Multiple sequence alignment - TraesCS4B01G173600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G173600 chr4B 100.000 3704 0 0 1 3704 380652455 380656158 0.000000e+00 6841.0
1 TraesCS4B01G173600 chr4B 83.762 505 63 12 1 493 16897015 16896518 9.370000e-126 460.0
2 TraesCS4B01G173600 chr4B 80.357 112 22 0 397 508 25825539 25825650 6.590000e-13 86.1
3 TraesCS4B01G173600 chr4D 92.476 3057 101 37 519 3497 304689710 304692715 0.000000e+00 4252.0
4 TraesCS4B01G173600 chr4D 84.038 520 61 17 1 504 484673324 484673837 7.190000e-132 481.0
5 TraesCS4B01G173600 chr4D 98.947 95 1 0 3610 3704 304692713 304692807 1.770000e-38 171.0
6 TraesCS4B01G173600 chr4A 90.416 3078 113 52 516 3497 174157976 174154985 0.000000e+00 3882.0
7 TraesCS4B01G173600 chr4A 96.842 95 3 0 3610 3704 174154987 174154893 3.830000e-35 159.0
8 TraesCS4B01G173600 chr7D 86.047 516 53 10 1 504 227563981 227563473 1.510000e-148 536.0
9 TraesCS4B01G173600 chr2A 85.098 510 62 11 1 504 640302949 640302448 3.300000e-140 508.0
10 TraesCS4B01G173600 chr2A 85.494 324 40 5 1315 1633 54882607 54882928 7.670000e-87 331.0
11 TraesCS4B01G173600 chr2A 85.580 319 43 3 1318 1633 54955250 54954932 7.670000e-87 331.0
12 TraesCS4B01G173600 chr2A 89.933 149 15 0 1024 1172 54882382 54882530 3.780000e-45 193.0
13 TraesCS4B01G173600 chr2A 89.933 149 15 0 1024 1172 54955478 54955330 3.780000e-45 193.0
14 TraesCS4B01G173600 chr6B 84.884 516 58 13 1 506 95234534 95235039 1.540000e-138 503.0
15 TraesCS4B01G173600 chr6B 88.136 118 14 0 3495 3612 649819702 649819585 1.390000e-29 141.0
16 TraesCS4B01G173600 chr6B 81.034 116 15 6 400 511 364900042 364899930 6.590000e-13 86.1
17 TraesCS4B01G173600 chr2D 84.749 518 59 13 1 506 567682984 567683493 5.520000e-138 501.0
18 TraesCS4B01G173600 chr2D 85.494 324 40 5 1318 1636 54487749 54487428 7.670000e-87 331.0
19 TraesCS4B01G173600 chr2D 84.877 324 43 4 1315 1633 54317744 54318066 4.610000e-84 322.0
20 TraesCS4B01G173600 chr2D 90.604 149 14 0 1024 1172 54487979 54487831 8.110000e-47 198.0
21 TraesCS4B01G173600 chr2D 90.345 145 14 0 1024 1168 54317524 54317668 1.360000e-44 191.0
22 TraesCS4B01G173600 chr2D 83.217 143 20 4 1024 1164 175331280 175331420 1.080000e-25 128.0
23 TraesCS4B01G173600 chr2D 81.102 127 23 1 378 504 71426580 71426455 2.350000e-17 100.0
24 TraesCS4B01G173600 chr2D 86.022 93 10 1 2128 2220 54318594 54318683 3.040000e-16 97.1
25 TraesCS4B01G173600 chr5B 84.586 519 61 13 1 507 557500142 557499631 7.140000e-137 497.0
26 TraesCS4B01G173600 chr5B 84.418 507 66 11 4 504 588814406 588813907 1.550000e-133 486.0
27 TraesCS4B01G173600 chr5B 89.256 121 13 0 3492 3612 681084981 681084861 6.410000e-33 152.0
28 TraesCS4B01G173600 chr5B 87.705 122 15 0 3494 3615 429122105 429121984 3.860000e-30 143.0
29 TraesCS4B01G173600 chr5B 83.704 135 21 1 374 508 702222331 702222198 3.880000e-25 126.0
30 TraesCS4B01G173600 chr6A 84.272 515 63 16 1 504 219567577 219568084 1.550000e-133 486.0
31 TraesCS4B01G173600 chr3D 83.883 515 65 11 1 504 104018377 104017870 3.350000e-130 475.0
32 TraesCS4B01G173600 chr3D 90.678 118 11 0 3496 3613 66739390 66739273 1.380000e-34 158.0
33 TraesCS4B01G173600 chr6D 83.460 526 49 10 1 504 367126559 367127068 4.360000e-124 455.0
34 TraesCS4B01G173600 chr6D 83.270 526 50 10 1 504 367080971 367081480 2.030000e-122 449.0
35 TraesCS4B01G173600 chr1D 85.845 438 42 15 1 426 416747778 416747349 7.300000e-122 448.0
36 TraesCS4B01G173600 chr1D 95.238 42 2 0 2133 2174 359665073 359665032 2.390000e-07 67.6
37 TraesCS4B01G173600 chr2B 85.494 324 40 5 1318 1636 85177682 85177361 7.670000e-87 331.0
38 TraesCS4B01G173600 chr2B 85.139 323 43 3 1315 1633 85074247 85074568 3.570000e-85 326.0
