 33.333 0.00 0.00 0.00 2.66
932 2054 7.144000 TCATCGATGTCTCATTCTACATCTTG 58.856 38.462 24.09 9.90 46.36 3.02
952 2078 2.033194 GTGGCAGCACGAGGTAACC 61.033 63.158 0.00 0.00 37.17 2.85
1028 2154 1.861575 CTCGTCTCGATCGTCTCATCA 59.138 52.381 15.94 0.00 34.61 3.07
1276 2402 3.588742 TCGACAGAGAGCCATACCA 57.411 52.632 0.00 0.00 0.00 3.25
1278 2404 0.817654 CGACAGAGAGCCATACCACA 59.182 55.000 0.00 0.00 0.00 4.17
1302 2428 2.125832 GTAGTTGCTGCGGCGGTA 60.126 61.111 13.96 2.43 42.25 4.02
1454 2580 2.903784 TGGAGATTTTGACGGAGGAAGA 59.096 45.455 0.00 0.00 0.00 2.87
1503 2629 0.834687 AACTCCTACCGTGCTGGGAA 60.835 55.000 0.39 0.00 44.64 3.97
1527 2653 2.107546 AAGTCGCCGGTGTTCGTT 59.892 55.556 16.01 1.58 37.11 3.85
1569 2695 0.445436 GCGATCTGTGCAAGGACTTG 59.555 55.000 7.67 7.67 43.14 3.16
1585 2711 2.788191 CTTGTTCTCCTCCGCCGCTT 62.788 60.000 0.00 0.00 0.00 4.68
1742 2868 5.067805 GGGTCATTGAAGTTGAGTCAAAAGT 59.932 40.000 7.25 0.00 38.44 2.66
1760 2886 6.932400 TCAAAAGTACAATACGGTCACTGAAT 59.068 34.615 0.00 0.00 0.00 2.57
1783 2909 2.162208 TCAGAATACGCTCGTTACGGTT 59.838 45.455 4.53 0.00 34.00 4.44
1890 3021 7.619965 TCTACATGACATTCAATTGACTGGTA 58.380 34.615 24.54 16.68 0.00 3.25
1946 3080 0.042581 TGGGCCCATCTGTCAGTAGA 59.957 55.000 24.45 0.00 0.00 2.59
1970 3104 9.280174 AGACGGAAGAAATATAAACAAGAAACA 57.720 29.630 0.00 0.00 0.00 2.83
2086 3287 2.979813 GTTCATTGAAAATGAAGCGCGT 59.020 40.909 14.11 0.00 38.54 6.01
2450 5681 6.088483 CACATTTAAGCATGACATCACACAAC 59.912 38.462 0.00 0.00 0.00 3.32
2620 5851 6.485171 AGCTAGGTGTCAGAAAATAAACCAT 58.515 36.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.672086 CTACAGCTAGTTCTTCTATGTGTAATC 57.328 37.037 0.00 0.00 31.86 1.75
2 3 7.481642 GCTACAGCTAGTTCTTCTATGTGTAA 58.518 38.462 0.00 0.00 38.21 2.41
3 4 6.238402 CGCTACAGCTAGTTCTTCTATGTGTA 60.238 42.308 0.00 0.00 39.32 2.90
5 6 4.973051 CGCTACAGCTAGTTCTTCTATGTG 59.027 45.833 0.00 0.00 39.32 3.21
6 7 4.498345 GCGCTACAGCTAGTTCTTCTATGT 60.498 45.833 0.00 0.00 39.32 2.29
7 8 3.978217 GCGCTACAGCTAGTTCTTCTATG 59.022 47.826 0.00 0.00 39.32 2.23
8 9 4.231718 GCGCTACAGCTAGTTCTTCTAT 57.768 45.455 0.00 0.00 39.32 1.98
9 10 3.694535 GCGCTACAGCTAGTTCTTCTA 57.305 47.619 0.00 0.00 39.32 2.10
10 11 2.570442 GCGCTACAGCTAGTTCTTCT 57.430 50.000 0.00 0.00 39.32 2.85
20 21 1.281899 CCACTAAGAAGCGCTACAGC 58.718 55.000 12.05 0.04 37.78 4.40
21 22 1.281899 GCCACTAAGAAGCGCTACAG 58.718 55.000 12.05 8.18 0.00 2.74
22 23 0.108329 GGCCACTAAGAAGCGCTACA 60.108 55.000 12.05 0.00 0.00 2.74
