Multiple sequence alignment - TraesCS4B01G173200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G173200 chr4B 100.000 4977 0 0 1 4977 378765875 378770851 0.000000e+00 9191.0
1 TraesCS4B01G173200 chr4B 80.000 240 35 10 4 238 377386407 377386176 1.180000e-36 165.0
2 TraesCS4B01G173200 chr4B 100.000 72 0 0 5229 5300 378771103 378771174 3.330000e-27 134.0
3 TraesCS4B01G173200 chr4B 89.474 57 4 2 4 58 111799645 111799589 2.650000e-08 71.3
4 TraesCS4B01G173200 chr4D 92.353 2393 68 32 385 2709 303834392 303836737 0.000000e+00 3299.0
5 TraesCS4B01G173200 chr4D 98.462 1756 23 3 2720 4475 303836813 303838564 0.000000e+00 3090.0
6 TraesCS4B01G173200 chr4D 90.123 243 14 2 4717 4958 303838622 303838855 1.850000e-79 307.0
7 TraesCS4B01G173200 chr4D 95.604 91 2 2 2714 2804 24455798 24455886 1.540000e-30 145.0
8 TraesCS4B01G173200 chr4D 94.624 93 2 3 2717 2808 449455700 449455610 1.990000e-29 141.0
9 TraesCS4B01G173200 chr4D 93.617 94 4 2 2713 2806 10971619 10971528 7.160000e-29 139.0
10 TraesCS4B01G173200 chr4D 96.721 61 2 0 4496 4556 303838562 303838622 9.390000e-18 102.0
11 TraesCS4B01G173200 chr4A 97.640 1737 37 2 2822 4556 175411101 175409367 0.000000e+00 2977.0
12 TraesCS4B01G173200 chr4A 95.874 1115 32 6 1602 2709 175412434 175411327 0.000000e+00 1792.0
13 TraesCS4B01G173200 chr4A 90.609 969 32 13 649 1604 175413384 175412462 0.000000e+00 1230.0
14 TraesCS4B01G173200 chr4A 90.909 242 12 2 4717 4957 175409367 175409135 3.080000e-82 316.0
15 TraesCS4B01G173200 chr4A 83.386 319 17 12 366 660 175414854 175414548 4.070000e-66 263.0
16 TraesCS4B01G173200 chr6D 91.765 170 12 2 4555 4722 446126562 446126731 8.870000e-58 235.0
17 TraesCS4B01G173200 chr6D 89.595 173 14 3 4555 4725 449379201 449379031 3.210000e-52 217.0
18 TraesCS4B01G173200 chr7D 92.903 155 11 0 4555 4709 593702081 593702235 5.340000e-55 226.0
19 TraesCS4B01G173200 chr7D 92.857 154 11 0 4554 4707 530736111 530735958 1.920000e-54 224.0
20 TraesCS4B01G173200 chr7D 81.416 226 28 11 18 239 506809907 506810122 7.060000e-39 172.0
21 TraesCS4B01G173200 chr7D 90.541 74 5 2 4892 4963 638465129 638465202 4.370000e-16 97.1
22 TraesCS4B01G173200 chr7A 90.909 165 12 3 4553 4715 439813241 439813404 8.940000e-53 219.0
23 TraesCS4B01G173200 chr7A 94.253 87 4 1 2717 2803 34742914 34742829 1.200000e-26 132.0
24 TraesCS4B01G173200 chr7A 78.140 215 26 10 4 213 589116949 589116751 3.350000e-22 117.0
25 TraesCS4B01G173200 chr7A 88.636 88 8 2 4892 4977 727439385 727439298 7.260000e-19 106.0
26 TraesCS4B01G173200 chr7A 85.882 85 10 1 4895 4977 20120316 20120400 7.310000e-14 89.8
27 TraesCS4B01G173200 chr2B 90.058 171 14 3 4552 4720 41181019 41180850 8.940000e-53 219.0
28 TraesCS4B01G173200 chr2B 80.335 239 35 8 4 238 620633949 620634179 2.540000e-38 171.0
29 TraesCS4B01G173200 chr2B 93.103 87 4 2 282 367 624278892 624278807 5.570000e-25 126.0
30 TraesCS4B01G173200 chr2B 73.352 349 63 25 1062 1395 528829570 528829903 9.390000e-18 102.0
31 TraesCS4B01G173200 chr6B 90.000 170 14 3 4554 4721 14269113 14269281 3.210000e-52 217.0
32 TraesCS4B01G173200 chr6B 81.328 241 32 9 4 239 275215066 275214834 3.260000e-42 183.0
33 TraesCS4B01G173200 chr6B 89.583 96 9 1 273 368 679732899 679732993 2.590000e-23 121.0
34 TraesCS4B01G173200 chr6B 89.362 94 9 1 279 371 472233590 472233683 3.350000e-22 117.0
35 TraesCS4B01G173200 chr3A 89.941 169 15 2 4554 4720 303830836 303831004 3.210000e-52 217.0
36 TraesCS4B01G173200 chr1D 89.595 173 12 4 4552 4720 41572987 41573157 1.160000e-51 215.0
37 TraesCS4B01G173200 chr1D 90.000 90 8 1 282 371 17018030 17018118 1.210000e-21 115.0
38 TraesCS4B01G173200 chr7B 82.158 241 30 9 4 239 329308035 329307803 1.510000e-45 195.0
39 TraesCS4B01G173200 chr5A 96.552 87 1 2 2717 2803 38014621 38014705 5.530000e-30 143.0
40 TraesCS4B01G173200 chr5A 92.135 89 6 1 282 370 652996922 652996835 2.000000e-24 124.0
41 TraesCS4B01G173200 chr5D 95.506 89 2 2 2717 2805 56448545 56448459 1.990000e-29 141.0
42 TraesCS4B01G173200 chr5D 91.860 86 3 1 282 367 469170755 469170836 3.350000e-22 117.0
43 TraesCS4B01G173200 chr5D 89.873 79 6 1 4887 4963 437569924 437569846 3.380000e-17 100.0
44 TraesCS4B01G173200 chr1A 94.505 91 4 1 2713 2803 507880804 507880715 7.160000e-29 139.0
45 TraesCS4B01G173200 chr1A 78.771 179 24 9 65 239 521249457 521249289 2.020000e-19 108.0
46 TraesCS4B01G173200 chr3D 91.837 98 5 3 2709 2805 47483349 47483254 3.330000e-27 134.0
47 TraesCS4B01G173200 chr3D 88.298 94 10 1 281 374 275776872 275776964 1.560000e-20 111.0
48 TraesCS4B01G173200 chr3D 88.608 79 7 1 4893 4969 568170409 568170331 1.570000e-15 95.3
49 TraesCS4B01G173200 chr3D 71.787 319 67 19 1076 1384 9450935 9450630 9.520000e-08 69.4
50 TraesCS4B01G173200 chr2D 92.135 89 7 0 282 370 491373895 491373807 5.570000e-25 126.0
51 TraesCS4B01G173200 chr2D 73.156 339 65 21 1062 1387 449556399 449556074 1.210000e-16 99.0
52 TraesCS4B01G173200 chr3B 90.805 87 8 0 282 368 155416917 155417003 3.350000e-22 117.0
53 TraesCS4B01G173200 chr2A 73.199 347 67 21 1062 1395 593443431 593443764 9.390000e-18 102.0
54 TraesCS4B01G173200 chr6A 78.912 147 22 7 69 214 595787404 595787542 2.030000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G173200 chr4B 378765875 378771174 5299 False 4662.5 9191 100.00000 1 5300 2 chr4B.!!$F1 5299
1 TraesCS4B01G173200 chr4D 303834392 303838855 4463 False 1699.5 3299 94.41475 385 4958 4 chr4D.!!$F2 4573
2 TraesCS4B01G173200 chr4A 175409135 175414854 5719 True 1315.6 2977 91.68360 366 4957 5 chr4A.!!$R1 4591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 420 0.165944 GTTTCACGTGATTCCTGCGG 59.834 55.000 20.80 0.00 0.00 5.69 F
420 421 0.250124 TTTCACGTGATTCCTGCGGT 60.250 50.000 20.80 0.00 0.00 5.68 F
459 476 0.397535 ATGCCGGCTCCAAAATCCAT 60.398 50.000 29.70 5.23 0.00 3.41 F
739 1959 0.818938 TCGTAAAGCACCCATCGCTA 59.181 50.000 0.00 0.00 39.29 4.26 F
1494 2790 0.533308 TGTTCCGACCGGAGTTTTGG 60.533 55.000 9.46 0.00 46.06 3.28 F
1495 2791 0.533531 GTTCCGACCGGAGTTTTGGT 60.534 55.000 9.46 0.00 46.06 3.67 F
2118 3457 1.006102 ACGAAGTTCCTGCCACTCG 60.006 57.895 0.00 0.00 37.78 4.18 F
2577 3916 1.445582 CGTTTTCTCTCGTCCCCCG 60.446 63.158 0.00 0.00 38.13 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 2773 0.180878 AACCAAAACTCCGGTCGGAA 59.819 50.000 13.36 0.00 44.66 4.30 R
1478 2774 0.249996 GAACCAAAACTCCGGTCGGA 60.250 55.000 11.83 11.83 42.90 4.55 R
1479 2775 0.250166 AGAACCAAAACTCCGGTCGG 60.250 55.000 0.00 2.52 33.17 4.79 R
2102 3441 0.250338 AACCGAGTGGCAGGAACTTC 60.250 55.000 0.00 0.00 39.70 3.01 R
2711 4050 0.324091 GGGACGGAGGGAGTACTTGA 60.324 60.000 0.00 0.00 0.00 3.02 R
2713 4052 0.338814 ATGGGACGGAGGGAGTACTT 59.661 55.000 0.00 0.00 0.00 2.24 R
3790 5293 3.074538 ACCTACCTGAGTCCTTGCAAAAT 59.925 43.478 0.00 0.00 0.00 1.82 R
4549 6054 3.024547 TGGAAACAGAGGGAGTAGATCG 58.975 50.000 0.00 0.00 35.01 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.949352 GCCTAAATGATGAATGAAGGAGAA 57.051 37.500 0.00 0.00 0.00 2.87
24 25 7.338800 GCCTAAATGATGAATGAAGGAGAAA 57.661 36.000 0.00 0.00 0.00 2.52
25 26 7.424001 GCCTAAATGATGAATGAAGGAGAAAG 58.576 38.462 0.00 0.00 0.00 2.62
26 27 7.284034 GCCTAAATGATGAATGAAGGAGAAAGA 59.716 37.037 0.00 0.00 0.00 2.52
27 28 9.182214 CCTAAATGATGAATGAAGGAGAAAGAA 57.818 33.333 0.00 0.00 0.00 2.52
29 30 8.647256 AAATGATGAATGAAGGAGAAAGAACT 57.353 30.769 0.00 0.00 0.00 3.01
30 31 7.862512 ATGATGAATGAAGGAGAAAGAACTC 57.137 36.000 0.00 0.00 36.31 3.01
31 32 5.871524 TGATGAATGAAGGAGAAAGAACTCG 59.128 40.000 0.00 0.00 37.74 4.18
32 33 5.215252 TGAATGAAGGAGAAAGAACTCGT 57.785 39.130 0.00 0.00 37.74 4.18
33 34 6.340962 TGAATGAAGGAGAAAGAACTCGTA 57.659 37.500 0.00 0.00 37.74 3.43
34 35 6.755206 TGAATGAAGGAGAAAGAACTCGTAA 58.245 36.000 0.00 0.00 37.74 3.18
35 36 6.868864 TGAATGAAGGAGAAAGAACTCGTAAG 59.131 38.462 0.00 0.00 37.74 2.34
51 52 3.565516 CGTAAGAAAAAGCTTGCTTCCC 58.434 45.455 14.81 1.67 43.02 3.97
52 53 3.253432 CGTAAGAAAAAGCTTGCTTCCCT 59.747 43.478 14.81 3.80 43.02 4.20
53 54 4.261614 CGTAAGAAAAAGCTTGCTTCCCTT 60.262 41.667 14.81 12.94 43.02 3.95
54 55 5.048991 CGTAAGAAAAAGCTTGCTTCCCTTA 60.049 40.000 14.81 12.13 43.02 2.69
55 56 6.349363 CGTAAGAAAAAGCTTGCTTCCCTTAT 60.349 38.462 14.81 0.00 43.02 1.73
56 57 6.425210 AAGAAAAAGCTTGCTTCCCTTATT 57.575 33.333 14.81 4.17 0.00 1.40
57 58 6.425210 AGAAAAAGCTTGCTTCCCTTATTT 57.575 33.333 14.81 4.50 0.00 1.40
58 59 7.539034 AGAAAAAGCTTGCTTCCCTTATTTA 57.461 32.000 14.81 0.00 0.00 1.40
59 60 7.962441 AGAAAAAGCTTGCTTCCCTTATTTAA 58.038 30.769 14.81 0.00 0.00 1.52
60 61 8.428852 AGAAAAAGCTTGCTTCCCTTATTTAAA 58.571 29.630 14.81 0.00 0.00 1.52
61 62 8.972458 AAAAAGCTTGCTTCCCTTATTTAAAA 57.028 26.923 8.39 0.00 0.00 1.52
62 63 8.972458 AAAAGCTTGCTTCCCTTATTTAAAAA 57.028 26.923 8.39 0.00 0.00 1.94
152 153 8.747538 TTAAAGATAAGGCTAAAAGATGACCC 57.252 34.615 0.00 0.00 0.00 4.46