39 TraesCS4B01G173600 chr2B 91.724 145 12 0 1024 1168 85177910 85177766 6.270000e-48 202.0
40 TraesCS4B01G173600 chr2B 89.655 145 15 0 1024 1168 85074018 85074162 6.320000e-43 185.0
41 TraesCS4B01G173600 chr2B 85.000 140 19 2 3474 3613 500592358 500592495 1.390000e-29 141.0
42 TraesCS4B01G173600 chr5A 83.969 262 38 4 1317 1576 317247936 317247677 7.940000e-62 248.0
43 TraesCS4B01G173600 chr5A 86.508 126 17 0 3494 3619 706438908 706439033 4.990000e-29 139.0
44 TraesCS4B01G173600 chr5A 83.704 135 20 2 374 507 443733702 443733569 3.880000e-25 126.0
45 TraesCS4B01G173600 chr7B 88.136 118 14 0 3496 3613 573939300 573939183 1.390000e-29 141.0
46 TraesCS4B01G173600 chr7B 88.136 118 14 0 3496 3613 573954939 573954822 1.390000e-29 141.0
47 TraesCS4B01G173600 chr7B 87.603 121 15 0 3492 3612 692308825 692308705 1.390000e-29 141.0
48 TraesCS4B01G173600 chr1A 95.238 42 2 0 2133 2174 459187451 459187410 2.390000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G173600 chr4B 380652455 380656158 3703 False 6841.000000 6841 100.000000 1 3704 1 chr4B.!!$F2 3703
1 TraesCS4B01G173600 chr4D 304689710 304692807 3097 False 2211.500000 4252 95.711500 519 3704 2 chr4D.!!$F2 3185
2 TraesCS4B01G173600 chr4D 484673324 484673837 513 False 481.000000 481 84.038000 1 504 1 chr4D.!!$F1 503
3 TraesCS4B01G173600 chr4A 174154893 174157976 3083 True 2020.500000 3882 93.629000 516 3704 2 chr4A.!!$R1 3188
4 TraesCS4B01G173600 chr7D 227563473 227563981 508 True 536.000000 536 86.047000 1 504 1 chr7D.!!$R1 503
5 TraesCS4B01G173600 chr2A 640302448 640302949 501 True 508.000000 508 85.098000 1 504 1 chr2A.!!$R1 503
6 TraesCS4B01G173600 chr2A 54882382 54882928 546 False 262.000000 331 87.713500 1024 1633 2 chr2A.!!$F1 609
7 TraesCS4B01G173600 chr2A 54954932 54955478 546 True 262.000000 331 87.756500 1024 1633 2 chr2A.!!$R2 609
8 TraesCS4B01G173600 chr6B 95234534 95235039 505 False 503.000000 503 84.884000 1 506 1 chr6B.!!$F1 505
9 TraesCS4B01G173600 chr2D 567682984 567683493 509 False 501.000000 501 84.749000 1 506 1 chr2D.!!$F2 505
10 TraesCS4B01G173600 chr2D 54487428 54487979 551 True 264.500000 331 88.049000 1024 1636 2 chr2D.!!$R2 612
11 TraesCS4B01G173600 chr2D 54317524 54318683 1159 False 203.366667 322 87.081333 1024 2220 3 chr2D.!!$F3 1196
12 TraesCS4B01G173600 chr5B 557499631 557500142 511 True 497.000000 497 84.586000 1 507 1 chr5B.!!$R2 506
13 TraesCS4B01G173600 chr6A 219567577 219568084 507 False 486.000000 486 84.272000 1 504 1 chr6A.!!$F1 503
14 TraesCS4B01G173600 chr3D 104017870 104018377 507 True 475.000000 475 83.883000 1 504 1 chr3D.!!$R2 503
15 TraesCS4B01G173600 chr6D 367126559 367127068 509 False 455.000000 455 83.460000 1 504 1 chr6D.!!$F2 503
16 TraesCS4B01G173600 chr6D 367080971 367081480 509 False 449.000000 449 83.270000 1 504 1 chr6D.!!$F1 503
17 TraesCS4B01G173600 chr2B 85177361 85177910 549 True 266.500000 331 88.609000 1024 1636 2 chr2B.!!$R1 612
18 TraesCS4B01G173600 chr2B 85074018 85074568 550 False 255.500000 326 87.397000 1024 1633 2 chr2B.!!$F2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 756 0.245539 CGACGATAACCACACACCCT 59.754 55.0 0.0 0.0 0.00 4.34 F
989 1050 0.317103 CTAGGGTTCGTCATCGAGCG 60.317 60.0 0.0 0.0 46.81 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1645 1.167851 CGTGCATGATCCAGTTGGTT 58.832 50.0 0.0 0.0 36.34 3.67 R
2911 3277 0.038159 TCGACACACACACACACACA 60.038 50.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.422970 ACGGTTGTATGTACAATTAGAGGGA 59.577 40.000 0.00 0.00 46.56 4.20
76 91 8.156165 AGAACCAAAAATGAGGAATGCAAAATA 58.844 29.630 0.00 0.00 0.00 1.40
157 172 7.704047 GGAGCAATTATGAAAGTTGGAAATCTC 59.296 37.037 0.00 0.00 0.00 2.75