23 24 0.810426 GGGCCACTAAGAAGCGCTAC 60.810 60.000 12.05 0.00 36.60 3.58
24 25 1.520666 GGGCCACTAAGAAGCGCTA 59.479 57.895 12.05 0.00 36.60 4.26
25 26 2.269241 GGGCCACTAAGAAGCGCT 59.731 61.111 2.64 2.64 36.60 5.92
26 27 2.824489 GGGGCCACTAAGAAGCGC 60.824 66.667 4.39 0.00 38.62 5.92
27 28 2.511600 CGGGGCCACTAAGAAGCG 60.512 66.667 1.96 0.00 0.00 4.68
28 29 2.824489 GCGGGGCCACTAAGAAGC 60.824 66.667 1.96 0.00 0.00 3.86
29 30 2.511600 CGCGGGGCCACTAAGAAG 60.512 66.667 1.96 0.00 0.00 2.85
30 31 4.770874 GCGCGGGGCCACTAAGAA 62.771 66.667 8.83 0.00 34.80 2.52
32 33 3.845259 TAGCGCGGGGCCACTAAG 61.845 66.667 13.87 0.00 45.17 2.18
33 34 4.151582 GTAGCGCGGGGCCACTAA 62.152 66.667 13.87 0.00 45.17 2.24
43 44 8.082850 ACTGTTAAGAAAATAGCAGTAGCGCG 62.083 42.308 0.00 0.00 43.00 6.86
44 45 5.063564 ACTGTTAAGAAAATAGCAGTAGCGC 59.936 40.000 0.00 0.00 43.00 5.92
45 46 6.648725 ACTGTTAAGAAAATAGCAGTAGCG 57.351 37.500 2.56 0.00 43.00 4.26
48 49 6.255020 GCGCTACTGTTAAGAAAATAGCAGTA 59.745 38.462 0.00 9.60 43.00 2.74
49 50 5.063564 GCGCTACTGTTAAGAAAATAGCAGT 59.936 40.000 0.00 8.50 45.51 4.40
50 51 5.292101 AGCGCTACTGTTAAGAAAATAGCAG 59.708 40.000 8.99 0.00 39.28 4.24
51 52 5.175859 AGCGCTACTGTTAAGAAAATAGCA 58.824 37.500 8.99 0.00 35.79 3.49
52 53 5.720261 AGCGCTACTGTTAAGAAAATAGC 57.280 39.130 8.99 0.00 33.31 2.97
53 54 7.061752 ACAAGCGCTACTGTTAAGAAAATAG 57.938 36.000 12.05 0.00 0.00 1.73
54 55 7.429636 AACAAGCGCTACTGTTAAGAAAATA 57.570 32.000 22.58 0.00 0.00 1.40
55 56 5.941948 ACAAGCGCTACTGTTAAGAAAAT 57.058 34.783 12.05 0.00 0.00 1.82
56 57 5.744666 AACAAGCGCTACTGTTAAGAAAA 57.255 34.783 22.58 0.00 0.00 2.29
57 58 5.107220 GCTAACAAGCGCTACTGTTAAGAAA 60.107 40.000 26.38 12.79 0.00 2.52
58 59 4.387862 GCTAACAAGCGCTACTGTTAAGAA 59.612 41.667 26.38 13.08 0.00 2.52
59 60 3.924686 GCTAACAAGCGCTACTGTTAAGA 59.075 43.478 26.38 13.36 0.00 2.10
60 61 4.246409 GCTAACAAGCGCTACTGTTAAG 57.754 45.455 26.38 21.59 0.00 1.85
72 73 3.941194 CGTTGGTACGCTAACAAGC 57.059 52.632 6.95 0.00 41.41 4.01
101 102 2.042843 ACACACCCCGGCCAAAAA 60.043 55.556 2.24 0.00 0.00 1.94
102 103 2.835431 CACACACCCCGGCCAAAA 60.835 61.111 2.24 0.00 0.00 2.44
103 104 4.904590 CCACACACCCCGGCCAAA 62.905 66.667 2.24 0.00 0.00 3.28
108 109 4.947147 CCACACCACACACCCCGG 62.947 72.222 0.00 0.00 0.00 5.73
110 111 2.346284 TTAGCCACACCACACACCCC 62.346 60.000 0.00 0.00 0.00 4.95
111 112 1.149627 TTAGCCACACCACACACCC 59.850 57.895 0.00 0.00 0.00 4.61
112 113 0.179029 AGTTAGCCACACCACACACC 60.179 55.000 0.00 0.00 0.00 4.16