153 154 5.975988 AGATAAGGCTAAAAGATGACCCA 57.024 39.130 0.00 0.00 0.00 4.51
154 155 6.521527 AGATAAGGCTAAAAGATGACCCAT 57.478 37.500 0.00 0.00 0.00 4.00
155 156 6.538263 AGATAAGGCTAAAAGATGACCCATC 58.462 40.000 0.00 0.00 40.80 3.51
156 157 3.584733 AGGCTAAAAGATGACCCATCC 57.415 47.619 3.55 0.00 41.36 3.51
157 158 2.852449 AGGCTAAAAGATGACCCATCCA 59.148 45.455 3.55 0.00 41.36 3.41
158 159 3.464833 AGGCTAAAAGATGACCCATCCAT 59.535 43.478 3.55 0.00 41.36 3.41
159 160 4.078980 AGGCTAAAAGATGACCCATCCATT 60.079 41.667 3.55 2.72 41.36 3.16
160 161 4.038402 GGCTAAAAGATGACCCATCCATTG 59.962 45.833 3.55 0.00 41.36 2.82
161 162 4.646492 GCTAAAAGATGACCCATCCATTGT 59.354 41.667 3.55 0.00 41.36 2.71
162 163 5.827797 GCTAAAAGATGACCCATCCATTGTA 59.172 40.000 3.55 0.00 41.36 2.41
163 164 6.016777 GCTAAAAGATGACCCATCCATTGTAG 60.017 42.308 3.55 3.57 41.36 2.74
164 165 5.715439 AAAGATGACCCATCCATTGTAGA 57.285 39.130 3.55 0.00 41.36 2.59
165 166 4.696479 AGATGACCCATCCATTGTAGAC 57.304 45.455 3.55 0.00 41.36 2.59
166 167 4.302067 AGATGACCCATCCATTGTAGACT 58.698 43.478 3.55 0.00 41.36 3.24
167 168 4.346418 AGATGACCCATCCATTGTAGACTC 59.654 45.833 3.55 0.00 41.36 3.36
168 169 3.724478 TGACCCATCCATTGTAGACTCT 58.276 45.455 0.00 0.00 0.00 3.24
169 170 4.104086 TGACCCATCCATTGTAGACTCTT 58.896 43.478 0.00 0.00 0.00 2.85
170 171 4.536090 TGACCCATCCATTGTAGACTCTTT 59.464 41.667 0.00 0.00 0.00 2.52
171 172 5.014123 TGACCCATCCATTGTAGACTCTTTT 59.986 40.000 0.00 0.00 0.00 2.27
172 173 5.892348 ACCCATCCATTGTAGACTCTTTTT 58.108 37.500 0.00 0.00 0.00 1.94
230 231 9.817809 GATGAGACTAAGATAAACCATTGTACA 57.182 33.333 0.00 0.00 0.00 2.90
234 235 8.893727 AGACTAAGATAAACCATTGTACATTGC 58.106 33.333 11.46 0.00 0.00 3.56
235 236 7.996385 ACTAAGATAAACCATTGTACATTGCC 58.004 34.615 11.46 0.00 0.00 4.52
236 237 5.852282 AGATAAACCATTGTACATTGCCC 57.148 39.130 11.46 0.00 0.00 5.36
237 238 5.518865 AGATAAACCATTGTACATTGCCCT 58.481 37.500 11.46 1.92 0.00 5.19
238 239 6.668645 AGATAAACCATTGTACATTGCCCTA 58.331 36.000 11.46 3.74 0.00 3.53
239 240 6.546034 AGATAAACCATTGTACATTGCCCTAC 59.454 38.462 11.46 2.93 0.00 3.18
240 241 3.012934 ACCATTGTACATTGCCCTACC 57.987 47.619 11.46 0.00 0.00 3.18
241 242 2.310349 ACCATTGTACATTGCCCTACCA 59.690 45.455 11.46 0.00 0.00 3.25
242 243 2.687935 CCATTGTACATTGCCCTACCAC 59.312 50.000 11.46 0.00 0.00 4.16
243 244 3.620488 CATTGTACATTGCCCTACCACT 58.380 45.455 4.90 0.00 0.00 4.00
244 245 3.799432 TTGTACATTGCCCTACCACTT 57.201 42.857 0.00 0.00 0.00 3.16
245 246 3.066291 TGTACATTGCCCTACCACTTG 57.934 47.619 0.00 0.00 0.00 3.16
246 247 2.640332 TGTACATTGCCCTACCACTTGA 59.360 45.455 0.00 0.00 0.00 3.02
247 248 2.969821 ACATTGCCCTACCACTTGAA 57.030 45.000 0.00 0.00 0.00 2.69
248 249 3.456380 ACATTGCCCTACCACTTGAAT 57.544 42.857 0.00 0.00 0.00 2.57
249 250 3.356290 ACATTGCCCTACCACTTGAATC 58.644 45.455 0.00 0.00 0.00 2.52
250 251 3.245229 ACATTGCCCTACCACTTGAATCA 60.245 43.478 0.00 0.00 0.00 2.57
251 252 3.517296 TTGCCCTACCACTTGAATCAA 57.483 42.857 0.00 0.00 0.00 2.57
252 253 2.790433 TGCCCTACCACTTGAATCAAC 58.210 47.619 0.00 0.00 0.00 3.18
253 254 2.375174 TGCCCTACCACTTGAATCAACT 59.625 45.455 0.00 0.00 0.00 3.16
254 255 3.585289 TGCCCTACCACTTGAATCAACTA 59.415 43.478 0.00 0.00 0.00 2.24
255 256 3.939592 GCCCTACCACTTGAATCAACTAC 59.060 47.826 0.00 0.00 0.00 2.73
256 257 4.181578 CCCTACCACTTGAATCAACTACG 58.818 47.826 0.00 0.00 0.00 3.51
257 258 4.181578 CCTACCACTTGAATCAACTACGG 58.818 47.826 0.00 0.00 0.00 4.02
258 259 4.081862 CCTACCACTTGAATCAACTACGGA 60.082 45.833 0.00 0.00 0.00 4.69
259 260 4.345859 ACCACTTGAATCAACTACGGAA 57.654 40.909 0.00 0.00 0.00 4.30
260 261 4.710324 ACCACTTGAATCAACTACGGAAA 58.290 39.130 0.00 0.00 0.00 3.13
261 262 5.313712 ACCACTTGAATCAACTACGGAAAT 58.686 37.500 0.00 0.00 0.00 2.17
262 263 5.181245 ACCACTTGAATCAACTACGGAAATG 59.819 40.000 0.00 0.00 0.00 2.32
263 264 5.181245 CCACTTGAATCAACTACGGAAATGT 59.819 40.000 0.00 0.00 0.00 2.71
264 265 6.293955 CCACTTGAATCAACTACGGAAATGTT 60.294 38.462 0.00 0.00 0.00 2.71
265 266 7.138736 CACTTGAATCAACTACGGAAATGTTT 58.861 34.615 0.00 0.00 0.00 2.83
266 267 7.647715 CACTTGAATCAACTACGGAAATGTTTT 59.352 33.333 0.00 0.00 0.00 2.43
267 268 7.647715 ACTTGAATCAACTACGGAAATGTTTTG 59.352 33.333 0.00 0.00 0.00 2.44
268 269 7.033530 TGAATCAACTACGGAAATGTTTTGT 57.966 32.000 0.00 0.00 0.00 2.83
269 270 7.136119 TGAATCAACTACGGAAATGTTTTGTC 58.864 34.615 0.00 0.00 0.00 3.18
270 271 6.627395 ATCAACTACGGAAATGTTTTGTCA 57.373 33.333 0.00 0.00 0.00 3.58
271 272 6.055231 TCAACTACGGAAATGTTTTGTCAG 57.945 37.500 0.00 0.00 0.00 3.51
272 273 5.587043 TCAACTACGGAAATGTTTTGTCAGT 59.413 36.000 0.00 0.00 0.00 3.41
273 274 6.094325 TCAACTACGGAAATGTTTTGTCAGTT 59.906 34.615 0.00 0.00 0.00 3.16
274 275 6.445357 ACTACGGAAATGTTTTGTCAGTTT 57.555 33.333 0.00 0.00 0.00 2.66
275 276 6.262601 ACTACGGAAATGTTTTGTCAGTTTG 58.737 36.000 0.00 0.00 0.00 2.93
276 277 5.066968 ACGGAAATGTTTTGTCAGTTTGT 57.933 34.783 0.00 0.00 0.00 2.83
277 278 6.197364 ACGGAAATGTTTTGTCAGTTTGTA 57.803 33.333 0.00 0.00 0.00 2.41
278 279 6.801575 ACGGAAATGTTTTGTCAGTTTGTAT 58.198 32.000 0.00 0.00 0.00 2.29
279 280 6.695278 ACGGAAATGTTTTGTCAGTTTGTATG 59.305 34.615 0.00 0.00 0.00 2.39
280 281 6.695278 CGGAAATGTTTTGTCAGTTTGTATGT 59.305 34.615 0.00 0.00 0.00 2.29
281 282 7.221838 CGGAAATGTTTTGTCAGTTTGTATGTT 59.778 33.333 0.00 0.00 0.00 2.71
282 283 9.522804 GGAAATGTTTTGTCAGTTTGTATGTTA 57.477 29.630 0.00 0.00 0.00 2.41
285 286 9.730420 AATGTTTTGTCAGTTTGTATGTTACTC 57.270 29.630 0.00 0.00 0.00 2.59
286 287 7.699566 TGTTTTGTCAGTTTGTATGTTACTCC 58.300 34.615 0.00 0.00 0.00 3.85
287 288 6.870971 TTTGTCAGTTTGTATGTTACTCCC 57.129 37.500 0.00 0.00 0.00 4.30
288 289 5.818678 TGTCAGTTTGTATGTTACTCCCT 57.181 39.130 0.00 0.00 0.00 4.20
289 290 5.790593 TGTCAGTTTGTATGTTACTCCCTC 58.209 41.667 0.00 0.00 0.00 4.30
290 291 5.176592 GTCAGTTTGTATGTTACTCCCTCC 58.823 45.833 0.00 0.00 0.00 4.30
291 292 4.081862 TCAGTTTGTATGTTACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
292 293 3.836562 AGTTTGTATGTTACTCCCTCCGT 59.163 43.478 0.00 0.00 0.00 4.69
293 294 4.285260 AGTTTGTATGTTACTCCCTCCGTT 59.715 41.667 0.00 0.00 0.00 4.44
294 295 4.895668 TTGTATGTTACTCCCTCCGTTT 57.104 40.909 0.00 0.00 0.00 3.60
295 296 4.460948 TGTATGTTACTCCCTCCGTTTC 57.539 45.455 0.00 0.00 0.00 2.78
296 297 3.833650 TGTATGTTACTCCCTCCGTTTCA 59.166 43.478 0.00 0.00 0.00 2.69
297 298 4.283978 TGTATGTTACTCCCTCCGTTTCAA 59.716 41.667 0.00 0.00 0.00 2.69
298 299 3.842007 TGTTACTCCCTCCGTTTCAAA 57.158 42.857 0.00 0.00 0.00 2.69
299 300 4.153673 TGTTACTCCCTCCGTTTCAAAA 57.846 40.909 0.00 0.00 0.00 2.44
300 301 4.721132 TGTTACTCCCTCCGTTTCAAAAT 58.279 39.130 0.00 0.00 0.00 1.82
301 302 5.867330 TGTTACTCCCTCCGTTTCAAAATA 58.133 37.500 0.00 0.00 0.00 1.40
302 303 5.935789 TGTTACTCCCTCCGTTTCAAAATAG 59.064 40.000 0.00 0.00 0.00 1.73
303 304 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
304 305 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
305 306 5.816682 ACTCCCTCCGTTTCAAAATAGATT 58.183 37.500 0.00 0.00 0.00 2.40
306 307 6.954232 ACTCCCTCCGTTTCAAAATAGATTA 58.046 36.000 0.00 0.00 0.00 1.75
307 308 6.822170 ACTCCCTCCGTTTCAAAATAGATTAC 59.178 38.462 0.00 0.00 0.00 1.89
308 309 6.117488 TCCCTCCGTTTCAAAATAGATTACC 58.883 40.000 0.00 0.00 0.00 2.85
309 310 5.298527 CCCTCCGTTTCAAAATAGATTACCC 59.701 44.000 0.00 0.00 0.00 3.69
310 311 5.883673 CCTCCGTTTCAAAATAGATTACCCA 59.116 40.000 0.00 0.00 0.00 4.51
311 312 6.376018 CCTCCGTTTCAAAATAGATTACCCAA 59.624 38.462 0.00 0.00 0.00 4.12
312 313 7.148355 TCCGTTTCAAAATAGATTACCCAAC 57.852 36.000 0.00 0.00 0.00 3.77
313 314 6.943718 TCCGTTTCAAAATAGATTACCCAACT 59.056 34.615 0.00 0.00 0.00 3.16
314 315 7.449086 TCCGTTTCAAAATAGATTACCCAACTT 59.551 33.333 0.00 0.00 0.00 2.66
315 316 8.085909 CCGTTTCAAAATAGATTACCCAACTTT 58.914 33.333 0.00 0.00 0.00 2.66
343 344 8.370266 ACTACACATAGTATAAAGTTGGGTCA 57.630 34.615 0.00 0.00 40.02 4.02
344 345 8.989131 ACTACACATAGTATAAAGTTGGGTCAT 58.011 33.333 0.00 0.00 40.02 3.06
345 346 9.832445 CTACACATAGTATAAAGTTGGGTCATT 57.168 33.333 0.00 0.00 30.93 2.57
357 358 7.707774 AAGTTGGGTCATTTATTTTGAAACG 57.292 32.000 0.00 0.00 0.00 3.60
358 359 6.220201 AGTTGGGTCATTTATTTTGAAACGG 58.780 36.000 0.00 0.00 0.00 4.44
359 360 6.041069 AGTTGGGTCATTTATTTTGAAACGGA 59.959 34.615 0.00 0.00 0.00 4.69
360 361 6.019779 TGGGTCATTTATTTTGAAACGGAG 57.980 37.500 0.00 0.00 0.00 4.63
361 362 5.047660 TGGGTCATTTATTTTGAAACGGAGG 60.048 40.000 0.00 0.00 0.00 4.30
362 363 5.407502 GGTCATTTATTTTGAAACGGAGGG 58.592 41.667 0.00 0.00 0.00 4.30
363 364 5.184287 GGTCATTTATTTTGAAACGGAGGGA 59.816 40.000 0.00 0.00 0.00 4.20
364 365 6.322491 GTCATTTATTTTGAAACGGAGGGAG 58.678 40.000 0.00 0.00 0.00 4.30
365 366 6.007703 TCATTTATTTTGAAACGGAGGGAGT 58.992 36.000 0.00 0.00 0.00 3.85
366 367 7.120138 GTCATTTATTTTGAAACGGAGGGAGTA 59.880 37.037 0.00 0.00 0.00 2.59