245 263 6.597672 TGTCCTATGTATCCAATGTTGTTGAC 59.402 38.462 0.00 0.00 0.00 3.18
286 306 7.169645 GCATTATGTTGTGTCAAATTGAAGTGT 59.830 33.333 0.00 0.00 0.00 3.55
304 325 7.891561 TGAAGTGTAAATTTAGGATTTGTGGG 58.108 34.615 0.00 0.00 0.00 4.61
348 381 2.112198 CCCGCAAAGCCGAGCATAA 61.112 57.895 0.00 0.00 0.00 1.90
437 475 2.585247 GCGCCGGCTCGTAAATCT 60.585 61.111 26.68 0.00 35.83 2.40
482 520 1.947597 TTTACGGGTCGACGGGATGG 61.948 60.000 9.92 0.00 38.39 3.51
494 532 1.048724 CGGGATGGAGGGTCTGCTAA 61.049 60.000 0.00 0.00 0.00 3.09
507 545 4.141824 GGGTCTGCTAAAGATGCTCTTACT 60.142 45.833 0.00 0.00 35.27 2.24
508 546 5.047188 GGTCTGCTAAAGATGCTCTTACTC 58.953 45.833 0.00 0.00 35.27 2.59
509 547 5.163457 GGTCTGCTAAAGATGCTCTTACTCT 60.163 44.000 0.00 0.00 35.27 3.24
510 548 5.748152 GTCTGCTAAAGATGCTCTTACTCTG 59.252 44.000 0.00 0.00 35.27 3.35
511 549 5.420421 TCTGCTAAAGATGCTCTTACTCTGT 59.580 40.000 0.00 0.00 35.27 3.41
512 550 6.603599 TCTGCTAAAGATGCTCTTACTCTGTA 59.396 38.462 0.00 0.00 35.27 2.74
513 551 7.122799 TCTGCTAAAGATGCTCTTACTCTGTAA 59.877 37.037 0.00 0.00 35.27 2.41
514 552 7.036220 TGCTAAAGATGCTCTTACTCTGTAAC 58.964 38.462 0.00 0.00 35.27 2.50
515 553 7.036220 GCTAAAGATGCTCTTACTCTGTAACA 58.964 38.462 0.00 0.00 35.27 2.41
516 554 7.545965 GCTAAAGATGCTCTTACTCTGTAACAA 59.454 37.037 0.00 0.00 35.27 2.83
517 555 9.424319 CTAAAGATGCTCTTACTCTGTAACAAA 57.576 33.333 0.00 0.00 35.27 2.83
578 616 2.837883 CGGCCCAAATCCATCGCTG 61.838 63.158 0.00 0.00 0.00 5.18
579 617 2.492773 GGCCCAAATCCATCGCTGG 61.493 63.158 0.00 0.00 44.64 4.85
593 631 3.327148 CTGGAAGCATCATCGGCG 58.673 61.111 0.00 0.00 36.08 6.46
694 738 3.062059 CGGACGTGAGAAATAACGAATCG 60.062 47.826 0.00 0.00 0.00 3.34
712 756 0.245539 CGACGATAACCACACACCCT 59.754 55.000 0.00 0.00 0.00 4.34
752 803 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
753 804 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
754 805 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
756 807 3.039526 CCTCCCTCCCTCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
757 808 2.612251 CTCCCTCCCTCCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
758 809 3.430497 TCCCTCCCTCCCTCCTCG 61.430 72.222 0.00 0.00 0.00 4.63
759 810 3.430497 CCCTCCCTCCCTCCTCGA 61.430 72.222 0.00 0.00 0.00 4.04
799 850 0.657368 CGCGCACAAGAGGACAAAAC 60.657 55.000 8.75 0.00 0.00 2.43
880 931 4.793201 TCTCATACCTACAAGCTCTGCTA 58.207 43.478 0.00 0.00 38.25 3.49
881 932 4.824537 TCTCATACCTACAAGCTCTGCTAG 59.175 45.833 0.00 0.00 38.25 3.42
903 954 5.054390 GCTAGTTCATCTATCGCTAGCTT 57.946 43.478 13.93 2.55 46.41 3.74
908 959 3.756117 TCATCTATCGCTAGCTTCCTCA 58.244 45.455 13.93 0.00 0.00 3.86
909 960 4.339748 TCATCTATCGCTAGCTTCCTCAT 58.660 43.478 13.93 0.00 0.00 2.90
910 961 5.501156 TCATCTATCGCTAGCTTCCTCATA 58.499 41.667 13.93 0.00 0.00 2.15
911 962 5.355630 TCATCTATCGCTAGCTTCCTCATAC 59.644 44.000 13.93 0.00 0.00 2.39
912 963 4.011023 TCTATCGCTAGCTTCCTCATACC 58.989 47.826 13.93 0.00 0.00 2.73
913 964 1.329256 TCGCTAGCTTCCTCATACCC 58.671 55.000 13.93 0.00 0.00 3.69
914 965 1.040646 CGCTAGCTTCCTCATACCCA 58.959 55.000 13.93 0.00 0.00 4.51
915 966 1.620819 CGCTAGCTTCCTCATACCCAT 59.379 52.381 13.93 0.00 0.00 4.00
916 967 2.826128 CGCTAGCTTCCTCATACCCATA 59.174 50.000 13.93 0.00 0.00 2.74
917 968 3.449018 CGCTAGCTTCCTCATACCCATAT 59.551 47.826 13.93 0.00 0.00 1.78
918 969 4.440802 CGCTAGCTTCCTCATACCCATATC 60.441 50.000 13.93 0.00 0.00 1.63
989 1050 0.317103 CTAGGGTTCGTCATCGAGCG 60.317 60.000 0.00 0.00 46.81 5.03
1221 1321 6.323996 ACCAAGCAGATCATGATTCATTCATT 59.676 34.615 10.14 0.00 42.62 2.57
1222 1322 6.863645 CCAAGCAGATCATGATTCATTCATTC 59.136 38.462 10.14 0.00 42.62 2.67
1223 1323 7.425606 CAAGCAGATCATGATTCATTCATTCA 58.574 34.615 10.14 0.00 42.62 2.57
