Multiple sequence alignment - TraesCS4B01G173000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G173000 chr4B 100.000 6032 0 0 1 6032 377932254 377938285 0.000000e+00 11140.0
1 TraesCS4B01G173000 chr4B 97.351 151 4 0 1 151 449732401 449732251 2.160000e-64 257.0
2 TraesCS4B01G173000 chr4A 95.507 2582 84 18 3468 6032 175859667 175857101 0.000000e+00 4096.0
3 TraesCS4B01G173000 chr4A 89.519 1746 123 22 416 2107 175861390 175859651 0.000000e+00 2156.0
4 TraesCS4B01G173000 chr4D 96.570 2420 63 9 3616 6030 303516069 303518473 0.000000e+00 3991.0
5 TraesCS4B01G173000 chr4D 91.674 2342 149 25 145 2461 303512094 303514414 0.000000e+00 3203.0
6 TraesCS4B01G173000 chr4D 95.394 1129 47 4 2496 3621 303514677 303515803 0.000000e+00 1792.0
7 TraesCS4B01G173000 chr5D 92.177 1355 97 8 2108 3456 332940659 332939308 0.000000e+00 1906.0
8 TraesCS4B01G173000 chr5D 80.964 788 130 15 2419 3198 494253391 494254166 1.860000e-169 606.0
9 TraesCS4B01G173000 chr5D 79.181 879 157 23 2332 3198 251427678 251428542 2.420000e-163 586.0
10 TraesCS4B01G173000 chr1A 89.110 1359 122 16 2109 3455 361178755 361177411 0.000000e+00 1666.0
11 TraesCS4B01G173000 chr6D 89.537 1252 119 10 2108 3350 317856357 317857605 0.000000e+00 1576.0
12 TraesCS4B01G173000 chr6D 81.758 1058 170 20 2111 3155 287388459 287387412 0.000000e+00 863.0
13 TraesCS4B01G173000 chr6D 83.080 591 84 9 215 791 394210156 394209568 1.930000e-144 523.0
14 TraesCS4B01G173000 chr6D 100.000 31 0 0 3400 3430 43194929 43194959 2.350000e-04 58.4
15 TraesCS4B01G173000 chr2A 86.829 1359 130 30 2109 3454 443628925 443627603 0.000000e+00 1472.0
16 TraesCS4B01G173000 chr2A 82.022 623 102 8 184 798 11009107 11009727 6.930000e-144 521.0
17 TraesCS4B01G173000 chr7B 91.750 800 55 7 2108 2898 87144853 87145650 0.000000e+00 1101.0
18 TraesCS4B01G173000 chr7B 81.759 614 93 10 194 791 107765446 107764836 4.200000e-136 496.0
19 TraesCS4B01G173000 chr7B 96.774 155 5 0 1 155 278498879 278498725 6.000000e-65 259.0
20 TraesCS4B01G173000 chr7B 96.178 157 5 1 1 156 67732872 67732716 7.760000e-64 255.0
21 TraesCS4B01G173000 chr7B 95.031 161 7 1 1 160 616949721 616949561 1.000000e-62 252.0
22 TraesCS4B01G173000 chr2B 79.026 1397 224 49 2108 3455 729060496 729059120 0.000000e+00 893.0
23 TraesCS4B01G173000 chr2B 94.444 162 7 2 1 160 522108775 522108614 1.300000e-61 248.0
24 TraesCS4B01G173000 chr2B 80.337 178 29 4 3279 3455 21205332 21205160 4.910000e-26 130.0
25 TraesCS4B01G173000 chr3A 82.960 892 116 31 2109 2983 599992508 599993380 0.000000e+00 773.0
26 TraesCS4B01G173000 chr3A 79.221 616 109 15 196 798 652729354 652728745 1.560000e-110 411.0