113 114 1.675552 AAGTTAGCCACACCACACAC 58.324 50.000 0.00 0.00 0.00 3.82
114 115 2.485835 GGTAAGTTAGCCACACCACACA 60.486 50.000 0.34 0.00 0.00 3.72
115 116 2.148768 GGTAAGTTAGCCACACCACAC 58.851 52.381 0.34 0.00 0.00 3.82
116 117 1.769465 TGGTAAGTTAGCCACACCACA 59.231 47.619 9.51 0.00 34.40 4.17
117 118 2.224450 ACTGGTAAGTTAGCCACACCAC 60.224 50.000 9.51 0.00 35.48 4.16
118 119 2.051692 ACTGGTAAGTTAGCCACACCA 58.948 47.619 9.51 1.45 37.68 4.17
119 120 2.853235 ACTGGTAAGTTAGCCACACC 57.147 50.000 9.51 0.00 30.14 4.16
120 121 3.259902 GCTACTGGTAAGTTAGCCACAC 58.740 50.000 9.51 0.00 37.88 3.82
121 122 2.094390 CGCTACTGGTAAGTTAGCCACA 60.094 50.000 9.51 0.00 37.88 4.17
122 123 2.094338 ACGCTACTGGTAAGTTAGCCAC 60.094 50.000 9.51 0.00 37.88 5.01
123 124 2.094390 CACGCTACTGGTAAGTTAGCCA 60.094 50.000 9.51 6.79 37.88 4.75
124 125 2.537401 CACGCTACTGGTAAGTTAGCC 58.463 52.381 9.51 2.65 37.88 3.93
125 126 1.925185 GCACGCTACTGGTAAGTTAGC 59.075 52.381 5.11 5.11 37.88 3.09
126 127 2.537401 GGCACGCTACTGGTAAGTTAG 58.463 52.381 0.00 0.00 37.88 2.34
127 128 1.205417 GGGCACGCTACTGGTAAGTTA 59.795 52.381 0.00 0.00 37.88 2.24
128 129 0.036671 GGGCACGCTACTGGTAAGTT 60.037 55.000 0.00 0.00 37.88 2.66
129 130 0.903454 AGGGCACGCTACTGGTAAGT 60.903 55.000 0.00 0.00 40.67 2.24
130 131 0.179108 GAGGGCACGCTACTGGTAAG 60.179 60.000 0.00 0.00 0.00 2.34
131 132 0.613853 AGAGGGCACGCTACTGGTAA 60.614 55.000 0.00 0.00 0.00 2.85
132 133 0.256752 TAGAGGGCACGCTACTGGTA 59.743 55.000 0.00 0.00 0.00 3.25
133 134 1.000019 TAGAGGGCACGCTACTGGT 60.000 57.895 0.00 0.00 0.00 4.00
134 135 0.752009 TCTAGAGGGCACGCTACTGG 60.752 60.000 0.00 0.00 0.00 4.00
135 136 1.103803 TTCTAGAGGGCACGCTACTG 58.896 55.000 0.00 0.00 0.00 2.74
136 137 1.477295 GTTTCTAGAGGGCACGCTACT 59.523 52.381 0.00 0.00 0.00 2.57
137 138 1.471153 GGTTTCTAGAGGGCACGCTAC 60.471 57.143 0.00 0.00 0.00 3.58
138 139 0.822164 GGTTTCTAGAGGGCACGCTA 59.178 55.000 0.00 0.00 0.00 4.26
139 140 1.192146 TGGTTTCTAGAGGGCACGCT 61.192 55.000 0.00 0.00 0.00 5.07
140 141 0.107654 ATGGTTTCTAGAGGGCACGC 60.108 55.000 0.00 0.00 0.00 5.34
141 142 2.803492 GCTATGGTTTCTAGAGGGCACG 60.803 54.545 0.00 0.00 0.00 5.34
142 143 2.436173 AGCTATGGTTTCTAGAGGGCAC 59.564 50.000 0.00 0.00 0.00 5.01
143 144 2.435805 CAGCTATGGTTTCTAGAGGGCA 59.564 50.000 0.00 0.00 0.00 5.36
144 145 2.808567 GCAGCTATGGTTTCTAGAGGGC 60.809 54.545 0.00 0.00 0.00 5.19
145 146 2.703007 AGCAGCTATGGTTTCTAGAGGG 59.297 50.000 0.00 0.00 31.66 4.30
146 147 3.726607 CAGCAGCTATGGTTTCTAGAGG 58.273 50.000 0.00 0.00 34.07 3.69