1224 1324 7.767250 AGCAGATCATGATTCATTCATTCAT 57.233 32.000 10.14 0.00 42.62 2.57
1265 1365 0.611200 TTCCCACTTGCGCTAGCTTA 59.389 50.000 18.90 0.00 45.42 3.09
1291 1391 5.281727 TCTCATCTCAATAATCGTCCGTTG 58.718 41.667 0.00 0.00 0.00 4.10
1300 1400 6.425721 TCAATAATCGTCCGTTGTTTCTCTTT 59.574 34.615 0.00 0.00 0.00 2.52
1310 1410 2.944129 TGTTTCTCTTTGGGTCCCTTG 58.056 47.619 10.00 0.00 0.00 3.61
1641 1756 0.462047 CCATGAGGGTAAGTCGCCAC 60.462 60.000 0.00 0.00 0.00 5.01
1770 1888 8.851960 TCTTAGTATATGTCAATTCGTGTCAC 57.148 34.615 0.00 0.00 0.00 3.67
1893 2216 4.600576 TGTGCAGTGGCTCGCGAA 62.601 61.111 11.33 0.00 41.91 4.70
2123 2451 2.803133 CGTGTGATCCGTCTTGGCATAT 60.803 50.000 0.00 0.00 37.80 1.78
2124 2452 3.552068 CGTGTGATCCGTCTTGGCATATA 60.552 47.826 0.00 0.00 37.80 0.86
2125 2453 3.741344 GTGTGATCCGTCTTGGCATATAC 59.259 47.826 0.00 0.00 37.80 1.47
2689 3053 2.752807 AACACCTTGCAGGGGACGT 61.753 57.895 20.34 10.26 43.10 4.34
2778 3142 7.093727 CCCCATCAGTCTGAATTATATACGACT 60.094 40.741 6.64 0.00 32.42 4.18
2819 3183 8.893563 TGAAGAACAATTATTGGGGTCTATTT 57.106 30.769 9.88 0.00 34.12 1.40
2897 3263 1.002746 TGCAGGTGTGTGTGTGTGT 60.003 52.632 0.00 0.00 0.00 3.72
2899 3265 1.305219 GCAGGTGTGTGTGTGTGTGT 61.305 55.000 0.00 0.00 0.00 3.72
2901 3267 0.036164 AGGTGTGTGTGTGTGTGTGT 59.964 50.000 0.00 0.00 0.00 3.72
2903 3269 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2905 3271 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2907 3273 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2909 3275 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2911 3277 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2913 3279 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2915 3281 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2917 3283 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3001 3368 7.644490 GTGTGTACACAATATTTTTGTCTCCA 58.356 34.615 29.44 0.00 45.75 3.86
3046 3413 1.270274 TGAAGCTTACGACCGTGCTAA 59.730 47.619 0.00 0.00 35.09 3.09
3074 3441 3.181492 GCTTGATCAGACTGAGATCGACA 60.181 47.826 11.52 2.02 43.73 4.35
3075 3442 4.676459 GCTTGATCAGACTGAGATCGACAA 60.676 45.833 11.52 8.83 43.73 3.18
3201 3574 8.437360 TTGTATACAGAAATGTTCAGCCATAG 57.563 34.615 5.56 0.00 0.00 2.23
3206 3579 4.631377 CAGAAATGTTCAGCCATAGACGAA 59.369 41.667 0.00 0.00 0.00 3.85
3267 3641 4.323868 GGACGAGAAAATCACAAGTACGAG 59.676 45.833 0.00 0.00 0.00 4.18
3355 3729 4.401519 AGGACGGACGAAAGAAGAATATGA 59.598 41.667 0.00 0.00 0.00 2.15
3423 3797 2.806244 GCGTTTAGCTTTCAGTTCAGGA 59.194 45.455 0.00 0.00 44.04 3.86
3452 3826 1.523758 GTGACAGCCTTTTCATCCGT 58.476 50.000 0.00 0.00 0.00 4.69
3480 3854 4.895297 AGTTTTCTTCAGATTGGCCAAGAA 59.105 37.500 24.94 19.54 33.92 2.52
3497 3871 4.321230 CCAAGAAGCCTTTTGTCCATGTAC 60.321 45.833 0.00 0.00 0.00 2.90
3498 3872 4.373156 AGAAGCCTTTTGTCCATGTACT 57.627 40.909 0.00 0.00 0.00 2.73
3499 3873 4.327680 AGAAGCCTTTTGTCCATGTACTC 58.672 43.478 0.00 0.00 0.00 2.59
3500 3874 3.073274 AGCCTTTTGTCCATGTACTCC 57.927 47.619 0.00 0.00 0.00 3.85
3501 3875 2.092323 GCCTTTTGTCCATGTACTCCC 58.908 52.381 0.00 0.00 0.00 4.30
3502 3876 2.290960 GCCTTTTGTCCATGTACTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
3503 3877 3.610911 CCTTTTGTCCATGTACTCCCTC 58.389 50.000 0.00 0.00 0.00 4.30
3504 3878 3.610911 CTTTTGTCCATGTACTCCCTCC 58.389 50.000 0.00 0.00 0.00 4.30
3505 3879 2.335681 TTGTCCATGTACTCCCTCCA 57.664 50.000 0.00 0.00 0.00 3.86
3506 3880 2.568546 TGTCCATGTACTCCCTCCAT 57.431 50.000 0.00 0.00 0.00 3.41
3507 3881 2.398588 TGTCCATGTACTCCCTCCATC 58.601 52.381 0.00 0.00 0.00 3.51
3508 3882 1.694696 GTCCATGTACTCCCTCCATCC 59.305 57.143 0.00 0.00 0.00 3.51