367 368 7.335924 TCATTTATTTTGAAACGGAGGGAGTAG 59.664 37.037 0.00 0.00 0.00 2.57
368 369 4.635699 ATTTTGAAACGGAGGGAGTAGT 57.364 40.909 0.00 0.00 0.00 2.73
369 370 5.750352 ATTTTGAAACGGAGGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
370 371 5.750352 TTTTGAAACGGAGGGAGTAGTAT 57.250 39.130 0.00 0.00 0.00 2.12
371 372 5.750352 TTTGAAACGGAGGGAGTAGTATT 57.250 39.130 0.00 0.00 0.00 1.89
372 373 5.750352 TTGAAACGGAGGGAGTAGTATTT 57.250 39.130 0.00 0.00 0.00 1.40
373 374 6.855763 TTGAAACGGAGGGAGTAGTATTTA 57.144 37.500 0.00 0.00 0.00 1.40
378 379 6.610075 ACGGAGGGAGTAGTATTTAAACAA 57.390 37.500 0.00 0.00 0.00 2.83
413 414 4.606232 CGACACTCAAGTTTCACGTGATTC 60.606 45.833 20.80 14.96 36.12 2.52
418 419 1.148310 AGTTTCACGTGATTCCTGCG 58.852 50.000 20.80 0.00 0.00 5.18
419 420 0.165944 GTTTCACGTGATTCCTGCGG 59.834 55.000 20.80 0.00 0.00 5.69
420 421 0.250124 TTTCACGTGATTCCTGCGGT 60.250 50.000 20.80 0.00 0.00 5.68
421 422 0.948623 TTCACGTGATTCCTGCGGTG 60.949 55.000 20.80 0.00 0.00 4.94
422 423 2.742372 ACGTGATTCCTGCGGTGC 60.742 61.111 0.00 0.00 0.00 5.01
423 424 2.741985 CGTGATTCCTGCGGTGCA 60.742 61.111 0.00 0.00 36.92 4.57
450 467 4.864334 CAGGTGGATGCCGGCTCC 62.864 72.222 29.70 28.72 0.00 4.70
452 469 4.424711 GGTGGATGCCGGCTCCAA 62.425 66.667 34.63 22.34 44.19 3.53
453 470 2.361104 GTGGATGCCGGCTCCAAA 60.361 61.111 34.63 19.62 44.19 3.28
454 471 1.976474 GTGGATGCCGGCTCCAAAA 60.976 57.895 34.63 19.06 44.19 2.44
455 472 1.000233 TGGATGCCGGCTCCAAAAT 60.000 52.632 32.45 17.81 39.83 1.82
456 473 1.037030 TGGATGCCGGCTCCAAAATC 61.037 55.000 32.45 23.61 39.83 2.17
457 474 1.735973 GATGCCGGCTCCAAAATCC 59.264 57.895 29.70 2.22 0.00 3.01
458 475 1.000233 ATGCCGGCTCCAAAATCCA 60.000 52.632 29.70 2.45 0.00 3.41
459 476 0.397535 ATGCCGGCTCCAAAATCCAT 60.398 50.000 29.70 5.23 0.00 3.41
462 479 1.185315 CCGGCTCCAAAATCCATTGT 58.815 50.000 0.00 0.00 0.00 2.71
465 482 2.752354 CGGCTCCAAAATCCATTGTACA 59.248 45.455 0.00 0.00 0.00 2.90
579 615 3.460857 AATAGCGAGGACAGGTGATTC 57.539 47.619 0.00 0.00 0.00 2.52
580 616 1.847328 TAGCGAGGACAGGTGATTCA 58.153 50.000 0.00 0.00 0.00 2.57
581 617 1.198713 AGCGAGGACAGGTGATTCAT 58.801 50.000 0.00 0.00 0.00 2.57
582 618 2.388735 AGCGAGGACAGGTGATTCATA 58.611 47.619 0.00 0.00 0.00 2.15
726 1944 5.404366 CGAAAACAGTTCTCCATCTCGTAAA 59.596 40.000 0.00 0.00 0.00 2.01
739 1959 0.818938 TCGTAAAGCACCCATCGCTA 59.181 50.000 0.00 0.00 39.29 4.26
782 2018 1.679680 GCGATACCAGTGCCAGTACTA 59.320 52.381 0.00 0.00 0.00 1.82
783 2019 2.287668 GCGATACCAGTGCCAGTACTAG 60.288 54.545 0.00 0.00 0.00 2.57
784 2020 2.293677 CGATACCAGTGCCAGTACTAGG 59.706 54.545 0.00 0.70 0.00 3.02
785 2021 3.563223 GATACCAGTGCCAGTACTAGGA 58.437 50.000 13.57 0.00 0.00 2.94
786 2022 1.853963 ACCAGTGCCAGTACTAGGAG 58.146 55.000 13.57 0.00 0.00 3.69
787 2023 1.077334 ACCAGTGCCAGTACTAGGAGT 59.923 52.381 13.57 0.23 0.00 3.85
788 2024 2.310945 ACCAGTGCCAGTACTAGGAGTA 59.689 50.000 13.57 0.00 0.00 2.59
823 2059 4.636435 CCAAAGCACCCGGTCCGT 62.636 66.667 11.06 0.00 0.00 4.69
824 2060 3.047877 CAAAGCACCCGGTCCGTC 61.048 66.667 11.06 0.00 0.00 4.79
825 2061 4.324991 AAAGCACCCGGTCCGTCC 62.325 66.667 11.06 0.00 0.00 4.79
846 2082 2.844348 CCTAATACACTCCCCCACACTT 59.156 50.000 0.00 0.00 0.00 3.16
873 2109 2.266055 CTCCCCACTTCACCTCGC 59.734 66.667 0.00 0.00 0.00 5.03
895 2131 2.103143 CACGCACGCCAAAAACCA 59.897 55.556 0.00 0.00 0.00 3.67
1402 2664 3.325753 AGTGCCCCTCTGCTGTCC 61.326 66.667 0.00 0.00 0.00 4.02
1405 2667 3.791586 GCCCCTCTGCTGTCCTCC 61.792 72.222 0.00 0.00 0.00 4.30
1451 2718 7.396540 AGATTAGGTTTTGATGCTTTTCGAT 57.603 32.000 0.00 0.00 0.00 3.59
1469 2765 2.030946 CGATCCAGCGGATGTTCTTTTC 59.969 50.000 13.68 0.00 43.27 2.29
1472 2768 2.028839 TCCAGCGGATGTTCTTTTCGTA 60.029 45.455 0.00 0.00 0.00 3.43
1473 2769 2.739913 CCAGCGGATGTTCTTTTCGTAA 59.260 45.455 0.00 0.00 0.00 3.18
1474 2770 3.374058 CCAGCGGATGTTCTTTTCGTAAT 59.626 43.478 0.00 0.00 0.00 1.89
1475 2771 4.142687 CCAGCGGATGTTCTTTTCGTAATT 60.143 41.667 0.00 0.00 0.00 1.40
1476 2772 4.788100 CAGCGGATGTTCTTTTCGTAATTG 59.212 41.667 0.00 0.00 0.00 2.32
1477 2773 4.454504 AGCGGATGTTCTTTTCGTAATTGT 59.545 37.500 0.00 0.00 0.00 2.71
1478 2774 5.048991 AGCGGATGTTCTTTTCGTAATTGTT 60.049 36.000 0.00 0.00 0.00 2.83
1479 2775 5.283012 GCGGATGTTCTTTTCGTAATTGTTC 59.717 40.000 0.00 0.00 0.00 3.18
1480 2776 5.793457 CGGATGTTCTTTTCGTAATTGTTCC 59.207 40.000 0.00 0.00 0.00 3.62
1481 2777 5.793457 GGATGTTCTTTTCGTAATTGTTCCG 59.207 40.000 0.00 0.00 0.00 4.30
1482 2778 5.987777 TGTTCTTTTCGTAATTGTTCCGA 57.012 34.783 0.00 0.00 0.00 4.55
1483 2779 5.740406 TGTTCTTTTCGTAATTGTTCCGAC 58.260 37.500 0.00 0.00 0.00 4.79
1484 2780 4.996062 TCTTTTCGTAATTGTTCCGACC 57.004 40.909 0.00 0.00 0.00 4.79
1485 2781 3.429543 TCTTTTCGTAATTGTTCCGACCG 59.570 43.478 0.00 0.00 0.00 4.79
1486 2782 1.712401 TTCGTAATTGTTCCGACCGG 58.288 50.000 0.00 0.00 0.00 5.28
1487 2783 0.887247 TCGTAATTGTTCCGACCGGA 59.113 50.000 9.46 7.11 43.52 5.14
1488 2784 1.135315 TCGTAATTGTTCCGACCGGAG 60.135 52.381 9.46 0.51 46.06 4.63
1489 2785 1.403249 CGTAATTGTTCCGACCGGAGT 60.403 52.381 9.46 0.00 46.06 3.85
1490 2786 2.691927 GTAATTGTTCCGACCGGAGTT 58.308 47.619 9.46 8.07 46.06 3.01
1491 2787 2.265589 AATTGTTCCGACCGGAGTTT 57.734 45.000 9.46 2.15 46.06 2.66
1492 2788 2.265589 ATTGTTCCGACCGGAGTTTT 57.734 45.000 9.46 0.00 46.06 2.43
1493 2789 1.301423 TTGTTCCGACCGGAGTTTTG 58.699 50.000 9.46 0.00 46.06 2.44
1494 2790 0.533308 TGTTCCGACCGGAGTTTTGG 60.533 55.000 9.46 0.00 46.06 3.28
1495 2791 0.533531 GTTCCGACCGGAGTTTTGGT 60.534 55.000 9.46 0.00 46.06 3.67
1592 2892 8.236585 TGTAGATGTAAATTCATCATTTGGGG 57.763 34.615 9.18 0.00 44.46 4.96
1593 2893 6.736110 AGATGTAAATTCATCATTTGGGGG 57.264 37.500 9.18 0.00 44.46 5.40
1725 3058 5.874895 TTGATTGATCTGTTTGCTCTGAG 57.125 39.130 0.00 0.00 0.00 3.35
1726 3059 4.903054 TGATTGATCTGTTTGCTCTGAGT 58.097 39.130 6.53 0.00 0.00 3.41
1727 3060 5.311265 TGATTGATCTGTTTGCTCTGAGTT 58.689 37.500 6.53 0.00 0.00 3.01
2058 3397 2.097954 GCACATTCCATTGATCGCTTGA 59.902 45.455 0.00 0.00 0.00 3.02
2063 3402 2.367486 TCCATTGATCGCTTGATTGCA 58.633 42.857 0.00 0.00 30.70 4.08
2074 3413 3.425193 CGCTTGATTGCACAGGTAAAAAC 59.575 43.478 0.00 0.00 0.00 2.43
2102 3441 6.071896 ACTCTGGATATACATACATGGACACG 60.072 42.308 0.00 0.00 0.00 4.49
2118 3457 1.006102 ACGAAGTTCCTGCCACTCG 60.006 57.895 0.00 0.00 37.78 4.18
2413 3752 6.437094 GGAGGTAGTCGTCAAACATATAGTC 58.563 44.000 0.00 0.00 0.00 2.59
2453 3792 4.226761 GCAAAGTTCTACAATTCAACCGG 58.773 43.478 0.00 0.00 0.00 5.28
2457 3796 6.549912 AAGTTCTACAATTCAACCGGTTAC 57.450 37.500 21.79 10.49 0.00 2.50
2472 3811 6.049955 ACCGGTTACTGGGATGAATATATG 57.950 41.667 15.39 0.00 0.00 1.78
2478 3817 4.251169 ACTGGGATGAATATATGTGGGGT 58.749 43.478 0.00 0.00 0.00 4.95
2550 3889 1.826720 ACGGATGCCAATCTTGCAAAT 59.173 42.857 0.00 0.00 42.92 2.32
2551 3890 2.159198 ACGGATGCCAATCTTGCAAATC 60.159 45.455 0.00 0.00 42.92 2.17
2577 3916 1.445582 CGTTTTCTCTCGTCCCCCG 60.446 63.158 0.00 0.00 38.13 5.73
2640 3979 9.550406 GGTGCACAGGTAAATATATTAGTGTAA 57.450 33.333 20.43 0.00 0.00 2.41
2660 3999 8.845942 GTGTAACTTGGTTTCGTTTAATTCTT 57.154 30.769 0.00 0.00 0.00 2.52
2661 4000 8.739461 GTGTAACTTGGTTTCGTTTAATTCTTG 58.261 33.333 0.00 0.00 0.00 3.02
2692 4031 2.033372 CATGCTGACCCATTGGCATTA 58.967 47.619 0.00 0.00 42.49 1.90
2709 4048 7.822161 TGGCATTATAGTTTGCATGATACTT 57.178 32.000 0.00 0.00 40.66 2.24
2710 4049 7.650890 TGGCATTATAGTTTGCATGATACTTG 58.349 34.615 0.00 0.00 40.66 3.16
2711 4050 7.285172 TGGCATTATAGTTTGCATGATACTTGT 59.715 33.333 0.00 0.00 40.66 3.16
2712 4051 7.805071 GGCATTATAGTTTGCATGATACTTGTC 59.195 37.037 0.00 0.00 40.66 3.18
2713 4052 8.344831 GCATTATAGTTTGCATGATACTTGTCA 58.655 33.333 0.00 0.00 38.72 3.58
2718 4057 7.133891 AGTTTGCATGATACTTGTCAAGTAC 57.866 36.000 24.36 18.26 45.99 2.73
2735 4139 1.685517 GTACTCCCTCCGTCCCATAAC 59.314 57.143 0.00 0.00 0.00 1.89
2980 4483 5.178623 CACTTACGATTGTAGCACAAAAGGA 59.821 40.000 5.94 0.00 41.96 3.36
3002 4505 3.060479 TCCTGCTTGGTGGATATACCT 57.940 47.619 0.00 0.00 41.43 3.08
3064 4567 8.924511 TTCATCTTCTGTACTTTGGAATTCTT 57.075 30.769 5.23 0.00 0.00 2.52
3601 5104 9.754382 AAATACATGATTGCCTATTGAATTCAC 57.246 29.630 7.89 0.00 0.00 3.18
3790 5293 0.606096 TCCATCGAGGTTCTTCGCAA 59.394 50.000 0.00 0.00 40.29 4.85
3887 5390 1.997669 CGCCTGGTTCTAACTCACTC 58.002 55.000 0.00 0.00 0.00 3.51
3981 5486 0.038166 ACCCCAAGCGTGTTCATCAT 59.962 50.000 0.00 0.00 0.00 2.45
4330 5835 5.875359 GGTGTTTAGAATAGAACAGTGGAGG 59.125 44.000 0.00 0.00 36.52 4.30
4485 5990 0.766674 TGTAGCTGTGGGAAGTGGGT 60.767 55.000 0.00 0.00 0.00 4.51
4486 5991 1.272807 GTAGCTGTGGGAAGTGGGTA 58.727 55.000 0.00 0.00 0.00 3.69
4549 6054 1.678101 GGATGCACAACTATTGCCTCC 59.322 52.381 3.36 3.36 44.33 4.30
4556 6061 4.051922 CACAACTATTGCCTCCGATCTAC 58.948 47.826 0.00 0.00 0.00 2.59
4557 6062 3.961408 ACAACTATTGCCTCCGATCTACT 59.039 43.478 0.00 0.00 0.00 2.57