147 148 3.129871 GCAGCAGCTATGGTTTCTAGAG 58.870 50.000 0.00 0.00 34.07 2.43
148 149 3.185246 GCAGCAGCTATGGTTTCTAGA 57.815 47.619 0.00 0.00 34.07 2.43
156 157 7.872962 TGGTACAACTTAGCAGCAGCTATGG 62.873 48.000 22.43 15.78 44.91 2.74
157 158 4.919352 TGGTACAACTTAGCAGCAGCTATG 60.919 45.833 18.64 18.64 44.91 2.23
158 159 3.197766 TGGTACAACTTAGCAGCAGCTAT 59.802 43.478 11.98 0.00 44.91 2.97
159 160 2.565391 TGGTACAACTTAGCAGCAGCTA 59.435 45.455 6.74 6.74 43.82 3.32
160 161 1.347707 TGGTACAACTTAGCAGCAGCT 59.652 47.619 9.18 9.18 46.76 4.24
161 162 1.734465 CTGGTACAACTTAGCAGCAGC 59.266 52.381 0.00 0.00 38.70 5.25
162 163 3.045601 ACTGGTACAACTTAGCAGCAG 57.954 47.619 9.79 0.00 44.32 4.24
163 164 3.616560 GCTACTGGTACAACTTAGCAGCA 60.617 47.826 9.79 0.00 44.32 4.41
164 165 2.930682 GCTACTGGTACAACTTAGCAGC 59.069 50.000 9.79 0.00 44.32 5.25
165 166 3.179830 CGCTACTGGTACAACTTAGCAG 58.820 50.000 8.57 8.57 45.51 4.24
166 167 2.673043 GCGCTACTGGTACAACTTAGCA 60.673 50.000 0.00 0.00 39.68 3.49
167 168 1.925185 GCGCTACTGGTACAACTTAGC 59.075 52.381 0.00 0.33 38.70 3.09
168 169 2.537401 GGCGCTACTGGTACAACTTAG 58.463 52.381 7.64 0.00 38.70 2.18
169 170 1.135315 CGGCGCTACTGGTACAACTTA 60.135 52.381 7.64 0.00 38.70 2.24
170 171 0.389426 CGGCGCTACTGGTACAACTT 60.389 55.000 7.64 0.00 38.70 2.66
171 172 1.214589 CGGCGCTACTGGTACAACT 59.785 57.895 7.64 0.00 38.70 3.16
172 173 0.668401 AACGGCGCTACTGGTACAAC 60.668 55.000 6.90 0.00 38.70 3.32
173 174 0.033781 AAACGGCGCTACTGGTACAA 59.966 50.000 6.90 0.00 38.70 2.41
174 175 0.668096 CAAACGGCGCTACTGGTACA 60.668 55.000 6.90 0.00 0.00 2.90
175 176 0.668401 ACAAACGGCGCTACTGGTAC 60.668 55.000 6.90 0.00 0.00 3.34
176 177 0.887247 TACAAACGGCGCTACTGGTA 59.113 50.000 6.90 2.38 0.00 3.25
177 178 0.033781 TTACAAACGGCGCTACTGGT 59.966 50.000 6.90 3.45 0.00 4.00
178 179 0.441145 GTTACAAACGGCGCTACTGG 59.559 55.000 6.90 0.00 0.00 4.00
179 180 1.136446 GTGTTACAAACGGCGCTACTG 60.136 52.381 6.90 1.22 0.00 2.74
180 181 1.142474 GTGTTACAAACGGCGCTACT 58.858 50.000 6.90 0.00 0.00 2.57
181 182 0.860533 TGTGTTACAAACGGCGCTAC 59.139 50.000 6.90 0.00 0.00 3.58
182 183 0.860533 GTGTGTTACAAACGGCGCTA 59.139 50.000 6.90 0.00 0.00 4.26
183 184 1.090625 TGTGTGTTACAAACGGCGCT 61.091 50.000 6.90 0.00 36.06 5.92
184 185 0.926628 GTGTGTGTTACAAACGGCGC 60.927 55.000 6.90 0.00 41.89 6.53
185 186 0.653636 AGTGTGTGTTACAAACGGCG 59.346 50.000 4.80 4.80 41.18 6.46
186 187 1.858399 GCAGTGTGTGTTACAAACGGC 60.858 52.381 10.70 10.70 46.83 5.68
187 188 1.668751 AGCAGTGTGTGTTACAAACGG 59.331 47.619 0.89 0.00 41.18 4.44