27 TraesCS4B01G173000 chr2D 85.833 600 82 3 194 791 10735505 10736103 8.530000e-178 634.0
28 TraesCS4B01G173000 chr2D 83.414 621 85 9 191 798 429082288 429081673 1.470000e-155 560.0
29 TraesCS4B01G173000 chr6A 82.867 607 90 6 194 787 438026745 438026140 3.200000e-147 532.0
30 TraesCS4B01G173000 chr6A 77.414 611 129 8 194 799 79671316 79670710 7.440000e-94 355.0
31 TraesCS4B01G173000 chr7D 84.274 496 75 3 194 688 525360142 525360635 1.180000e-131 481.0
32 TraesCS4B01G173000 chr5B 81.015 611 99 11 194 790 72078315 72077708 2.550000e-128 470.0
33 TraesCS4B01G173000 chr5B 97.351 151 4 0 1 151 305144663 305144813 2.160000e-64 257.0
34 TraesCS4B01G173000 chr7A 79.963 544 102 7 253 791 691054492 691053951 1.580000e-105 394.0
35 TraesCS4B01G173000 chr7A 78.702 601 114 11 194 791 523634687 523634098 7.330000e-104 388.0
36 TraesCS4B01G173000 chr5A 78.571 616 114 14 196 798 10118324 10117714 2.040000e-104 390.0
37 TraesCS4B01G173000 chr5A 73.345 574 126 23 236 798 119838262 119838819 2.870000e-43 187.0
38 TraesCS4B01G173000 chr6B 95.062 162 6 2 1 160 101750889 101750728 2.790000e-63 254.0
39 TraesCS4B01G173000 chr3B 95.570 158 5 2 1 157 593312557 593312713 1.000000e-62 252.0
40 TraesCS4B01G173000 chr3B 95.570 158 4 3 1 156 61233953 61234109 3.610000e-62 250.0
41 TraesCS4B01G173000 chr1B 95.918 49 1 1 3407 3455 654045849 654045896 1.800000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G173000 chr4B 377932254 377938285 6031 False 11140.000000 11140 100.000 1 6032 1 chr4B.!!$F1 6031
1 TraesCS4B01G173000 chr4A 175857101 175861390 4289 True 3126.000000 4096 92.513 416 6032 2 chr4A.!!$R1 5616
2 TraesCS4B01G173000 chr4D 303512094 303518473 6379 False 2995.333333 3991 94.546 145 6030 3 chr4D.!!$F1 5885
3 TraesCS4B01G173000 chr5D 332939308 332940659 1351 True 1906.000000 1906 92.177 2108 3456 1 chr5D.!!$R1 1348
4 TraesCS4B01G173000 chr5D 494253391 494254166 775 False 606.000000 606 80.964 2419 3198 1 chr5D.!!$F2 779
5 TraesCS4B01G173000 chr5D 251427678 251428542 864 False 586.000000 586 79.181 2332 3198 1 chr5D.!!$F1 866
6 TraesCS4B01G173000 chr1A 361177411 361178755 1344 True 1666.000000 1666 89.110 2109 3455 1 chr1A.!!$R1 1346
7 TraesCS4B01G173000 chr6D 317856357 317857605 1248 False 1576.000000 1576 89.537 2108 3350 1 chr6D.!!$F2 1242
8 TraesCS4B01G173000 chr6D 287387412 287388459 1047 True 863.000000 863 81.758 2111 3155 1 chr6D.!!$R1 1044
9 TraesCS4B01G173000 chr6D 394209568 394210156 588 True 523.000000 523 83.080 215 791 1 chr6D.!!$R2 576
10 TraesCS4B01G173000 chr2A 443627603 443628925 1322 True 1472.000000 1472 86.829 2109 3454 1 chr2A.!!$R1 1345
11 TraesCS4B01G173000 chr2A 11009107 11009727 620 False 521.000000 521 82.022 184 798 1 chr2A.!!$F1 614