4558 6063 4.038162 ACAACTATTGCCTCCGATCTACTC 59.962 45.833 0.00 0.00 0.00 2.59
4559 6064 3.158676 ACTATTGCCTCCGATCTACTCC 58.841 50.000 0.00 0.00 0.00 3.85
4560 6065 1.343069 ATTGCCTCCGATCTACTCCC 58.657 55.000 0.00 0.00 0.00 4.30
4561 6066 0.261991 TTGCCTCCGATCTACTCCCT 59.738 55.000 0.00 0.00 0.00 4.20
4562 6067 0.178987 TGCCTCCGATCTACTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
4563 6068 0.111639 GCCTCCGATCTACTCCCTCT 59.888 60.000 0.00 0.00 0.00 3.69
4564 6069 1.904287 CCTCCGATCTACTCCCTCTG 58.096 60.000 0.00 0.00 0.00 3.35
4565 6070 1.144093 CCTCCGATCTACTCCCTCTGT 59.856 57.143 0.00 0.00 0.00 3.41
4566 6071 2.423660 CCTCCGATCTACTCCCTCTGTT 60.424 54.545 0.00 0.00 0.00 3.16
4567 6072 3.292460 CTCCGATCTACTCCCTCTGTTT 58.708 50.000 0.00 0.00 0.00 2.83
4568 6073 3.288964 TCCGATCTACTCCCTCTGTTTC 58.711 50.000 0.00 0.00 0.00 2.78
4569 6074 2.362717 CCGATCTACTCCCTCTGTTTCC 59.637 54.545 0.00 0.00 0.00 3.13
4570 6075 3.024547 CGATCTACTCCCTCTGTTTCCA 58.975 50.000 0.00 0.00 0.00 3.53
4571 6076 3.447586 CGATCTACTCCCTCTGTTTCCAA 59.552 47.826 0.00 0.00 0.00 3.53
4572 6077 4.081642 CGATCTACTCCCTCTGTTTCCAAA 60.082 45.833 0.00 0.00 0.00 3.28
4573 6078 5.395768 CGATCTACTCCCTCTGTTTCCAAAT 60.396 44.000 0.00 0.00 0.00 2.32
4574 6079 6.183360 CGATCTACTCCCTCTGTTTCCAAATA 60.183 42.308 0.00 0.00 0.00 1.40
4575 6080 7.472100 CGATCTACTCCCTCTGTTTCCAAATAT 60.472 40.741 0.00 0.00 0.00 1.28
4576 6081 7.510675 TCTACTCCCTCTGTTTCCAAATATT 57.489 36.000 0.00 0.00 0.00 1.28
4577 6082 7.928873 TCTACTCCCTCTGTTTCCAAATATTT 58.071 34.615 0.00 0.00 0.00 1.40
4578 6083 6.840780 ACTCCCTCTGTTTCCAAATATTTG 57.159 37.500 19.40 19.40 37.90 2.32
4579 6084 6.314917 ACTCCCTCTGTTTCCAAATATTTGT 58.685 36.000 23.24 0.77 36.45 2.83
4580 6085 6.434340 ACTCCCTCTGTTTCCAAATATTTGTC 59.566 38.462 23.24 12.77 36.45 3.18
4581 6086 6.552008 TCCCTCTGTTTCCAAATATTTGTCT 58.448 36.000 23.24 0.00 36.45 3.41
4582 6087 7.010160 TCCCTCTGTTTCCAAATATTTGTCTT 58.990 34.615 23.24 0.00 36.45 3.01
4583 6088 7.176690 TCCCTCTGTTTCCAAATATTTGTCTTC 59.823 37.037 23.24 13.05 36.45 2.87
4584 6089 7.315890 CCTCTGTTTCCAAATATTTGTCTTCC 58.684 38.462 23.24 10.10 36.45 3.46
4585 6090 7.177392 CCTCTGTTTCCAAATATTTGTCTTCCT 59.823 37.037 23.24 0.00 36.45 3.36
4586 6091 9.231297 CTCTGTTTCCAAATATTTGTCTTCCTA 57.769 33.333 23.24 6.60 36.45 2.94
4587 6092 9.231297 TCTGTTTCCAAATATTTGTCTTCCTAG 57.769 33.333 23.24 13.55 36.45 3.02
4588 6093 9.231297 CTGTTTCCAAATATTTGTCTTCCTAGA 57.769 33.333 23.24 10.41 36.45 2.43
4603 6108 7.020827 TCTTCCTAGACATTTCAAATGGACT 57.979 36.000 14.70 14.18 0.00 3.85
4604 6109 8.146053 TCTTCCTAGACATTTCAAATGGACTA 57.854 34.615 14.70 14.50 0.00 2.59
4605 6110 8.041323 TCTTCCTAGACATTTCAAATGGACTAC 58.959 37.037 14.70 1.26 0.00 2.73
4606 6111 7.496346 TCCTAGACATTTCAAATGGACTACT 57.504 36.000 14.70 7.81 0.00 2.57
4607 6112 8.603898 TCCTAGACATTTCAAATGGACTACTA 57.396 34.615 14.70 8.42 0.00 1.82
4608 6113 8.475639 TCCTAGACATTTCAAATGGACTACTAC 58.524 37.037 14.70 0.00 0.00 2.73
4609 6114 8.258007 CCTAGACATTTCAAATGGACTACTACA 58.742 37.037 14.70 0.00 0.00 2.74
4610 6115 9.823647 CTAGACATTTCAAATGGACTACTACAT 57.176 33.333 14.70 0.00 0.00 2.29
4614 6119 9.342308 ACATTTCAAATGGACTACTACATATGG 57.658 33.333 14.70 0.00 0.00 2.74
4615 6120 9.559732 CATTTCAAATGGACTACTACATATGGA 57.440 33.333 7.80 0.00 0.00 3.41
4617 6122 9.559732 TTTCAAATGGACTACTACATATGGATG 57.440 33.333 7.80 0.00 39.16 3.51
4619 6124 9.374711 TCAAATGGACTACTACATATGGATGTA 57.625 33.333 7.80 6.18 44.77 2.29
4622 6127 8.901472 ATGGACTACTACATATGGATGTATGT 57.099 34.615 7.80 5.09 45.42 2.29
4623 6128 9.990868 ATGGACTACTACATATGGATGTATGTA 57.009 33.333 7.80 6.59 45.42 2.29
4660 6165 8.976986 AAGTGTAGATTGAATCATTTTGCTTC 57.023 30.769 8.03 0.00 0.00 3.86
4661 6166 7.246311 AGTGTAGATTGAATCATTTTGCTTCG 58.754 34.615 8.03 0.00 0.00 3.79
4662 6167 7.023575 GTGTAGATTGAATCATTTTGCTTCGT 58.976 34.615 8.03 0.00 0.00 3.85
4663 6168 8.175069 GTGTAGATTGAATCATTTTGCTTCGTA 58.825 33.333 8.03 0.00 0.00 3.43
4664 6169 8.892723 TGTAGATTGAATCATTTTGCTTCGTAT 58.107 29.630 8.03 0.00 0.00 3.06
4665 6170 9.162793 GTAGATTGAATCATTTTGCTTCGTATG 57.837 33.333 8.03 0.00 0.00 2.39
4666 6171 7.765307 AGATTGAATCATTTTGCTTCGTATGT 58.235 30.769 8.03 0.00 0.00 2.29
4667 6172 8.892723 AGATTGAATCATTTTGCTTCGTATGTA 58.107 29.630 8.03 0.00 0.00 2.29
4668 6173 9.162793 GATTGAATCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
4669 6174 7.609760 TGAATCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
4670 6175 7.684670 TGAATCATTTTGCTTCGTATGTAGTC 58.315 34.615 0.00 0.00 0.00 2.59
4671 6176 7.333174 TGAATCATTTTGCTTCGTATGTAGTCA 59.667 33.333 0.00 0.00 0.00 3.41
4672 6177 6.403333 TCATTTTGCTTCGTATGTAGTCAC 57.597 37.500 0.00 0.00 0.00 3.67
4673 6178 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
4674 6179 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
4675 6180 7.815549 TCATTTTGCTTCGTATGTAGTCACTTA 59.184 33.333 0.00 0.00 0.00 2.24
4676 6181 8.604035 CATTTTGCTTCGTATGTAGTCACTTAT 58.396 33.333 0.00 0.00 0.00 1.73
4677 6182 8.542497 TTTTGCTTCGTATGTAGTCACTTATT 57.458 30.769 0.00 0.00 0.00 1.40
4678 6183 7.751047 TTGCTTCGTATGTAGTCACTTATTC 57.249 36.000 0.00 0.00 0.00 1.75
4679 6184 6.859017 TGCTTCGTATGTAGTCACTTATTCA 58.141 36.000 0.00 0.00 0.00 2.57
4680 6185 7.317390 TGCTTCGTATGTAGTCACTTATTCAA 58.683 34.615 0.00 0.00 0.00 2.69
4681 6186 7.815549 TGCTTCGTATGTAGTCACTTATTCAAA 59.184 33.333 0.00 0.00 0.00 2.69
4682 6187 8.818057 GCTTCGTATGTAGTCACTTATTCAAAT 58.182 33.333 0.00 0.00 0.00 2.32
4685 6190 9.731819 TCGTATGTAGTCACTTATTCAAATCTC 57.268 33.333 0.00 0.00 0.00 2.75
4686 6191 9.737427 CGTATGTAGTCACTTATTCAAATCTCT 57.263 33.333 0.00 0.00 0.00 3.10
4711 6216 9.846248 CTAGAAAGACAAATATTTGGAAACAGG 57.154 33.333 27.43 10.77 44.54 4.00
4712 6217 7.670364 AGAAAGACAAATATTTGGAAACAGGG 58.330 34.615 27.43 4.34 44.54 4.45
4713 6218 7.508977 AGAAAGACAAATATTTGGAAACAGGGA 59.491 33.333 27.43 0.00 44.54 4.20
4714 6219 6.840780 AGACAAATATTTGGAAACAGGGAG 57.159 37.500 27.43 3.22 44.54 4.30
4715 6220 5.185828 AGACAAATATTTGGAAACAGGGAGC 59.814 40.000 27.43 6.32 44.54 4.70
4716 6221 4.837860 ACAAATATTTGGAAACAGGGAGCA 59.162 37.500 27.43 0.00 44.54 4.26
4812 6318 1.028905 TTTCCCGTTGCAAGTTCAGG 58.971 50.000 0.00 0.00 0.00 3.86
4817 6323 2.031157 CCCGTTGCAAGTTCAGGTTTAG 60.031 50.000 0.00 0.00 0.00 1.85
4879 6385 0.462937 TCCAACCACTTGTGTCCACG 60.463 55.000 0.00 0.00 0.00 4.94
4938 6444 1.335145 GGGATGATGATTTGCCCCAG 58.665 55.000 0.00 0.00 34.10 4.45
4953 6459 3.871775 CCAGTGTTGTGTCAATGGC 57.128 52.632 0.52 0.00 44.41 4.40
4958 6464 3.565482 CAGTGTTGTGTCAATGGCTAGTT 59.435 43.478 0.00 0.00 31.10 2.24
4959 6465 3.565482 AGTGTTGTGTCAATGGCTAGTTG 59.435 43.478 0.00 0.00 0.00 3.16
4960 6466 2.293122 TGTTGTGTCAATGGCTAGTTGC 59.707 45.455 0.00 0.00 41.94 4.17
4969 6475 3.732849 GCTAGTTGCCCTGGCCCT 61.733 66.667 5.57 4.29 41.55 5.19
4970 6476 2.375345 GCTAGTTGCCCTGGCCCTA 61.375 63.158 5.57 5.24 41.55 3.53
4971 6477 1.527370 CTAGTTGCCCTGGCCCTAC 59.473 63.158 5.57 1.62 41.09 3.18
4972 6478 1.984288 CTAGTTGCCCTGGCCCTACC 61.984 65.000 5.57 0.00 41.09 3.18
4973 6479 2.486410 TAGTTGCCCTGGCCCTACCT 62.486 60.000 5.57 0.00 41.09 3.08
4974 6480 3.338250 TTGCCCTGGCCCTACCTG 61.338 66.667 5.57 0.00 41.09 4.00
4975 6481 4.675303 TGCCCTGGCCCTACCTGT 62.675 66.667 5.57 0.00 41.09 4.00
4976 6482 3.798511 GCCCTGGCCCTACCTGTC 61.799 72.222 0.00 0.00 40.22 3.51
5252 6758 7.511959 AGAAGTAAACTGGGACAAAAGATTC 57.488 36.000 0.00 0.00 38.70 2.52
5253 6759 7.060421 AGAAGTAAACTGGGACAAAAGATTCA 58.940 34.615 0.00 0.00 38.70 2.57
5254 6760 7.559897 AGAAGTAAACTGGGACAAAAGATTCAA 59.440 33.333 0.00 0.00 38.70 2.69
5255 6761 7.839680 AGTAAACTGGGACAAAAGATTCAAT 57.160 32.000 0.00 0.00 38.70 2.57
5256 6762 8.250143 AGTAAACTGGGACAAAAGATTCAATT 57.750 30.769 0.00 0.00 38.70 2.32
5257 6763 8.704668 AGTAAACTGGGACAAAAGATTCAATTT 58.295 29.630 0.00 0.00 38.70 1.82
5258 6764 8.978539 GTAAACTGGGACAAAAGATTCAATTTC 58.021 33.333 0.00 0.00 38.70 2.17
5259 6765 6.983906 ACTGGGACAAAAGATTCAATTTCT 57.016 33.333 0.00 0.00 38.70 2.52
5260 6766 7.365497 ACTGGGACAAAAGATTCAATTTCTT 57.635 32.000 0.00 0.00 38.70 2.52
5261 6767 7.436933 ACTGGGACAAAAGATTCAATTTCTTC 58.563 34.615 0.00 0.00 38.70 2.87
5262 6768 7.069826 ACTGGGACAAAAGATTCAATTTCTTCA 59.930 33.333 0.00 0.00 38.70 3.02
5263 6769 7.965718 TGGGACAAAAGATTCAATTTCTTCAT 58.034 30.769 0.00 0.00 32.33 2.57
5264 6770 8.090214 TGGGACAAAAGATTCAATTTCTTCATC 58.910 33.333 0.00 0.00 32.33 2.92
5265 6771 7.547019 GGGACAAAAGATTCAATTTCTTCATCC 59.453 37.037 6.82 6.82 32.33 3.51
5266 6772 7.547019 GGACAAAAGATTCAATTTCTTCATCCC 59.453 37.037 0.00 0.00 32.33 3.85
5267 6773 8.198807 ACAAAAGATTCAATTTCTTCATCCCT 57.801 30.769 0.00 0.00 32.33 4.20
5268 6774 8.092687 ACAAAAGATTCAATTTCTTCATCCCTG 58.907 33.333 0.00 0.00 32.33 4.45