188 189 2.704037 CAGCAGTGTGTGTTACAAACG 58.296 47.619 0.89 0.00 41.18 3.60
189 190 2.097466 AGCAGCAGTGTGTGTTACAAAC 59.903 45.455 0.00 0.00 41.89 2.93
190 191 2.364632 AGCAGCAGTGTGTGTTACAAA 58.635 42.857 0.00 0.00 41.89 2.83
191 192 2.036958 AGCAGCAGTGTGTGTTACAA 57.963 45.000 0.00 0.00 41.89 2.41
192 193 2.900716 TAGCAGCAGTGTGTGTTACA 57.099 45.000 0.00 0.00 36.82 2.41
193 194 4.749245 AATTAGCAGCAGTGTGTGTTAC 57.251 40.909 0.00 0.00 0.00 2.50
194 195 7.822334 ACTTATAATTAGCAGCAGTGTGTGTTA 59.178 33.333 0.00 0.00 0.00 2.41
195 196 6.655003 ACTTATAATTAGCAGCAGTGTGTGTT 59.345 34.615 0.00 0.00 0.00 3.32
196 197 6.173339 ACTTATAATTAGCAGCAGTGTGTGT 58.827 36.000 0.00 0.00 0.00 3.72
197 198 6.668541 ACTTATAATTAGCAGCAGTGTGTG 57.331 37.500 0.00 0.00 0.00 3.82
198 199 6.480320 GCTACTTATAATTAGCAGCAGTGTGT 59.520 38.462 23.00 0.98 40.48 3.72
199 200 6.703607 AGCTACTTATAATTAGCAGCAGTGTG 59.296 38.462 27.15 0.00 42.78 3.82
200 201 6.821388 AGCTACTTATAATTAGCAGCAGTGT 58.179 36.000 27.15 9.87 42.78 3.55
201 202 7.307632 CCAAGCTACTTATAATTAGCAGCAGTG 60.308 40.741 27.15 18.39 42.78 3.66
202 203 6.708054 CCAAGCTACTTATAATTAGCAGCAGT 59.292 38.462 27.15 10.97 42.78 4.40
203 204 6.148480 CCCAAGCTACTTATAATTAGCAGCAG 59.852 42.308 27.15 16.92 42.78 4.24
204 205 5.997746 CCCAAGCTACTTATAATTAGCAGCA 59.002 40.000 27.15 0.00 42.78 4.41
205 206 5.106515 GCCCAAGCTACTTATAATTAGCAGC 60.107 44.000 27.15 21.15 42.78 5.25
206 207 6.487689 GCCCAAGCTACTTATAATTAGCAG 57.512 41.667 27.15 20.66 42.78 4.24
222 223 0.681175 ATGTGTTTTGGAGCCCAAGC 59.319 50.000 6.73 5.59 44.84 4.01
223 224 1.606224 GCATGTGTTTTGGAGCCCAAG 60.606 52.381 6.73 0.00 44.84 3.61
224 225 0.392336 GCATGTGTTTTGGAGCCCAA 59.608 50.000 2.84 2.84 42.29 4.12
225 226 0.469705 AGCATGTGTTTTGGAGCCCA 60.470 50.000 0.00 0.00 0.00 5.36
226 227 1.202348 GTAGCATGTGTTTTGGAGCCC 59.798 52.381 0.00 0.00 0.00 5.19
227 228 2.095059 CAGTAGCATGTGTTTTGGAGCC 60.095 50.000 0.00 0.00 0.00 4.70
228 229 2.095059 CCAGTAGCATGTGTTTTGGAGC 60.095 50.000 0.00 0.00 0.00 4.70
229 230 3.149196 ACCAGTAGCATGTGTTTTGGAG 58.851 45.455 10.83 0.00 0.00 3.86
230 231 3.222173 ACCAGTAGCATGTGTTTTGGA 57.778 42.857 10.83 0.00 0.00 3.53
231 232 4.518970 AGTTACCAGTAGCATGTGTTTTGG 59.481 41.667 0.00 0.00 0.00 3.28
232 233 5.689383 AGTTACCAGTAGCATGTGTTTTG 57.311 39.130 0.00 0.00 0.00 2.44
233 234 6.062095 AGAAGTTACCAGTAGCATGTGTTTT 58.938 36.000 0.00 0.00 0.00 2.43
234 235 5.621193 AGAAGTTACCAGTAGCATGTGTTT 58.379 37.500 0.00 0.00 0.00 2.83