3509 3883 0.681733 CCATGTACTCCCTCCATCCG 59.318 60.000 0.00 0.00 0.00 4.18
3510 3884 1.704641 CATGTACTCCCTCCATCCGA 58.295 55.000 0.00 0.00 0.00 4.55
3511 3885 2.039418 CATGTACTCCCTCCATCCGAA 58.961 52.381 0.00 0.00 0.00 4.30
3512 3886 2.241281 TGTACTCCCTCCATCCGAAA 57.759 50.000 0.00 0.00 0.00 3.46
3513 3887 2.542550 TGTACTCCCTCCATCCGAAAA 58.457 47.619 0.00 0.00 0.00 2.29
3514 3888 3.112263 TGTACTCCCTCCATCCGAAAAT 58.888 45.455 0.00 0.00 0.00 1.82
3515 3889 2.717639 ACTCCCTCCATCCGAAAATG 57.282 50.000 0.00 0.00 0.00 2.32
3516 3890 1.312815 CTCCCTCCATCCGAAAATGC 58.687 55.000 0.00 0.00 0.00 3.56
3517 3891 0.918983 TCCCTCCATCCGAAAATGCT 59.081 50.000 0.00 0.00 0.00 3.79
3518 3892 1.134098 TCCCTCCATCCGAAAATGCTC 60.134 52.381 0.00 0.00 0.00 4.26
3519 3893 0.940126 CCTCCATCCGAAAATGCTCG 59.060 55.000 0.00 0.00 38.58 5.03
3520 3894 1.656652 CTCCATCCGAAAATGCTCGT 58.343 50.000 0.00 0.00 37.11 4.18
3521 3895 1.594862 CTCCATCCGAAAATGCTCGTC 59.405 52.381 0.00 0.00 37.11 4.20
3522 3896 1.066502 TCCATCCGAAAATGCTCGTCA 60.067 47.619 0.00 0.00 37.11 4.35
3523 3897 1.942657 CCATCCGAAAATGCTCGTCAT 59.057 47.619 0.00 0.00 37.11 3.06
3524 3898 2.355756 CCATCCGAAAATGCTCGTCATT 59.644 45.455 0.00 0.98 46.82 2.57
3525 3899 3.559655 CCATCCGAAAATGCTCGTCATTA 59.440 43.478 6.20 0.00 44.23 1.90
3526 3900 4.035091 CCATCCGAAAATGCTCGTCATTAA 59.965 41.667 6.20 0.00 44.23 1.40
3527 3901 5.448496 CCATCCGAAAATGCTCGTCATTAAA 60.448 40.000 6.20 0.00 44.23 1.52
3528 3902 5.614923 TCCGAAAATGCTCGTCATTAAAA 57.385 34.783 6.20 0.00 44.23 1.52
3529 3903 6.189677 TCCGAAAATGCTCGTCATTAAAAT 57.810 33.333 6.20 0.00 44.23 1.82
3530 3904 7.310072 TCCGAAAATGCTCGTCATTAAAATA 57.690 32.000 6.20 0.00 44.23 1.40
3531 3905 7.925993 TCCGAAAATGCTCGTCATTAAAATAT 58.074 30.769 6.20 0.00 44.23 1.28
3532 3906 9.047371 TCCGAAAATGCTCGTCATTAAAATATA 57.953 29.630 6.20 0.00 44.23 0.86
3533 3907 9.825972 CCGAAAATGCTCGTCATTAAAATATAT 57.174 29.630 6.20 0.00 44.23 0.86
3599 3973 8.700722 TCCATTTTGATGACAAATATTTTCGG 57.299 30.769 0.00 0.00 43.99 4.30
3600 3974 8.526978 TCCATTTTGATGACAAATATTTTCGGA 58.473 29.630 0.00 0.00 43.99 4.55
3601 3975 9.316730 CCATTTTGATGACAAATATTTTCGGAT 57.683 29.630 0.00 0.00 43.99 4.18
3603 3977 8.700722 TTTTGATGACAAATATTTTCGGATGG 57.299 30.769 0.00 0.00 43.99 3.51
3604 3978 7.637631 TTGATGACAAATATTTTCGGATGGA 57.362 32.000 0.00 0.00 32.73 3.41
3605 3979 7.263100 TGATGACAAATATTTTCGGATGGAG 57.737 36.000 0.00 0.00 0.00 3.86
3606 3980 6.262944 TGATGACAAATATTTTCGGATGGAGG 59.737 38.462 0.00 0.00 0.00 4.30
3607 3981 5.750524 TGACAAATATTTTCGGATGGAGGA 58.249 37.500 0.00 0.00 0.00 3.71
3608 3982 6.184068 TGACAAATATTTTCGGATGGAGGAA 58.816 36.000 0.00 0.00 0.00 3.36
3609 3983 6.318648 TGACAAATATTTTCGGATGGAGGAAG 59.681 38.462 0.00 0.00 0.00 3.46
3610 3984 6.187682 ACAAATATTTTCGGATGGAGGAAGT 58.812 36.000 0.00 0.00 0.00 3.01
3611 3985 7.343357 ACAAATATTTTCGGATGGAGGAAGTA 58.657 34.615 0.00 0.00 0.00 2.24
3612 3986 7.282450 ACAAATATTTTCGGATGGAGGAAGTAC 59.718 37.037 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.537301 CGTTGCTTTCCCTCTAATTGTACATA 59.463 38.462 0.00 0.00 0.00 2.29
18 19 3.751518 ACGTTGCTTTCCCTCTAATTGT 58.248 40.909 0.00 0.00 0.00 2.71
22 23 3.830755 AGTAGACGTTGCTTTCCCTCTAA 59.169 43.478 0.00 0.00 0.00 2.10
30 31 6.202379 GGTTCTAAAGAAGTAGACGTTGCTTT 59.798 38.462 0.00 0.00 34.27 3.51
64 72 7.322664 TCTGTGGATTCTTTATTTTGCATTCC 58.677 34.615 0.00 0.00 0.00 3.01
76 91 7.528996 TTCATTGTTGATCTGTGGATTCTTT 57.471 32.000 0.00 0.00 31.46 2.52
128 143 5.271598 TCCAACTTTCATAATTGCTCCCAT 58.728 37.500 0.00 0.00 0.00 4.00
157 172 7.818930 ACAAGAACCACAATTATGCATTTTAGG 59.181 33.333 3.54 7.67 0.00 2.69
286 306 3.131400 GCCGCCCACAAATCCTAAATTTA 59.869 43.478 0.00 0.00 0.00 1.40