5269 6775 8.308931 CAAAAGATTCAATTTCTTCATCCCTGA 58.691 33.333 0.00 0.00 32.33 3.86
5270 6776 7.401955 AAGATTCAATTTCTTCATCCCTGAC 57.598 36.000 0.00 0.00 0.00 3.51
5271 6777 5.890419 AGATTCAATTTCTTCATCCCTGACC 59.110 40.000 0.00 0.00 0.00 4.02
5272 6778 4.934797 TCAATTTCTTCATCCCTGACCT 57.065 40.909 0.00 0.00 0.00 3.85
5273 6779 4.592942 TCAATTTCTTCATCCCTGACCTG 58.407 43.478 0.00 0.00 0.00 4.00
5274 6780 3.659183 ATTTCTTCATCCCTGACCTGG 57.341 47.619 0.00 0.00 0.00 4.45
5275 6781 2.342406 TTCTTCATCCCTGACCTGGA 57.658 50.000 0.00 0.00 36.05 3.86
5276 6782 1.573108 TCTTCATCCCTGACCTGGAC 58.427 55.000 0.00 0.00 33.94 4.02
5277 6783 1.203300 TCTTCATCCCTGACCTGGACA 60.203 52.381 0.00 0.00 33.94 4.02
5278 6784 1.630369 CTTCATCCCTGACCTGGACAA 59.370 52.381 0.00 0.00 33.94 3.18
5279 6785 1.279496 TCATCCCTGACCTGGACAAG 58.721 55.000 0.00 0.00 33.94 3.16
5280 6786 1.203300 TCATCCCTGACCTGGACAAGA 60.203 52.381 0.00 0.59 33.94 3.02
5281 6787 1.065854 CATCCCTGACCTGGACAAGAC 60.066 57.143 0.00 0.00 33.94 3.01
5282 6788 0.836400 TCCCTGACCTGGACAAGACC 60.836 60.000 0.00 0.00 0.00 3.85
5283 6789 1.127567 CCCTGACCTGGACAAGACCA 61.128 60.000 0.00 0.00 38.33 4.02
5284 6790 0.987294 CCTGACCTGGACAAGACCAT 59.013 55.000 0.00 0.00 39.34 3.55
5285 6791 1.352352 CCTGACCTGGACAAGACCATT 59.648 52.381 0.00 0.00 39.34 3.16
5286 6792 2.616510 CCTGACCTGGACAAGACCATTC 60.617 54.545 0.00 0.00 39.34 2.67
5287 6793 1.001974 TGACCTGGACAAGACCATTCG 59.998 52.381 0.00 0.00 39.34 3.34
5288 6794 1.275291 GACCTGGACAAGACCATTCGA 59.725 52.381 0.00 0.00 39.34 3.71
5289 6795 1.002087 ACCTGGACAAGACCATTCGAC 59.998 52.381 0.00 0.00 39.34 4.20
5290 6796 1.676014 CCTGGACAAGACCATTCGACC 60.676 57.143 0.00 0.00 39.34 4.79
5291 6797 1.001974 CTGGACAAGACCATTCGACCA 59.998 52.381 0.00 0.00 39.34 4.02
5292 6798 1.418264 TGGACAAGACCATTCGACCAA 59.582 47.619 0.00 0.00 34.77 3.67
5293 6799 2.158740 TGGACAAGACCATTCGACCAAA 60.159 45.455 0.00 0.00 34.77 3.28
5294 6800 3.081804 GGACAAGACCATTCGACCAAAT 58.918 45.455 0.00 0.00 0.00 2.32
5295 6801 3.506067 GGACAAGACCATTCGACCAAATT 59.494 43.478 0.00 0.00 0.00 1.82
5296 6802 4.379499 GGACAAGACCATTCGACCAAATTC 60.379 45.833 0.00 0.00 0.00 2.17
5297 6803 4.141287 ACAAGACCATTCGACCAAATTCA 58.859 39.130 0.00 0.00 0.00 2.57
5298 6804 4.766891 ACAAGACCATTCGACCAAATTCAT 59.233 37.500 0.00 0.00 0.00 2.57
5299 6805 4.970662 AGACCATTCGACCAAATTCATG 57.029 40.909 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.949352 TTCTCCTTCATTCATCATTTAGGC 57.051 37.500 0.00 0.00 0.00 3.93
1 2 8.743085 TCTTTCTCCTTCATTCATCATTTAGG 57.257 34.615 0.00 0.00 0.00 2.69
5 6 7.065563 CGAGTTCTTTCTCCTTCATTCATCATT 59.934 37.037 0.00 0.00 0.00 2.57
6 7 6.538021 CGAGTTCTTTCTCCTTCATTCATCAT 59.462 38.462 0.00 0.00 0.00 2.45
9 10 5.799213 ACGAGTTCTTTCTCCTTCATTCAT 58.201 37.500 0.00 0.00 0.00 2.57
10 11 5.215252 ACGAGTTCTTTCTCCTTCATTCA 57.785 39.130 0.00 0.00 0.00 2.57
11 12 7.091443 TCTTACGAGTTCTTTCTCCTTCATTC 58.909 38.462 0.00 0.00 0.00 2.67
12 13 6.994221 TCTTACGAGTTCTTTCTCCTTCATT 58.006 36.000 0.00 0.00 0.00 2.57
13 14 6.591750 TCTTACGAGTTCTTTCTCCTTCAT 57.408 37.500 0.00 0.00 0.00 2.57
14 15 6.401047 TTCTTACGAGTTCTTTCTCCTTCA 57.599 37.500 0.00 0.00 0.00 3.02
15 16 7.710766 TTTTCTTACGAGTTCTTTCTCCTTC 57.289 36.000 0.00 0.00 0.00 3.46
16 17 7.254829 GCTTTTTCTTACGAGTTCTTTCTCCTT 60.255 37.037 0.00 0.00 0.00 3.36
17 18 6.203145 GCTTTTTCTTACGAGTTCTTTCTCCT 59.797 38.462 0.00 0.00 0.00 3.69
18 19 6.203145 AGCTTTTTCTTACGAGTTCTTTCTCC 59.797 38.462 0.00 0.00 0.00 3.71
19 20 7.179927 AGCTTTTTCTTACGAGTTCTTTCTC 57.820 36.000 0.00 0.00 0.00 2.87
20 21 7.410485 CAAGCTTTTTCTTACGAGTTCTTTCT 58.590 34.615 0.00 0.00 0.00 2.52
21 22 6.140895 GCAAGCTTTTTCTTACGAGTTCTTTC 59.859 38.462 0.00 0.00 0.00 2.62
22 23 5.971792 GCAAGCTTTTTCTTACGAGTTCTTT 59.028 36.000 0.00 0.00 0.00 2.52
23 24 5.297029 AGCAAGCTTTTTCTTACGAGTTCTT 59.703 36.000 0.00 0.00 0.00 2.52
24 25 4.816925 AGCAAGCTTTTTCTTACGAGTTCT 59.183 37.500 0.00 0.00 0.00 3.01
25 26 5.096954 AGCAAGCTTTTTCTTACGAGTTC 57.903 39.130 0.00 0.00 0.00 3.01
26 27 5.500645 AAGCAAGCTTTTTCTTACGAGTT 57.499 34.783 0.00 0.00 31.29 3.01
27 28 4.023963 GGAAGCAAGCTTTTTCTTACGAGT 60.024 41.667 8.91 0.00 36.26 4.18
28 29 4.467735 GGAAGCAAGCTTTTTCTTACGAG 58.532 43.478 8.91 0.00 36.26 4.18
29 30 3.252458 GGGAAGCAAGCTTTTTCTTACGA 59.748 43.478 8.91 0.00 36.26 3.43
30 31 3.253432 AGGGAAGCAAGCTTTTTCTTACG 59.747 43.478 8.91 0.00 36.26 3.18
31 32 4.855715 AGGGAAGCAAGCTTTTTCTTAC 57.144 40.909 8.91 11.52 36.26 2.34
32 33 7.539034 AATAAGGGAAGCAAGCTTTTTCTTA 57.461 32.000 8.91 15.12 36.26 2.10
33 34 6.425210 AATAAGGGAAGCAAGCTTTTTCTT 57.575 33.333 8.91 13.72 36.26 2.52
34 35 6.425210 AAATAAGGGAAGCAAGCTTTTTCT 57.575 33.333 8.91 4.54 36.26 2.52
35 36 8.601845 TTTAAATAAGGGAAGCAAGCTTTTTC 57.398 30.769 8.91 3.99 36.26 2.29
36 37 8.972458 TTTTAAATAAGGGAAGCAAGCTTTTT 57.028 26.923 8.91 6.90 36.26 1.94
37 38 8.972458 TTTTTAAATAAGGGAAGCAAGCTTTT 57.028 26.923 8.91 2.36 36.26 2.27
126 127 9.355916 GGGTCATCTTTTAGCCTTATCTTTAAT 57.644 33.333 0.00 0.00 0.00 1.40
127 128 8.333235 TGGGTCATCTTTTAGCCTTATCTTTAA 58.667 33.333 0.00 0.00 34.30 1.52
128 129 7.867921 TGGGTCATCTTTTAGCCTTATCTTTA 58.132 34.615 0.00 0.00 34.30 1.85
129 130 6.731467 TGGGTCATCTTTTAGCCTTATCTTT 58.269 36.000 0.00 0.00 34.30 2.52
130 131 6.327386 TGGGTCATCTTTTAGCCTTATCTT 57.673 37.500 0.00 0.00 34.30 2.40
131 132 5.975988 TGGGTCATCTTTTAGCCTTATCT 57.024 39.130 0.00 0.00 34.30 1.98
132 133 5.707764 GGATGGGTCATCTTTTAGCCTTATC 59.292 44.000 7.68 0.00 40.39 1.75
133 134 5.134339 TGGATGGGTCATCTTTTAGCCTTAT 59.866 40.000 7.68 0.00 40.39 1.73
134 135 4.476846 TGGATGGGTCATCTTTTAGCCTTA 59.523 41.667 7.68 0.00 40.39 2.69
135 136 3.269381 TGGATGGGTCATCTTTTAGCCTT 59.731 43.478 7.68 0.00 40.39 4.35
136 137 2.852449 TGGATGGGTCATCTTTTAGCCT 59.148 45.455 7.68 0.00 40.39 4.58
137 138 3.297134 TGGATGGGTCATCTTTTAGCC 57.703 47.619 7.68 0.00 40.39 3.93
138 139 4.646492 ACAATGGATGGGTCATCTTTTAGC 59.354 41.667 7.68 0.00 40.39 3.09
139 140 7.227512 GTCTACAATGGATGGGTCATCTTTTAG 59.772 40.741 7.68 3.51 40.39 1.85
140 141 7.054124 GTCTACAATGGATGGGTCATCTTTTA 58.946 38.462 7.68 0.00 40.39 1.52
141 142 5.888161 GTCTACAATGGATGGGTCATCTTTT 59.112 40.000 7.68 0.63 40.39 2.27
142 143 5.192522 AGTCTACAATGGATGGGTCATCTTT 59.807 40.000 7.68 0.92 40.39 2.52
143 144 4.723789 AGTCTACAATGGATGGGTCATCTT 59.276 41.667 7.68 0.00 40.39 2.40
144 145 4.302067 AGTCTACAATGGATGGGTCATCT 58.698 43.478 7.68 0.00 40.39 2.90
145 146 4.346418 AGAGTCTACAATGGATGGGTCATC 59.654 45.833 0.00 0.00 39.87 2.92
146 147 4.302067 AGAGTCTACAATGGATGGGTCAT 58.698 43.478 0.00 0.00 0.00 3.06
147 148 3.724478 AGAGTCTACAATGGATGGGTCA 58.276 45.455 0.00 0.00 0.00 4.02
148 149 4.762289 AAGAGTCTACAATGGATGGGTC 57.238 45.455 0.00 0.00 0.00 4.46
149 150 5.520748 AAAAGAGTCTACAATGGATGGGT 57.479 39.130 0.00 0.00 0.00 4.51
204 205 9.817809 TGTACAATGGTTTATCTTAGTCTCATC 57.182 33.333 0.00 0.00 0.00 2.92
208 209 8.893727 GCAATGTACAATGGTTTATCTTAGTCT 58.106 33.333 12.73 0.00 0.00 3.24
209 210 8.129211 GGCAATGTACAATGGTTTATCTTAGTC 58.871 37.037 12.73 0.00 0.00 2.59
210 211 7.068226 GGGCAATGTACAATGGTTTATCTTAGT 59.932 37.037 12.73 0.00 0.00 2.24
211 212 7.285401 AGGGCAATGTACAATGGTTTATCTTAG 59.715 37.037 12.73 0.00 0.00 2.18
212 213 7.122715 AGGGCAATGTACAATGGTTTATCTTA 58.877 34.615 12.73 0.00 0.00 2.10
213 214 5.957774 AGGGCAATGTACAATGGTTTATCTT 59.042 36.000 12.73 0.00 0.00 2.40
214 215 5.518865 AGGGCAATGTACAATGGTTTATCT 58.481 37.500 12.73 0.00 0.00 1.98
215 216 5.852282 AGGGCAATGTACAATGGTTTATC 57.148 39.130 12.73 0.00 0.00 1.75
216 217 5.596772 GGTAGGGCAATGTACAATGGTTTAT 59.403 40.000 12.73 0.00 0.00 1.40
217 218 4.951094 GGTAGGGCAATGTACAATGGTTTA 59.049 41.667 12.73 0.00 0.00 2.01
218 219 3.767131 GGTAGGGCAATGTACAATGGTTT 59.233 43.478 12.73 0.00 0.00 3.27
219 220 3.245443 TGGTAGGGCAATGTACAATGGTT 60.245 43.478 12.73 0.00 0.00 3.67
220 221 2.310349 TGGTAGGGCAATGTACAATGGT 59.690 45.455 12.73 0.00 0.00 3.55
221 222 2.687935 GTGGTAGGGCAATGTACAATGG 59.312 50.000 12.73 0.55 0.00 3.16
222 223 3.620488 AGTGGTAGGGCAATGTACAATG 58.380 45.455 6.55 6.55 0.00 2.82
223 224 4.016444 CAAGTGGTAGGGCAATGTACAAT 58.984 43.478 0.00 0.00 0.00 2.71
224 225 3.073209 TCAAGTGGTAGGGCAATGTACAA 59.927 43.478 0.00 0.00 0.00 2.41
225 226 2.640332 TCAAGTGGTAGGGCAATGTACA 59.360 45.455 0.00 0.00 0.00 2.90
226 227 3.343941 TCAAGTGGTAGGGCAATGTAC 57.656 47.619 0.00 0.00 0.00 2.90
227 228 4.018870 TGATTCAAGTGGTAGGGCAATGTA 60.019 41.667 0.00 0.00 0.00 2.29
228 229 2.969821 TTCAAGTGGTAGGGCAATGT 57.030 45.000 0.00 0.00 0.00 2.71
229 230 3.355378 TGATTCAAGTGGTAGGGCAATG 58.645 45.455 0.00 0.00 0.00 2.82
230 231 3.737559 TGATTCAAGTGGTAGGGCAAT 57.262 42.857 0.00 0.00 0.00 3.56
231 232 3.153919 GTTGATTCAAGTGGTAGGGCAA 58.846 45.455 0.00 0.00 0.00 4.52
232 233 2.375174 AGTTGATTCAAGTGGTAGGGCA 59.625 45.455 5.94 0.00 0.00 5.36