12 TraesCS4B01G173000 chr7B 87144853 87145650 797 False 1101.000000 1101 91.750 2108 2898 1 chr7B.!!$F1 790
13 TraesCS4B01G173000 chr7B 107764836 107765446 610 True 496.000000 496 81.759 194 791 1 chr7B.!!$R2 597
14 TraesCS4B01G173000 chr2B 729059120 729060496 1376 True 893.000000 893 79.026 2108 3455 1 chr2B.!!$R3 1347
15 TraesCS4B01G173000 chr3A 599992508 599993380 872 False 773.000000 773 82.960 2109 2983 1 chr3A.!!$F1 874
16 TraesCS4B01G173000 chr3A 652728745 652729354 609 True 411.000000 411 79.221 196 798 1 chr3A.!!$R1 602
17 TraesCS4B01G173000 chr2D 10735505 10736103 598 False 634.000000 634 85.833 194 791 1 chr2D.!!$F1 597
18 TraesCS4B01G173000 chr2D 429081673 429082288 615 True 560.000000 560 83.414 191 798 1 chr2D.!!$R1 607
19 TraesCS4B01G173000 chr6A 438026140 438026745 605 True 532.000000 532 82.867 194 787 1 chr6A.!!$R2 593
20 TraesCS4B01G173000 chr6A 79670710 79671316 606 True 355.000000 355 77.414 194 799 1 chr6A.!!$R1 605
21 TraesCS4B01G173000 chr5B 72077708 72078315 607 True 470.000000 470 81.015 194 790 1 chr5B.!!$R1 596
22 TraesCS4B01G173000 chr7A 691053951 691054492 541 True 394.000000 394 79.963 253 791 1 chr7A.!!$R2 538
23 TraesCS4B01G173000 chr7A 523634098 523634687 589 True 388.000000 388 78.702 194 791 1 chr7A.!!$R1 597
24 TraesCS4B01G173000 chr5A 10117714 10118324 610 True 390.000000 390 78.571 196 798 1 chr5A.!!$R1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 430 0.041090 GGGCTTCAATCCTCCCCAAA 59.959 55.000 0.00 0.00 35.75 3.28 F
881 919 0.461961 GACCTAGGAGCTCGCAACAT 59.538 55.000 17.98 0.00 0.00 2.71 F
1720 1789 1.281577 TGTATGTGCATTGGAGCAGGA 59.718 47.619 0.00 0.00 46.69 3.86 F
2198 2282 1.202568 CACTCGCTGCGAACAACAG 59.797 57.895 25.86 15.01 34.74 3.16 F
2860 3194 1.539124 GTGGTCCTCTCCCACCCTT 60.539 63.158 0.00 0.00 45.43 3.95 F
2947 3283 1.814772 CGTGCAAGGGCCAAATCCAA 61.815 55.000 6.18 0.00 40.13 3.53 F
3657 4311 3.367395 GGCTACTTGCTGAATTTCCAACC 60.367 47.826 0.00 0.00 42.39 3.77 F
4867 5522 2.560981 TGCTCGATCTTACTTCACACCA 59.439 45.455 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1618 0.607112 TACGCCCACACGAACCATAA 59.393 50.000 0.00 0.00 36.70 1.90 R
2071 2155 0.879090 GTCGCTTGGGTTAAGTTGGG 59.121 55.000 0.00 0.00 38.70 4.12 R
2860 3194 2.036571 TCGCGTTCTCTCGGCAGTA 61.037 57.895 5.77 0.00 0.00 2.74 R
3819 4473 1.079503 GAGAGGCGCAGGTTAGTTTG 58.920 55.000 10.83 0.00 0.00 2.93 R
3948 4603 1.205417 CCGCTTCAGGCATTTTCCAAT 59.795 47.619 0.00 0.00 41.91 3.16 R
4701 5356 2.231215 GCTGATCACGGCAGATAAGT 57.769 50.000 2.23 0.00 46.56 2.24 R
4872 5527 3.264193 TCTTTGGAGGCTCTATTTGCAGA 59.736 43.478 15.23 4.06 0.00 4.26 R