348 381 3.739300 CGTACAAAAGGATATTCGCGGAT 59.261 43.478 4.69 4.69 0.00 4.18
384 417 1.078918 GACCCCTAAAACGGACCCG 60.079 63.158 6.94 6.94 46.03 5.28
385 418 0.035725 CAGACCCCTAAAACGGACCC 60.036 60.000 0.00 0.00 0.00 4.46
386 419 0.675837 GCAGACCCCTAAAACGGACC 60.676 60.000 0.00 0.00 0.00 4.46
387 420 0.675837 GGCAGACCCCTAAAACGGAC 60.676 60.000 0.00 0.00 0.00 4.79
388 421 0.838987 AGGCAGACCCCTAAAACGGA 60.839 55.000 0.00 0.00 36.11 4.69
389 422 0.392595 GAGGCAGACCCCTAAAACGG 60.393 60.000 0.00 0.00 34.69 4.44
390 423 0.613777 AGAGGCAGACCCCTAAAACG 59.386 55.000 0.00 0.00 34.69 3.60
391 424 1.351350 ACAGAGGCAGACCCCTAAAAC 59.649 52.381 0.00 0.00 34.69 2.43
392 425 1.351017 CACAGAGGCAGACCCCTAAAA 59.649 52.381 0.00 0.00 34.69 1.52
393 426 0.984230 CACAGAGGCAGACCCCTAAA 59.016 55.000 0.00 0.00 34.69 1.85
394 427 0.909610 CCACAGAGGCAGACCCCTAA 60.910 60.000 0.00 0.00 34.69 2.69
395 428 1.306141 CCACAGAGGCAGACCCCTA 60.306 63.158 0.00 0.00 34.69 3.53
396 429 2.608988 CCACAGAGGCAGACCCCT 60.609 66.667 0.00 0.00 38.12 4.79
446 484 4.091220 CCGTAAAACGCATTTGCAATTCAT 59.909 37.500 0.00 0.00 40.91 2.57
451 489 1.067212 ACCCGTAAAACGCATTTGCAA 59.933 42.857 0.00 0.00 40.91 4.08
482 520 2.832563 GAGCATCTTTAGCAGACCCTC 58.167 52.381 0.00 0.00 32.83 4.30
507 545 4.394729 GAATCCCACACCTTTGTTACAGA 58.605 43.478 0.00 0.00 31.66 3.41
508 546 3.506067 GGAATCCCACACCTTTGTTACAG 59.494 47.826 0.00 0.00 31.66 2.74
509 547 3.492337 GGAATCCCACACCTTTGTTACA 58.508 45.455 0.00 0.00 31.66 2.41
510 548 2.486592 CGGAATCCCACACCTTTGTTAC 59.513 50.000 0.00 0.00 31.66 2.50
511 549 2.106857 ACGGAATCCCACACCTTTGTTA 59.893 45.455 0.00 0.00 31.66 2.41
512 550 1.133606 ACGGAATCCCACACCTTTGTT 60.134 47.619 0.00 0.00 31.66 2.83
513 551 0.476771 ACGGAATCCCACACCTTTGT 59.523 50.000 0.00 0.00 35.84 2.83
514 552 1.269448 CAACGGAATCCCACACCTTTG 59.731 52.381 0.00 0.00 0.00 2.77
515 553 1.133606 ACAACGGAATCCCACACCTTT 60.134 47.619 0.00 0.00 0.00 3.11
516 554 0.476771 ACAACGGAATCCCACACCTT 59.523 50.000 0.00 0.00 0.00 3.50
517 555 0.250727 CACAACGGAATCCCACACCT 60.251 55.000 0.00 0.00 0.00 4.00
578 616 2.974698 CCCGCCGATGATGCTTCC 60.975 66.667 0.00 0.00 0.00 3.46
579 617 3.654020 GCCCGCCGATGATGCTTC 61.654 66.667 0.00 0.00 0.00 3.86
580 618 3.993614 TTGCCCGCCGATGATGCTT 62.994 57.895 0.00 0.00 0.00 3.91
581 619 4.488136 TTGCCCGCCGATGATGCT 62.488 61.111 0.00 0.00 0.00 3.79
582 620 4.256090 GTTGCCCGCCGATGATGC 62.256 66.667 0.00 0.00 0.00 3.91
583 621 2.823593 TGTTGCCCGCCGATGATG 60.824 61.111 0.00 0.00 0.00 3.07
584 622 2.824041 GTGTTGCCCGCCGATGAT 60.824 61.111 0.00 0.00 0.00 2.45
694 738 1.549170 AGAGGGTGTGTGGTTATCGTC 59.451 52.381 0.00 0.00 0.00 4.20
712 756 1.712056 TCTCTGTGGTTTCGGGAAGA 58.288 50.000 0.00 0.00 0.00 2.87
752 803 4.227134 CCATGGCCCGTCGAGGAG 62.227 72.222 6.70 0.00 45.00 3.69
882 933 5.414454 AGGAAGCTAGCGATAGATGAACTAG 59.586 44.000 12.82 0.00 34.35 2.57
883 934 5.317808 AGGAAGCTAGCGATAGATGAACTA 58.682 41.667 12.82 0.00 39.76 2.24
884 935 4.148838 AGGAAGCTAGCGATAGATGAACT 58.851 43.478 12.82 1.63 39.76 3.01
885 936 4.022762 TGAGGAAGCTAGCGATAGATGAAC 60.023 45.833 12.82 0.00 39.76 3.18
886 937 4.145052 TGAGGAAGCTAGCGATAGATGAA 58.855 43.478 12.82 0.00 39.76 2.57
887 938 3.756117 TGAGGAAGCTAGCGATAGATGA 58.244 45.455 12.82 0.00 39.76 2.92
903 954 3.245479 TGGTAGCGATATGGGTATGAGGA 60.245 47.826 0.00 0.00 0.00 3.71
908 959 4.873010 AGATCTGGTAGCGATATGGGTAT 58.127 43.478 0.00 0.00 0.00 2.73
909 960 4.317530 AGATCTGGTAGCGATATGGGTA 57.682 45.455 0.00 0.00 0.00 3.69
910 961 3.176924 AGATCTGGTAGCGATATGGGT 57.823 47.619 0.00 0.00 0.00 4.51
911 962 3.766591 AGAAGATCTGGTAGCGATATGGG 59.233 47.826 0.00 0.00 0.00 4.00
912 963 5.398603 AAGAAGATCTGGTAGCGATATGG 57.601 43.478 0.00 0.00 0.00 2.74