233 234 3.073274 AGTTGATTCAAGTGGTAGGGC 57.927 47.619 5.94 0.00 0.00 5.19
234 235 4.181578 CGTAGTTGATTCAAGTGGTAGGG 58.818 47.826 15.52 0.00 0.00 3.53
235 236 4.081862 TCCGTAGTTGATTCAAGTGGTAGG 60.082 45.833 15.52 12.48 0.00 3.18
236 237 5.068234 TCCGTAGTTGATTCAAGTGGTAG 57.932 43.478 15.52 5.43 0.00 3.18
237 238 5.471556 TTCCGTAGTTGATTCAAGTGGTA 57.528 39.130 15.52 2.31 0.00 3.25
238 239 4.345859 TTCCGTAGTTGATTCAAGTGGT 57.654 40.909 15.52 0.00 0.00 4.16
239 240 5.181245 ACATTTCCGTAGTTGATTCAAGTGG 59.819 40.000 15.52 9.85 0.00 4.00
240 241 6.241207 ACATTTCCGTAGTTGATTCAAGTG 57.759 37.500 15.52 1.60 0.00 3.16
241 242 6.877611 AACATTTCCGTAGTTGATTCAAGT 57.122 33.333 11.33 11.33 0.00 3.16
242 243 7.647715 ACAAAACATTTCCGTAGTTGATTCAAG 59.352 33.333 0.00 0.00 0.00 3.02
243 244 7.484975 ACAAAACATTTCCGTAGTTGATTCAA 58.515 30.769 0.00 0.00 0.00 2.69
244 245 7.033530 ACAAAACATTTCCGTAGTTGATTCA 57.966 32.000 0.00 0.00 0.00 2.57
245 246 7.136119 TGACAAAACATTTCCGTAGTTGATTC 58.864 34.615 0.00 0.00 0.00 2.52
246 247 7.033530 TGACAAAACATTTCCGTAGTTGATT 57.966 32.000 0.00 0.00 0.00 2.57
247 248 6.262273 ACTGACAAAACATTTCCGTAGTTGAT 59.738 34.615 0.00 0.00 0.00 2.57
248 249 5.587043 ACTGACAAAACATTTCCGTAGTTGA 59.413 36.000 0.00 0.00 0.00 3.18
249 250 5.816919 ACTGACAAAACATTTCCGTAGTTG 58.183 37.500 0.00 0.00 0.00 3.16
250 251 6.445357 AACTGACAAAACATTTCCGTAGTT 57.555 33.333 0.00 0.00 0.00 2.24
251 252 6.127842 ACAAACTGACAAAACATTTCCGTAGT 60.128 34.615 0.00 0.00 0.00 2.73
252 253 6.262601 ACAAACTGACAAAACATTTCCGTAG 58.737 36.000 0.00 0.00 0.00 3.51
253 254 6.197364 ACAAACTGACAAAACATTTCCGTA 57.803 33.333 0.00 0.00 0.00 4.02
254 255 5.066968 ACAAACTGACAAAACATTTCCGT 57.933 34.783 0.00 0.00 0.00 4.69
255 256 6.695278 ACATACAAACTGACAAAACATTTCCG 59.305 34.615 0.00 0.00 0.00 4.30
256 257 8.419076 AACATACAAACTGACAAAACATTTCC 57.581 30.769 0.00 0.00 0.00 3.13
259 260 9.730420 GAGTAACATACAAACTGACAAAACATT 57.270 29.630 0.00 0.00 0.00 2.71
260 261 8.349983 GGAGTAACATACAAACTGACAAAACAT 58.650 33.333 0.00 0.00 0.00 2.71
261 262 7.201750 GGGAGTAACATACAAACTGACAAAACA 60.202 37.037 0.00 0.00 0.00 2.83
262 263 7.012989 AGGGAGTAACATACAAACTGACAAAAC 59.987 37.037 0.00 0.00 0.00 2.43
263 264 7.057894 AGGGAGTAACATACAAACTGACAAAA 58.942 34.615 0.00 0.00 0.00 2.44
264 265 6.597562 AGGGAGTAACATACAAACTGACAAA 58.402 36.000 0.00 0.00 0.00 2.83
265 266 6.182507 AGGGAGTAACATACAAACTGACAA 57.817 37.500 0.00 0.00 0.00 3.18
266 267 5.279809 GGAGGGAGTAACATACAAACTGACA 60.280 44.000 0.00 0.00 0.00 3.58
267 268 5.176592 GGAGGGAGTAACATACAAACTGAC 58.823 45.833 0.00 0.00 0.00 3.51
268 269 4.081862 CGGAGGGAGTAACATACAAACTGA 60.082 45.833 0.00 0.00 0.00 3.41
269 270 4.181578 CGGAGGGAGTAACATACAAACTG 58.818 47.826 0.00 0.00 0.00 3.16
270 271 3.836562 ACGGAGGGAGTAACATACAAACT 59.163 43.478 0.00 0.00 0.00 2.66
271 272 4.198028 ACGGAGGGAGTAACATACAAAC 57.802 45.455 0.00 0.00 0.00 2.93
272 273 4.895668 AACGGAGGGAGTAACATACAAA 57.104 40.909 0.00 0.00 0.00 2.83
273 274 4.283978 TGAAACGGAGGGAGTAACATACAA 59.716 41.667 0.00 0.00 0.00 2.41
274 275 3.833650 TGAAACGGAGGGAGTAACATACA 59.166 43.478 0.00 0.00 0.00 2.29
275 276 4.460948 TGAAACGGAGGGAGTAACATAC 57.539 45.455 0.00 0.00 0.00 2.39
276 277 5.486735 TTTGAAACGGAGGGAGTAACATA 57.513 39.130 0.00 0.00 0.00 2.29
277 278 4.360951 TTTGAAACGGAGGGAGTAACAT 57.639 40.909 0.00 0.00 0.00 2.71
278 279 3.842007 TTTGAAACGGAGGGAGTAACA 57.158 42.857 0.00 0.00 0.00 2.41
279 280 6.168389 TCTATTTTGAAACGGAGGGAGTAAC 58.832 40.000 0.00 0.00 0.00 2.50
280 281 6.363167 TCTATTTTGAAACGGAGGGAGTAA 57.637 37.500 0.00 0.00 0.00 2.24
281 282 6.555463 ATCTATTTTGAAACGGAGGGAGTA 57.445 37.500 0.00 0.00 0.00 2.59
282 283 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
283 284 6.260271 GGTAATCTATTTTGAAACGGAGGGAG 59.740 42.308 0.00 0.00 0.00 4.30
284 285 6.117488 GGTAATCTATTTTGAAACGGAGGGA 58.883 40.000 0.00 0.00 0.00 4.20
285 286 5.298527 GGGTAATCTATTTTGAAACGGAGGG 59.701 44.000 0.00 0.00 0.00 4.30
286 287 5.883673 TGGGTAATCTATTTTGAAACGGAGG 59.116 40.000 0.00 0.00 0.00 4.30
287 288 6.995511 TGGGTAATCTATTTTGAAACGGAG 57.004 37.500 0.00 0.00 0.00 4.63
288 289 6.943718 AGTTGGGTAATCTATTTTGAAACGGA 59.056 34.615 0.00 0.00 0.00 4.69
289 290 7.153217 AGTTGGGTAATCTATTTTGAAACGG 57.847 36.000 0.00 0.00 0.00 4.44
317 318 9.478238 TGACCCAACTTTATACTATGTGTAGTA 57.522 33.333 0.00 0.00 45.02 1.82
318 319 8.370266 TGACCCAACTTTATACTATGTGTAGT 57.630 34.615 0.00 0.00 43.45 2.73
319 320 9.832445 AATGACCCAACTTTATACTATGTGTAG 57.168 33.333 0.00 0.00 34.24 2.74
331 332 9.250624 CGTTTCAAAATAAATGACCCAACTTTA 57.749 29.630 0.00 0.00 0.00 1.85
332 333 7.225734 CCGTTTCAAAATAAATGACCCAACTTT 59.774 33.333 0.00 0.00 0.00 2.66
333 334 6.704050 CCGTTTCAAAATAAATGACCCAACTT 59.296 34.615 0.00 0.00 0.00 2.66
334 335 6.041069 TCCGTTTCAAAATAAATGACCCAACT 59.959 34.615 0.00 0.00 0.00 3.16
335 336 6.217294 TCCGTTTCAAAATAAATGACCCAAC 58.783 36.000 0.00 0.00 0.00 3.77
336 337 6.406692 TCCGTTTCAAAATAAATGACCCAA 57.593 33.333 0.00 0.00 0.00 4.12
337 338 5.047660 CCTCCGTTTCAAAATAAATGACCCA 60.048 40.000 0.00 0.00 0.00 4.51
338 339 5.407502 CCTCCGTTTCAAAATAAATGACCC 58.592 41.667 0.00 0.00 0.00 4.46
339 340 5.184287 TCCCTCCGTTTCAAAATAAATGACC 59.816 40.000 0.00 0.00 0.00 4.02
340 341 6.072119 ACTCCCTCCGTTTCAAAATAAATGAC 60.072 38.462 0.00 0.00 0.00 3.06
341 342 6.007703 ACTCCCTCCGTTTCAAAATAAATGA 58.992 36.000 0.00 0.00 0.00 2.57
342 343 6.267496 ACTCCCTCCGTTTCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
343 344 7.173032 ACTACTCCCTCCGTTTCAAAATAAAT 58.827 34.615 0.00 0.00 0.00 1.40
344 345 6.536447 ACTACTCCCTCCGTTTCAAAATAAA 58.464 36.000 0.00 0.00 0.00 1.40
345 346 6.117975 ACTACTCCCTCCGTTTCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
346 347 5.750352 ACTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
347 348 4.635699 ACTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
348 349 5.750352 ATACTACTCCCTCCGTTTCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
349 350 5.750352 AATACTACTCCCTCCGTTTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
350 351 5.750352 AAATACTACTCCCTCCGTTTCAA 57.250 39.130 0.00 0.00 0.00 2.69
351 352 6.855763 TTAAATACTACTCCCTCCGTTTCA 57.144 37.500 0.00 0.00 0.00 2.69
352 353 7.099120 TGTTTAAATACTACTCCCTCCGTTTC 58.901 38.462 0.00 0.00 0.00 2.78
353 354 7.008021 TGTTTAAATACTACTCCCTCCGTTT 57.992 36.000 0.00 0.00 0.00 3.60
354 355 6.610075 TGTTTAAATACTACTCCCTCCGTT 57.390 37.500 0.00 0.00 0.00 4.44
355 356 6.014327 TGTTGTTTAAATACTACTCCCTCCGT 60.014 38.462 0.00 0.00 0.00 4.69
356 357 6.400568 TGTTGTTTAAATACTACTCCCTCCG 58.599 40.000 0.00 0.00 0.00 4.63
357 358 8.803397 AATGTTGTTTAAATACTACTCCCTCC 57.197 34.615 0.00 0.00 0.00 4.30
359 360 9.802039 TGAAATGTTGTTTAAATACTACTCCCT 57.198 29.630 0.00 0.00 0.00 4.20
368 369 9.967346 TGTCGGAAATGAAATGTTGTTTAAATA 57.033 25.926 0.00 0.00 0.00 1.40
369 370 8.760569 GTGTCGGAAATGAAATGTTGTTTAAAT 58.239 29.630 0.00 0.00 0.00 1.40
370 371 7.976734 AGTGTCGGAAATGAAATGTTGTTTAAA 59.023 29.630 0.00 0.00 0.00 1.52
371 372 7.484975 AGTGTCGGAAATGAAATGTTGTTTAA 58.515 30.769 0.00 0.00 0.00 1.52
372 373 7.033530 AGTGTCGGAAATGAAATGTTGTTTA 57.966 32.000 0.00 0.00 0.00 2.01
373 374 5.901552 AGTGTCGGAAATGAAATGTTGTTT 58.098 33.333 0.00 0.00 0.00 2.83
378 379 4.821805 ACTTGAGTGTCGGAAATGAAATGT 59.178 37.500 0.00 0.00 0.00 2.71
422 423 0.463295 ATCCACCTGCGCAATCTCTG 60.463 55.000 13.05 0.00 0.00 3.35
423 424 0.463295 CATCCACCTGCGCAATCTCT 60.463 55.000 13.05 0.00 0.00 3.10
424 425 2.020131 CATCCACCTGCGCAATCTC 58.980 57.895 13.05 0.00 0.00 2.75
425 426 2.117156 GCATCCACCTGCGCAATCT 61.117 57.895 13.05 0.00 31.49 2.40
426 427 2.410469 GCATCCACCTGCGCAATC 59.590 61.111 13.05 0.00 31.49 2.67
427 428 3.142838 GGCATCCACCTGCGCAAT 61.143 61.111 13.05 0.00 43.23 3.56
445 462 3.427503 CGTGTACAATGGATTTTGGAGCC 60.428 47.826 0.00 0.00 0.00 4.70
446 463 3.190535 ACGTGTACAATGGATTTTGGAGC 59.809 43.478 0.00 0.00 0.00 4.70
448 465 4.216687 GGAACGTGTACAATGGATTTTGGA 59.783 41.667 0.00 0.00 0.00 3.53
449 466 4.022762 TGGAACGTGTACAATGGATTTTGG 60.023 41.667 0.00 0.00 0.00 3.28
450 467 5.114785 TGGAACGTGTACAATGGATTTTG 57.885 39.130 0.00 0.00 0.00 2.44
452 469 7.122055 ACAATATGGAACGTGTACAATGGATTT 59.878 33.333 0.00 0.00 0.00 2.17
453 470 6.601613 ACAATATGGAACGTGTACAATGGATT 59.398 34.615 0.00 0.00 0.00 3.01
454 471 6.119536 ACAATATGGAACGTGTACAATGGAT 58.880 36.000 0.00 0.00 0.00 3.41
455 472 5.492895 ACAATATGGAACGTGTACAATGGA 58.507 37.500 0.00 0.00 0.00 3.41
456 473 5.501736 CGACAATATGGAACGTGTACAATGG 60.502 44.000 0.00 0.00 0.00 3.16
457 474 5.289917 TCGACAATATGGAACGTGTACAATG 59.710 40.000 0.00 0.00 0.00 2.82
458 475 5.412640 TCGACAATATGGAACGTGTACAAT 58.587 37.500 0.00 0.00 0.00 2.71
459 476 4.807443 TCGACAATATGGAACGTGTACAA 58.193 39.130 0.00 0.00 0.00 2.41
462 479 4.269123 GCATTCGACAATATGGAACGTGTA 59.731 41.667 0.00 0.00 0.00 2.90