235 236 5.228945 AGAAGTTACCAGTAGCATGTGTT 57.771 39.130 0.00 0.00 0.00 3.32
236 237 4.891992 AGAAGTTACCAGTAGCATGTGT 57.108 40.909 0.00 0.00 0.00 3.72
237 238 6.341316 ACATAGAAGTTACCAGTAGCATGTG 58.659 40.000 0.00 0.00 0.00 3.21
238 239 6.546428 ACATAGAAGTTACCAGTAGCATGT 57.454 37.500 0.00 0.00 0.00 3.21
241 242 8.358148 GCTTATACATAGAAGTTACCAGTAGCA 58.642 37.037 0.00 0.00 0.00 3.49
242 243 7.813627 GGCTTATACATAGAAGTTACCAGTAGC 59.186 40.741 0.00 0.00 0.00 3.58
243 244 9.080097 AGGCTTATACATAGAAGTTACCAGTAG 57.920 37.037 0.00 0.00 0.00 2.57
244 245 9.430399 AAGGCTTATACATAGAAGTTACCAGTA 57.570 33.333 0.00 0.00 0.00 2.74
245 246 7.916077 AGGCTTATACATAGAAGTTACCAGT 57.084 36.000 0.00 0.00 0.00 4.00
246 247 9.614792 AAAAGGCTTATACATAGAAGTTACCAG 57.385 33.333 0.00 0.00 0.00 4.00
247 248 9.609346 GAAAAGGCTTATACATAGAAGTTACCA 57.391 33.333 0.00 0.00 0.00 3.25
248 249 9.053840 GGAAAAGGCTTATACATAGAAGTTACC 57.946 37.037 0.00 0.00 0.00 2.85
249 250 9.833917 AGGAAAAGGCTTATACATAGAAGTTAC 57.166 33.333 0.00 0.00 0.00 2.50
252 253 9.214962 ACTAGGAAAAGGCTTATACATAGAAGT 57.785 33.333 18.92 6.39 0.00 3.01
255 256 9.878737 ACTACTAGGAAAAGGCTTATACATAGA 57.121 33.333 18.92 8.22 0.00 1.98
256 257 9.915629 CACTACTAGGAAAAGGCTTATACATAG 57.084 37.037 0.00 8.93 0.00 2.23
257 258 9.430399 ACACTACTAGGAAAAGGCTTATACATA 57.570 33.333 0.00 0.00 0.00 2.29
258 259 8.320338 ACACTACTAGGAAAAGGCTTATACAT 57.680 34.615 0.00 0.00 0.00 2.29
259 260 7.729124 ACACTACTAGGAAAAGGCTTATACA 57.271 36.000 0.00 0.00 0.00 2.29
260 261 9.445878 AAAACACTACTAGGAAAAGGCTTATAC 57.554 33.333 0.00 0.00 0.00 1.47
261 262 9.662947 GAAAACACTACTAGGAAAAGGCTTATA 57.337 33.333 0.00 0.00 0.00 0.98
262 263 7.610692 GGAAAACACTACTAGGAAAAGGCTTAT 59.389 37.037 0.00 0.00 0.00 1.73
263 264 6.938596 GGAAAACACTACTAGGAAAAGGCTTA 59.061 38.462 0.00 0.00 0.00 3.09
264 265 5.768662 GGAAAACACTACTAGGAAAAGGCTT 59.231 40.000 0.00 0.00 0.00 4.35
265 266 5.073280 AGGAAAACACTACTAGGAAAAGGCT 59.927 40.000 0.00 0.00 0.00 4.58
266 267 5.314529 AGGAAAACACTACTAGGAAAAGGC 58.685 41.667 0.00 0.00 0.00 4.35
267 268 8.913487 TTAAGGAAAACACTACTAGGAAAAGG 57.087 34.615 0.00 0.00 0.00 3.11
272 273 8.755977 CCACTATTAAGGAAAACACTACTAGGA 58.244 37.037 0.00 0.00 0.00 2.94
273 274 8.537858 ACCACTATTAAGGAAAACACTACTAGG 58.462 37.037 0.00 0.00 0.00 3.02
274 275 9.583765 GACCACTATTAAGGAAAACACTACTAG 57.416 37.037 0.00 0.00 0.00 2.57
275 276 8.246180 CGACCACTATTAAGGAAAACACTACTA 58.754 37.037 0.00 0.00 0.00 1.82
276 277 7.095270 CGACCACTATTAAGGAAAACACTACT 58.905 38.462 0.00 0.00 0.00 2.57