913 964 5.047731 TGGAAGAAGATCTGGTAGCGATATG 60.048 44.000 0.00 0.00 0.00 1.78
914 965 5.080337 TGGAAGAAGATCTGGTAGCGATAT 58.920 41.667 0.00 0.00 0.00 1.63
915 966 4.470602 TGGAAGAAGATCTGGTAGCGATA 58.529 43.478 0.00 0.00 0.00 2.92
916 967 3.300388 TGGAAGAAGATCTGGTAGCGAT 58.700 45.455 0.00 0.04 0.00 4.58
917 968 2.735151 TGGAAGAAGATCTGGTAGCGA 58.265 47.619 0.00 0.00 0.00 4.93
918 969 3.131223 TCTTGGAAGAAGATCTGGTAGCG 59.869 47.826 0.00 0.00 30.73 4.26
1071 1142 2.654877 CGGTTGCGGAGGTAGTGT 59.345 61.111 0.00 0.00 0.00 3.55
1265 1365 6.516718 ACGGACGATTATTGAGATGAGAATT 58.483 36.000 0.00 0.00 0.00 2.17
1291 1391 3.223674 TCAAGGGACCCAAAGAGAAAC 57.776 47.619 14.60 0.00 0.00 2.78
1300 1400 3.364549 CTGCAATTAATCAAGGGACCCA 58.635 45.455 14.60 0.00 0.00 4.51
1310 1410 3.551659 GCTAGCCTTGGCTGCAATTAATC 60.552 47.826 23.03 0.00 0.00 1.75
1533 1645 1.167851 CGTGCATGATCCAGTTGGTT 58.832 50.000 0.00 0.00 36.34 3.67
1578 1690 3.931247 TAGGTGTTGGCGGCGTGT 61.931 61.111 9.37 0.00 0.00 4.49
1641 1756 1.274596 GATTGCTGTACCGTACGTGG 58.725 55.000 15.21 1.90 0.00 4.94
1694 1809 2.621526 CACTAGGGTTTTGGGTGTTCAC 59.378 50.000 0.00 0.00 0.00 3.18
1770 1888 2.174107 CCACGCATGCAACTGTCG 59.826 61.111 19.57 1.32 0.00 4.35
1772 1890 2.906388 TGCCACGCATGCAACTGT 60.906 55.556 19.57 4.10 35.40 3.55
1914 2241 5.459110 TTCTTTAAACGAGACACACACAC 57.541 39.130 0.00 0.00 0.00 3.82
2123 2451 4.835056 AGTCATCCAGCTGCATACATAGTA 59.165 41.667 8.66 0.00 0.00 1.82
2124 2452 3.645212 AGTCATCCAGCTGCATACATAGT 59.355 43.478 8.66 0.00 0.00 2.12
2125 2453 3.995048 CAGTCATCCAGCTGCATACATAG 59.005 47.826 8.66 0.00 0.00 2.23
2318 2646 2.265739 GCATCCTCTGTGTGCCGA 59.734 61.111 0.00 0.00 32.88 5.54
2689 3053 2.432444 CCCATGTTAGAAACGGAGCAA 58.568 47.619 0.00 0.00 0.00 3.91
2778 3142 1.879380 CTTCAAATCACCAGTTCGCCA 59.121 47.619 0.00 0.00 0.00 5.69
2897 3263 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2899 3265 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2901 3267 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2903 3269 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2905 3271 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2907 3273 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2909 3275 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
2911 3277 0.038159 TCGACACACACACACACACA 60.038 50.000 0.00 0.00 0.00 3.72
2913 3279 1.072391 GTTCGACACACACACACACA 58.928 50.000 0.00 0.00 0.00 3.72
2915 3281 0.109226 TCGTTCGACACACACACACA 60.109 50.000 0.00 0.00 0.00 3.72
2917 3283 0.171679 AGTCGTTCGACACACACACA 59.828 50.000 23.70 0.00 37.59 3.72
3001 3368 3.359033 ACATGATTGTACTGCATGCCTT 58.641 40.909 16.68 4.09 42.28 4.35
3046 3413 2.500910 CTCAGTCTGATCAAGCCCTTCT 59.499 50.000 2.22 0.00 0.00 2.85
3074 3441 7.721399 ACATCTTATGTTCCAGACTTTCAGTTT 59.279 33.333 0.00 0.00 41.63 2.66
3075 3442 7.227156 ACATCTTATGTTCCAGACTTTCAGTT 58.773 34.615 0.00 0.00 41.63 3.16
3158 3531 8.818860 TGTATACAAACCCTTGAGTACAATAGT 58.181 33.333 2.20 0.00 35.28 2.12
3201 3574 7.464830 TCTTGGATTCGATAATCTTTTCGTC 57.535 36.000 0.00 0.00 41.18 4.20
3267 3641 2.113860 TATGTTCTTGGAGCAGGTGC 57.886 50.000 0.00 0.00 42.49 5.01
3355 3729 4.684757 GCCAATTATTAAATGCCCGGGTTT 60.685 41.667 24.63 18.09 0.00 3.27
3423 3797 2.045926 GCTGTCACCCATCCGCTT 60.046 61.111 0.00 0.00 0.00 4.68
3480 3854 2.290960 GGGAGTACATGGACAAAAGGCT 60.291 50.000 11.55 0.00 0.00 4.58
3497 3871 1.133976 AGCATTTTCGGATGGAGGGAG 60.134 52.381 0.00 0.00 0.00 4.30
3498 3872 0.918983 AGCATTTTCGGATGGAGGGA 59.081 50.000 0.00 0.00 0.00 4.20
3499 3873 1.312815 GAGCATTTTCGGATGGAGGG 58.687 55.000 0.00 0.00 0.00 4.30
3500 3874 0.940126 CGAGCATTTTCGGATGGAGG 59.060 55.000 0.00 0.00 36.95 4.30