465 482 2.612212 GGCATTCGACAATATGGAACGT 59.388 45.455 0.00 0.00 0.00 3.99
564 591 4.590850 TCATATGAATCACCTGTCCTCG 57.409 45.455 1.98 0.00 0.00 4.63
579 615 9.388506 AGTTCTCTCCTGTTTGTTTATCATATG 57.611 33.333 0.00 0.00 0.00 1.78
580 616 9.606631 GAGTTCTCTCCTGTTTGTTTATCATAT 57.393 33.333 0.00 0.00 34.87 1.78
581 617 8.816894 AGAGTTCTCTCCTGTTTGTTTATCATA 58.183 33.333 0.00 0.00 41.26 2.15
582 618 7.605691 CAGAGTTCTCTCCTGTTTGTTTATCAT 59.394 37.037 0.00 0.00 41.26 2.45
652 688 0.824759 GGCTTAGGAAGGAGAAGCGA 59.175 55.000 0.00 0.00 45.27 4.93
739 1959 3.185299 TTGTGTTGGGTCCGGCGAT 62.185 57.895 9.30 0.00 0.00 4.58
822 2058 1.767088 GTGGGGGAGTGTATTAGGGAC 59.233 57.143 0.00 0.00 0.00 4.46
823 2059 1.366787 TGTGGGGGAGTGTATTAGGGA 59.633 52.381 0.00 0.00 0.00 4.20
824 2060 1.489230 GTGTGGGGGAGTGTATTAGGG 59.511 57.143 0.00 0.00 0.00 3.53
825 2061 2.478292 AGTGTGGGGGAGTGTATTAGG 58.522 52.381 0.00 0.00 0.00 2.69
846 2082 2.226039 TGAAGTGGGGAGGAGGGATTTA 60.226 50.000 0.00 0.00 0.00 1.40
895 2131 0.039180 GGAATGGGAACGGAAGGGTT 59.961 55.000 0.00 0.00 0.00 4.11
954 2190 0.326618 CCACAGATCCCCTACCACCT 60.327 60.000 0.00 0.00 0.00 4.00
1325 2587 2.879233 GCGAGGGTGAACTGGTCCA 61.879 63.158 0.00 0.00 0.00 4.02
1402 2664 0.676782 ACCGAAAATGAAGGGCGGAG 60.677 55.000 0.00 0.00 44.43 4.63
1405 2667 1.268352 TGAAACCGAAAATGAAGGGCG 59.732 47.619 0.00 0.00 0.00 6.13
1451 2718 1.270625 ACGAAAAGAACATCCGCTGGA 60.271 47.619 0.00 0.00 35.55 3.86
1469 2765 1.274596 CTCCGGTCGGAACAATTACG 58.725 55.000 13.36 0.00 44.66 3.18
1472 2768 2.265589 AAACTCCGGTCGGAACAATT 57.734 45.000 13.36 3.35 44.66 2.32
1473 2769 1.877443 CAAAACTCCGGTCGGAACAAT 59.123 47.619 13.36 0.00 44.66 2.71
1474 2770 1.301423 CAAAACTCCGGTCGGAACAA 58.699 50.000 13.36 0.00 44.66 2.83
1475 2771 0.533308 CCAAAACTCCGGTCGGAACA 60.533 55.000 13.36 0.00 44.66 3.18
1476 2772 0.533531 ACCAAAACTCCGGTCGGAAC 60.534 55.000 13.36 0.00 44.66 3.62
1477 2773 0.180878 AACCAAAACTCCGGTCGGAA 59.819 50.000 13.36 0.00 44.66 4.30
1478 2774 0.249996 GAACCAAAACTCCGGTCGGA 60.250 55.000 11.83 11.83 42.90 4.55
1479 2775 0.250166 AGAACCAAAACTCCGGTCGG 60.250 55.000 0.00 2.52 33.17 4.79
1480 2776 0.865769 CAGAACCAAAACTCCGGTCG 59.134 55.000 0.00 0.00 33.17 4.79
1481 2777 2.249844 TCAGAACCAAAACTCCGGTC 57.750 50.000 0.00 0.00 33.17 4.79
1482 2778 2.951229 ATCAGAACCAAAACTCCGGT 57.049 45.000 0.00 0.00 36.98 5.28
1483 2779 5.335661 CCTTAAATCAGAACCAAAACTCCGG 60.336 44.000 0.00 0.00 0.00 5.14
1484 2780 5.699839 CCTTAAATCAGAACCAAAACTCCG 58.300 41.667 0.00 0.00 0.00 4.63
1485 2781 5.470368 GCCTTAAATCAGAACCAAAACTCC 58.530 41.667 0.00 0.00 0.00 3.85
1486 2782 5.154222 CGCCTTAAATCAGAACCAAAACTC 58.846 41.667 0.00 0.00 0.00 3.01
1487 2783 4.583073 ACGCCTTAAATCAGAACCAAAACT 59.417 37.500 0.00 0.00 0.00 2.66
1488 2784 4.679654 CACGCCTTAAATCAGAACCAAAAC 59.320 41.667 0.00 0.00 0.00 2.43
1489 2785 4.580995 TCACGCCTTAAATCAGAACCAAAA 59.419 37.500 0.00 0.00 0.00 2.44
1490 2786 4.138290 TCACGCCTTAAATCAGAACCAAA 58.862 39.130 0.00 0.00 0.00 3.28
1491 2787 3.745799 TCACGCCTTAAATCAGAACCAA 58.254 40.909 0.00 0.00 0.00 3.67
1492 2788 3.334691 CTCACGCCTTAAATCAGAACCA 58.665 45.455 0.00 0.00 0.00 3.67
1493 2789 2.096013 GCTCACGCCTTAAATCAGAACC 59.904 50.000 0.00 0.00 0.00 3.62
1494 2790 3.003480 AGCTCACGCCTTAAATCAGAAC 58.997 45.455 0.00 0.00 36.60 3.01
1495 2791 3.002791 CAGCTCACGCCTTAAATCAGAA 58.997 45.455 0.00 0.00 36.60 3.02
1549 2849 2.815158 ACAAAACCACCAGAAACACCT 58.185 42.857 0.00 0.00 0.00 4.00
1592 2892 0.972471 CCCCATTCAGGCAAGGAACC 60.972 60.000 0.00 0.00 35.39 3.62
1593 2893 0.972471 CCCCCATTCAGGCAAGGAAC 60.972 60.000 0.00 0.00 35.39 3.62
2058 3397 4.649218 AGAGTTGGTTTTTACCTGTGCAAT 59.351 37.500 0.00 0.00 0.00 3.56
2063 3402 4.513406 TCCAGAGTTGGTTTTTACCTGT 57.487 40.909 0.00 0.00 45.26 4.00
2074 3413 7.099764 GTCCATGTATGTATATCCAGAGTTGG 58.900 42.308 0.00 0.00 46.49 3.77
2102 3441 0.250338 AACCGAGTGGCAGGAACTTC 60.250 55.000 0.00 0.00 39.70 3.01
2118 3457 8.831715 AACAAAATTCACATTAGGAATGAACC 57.168 30.769 6.21 0.00 41.46 3.62
2413 3752 1.443407 CAGCATCTGACCGGGGTAG 59.557 63.158 6.32 0.21 32.44 3.18
2453 3792 6.180472 CCCCACATATATTCATCCCAGTAAC 58.820 44.000 0.00 0.00 0.00 2.50
2457 3796 4.568380 CCACCCCACATATATTCATCCCAG 60.568 50.000 0.00 0.00 0.00 4.45
2472 3811 1.674322 CATCCACGAACCACCCCAC 60.674 63.158 0.00 0.00 0.00 4.61
2550 3889 2.288213 ACGAGAGAAAACGTGAGCATGA 60.288 45.455 0.00 0.00 41.17 3.07
2551 3890 2.061773 ACGAGAGAAAACGTGAGCATG 58.938 47.619 0.00 0.00 41.17 4.06
2577 3916 2.359900 CAGCTGAACACCCCATAGTTC 58.640 52.381 8.42 0.00 43.31 3.01
2636 3975 8.675504 TCAAGAATTAAACGAAACCAAGTTACA 58.324 29.630 0.00 0.00 0.00 2.41
2640 3979 7.066525 TGTCTCAAGAATTAAACGAAACCAAGT 59.933 33.333 0.00 0.00 0.00 3.16
2660 3999 1.065199 GTCAGCATGGGGAATGTCTCA 60.065 52.381 0.00 0.00 38.65 3.27
2661 4000 1.673168 GTCAGCATGGGGAATGTCTC 58.327 55.000 0.00 0.00 38.65 3.36
2692 4031 7.928307 ACTTGACAAGTATCATGCAAACTAT 57.072 32.000 19.28 0.00 40.69 2.12
2709 4048 1.542492 GACGGAGGGAGTACTTGACA 58.458 55.000 0.00 0.00 0.00 3.58
2710 4049 0.816373 GGACGGAGGGAGTACTTGAC 59.184 60.000 0.00 0.00 0.00 3.18
2711 4050 0.324091 GGGACGGAGGGAGTACTTGA 60.324 60.000 0.00 0.00 0.00 3.02
2712 4051 0.613853 TGGGACGGAGGGAGTACTTG 60.614 60.000 0.00 0.00 0.00 3.16
2713 4052 0.338814 ATGGGACGGAGGGAGTACTT 59.661 55.000 0.00 0.00 0.00 2.24
2714 4053 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2718 4057 1.041447 ACGTTATGGGACGGAGGGAG 61.041 60.000 2.39 0.00 46.77 4.30
2772 4275 2.101917 CGGTCCCATAATGTAAGACGGT 59.898 50.000 0.00 0.00 0.00 4.83
2907 4410 3.417069 TCACATGGTAGGACAAGTTGG 57.583 47.619 7.96 0.00 0.00 3.77
2980 4483 3.983410 AGGTATATCCACCAAGCAGGAAT 59.017 43.478 1.83 0.00 41.40 3.01
3002 4505 5.875224 TGACATGGTTTCAACAGAATCCTA 58.125 37.500 0.00 0.00 33.95 2.94
3151 4654 5.416639 ACAAGCATAAACATCAGATTCTGCA 59.583 36.000 8.89 0.00 33.81 4.41
3601 5104 7.119699 TGCAAGATAATTCAGTAAACTGTCCTG 59.880 37.037 9.81 1.98 44.12 3.86
3790 5293 3.074538 ACCTACCTGAGTCCTTGCAAAAT 59.925 43.478 0.00 0.00 0.00 1.82
3887 5390 6.602410 AGATATACTCCATCTGACACATGG 57.398 41.667 3.42 3.42 42.16 3.66
3906 5411 6.496565 TCTTCAAAGGATTTTTGCCCAAGATA 59.503 34.615 0.00 0.00 35.03 1.98
4549 6054 3.024547 TGGAAACAGAGGGAGTAGATCG 58.975 50.000 0.00 0.00 35.01 3.69
4556 6061 6.660949 AGACAAATATTTGGAAACAGAGGGAG 59.339 38.462 27.43 2.64 44.54 4.30
4557 6062 6.552008 AGACAAATATTTGGAAACAGAGGGA 58.448 36.000 27.43 0.00 44.54 4.20
4558 6063 6.840780 AGACAAATATTTGGAAACAGAGGG 57.159 37.500 27.43 3.22 44.54 4.30
4559 6064 7.177392 AGGAAGACAAATATTTGGAAACAGAGG 59.823 37.037 27.43 3.68 44.54 3.69
4560 6065 8.115490 AGGAAGACAAATATTTGGAAACAGAG 57.885 34.615 27.43 4.34 44.54 3.35
4561 6066 9.231297 CTAGGAAGACAAATATTTGGAAACAGA 57.769 33.333 27.43 10.48 44.54 3.41
4562 6067 9.231297 TCTAGGAAGACAAATATTTGGAAACAG 57.769 33.333 27.43 16.30 44.54 3.16
4579 6084 7.020827 AGTCCATTTGAAATGTCTAGGAAGA 57.979 36.000 15.93 1.84 0.00 2.87
4580 6085 8.043710 AGTAGTCCATTTGAAATGTCTAGGAAG 58.956 37.037 15.93 0.00 0.00 3.46
4581 6086 7.918076 AGTAGTCCATTTGAAATGTCTAGGAA 58.082 34.615 15.93 0.00 0.00 3.36
4582 6087 7.496346 AGTAGTCCATTTGAAATGTCTAGGA 57.504 36.000 15.93 3.76 0.00 2.94
4583 6088 8.258007 TGTAGTAGTCCATTTGAAATGTCTAGG 58.742 37.037 15.93 1.41 0.00 3.02
4584 6089 9.823647 ATGTAGTAGTCCATTTGAAATGTCTAG 57.176 33.333 15.93 1.90 0.00 2.43
4588 6093 9.342308 CCATATGTAGTAGTCCATTTGAAATGT 57.658 33.333 15.93 1.43 0.00 2.71
4589 6094 9.559732 TCCATATGTAGTAGTCCATTTGAAATG 57.440 33.333 10.84 10.84 0.00 2.32
4591 6096 9.559732 CATCCATATGTAGTAGTCCATTTGAAA 57.440 33.333 1.24 0.00 0.00 2.69
4592 6097 8.713971 ACATCCATATGTAGTAGTCCATTTGAA 58.286 33.333 1.24 0.00 44.66 2.69
4593 6098 8.262601 ACATCCATATGTAGTAGTCCATTTGA 57.737 34.615 1.24 0.00 44.66 2.69
4634 6139 9.415544 GAAGCAAAATGATTCAATCTACACTTT 57.584 29.630 0.00 0.00 41.94 2.66
4635 6140 7.752239 CGAAGCAAAATGATTCAATCTACACTT 59.248 33.333 8.79 0.00 42.41 3.16
4636 6141 7.094634 ACGAAGCAAAATGATTCAATCTACACT 60.095 33.333 8.79 0.00 42.41 3.55
4637 6142 7.023575 ACGAAGCAAAATGATTCAATCTACAC 58.976 34.615 8.79 0.00 42.41 2.90
4638 6143 7.144722 ACGAAGCAAAATGATTCAATCTACA 57.855 32.000 8.79 0.00 42.41 2.74
4639 6144 9.162793 CATACGAAGCAAAATGATTCAATCTAC 57.837 33.333 8.79 0.00 42.41 2.59
4640 6145 8.892723 ACATACGAAGCAAAATGATTCAATCTA 58.107 29.630 8.79 0.00 42.41 1.98
4641 6146 7.765307 ACATACGAAGCAAAATGATTCAATCT 58.235 30.769 8.79 0.00 42.41 2.40
4642 6147 7.975866 ACATACGAAGCAAAATGATTCAATC 57.024 32.000 8.79 0.00 42.41 2.67
4643 6148 8.677300 ACTACATACGAAGCAAAATGATTCAAT 58.323 29.630 8.79 0.00 42.41 2.57
4644 6149 8.039603 ACTACATACGAAGCAAAATGATTCAA 57.960 30.769 8.79 0.00 42.41 2.69
4645 6150 7.333174 TGACTACATACGAAGCAAAATGATTCA 59.667 33.333 8.79 0.00 42.41 2.57
4646 6151 7.636359 GTGACTACATACGAAGCAAAATGATTC 59.364 37.037 0.00 0.00 39.22 2.52