277 278 6.312180 CCGACCACTATTAAGGAAAACACTAC 59.688 42.308 0.00 0.00 0.00 2.73
278 279 6.014327 ACCGACCACTATTAAGGAAAACACTA 60.014 38.462 0.00 0.00 0.00 2.74
279 280 5.221783 ACCGACCACTATTAAGGAAAACACT 60.222 40.000 0.00 0.00 0.00 3.55
280 281 4.999311 ACCGACCACTATTAAGGAAAACAC 59.001 41.667 0.00 0.00 0.00 3.32
281 282 5.231702 ACCGACCACTATTAAGGAAAACA 57.768 39.130 0.00 0.00 0.00 2.83
282 283 5.106436 CCAACCGACCACTATTAAGGAAAAC 60.106 44.000 0.00 0.00 0.00 2.43
283 284 5.005094 CCAACCGACCACTATTAAGGAAAA 58.995 41.667 0.00 0.00 0.00 2.29
284 285 4.286549 TCCAACCGACCACTATTAAGGAAA 59.713 41.667 0.00 0.00 0.00 3.13
285 286 3.839490 TCCAACCGACCACTATTAAGGAA 59.161 43.478 0.00 0.00 0.00 3.36
286 287 3.443052 TCCAACCGACCACTATTAAGGA 58.557 45.455 0.00 0.00 0.00 3.36
287 288 3.899052 TCCAACCGACCACTATTAAGG 57.101 47.619 0.00 0.00 0.00 2.69
288 289 6.183360 GGAAATTCCAACCGACCACTATTAAG 60.183 42.308 7.23 0.00 36.28 1.85
289 290 5.648960 GGAAATTCCAACCGACCACTATTAA 59.351 40.000 7.23 0.00 36.28 1.40
290 291 5.187687 GGAAATTCCAACCGACCACTATTA 58.812 41.667 7.23 0.00 36.28 0.98
291 292 4.014406 GGAAATTCCAACCGACCACTATT 58.986 43.478 7.23 0.00 36.28 1.73
292 293 3.617284 GGAAATTCCAACCGACCACTAT 58.383 45.455 7.23 0.00 36.28 2.12
293 294 3.062122 GGAAATTCCAACCGACCACTA 57.938 47.619 7.23 0.00 36.28 2.74
294 295 1.905637 GGAAATTCCAACCGACCACT 58.094 50.000 7.23 0.00 36.28 4.00
354 356 6.751514 AGTGTTTATGACAATTATGCCGAA 57.248 33.333 0.00 0.00 40.65 4.30
428 430 1.979831 CTCCGTCGGTCCTCGTCTTC 61.980 65.000 11.88 0.00 40.32 2.87
430 432 2.436292 CTCCGTCGGTCCTCGTCT 60.436 66.667 11.88 0.00 40.32 4.18
446 448 2.290641 TGTCATGGTTTTGGTATCCGCT 60.291 45.455 0.00 0.00 0.00 5.52
581 584 2.524951 TACGAACCGGGACCAATGGC 62.525 60.000 6.32 0.00 0.00 4.40
630 1124 2.217038 AGCAGGGCTTTGGTCGAGA 61.217 57.895 0.00 0.00 33.89 4.04
647 1141 5.854010 TGACTATGCCCACTAGTAGAAAG 57.146 43.478 3.59 0.00 29.67 2.62
662 1156 3.063997 GTGACTGCCGGAAATTGACTATG 59.936 47.826 5.05 0.00 0.00 2.23
663 1157 3.055094 AGTGACTGCCGGAAATTGACTAT 60.055 43.478 5.05 0.00 0.00 2.12
664 1158 2.301870 AGTGACTGCCGGAAATTGACTA 59.698 45.455 5.05 0.00 0.00 2.59
681 1175 2.680339 CTGATGAGACTGCTACGAGTGA 59.320 50.000 0.00 0.00 0.00 3.41
684 1178 3.433709 CAACTGATGAGACTGCTACGAG 58.566 50.000 0.00 0.00 0.00 4.18
738 1279 8.823818 GTGTTATATAAAGCTTCTTTCCGCTAA 58.176 33.333 0.00 0.00 34.96 3.09
789 1911 0.752658 CCGTGGCAGTCCTATGATCA 59.247 55.000 0.00 0.00 0.00 2.92
804 1926 2.684192 TTTAGTGGGGTGGCACCGTG 62.684 60.000 29.18 0.00 39.83 4.94