3501 3875 1.594862 GACGAGCATTTTCGGATGGAG 59.405 52.381 0.00 0.00 44.57 3.86
3502 3876 1.066502 TGACGAGCATTTTCGGATGGA 60.067 47.619 0.00 0.00 44.57 3.41
3503 3877 1.368641 TGACGAGCATTTTCGGATGG 58.631 50.000 0.00 0.00 44.57 3.51
3504 3878 3.680642 AATGACGAGCATTTTCGGATG 57.319 42.857 0.00 0.00 44.68 3.51
3505 3879 5.811399 TTTAATGACGAGCATTTTCGGAT 57.189 34.783 12.08 0.00 44.68 4.18
3506 3880 5.614923 TTTTAATGACGAGCATTTTCGGA 57.385 34.783 12.08 0.00 44.68 4.55
3507 3881 9.825972 ATATATTTTAATGACGAGCATTTTCGG 57.174 29.630 12.08 0.00 44.68 4.30
3573 3947 9.316730 CCGAAAATATTTGTCATCAAAATGGAT 57.683 29.630 0.39 0.00 44.97 3.41
3574 3948 8.526978 TCCGAAAATATTTGTCATCAAAATGGA 58.473 29.630 0.39 0.00 44.97 3.41
3575 3949 8.700722 TCCGAAAATATTTGTCATCAAAATGG 57.299 30.769 0.39 0.00 44.97 3.16
3577 3951 9.316730 CCATCCGAAAATATTTGTCATCAAAAT 57.683 29.630 0.39 0.00 44.97 1.82
3578 3952 8.526978 TCCATCCGAAAATATTTGTCATCAAAA 58.473 29.630 0.39 0.00 44.97 2.44
3579 3953 8.060931 TCCATCCGAAAATATTTGTCATCAAA 57.939 30.769 0.39 0.00 45.71 2.69
3580 3954 7.201812 CCTCCATCCGAAAATATTTGTCATCAA 60.202 37.037 0.39 0.00 0.00 2.57
3581 3955 6.262944 CCTCCATCCGAAAATATTTGTCATCA 59.737 38.462 0.39 0.00 0.00 3.07
3582 3956 6.486657 TCCTCCATCCGAAAATATTTGTCATC 59.513 38.462 0.39 0.00 0.00 2.92
3583 3957 6.364701 TCCTCCATCCGAAAATATTTGTCAT 58.635 36.000 0.39 0.00 0.00 3.06
3584 3958 5.750524 TCCTCCATCCGAAAATATTTGTCA 58.249 37.500 0.39 0.00 0.00 3.58
3585 3959 6.318900 ACTTCCTCCATCCGAAAATATTTGTC 59.681 38.462 0.39 1.54 0.00 3.18
3586 3960 6.187682 ACTTCCTCCATCCGAAAATATTTGT 58.812 36.000 0.39 0.00 0.00 2.83
3587 3961 6.699575 ACTTCCTCCATCCGAAAATATTTG 57.300 37.500 0.39 0.00 0.00 2.32
3588 3962 7.343357 TGTACTTCCTCCATCCGAAAATATTT 58.657 34.615 0.00 0.00 0.00 1.40
3589 3963 6.895782 TGTACTTCCTCCATCCGAAAATATT 58.104 36.000 0.00 0.00 0.00 1.28
3590 3964 6.494666 TGTACTTCCTCCATCCGAAAATAT 57.505 37.500 0.00 0.00 0.00 1.28
3591 3965 5.943349 TGTACTTCCTCCATCCGAAAATA 57.057 39.130 0.00 0.00 0.00 1.40
3592 3966 4.837093 TGTACTTCCTCCATCCGAAAAT 57.163 40.909 0.00 0.00 0.00 1.82
3593 3967 4.627284 TTGTACTTCCTCCATCCGAAAA 57.373 40.909 0.00 0.00 0.00 2.29
3594 3968 4.469945 AGATTGTACTTCCTCCATCCGAAA 59.530 41.667 0.00 0.00 0.00 3.46
3595 3969 4.030913 AGATTGTACTTCCTCCATCCGAA 58.969 43.478 0.00 0.00 0.00 4.30
3596 3970 3.643237 AGATTGTACTTCCTCCATCCGA 58.357 45.455 0.00 0.00 0.00 4.55
3597 3971 4.122776 CAAGATTGTACTTCCTCCATCCG 58.877 47.826 0.00 0.00 0.00 4.18
3598 3972 5.104259 ACAAGATTGTACTTCCTCCATCC 57.896 43.478 0.00 0.00 40.16 3.51
3599 3973 5.119694 GGACAAGATTGTACTTCCTCCATC 58.880 45.833 0.47 0.00 42.43 3.51
3600 3974 4.383118 CGGACAAGATTGTACTTCCTCCAT 60.383 45.833 6.38 0.00 42.43 3.41
3601 3975 3.056107 CGGACAAGATTGTACTTCCTCCA 60.056 47.826 6.38 0.00 42.43 3.86
3602 3976 3.522553 CGGACAAGATTGTACTTCCTCC 58.477 50.000 6.38 0.00 42.43 4.30
3603 3977 3.522553 CCGGACAAGATTGTACTTCCTC 58.477 50.000 0.00 0.00 42.43 3.71
3604 3978 2.354805 GCCGGACAAGATTGTACTTCCT 60.355 50.000 5.05 0.00 42.43 3.36
3605 3979 2.007608 GCCGGACAAGATTGTACTTCC 58.992 52.381 5.05 0.00 42.43 3.46
3606 3980 2.007608 GGCCGGACAAGATTGTACTTC 58.992 52.381 5.05 0.00 42.43 3.01
3607 3981 1.349688 TGGCCGGACAAGATTGTACTT 59.650 47.619 8.12 0.00 42.43 2.24
3608 3982 0.981183 TGGCCGGACAAGATTGTACT 59.019 50.000 8.12 0.00 42.43 2.73
3609 3983 1.084289 GTGGCCGGACAAGATTGTAC 58.916 55.000 14.43 0.00 42.43 2.90
3610 3984 0.035820 GGTGGCCGGACAAGATTGTA 60.036 55.000 14.43 0.00 42.43 2.41
3611 3985 1.303317 GGTGGCCGGACAAGATTGT 60.303 57.895 14.43 0.00 45.65 2.71
3612 3986 0.893270 TTGGTGGCCGGACAAGATTG 60.893 55.000 14.43 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.