5832 6504 0.035343 CCGGACCTTTTCTTCCTCCC 60.035 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.139679 AGTATTTTGAGGGATCCACTTTCA 57.860 37.500 15.23 8.61 0.00 2.69
25 26 6.735556 AGTATTTTGAGGGATCCACTTTCAT 58.264 36.000 15.23 1.08 0.00 2.57
26 27 6.830838 AGTATTTTGAGGGATCCACTTTCATC 59.169 38.462 15.23 0.23 0.00 2.92
27 28 4.656100 TTTGAGGGATCCACTTTCATCA 57.344 40.909 15.23 2.88 0.00 3.07
28 29 4.868172 TTGAGGGATCCACTTTCATCAT 57.132 40.909 15.23 0.00 0.00 2.45
29 30 4.428294 TGAGGGATCCACTTTCATCATC 57.572 45.455 15.23 0.00 0.00 2.92
30 31 4.042884 TGAGGGATCCACTTTCATCATCT 58.957 43.478 15.23 0.00 0.00 2.90
31 32 5.218959 TGAGGGATCCACTTTCATCATCTA 58.781 41.667 15.23 0.00 0.00 1.98
32 33 5.848369 TGAGGGATCCACTTTCATCATCTAT 59.152 40.000 15.23 0.00 0.00 1.98
33 34 6.124316 AGGGATCCACTTTCATCATCTATG 57.876 41.667 15.23 0.00 36.88 2.23
34 35 5.610132 AGGGATCCACTTTCATCATCTATGT 59.390 40.000 15.23 0.00 36.89 2.29
35 36 5.936956 GGGATCCACTTTCATCATCTATGTC 59.063 44.000 15.23 0.00 36.89 3.06
36 37 6.464892 GGGATCCACTTTCATCATCTATGTCA 60.465 42.308 15.23 0.00 36.89 3.58
37 38 7.166851 GGATCCACTTTCATCATCTATGTCAT 58.833 38.462 6.95 0.00 36.89 3.06
38 39 7.119407 GGATCCACTTTCATCATCTATGTCATG 59.881 40.741 6.95 0.00 36.89 3.07
39 40 5.761726 TCCACTTTCATCATCTATGTCATGC 59.238 40.000 0.00 0.00 36.89 4.06
40 41 5.048921 CCACTTTCATCATCTATGTCATGCC 60.049 44.000 0.00 0.00 36.89 4.40
41 42 5.529800 CACTTTCATCATCTATGTCATGCCA 59.470 40.000 0.00 0.00 36.89 4.92
42 43 6.206829 CACTTTCATCATCTATGTCATGCCAT 59.793 38.462 0.00 0.00 36.89 4.40
43 44 6.776116 ACTTTCATCATCTATGTCATGCCATT 59.224 34.615 0.00 0.00 36.89 3.16
44 45 6.812879 TTCATCATCTATGTCATGCCATTC 57.187 37.500 0.00 0.00 36.89 2.67
45 46 5.871834 TCATCATCTATGTCATGCCATTCA 58.128 37.500 0.00 0.00 36.89 2.57
46 47 6.481643 TCATCATCTATGTCATGCCATTCAT 58.518 36.000 0.00 0.00 36.89 2.57
47 48 6.946009 TCATCATCTATGTCATGCCATTCATT 59.054 34.615 0.00 0.00 36.89 2.57
48 49 6.569179 TCATCTATGTCATGCCATTCATTG 57.431 37.500 0.00 0.00 31.79 2.82
49 50 6.300703 TCATCTATGTCATGCCATTCATTGA 58.699 36.000 0.00 6.35 31.79 2.57
50 51 6.430000 TCATCTATGTCATGCCATTCATTGAG 59.570 38.462 0.00 0.00 31.79 3.02
51 52 3.728076 ATGTCATGCCATTCATTGAGC 57.272 42.857 0.00 0.00 31.79 4.26
52 53 2.730382 TGTCATGCCATTCATTGAGCT 58.270 42.857 0.00 0.00 31.79 4.09
53 54 3.093814 TGTCATGCCATTCATTGAGCTT 58.906 40.909 0.00 0.00 31.79 3.74
54 55 3.512329 TGTCATGCCATTCATTGAGCTTT 59.488 39.130 0.00 0.00 31.79 3.51
55 56 4.020928 TGTCATGCCATTCATTGAGCTTTT 60.021 37.500 0.00 0.00 31.79 2.27
56 57 4.565564 GTCATGCCATTCATTGAGCTTTTC 59.434 41.667 0.00 0.00 31.79 2.29