805 1927 2.406002 CTTTAGTGGGGTGGCACCGT 62.406 60.000 29.18 16.23 39.83 4.83
806 1928 1.674322 CTTTAGTGGGGTGGCACCG 60.674 63.158 29.18 9.97 39.83 4.94
807 1929 0.608308 GTCTTTAGTGGGGTGGCACC 60.608 60.000 28.69 28.69 37.60 5.01
808 1930 0.608308 GGTCTTTAGTGGGGTGGCAC 60.608 60.000 9.70 9.70 0.00 5.01
862 1984 1.035139 CTCTGGCTGTTTGGTTGCTT 58.965 50.000 0.00 0.00 0.00 3.91
899 2021 7.551585 AGAATGAGACATCGATGAAAGTTAGT 58.448 34.615 31.33 6.50 0.00 2.24
900 2022 8.963130 GTAGAATGAGACATCGATGAAAGTTAG 58.037 37.037 31.33 2.81 0.00 2.34
901 2023 8.466798 TGTAGAATGAGACATCGATGAAAGTTA 58.533 33.333 31.33 12.35 0.00 2.24
902 2024 7.323420 TGTAGAATGAGACATCGATGAAAGTT 58.677 34.615 31.33 17.39 0.00 2.66
903 2025 6.867550 TGTAGAATGAGACATCGATGAAAGT 58.132 36.000 31.33 9.32 0.00 2.66
932 2054 1.301401 TTACCTCGTGCTGCCACAC 60.301 57.895 0.00 0.00 42.17 3.82
952 2078 2.229784 GGCTGATCTGTTGGTTTCTTGG 59.770 50.000 1.27 0.00 0.00 3.61
1028 2154 2.507944 GCGTCATGCAGGAGGGAT 59.492 61.111 21.04 0.00 45.45 3.85
1059 2185 3.984193 GAGGGCTCGCTTGCATGGT 62.984 63.158 1.34 0.00 34.04 3.55
1276 2402 1.301716 CAGCAACTACCCTGCGTGT 60.302 57.895 0.00 0.00 44.75 4.49
1278 2404 2.358737 GCAGCAACTACCCTGCGT 60.359 61.111 0.00 0.00 44.12 5.24
1378 2504 0.460284 TTCTCCTCTCCAATTCGCGC 60.460 55.000 0.00 0.00 0.00 6.86
1493 2619 4.680237 TGAGCCGTTCCCAGCACG 62.680 66.667 0.00 0.00 37.39 5.34
1527 2653 0.904865 AGAACCGGCAGACCAGATCA 60.905 55.000 0.00 0.00 34.57 2.92
1569 2695 2.815647 CAAGCGGCGGAGGAGAAC 60.816 66.667 9.78 0.00 0.00 3.01
1613 2739 1.302271 GAAACTGGTCCCACGTCCC 60.302 63.158 0.00 0.00 0.00 4.46
1742 2868 6.693466 TCTGAAATTCAGTGACCGTATTGTA 58.307 36.000 20.91 0.00 44.58 2.41
1760 2886 3.173599 CCGTAACGAGCGTATTCTGAAA 58.826 45.455 0.00 0.00 0.00 2.69
1970 3104 2.124983 CCTGGCTGCAGCGTGTAT 60.125 61.111 31.19 0.00 43.26 2.29
2104 4432 6.625873 TTCAAAATATATATGTGCGCACCA 57.374 33.333 35.72 24.40 0.00 4.17
2141 4469 8.354711 TGGGCACAGTTACATAAATTTGATAA 57.645 30.769 0.00 0.00 0.00 1.75
2303 4633 1.334160 TTCGGATTATAGCGGAGGCA 58.666 50.000 0.00 0.00 43.41 4.75
2385 5616 2.383855 AGATGAGTCCTAGCCACACTC 58.616 52.381 0.00 0.00 37.63 3.51
2430 5661 5.472820 TGATGTTGTGTGATGTCATGCTTAA 59.527 36.000 0.00 0.00 0.00 1.85
2552 5783 6.212888 AGGCCAAAATGACTAATTCACATC 57.787 37.500 5.01 0.00 36.92 3.06
2569 5800 8.821686 TTGAATTGAGAGATTATAAAGGCCAA 57.178 30.769 5.01 0.00 0.00 4.52
2620 5851 1.079197 ATGCGCGATGACAACCTCA 60.079 52.632 12.10 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.