4647 6152 7.334421 AGTGACTACATACGAAGCAAAATGATT 59.666 33.333 0.00 0.00 0.00 2.57
4648 6153 6.818644 AGTGACTACATACGAAGCAAAATGAT 59.181 34.615 0.00 0.00 0.00 2.45
4649 6154 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
4650 6155 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
4651 6156 8.718102 ATAAGTGACTACATACGAAGCAAAAT 57.282 30.769 0.00 0.00 0.00 1.82
4652 6157 8.542497 AATAAGTGACTACATACGAAGCAAAA 57.458 30.769 0.00 0.00 0.00 2.44
4653 6158 7.815549 TGAATAAGTGACTACATACGAAGCAAA 59.184 33.333 0.00 0.00 0.00 3.68
4654 6159 7.317390 TGAATAAGTGACTACATACGAAGCAA 58.683 34.615 0.00 0.00 0.00 3.91
4655 6160 6.859017 TGAATAAGTGACTACATACGAAGCA 58.141 36.000 0.00 0.00 0.00 3.91
4656 6161 7.751047 TTGAATAAGTGACTACATACGAAGC 57.249 36.000 0.00 0.00 0.00 3.86
4659 6164 9.731819 GAGATTTGAATAAGTGACTACATACGA 57.268 33.333 0.00 0.00 0.00 3.43
4660 6165 9.737427 AGAGATTTGAATAAGTGACTACATACG 57.263 33.333 0.00 0.00 0.00 3.06
4685 6190 9.846248 CCTGTTTCCAAATATTTGTCTTTCTAG 57.154 33.333 23.24 13.29 36.45 2.43
4686 6191 8.802267 CCCTGTTTCCAAATATTTGTCTTTCTA 58.198 33.333 23.24 6.17 36.45 2.10
4687 6192 7.508977 TCCCTGTTTCCAAATATTTGTCTTTCT 59.491 33.333 23.24 0.00 36.45 2.52
4688 6193 7.666623 TCCCTGTTTCCAAATATTTGTCTTTC 58.333 34.615 23.24 11.94 36.45 2.62
4689 6194 7.610580 TCCCTGTTTCCAAATATTTGTCTTT 57.389 32.000 23.24 0.00 36.45 2.52
4690 6195 6.295292 GCTCCCTGTTTCCAAATATTTGTCTT 60.295 38.462 23.24 0.00 36.45 3.01
4691 6196 5.185828 GCTCCCTGTTTCCAAATATTTGTCT 59.814 40.000 23.24 0.00 36.45 3.41
4692 6197 5.047377 TGCTCCCTGTTTCCAAATATTTGTC 60.047 40.000 23.24 12.77 36.45 3.18
4693 6198 4.837860 TGCTCCCTGTTTCCAAATATTTGT 59.162 37.500 23.24 0.00 36.45 2.83
4694 6199 5.404466 TGCTCCCTGTTTCCAAATATTTG 57.596 39.130 19.40 19.40 37.90 2.32
4695 6200 7.786464 AGATATGCTCCCTGTTTCCAAATATTT 59.214 33.333 0.00 0.00 0.00 1.40
4696 6201 7.232127 CAGATATGCTCCCTGTTTCCAAATATT 59.768 37.037 0.00 0.00 0.00 1.28
4697 6202 6.718454 CAGATATGCTCCCTGTTTCCAAATAT 59.282 38.462 0.00 0.00 0.00 1.28
4698 6203 6.064060 CAGATATGCTCCCTGTTTCCAAATA 58.936 40.000 0.00 0.00 0.00 1.40
4699 6204 4.891756 CAGATATGCTCCCTGTTTCCAAAT 59.108 41.667 0.00 0.00 0.00 2.32
4700 6205 4.263905 ACAGATATGCTCCCTGTTTCCAAA 60.264 41.667 0.00 0.00 37.86 3.28
4701 6206 3.266772 ACAGATATGCTCCCTGTTTCCAA 59.733 43.478 0.00 0.00 37.86 3.53
4702 6207 2.846206 ACAGATATGCTCCCTGTTTCCA 59.154 45.455 0.00 0.00 37.86 3.53
4703 6208 3.567478 ACAGATATGCTCCCTGTTTCC 57.433 47.619 0.00 0.00 37.86 3.13
4704 6209 5.283457 AGTACAGATATGCTCCCTGTTTC 57.717 43.478 0.00 0.00 41.01 2.78
4705 6210 5.700402 AAGTACAGATATGCTCCCTGTTT 57.300 39.130 0.00 0.00 41.01 2.83
4706 6211 5.045578 ACAAAGTACAGATATGCTCCCTGTT 60.046 40.000 0.00 0.00 41.01 3.16
4707 6212 4.471386 ACAAAGTACAGATATGCTCCCTGT 59.529 41.667 0.00 0.00 42.94 4.00
4708 6213 5.028549 ACAAAGTACAGATATGCTCCCTG 57.971 43.478 0.00 0.00 0.00 4.45
4709 6214 6.041069 GTCTACAAAGTACAGATATGCTCCCT 59.959 42.308 0.00 0.00 0.00 4.20
4710 6215 6.183360 TGTCTACAAAGTACAGATATGCTCCC 60.183 42.308 0.00 0.00 0.00 4.30
4711 6216 6.806751 TGTCTACAAAGTACAGATATGCTCC 58.193 40.000 0.00 0.00 0.00 4.70
4712 6217 8.138074 TGATGTCTACAAAGTACAGATATGCTC 58.862 37.037 0.00 0.00 0.00 4.26
4713 6218 8.011844 TGATGTCTACAAAGTACAGATATGCT 57.988 34.615 0.00 0.00 0.00 3.79
4714 6219 8.648557 TTGATGTCTACAAAGTACAGATATGC 57.351 34.615 0.00 0.00 0.00 3.14
4812 6318 9.826574 TGTTATGGATATGTAGTGGTTCTAAAC 57.173 33.333 0.00 0.00 0.00 2.01
4817 6323 7.656137 ACGAATGTTATGGATATGTAGTGGTTC 59.344 37.037 0.00 0.00 0.00 3.62
4853 6359 1.101049 ACAAGTGGTTGGAGCGGTTG 61.101 55.000 0.00 0.00 38.07 3.77
4854 6360 1.101049 CACAAGTGGTTGGAGCGGTT 61.101 55.000 0.00 0.00 38.07 4.44
4855 6361 1.525995 CACAAGTGGTTGGAGCGGT 60.526 57.895 0.00 0.00 38.07 5.68
4856 6362 1.507141 GACACAAGTGGTTGGAGCGG 61.507 60.000 5.08 0.00 38.07 5.52
4857 6363 1.507141 GGACACAAGTGGTTGGAGCG 61.507 60.000 5.08 0.00 38.07 5.03
4858 6364 0.465460 TGGACACAAGTGGTTGGAGC 60.465 55.000 5.08 0.00 38.07 4.70
4859 6365 1.308998 GTGGACACAAGTGGTTGGAG 58.691 55.000 5.08 0.00 38.07 3.86
4860 6366 0.462937 CGTGGACACAAGTGGTTGGA 60.463 55.000 5.08 0.00 38.07 3.53
4861 6367 0.746563 ACGTGGACACAAGTGGTTGG 60.747 55.000 5.08 0.00 37.91 3.77
4879 6385 0.902531 TCCAAATCTCCGTCAGGGAC 59.097 55.000 0.00 0.00 40.94 4.46
4890 6396 2.767960 GTGGGGCAAATGATCCAAATCT 59.232 45.455 0.00 0.00 32.75 2.40
4922 6428 2.498481 CAACACTGGGGCAAATCATCAT 59.502 45.455 0.00 0.00 0.00 2.45
4938 6444 3.853307 GCAACTAGCCATTGACACAACAC 60.853 47.826 0.00 0.00 37.23 3.32
4953 6459 1.527370 GTAGGGCCAGGGCAACTAG 59.473 63.158 16.36 0.00 44.11 2.57
4958 6464 4.675303 ACAGGTAGGGCCAGGGCA 62.675 66.667 16.36 0.00 44.11 5.36
4959 6465 3.798511 GACAGGTAGGGCCAGGGC 61.799 72.222 6.18 3.77 40.61 5.19
5228 6734 7.060421 TGAATCTTTTGTCCCAGTTTACTTCT 58.940 34.615 0.00 0.00 0.00 2.85
5229 6735 7.272037 TGAATCTTTTGTCCCAGTTTACTTC 57.728 36.000 0.00 0.00 0.00 3.01
5230 6736 7.654022 TTGAATCTTTTGTCCCAGTTTACTT 57.346 32.000 0.00 0.00 0.00 2.24
5231 6737 7.839680 ATTGAATCTTTTGTCCCAGTTTACT 57.160 32.000 0.00 0.00 0.00 2.24
5232 6738 8.887036 AAATTGAATCTTTTGTCCCAGTTTAC 57.113 30.769 0.00 0.00 0.00 2.01
5233 6739 8.923270 AGAAATTGAATCTTTTGTCCCAGTTTA 58.077 29.630 0.00 0.00 0.00 2.01
5234 6740 7.795047 AGAAATTGAATCTTTTGTCCCAGTTT 58.205 30.769 0.00 0.00 0.00 2.66
5235 6741 7.365497 AGAAATTGAATCTTTTGTCCCAGTT 57.635 32.000 0.00 0.00 0.00 3.16
5236 6742 6.983906 AGAAATTGAATCTTTTGTCCCAGT 57.016 33.333 0.00 0.00 0.00 4.00
5237 6743 7.436118 TGAAGAAATTGAATCTTTTGTCCCAG 58.564 34.615 0.00 0.00 37.26 4.45
5238 6744 7.358770 TGAAGAAATTGAATCTTTTGTCCCA 57.641 32.000 0.00 0.00 37.26 4.37
5239 6745 7.547019 GGATGAAGAAATTGAATCTTTTGTCCC 59.453 37.037 0.00 0.00 37.26 4.46
5240 6746 7.547019 GGGATGAAGAAATTGAATCTTTTGTCC 59.453 37.037 0.00 0.00 37.26 4.02
5241 6747 8.309656 AGGGATGAAGAAATTGAATCTTTTGTC 58.690 33.333 0.00 0.00 37.26 3.18
5242 6748 8.092687 CAGGGATGAAGAAATTGAATCTTTTGT 58.907 33.333 0.00 0.00 37.26 2.83
5243 6749 8.308931 TCAGGGATGAAGAAATTGAATCTTTTG 58.691 33.333 0.00 0.00 37.26 2.44
5244 6750 8.309656 GTCAGGGATGAAGAAATTGAATCTTTT 58.690 33.333 0.00 0.00 37.26 2.27
5245 6751 7.093596 GGTCAGGGATGAAGAAATTGAATCTTT 60.094 37.037 0.00 0.00 37.26 2.52
5246 6752 6.379417 GGTCAGGGATGAAGAAATTGAATCTT 59.621 38.462 0.00 0.00 39.76 2.40
5247 6753 5.890419 GGTCAGGGATGAAGAAATTGAATCT 59.110 40.000 0.00 0.00 0.00 2.40
5248 6754 5.890419 AGGTCAGGGATGAAGAAATTGAATC 59.110 40.000 0.00 0.00 0.00 2.52
5249 6755 5.655532 CAGGTCAGGGATGAAGAAATTGAAT 59.344 40.000 0.00 0.00 0.00 2.57
5250 6756 5.012239 CAGGTCAGGGATGAAGAAATTGAA 58.988 41.667 0.00 0.00 0.00 2.69
5251 6757 4.568380 CCAGGTCAGGGATGAAGAAATTGA 60.568 45.833 0.00 0.00 0.00 2.57
5252 6758 3.698040 CCAGGTCAGGGATGAAGAAATTG 59.302 47.826 0.00 0.00 0.00 2.32
5253 6759 3.593328 TCCAGGTCAGGGATGAAGAAATT 59.407 43.478 0.00 0.00 0.00 1.82
5254 6760 3.054065 GTCCAGGTCAGGGATGAAGAAAT 60.054 47.826 0.00 0.00 36.67 2.17
5255 6761 2.305927 GTCCAGGTCAGGGATGAAGAAA 59.694 50.000 0.00 0.00 36.67 2.52
5256 6762 1.909302 GTCCAGGTCAGGGATGAAGAA 59.091 52.381 0.00 0.00 36.67 2.52
5257 6763 1.203300 TGTCCAGGTCAGGGATGAAGA 60.203 52.381 0.00 0.00 36.67 2.87
5258 6764 1.279496 TGTCCAGGTCAGGGATGAAG 58.721 55.000 0.00 0.00 36.67 3.02
5259 6765 1.630369 CTTGTCCAGGTCAGGGATGAA 59.370 52.381 0.00 0.00 36.67 2.57
5260 6766 1.203300 TCTTGTCCAGGTCAGGGATGA 60.203 52.381 0.00 0.00 36.67 2.92
5261 6767 1.065854 GTCTTGTCCAGGTCAGGGATG 60.066 57.143 0.00 0.00 36.67 3.51
5262 6768 1.280457 GTCTTGTCCAGGTCAGGGAT 58.720 55.000 0.00 0.00 36.67 3.85
5263 6769 0.836400 GGTCTTGTCCAGGTCAGGGA 60.836 60.000 0.00 0.00 0.00 4.20
5264 6770 1.127567 TGGTCTTGTCCAGGTCAGGG 61.128 60.000 0.00 0.00 33.19 4.45
5265 6771 0.987294 ATGGTCTTGTCCAGGTCAGG 59.013 55.000 0.00 0.00 41.05 3.86
5266 6772 2.704572 GAATGGTCTTGTCCAGGTCAG 58.295 52.381 0.00 0.00 41.05 3.51
5267 6773 1.001974 CGAATGGTCTTGTCCAGGTCA 59.998 52.381 0.00 0.00 41.05 4.02
5268 6774 1.275291 TCGAATGGTCTTGTCCAGGTC 59.725 52.381 0.00 0.00 41.05 3.85
5269 6775 1.002087 GTCGAATGGTCTTGTCCAGGT 59.998 52.381 0.00 0.00 41.05 4.00
5270 6776 1.676014 GGTCGAATGGTCTTGTCCAGG 60.676 57.143 0.00 0.00 41.05 4.45
5271 6777 1.001974 TGGTCGAATGGTCTTGTCCAG 59.998 52.381 0.00 0.00 41.05 3.86
5272 6778 1.052617 TGGTCGAATGGTCTTGTCCA 58.947 50.000 0.00 0.00 42.01 4.02
5273 6779 2.178912 TTGGTCGAATGGTCTTGTCC 57.821 50.000 0.00 0.00 0.00 4.02
5274 6780 4.215399 TGAATTTGGTCGAATGGTCTTGTC 59.785 41.667 0.00 0.00 0.00 3.18
5275 6781 4.141287 TGAATTTGGTCGAATGGTCTTGT 58.859 39.130 0.00 0.00 0.00 3.16
5276 6782 4.764679 TGAATTTGGTCGAATGGTCTTG 57.235 40.909 0.00 0.00 0.00 3.02
5277 6783 5.314923 CATGAATTTGGTCGAATGGTCTT 57.685 39.130 0.00 0.00 0.00 3.01
5278 6784 4.970662 CATGAATTTGGTCGAATGGTCT 57.029 40.909 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.