57 58 4.464951 TCATGCCATTCATTGAGCTTTTCT 59.535 37.500 0.00 0.00 31.79 2.52
58 59 4.182693 TGCCATTCATTGAGCTTTTCTG 57.817 40.909 0.00 0.00 0.00 3.02
59 60 3.827876 TGCCATTCATTGAGCTTTTCTGA 59.172 39.130 0.00 0.00 0.00 3.27
60 61 4.281435 TGCCATTCATTGAGCTTTTCTGAA 59.719 37.500 0.00 0.00 0.00 3.02
61 62 5.221481 TGCCATTCATTGAGCTTTTCTGAAA 60.221 36.000 0.00 0.00 30.39 2.69
62 63 5.873164 GCCATTCATTGAGCTTTTCTGAAAT 59.127 36.000 3.31 0.00 30.39 2.17
63 64 7.037438 GCCATTCATTGAGCTTTTCTGAAATA 58.963 34.615 3.31 0.00 30.39 1.40
64 65 7.546667 GCCATTCATTGAGCTTTTCTGAAATAA 59.453 33.333 3.31 0.00 30.39 1.40
65 66 9.595823 CCATTCATTGAGCTTTTCTGAAATAAT 57.404 29.630 3.31 0.00 30.39 1.28
73 74 8.950210 TGAGCTTTTCTGAAATAATAGTCTTGG 58.050 33.333 3.31 0.00 0.00 3.61
74 75 9.167311 GAGCTTTTCTGAAATAATAGTCTTGGA 57.833 33.333 3.31 0.00 0.00 3.53
75 76 9.520515 AGCTTTTCTGAAATAATAGTCTTGGAA 57.479 29.630 3.31 0.00 0.00 3.53
102 103 7.678947 GCATTAGCTCAATGAGGTATATGTT 57.321 36.000 26.01 11.55 45.99 2.71
103 104 7.524912 GCATTAGCTCAATGAGGTATATGTTG 58.475 38.462 26.01 18.70 45.99 3.33
104 105 7.173907 GCATTAGCTCAATGAGGTATATGTTGT 59.826 37.037 26.01 9.97 45.99 3.32
105 106 9.060347 CATTAGCTCAATGAGGTATATGTTGTT 57.940 33.333 20.94 0.00 45.99 2.83
108 109 8.613060 AGCTCAATGAGGTATATGTTGTTATG 57.387 34.615 13.82 0.00 38.70 1.90
109 110 8.432013 AGCTCAATGAGGTATATGTTGTTATGA 58.568 33.333 13.82 0.00 38.70 2.15
110 111 9.056005 GCTCAATGAGGTATATGTTGTTATGAA 57.944 33.333 12.66 0.00 0.00 2.57
123 124 8.825667 ATGTTGTTATGAATTACCAAAACCAC 57.174 30.769 0.00 0.00 0.00 4.16
124 125 7.210873 TGTTGTTATGAATTACCAAAACCACC 58.789 34.615 0.00 0.00 0.00 4.61
125 126 7.070074 TGTTGTTATGAATTACCAAAACCACCT 59.930 33.333 0.00 0.00 0.00 4.00
126 127 8.578151 GTTGTTATGAATTACCAAAACCACCTA 58.422 33.333 0.00 0.00 0.00 3.08
127 128 8.343168 TGTTATGAATTACCAAAACCACCTAG 57.657 34.615 0.00 0.00 0.00 3.02
128 129 7.394923 TGTTATGAATTACCAAAACCACCTAGG 59.605 37.037 7.41 7.41 45.67 3.02
129 130 4.668636 TGAATTACCAAAACCACCTAGGG 58.331 43.478 14.81 1.73 43.89 3.53
130 131 4.354387 TGAATTACCAAAACCACCTAGGGA 59.646 41.667 14.81 0.00 43.89 4.20
131 132 5.015817 TGAATTACCAAAACCACCTAGGGAT 59.984 40.000 14.81 0.00 43.89 3.85
132 133 6.217900 TGAATTACCAAAACCACCTAGGGATA 59.782 38.462 14.81 0.00 43.89 2.59
133 134 5.703730 TTACCAAAACCACCTAGGGATAG 57.296 43.478 14.81 0.69 43.89 2.08
134 135 3.538387 ACCAAAACCACCTAGGGATAGT 58.462 45.455 14.81 1.38 43.89 2.12
135 136 3.920841 ACCAAAACCACCTAGGGATAGTT 59.079 43.478 14.81 7.87 43.89 2.24
136 137 4.263771 ACCAAAACCACCTAGGGATAGTTG 60.264 45.833 14.81 11.15 43.89 3.16
137 138 3.646736 AAACCACCTAGGGATAGTTGC 57.353 47.619 14.81 0.00 43.89 4.17
138 139 2.263895 ACCACCTAGGGATAGTTGCA 57.736 50.000 14.81 0.00 43.89 4.08
139 140 1.838077 ACCACCTAGGGATAGTTGCAC 59.162 52.381 14.81 0.00 43.89 4.57
140 141 2.119495 CCACCTAGGGATAGTTGCACT 58.881 52.381 14.81 0.00 0.00 4.40
141 142 2.505819 CCACCTAGGGATAGTTGCACTT 59.494 50.000 14.81 0.00 0.00 3.16
142 143 3.054361 CCACCTAGGGATAGTTGCACTTT 60.054 47.826 14.81 0.00 0.00 2.66
143 144 4.192317 CACCTAGGGATAGTTGCACTTTC 58.808 47.826 14.81 0.00 0.00 2.62
144 145 3.844211 ACCTAGGGATAGTTGCACTTTCA 59.156 43.478 14.81 0.00 29.36 2.69
145 146 4.288626 ACCTAGGGATAGTTGCACTTTCAA 59.711 41.667 14.81 0.00 29.36 2.69
146 147 4.636206 CCTAGGGATAGTTGCACTTTCAAC 59.364 45.833 0.00 0.00 44.88 3.18
162 163 8.417176 GCACTTTCAACTTGTTAATGATTTACG 58.583 33.333 0.00 0.00 0.00 3.18
190 191 9.722184 AAAACTATAGTAAAGACACTCTTTCCC 57.278 33.333 5.65 0.00 42.60 3.97
210 211 1.458398 CTCTCTCTCTCAAGGCGACA 58.542 55.000 0.00 0.00 0.00 4.35
268 270 2.998949 GTGGATTCGCCTCCCCTT 59.001 61.111 1.25 0.00 37.63 3.95
320 324 2.861462 GAGAATCCTGGTGTCTCGAG 57.139 55.000 5.93 5.93 0.00 4.04
398 402 0.164647 CGGCGCTTCTTCTTTGAGTG 59.835 55.000 7.64 0.00 0.00 3.51
422 426 1.921869 TTCCGGGCTTCAATCCTCCC 61.922 60.000 0.00 0.00 35.42 4.30
426 430 0.041090 GGGCTTCAATCCTCCCCAAA 59.959 55.000 0.00 0.00 35.75 3.28
565 572 8.115490 AGTTCTTCAAATCGATTCAAGGATTT 57.885 30.769 21.22 9.45 42.05 2.17
566 573 8.579863 AGTTCTTCAAATCGATTCAAGGATTTT 58.420 29.630 21.22 7.75 40.01 1.82
577 584 3.869065 TCAAGGATTTTAAGGCGACGAT 58.131 40.909 0.00 0.00 0.00 3.73
588 595 2.813474 CGACGATTGCGGCTCCAA 60.813 61.111 0.00 0.00 45.51 3.53
638 646 2.166829 AGACTTCTCAGCTGTCATCGT 58.833 47.619 14.67 5.91 33.56 3.73
713 747 1.060553 CAATGATCGTTCGGTGGTTCG 59.939 52.381 0.00 0.00 0.00 3.95
868 906 5.336055 CCGGCAGAATTCAGTATAGACCTAG 60.336 48.000 8.44 0.00 0.00 3.02
879 917 1.390565 TAGACCTAGGAGCTCGCAAC 58.609 55.000 17.98 0.00 0.00 4.17
880 918 0.612174 AGACCTAGGAGCTCGCAACA 60.612 55.000 17.98 0.00 0.00 3.33
881 919 0.461961 GACCTAGGAGCTCGCAACAT 59.538 55.000 17.98 0.00 0.00 2.71
882 920 1.681793 GACCTAGGAGCTCGCAACATA 59.318 52.381 17.98 0.00 0.00 2.29
909 947 7.703058 ACGAATTAAAGGTCCATTCAGAATT 57.297 32.000 0.00 0.00 0.00 2.17
910 948 8.801882 ACGAATTAAAGGTCCATTCAGAATTA 57.198 30.769 0.00 0.00 0.00 1.40
911 949 8.893727 ACGAATTAAAGGTCCATTCAGAATTAG 58.106 33.333 0.00 0.00 0.00 1.73
912 950 8.893727 CGAATTAAAGGTCCATTCAGAATTAGT 58.106 33.333 0.00 0.00 0.00 2.24
943 1011 4.955811 AGATTTCACATATGCCTACGGA 57.044 40.909 1.58 0.00 0.00 4.69
1392 1461 4.367023 CGCGGGTTCGAGTCCCAA 62.367 66.667 21.94 0.00 44.81 4.12
1403 1472 1.557651 GAGTCCCAAGAATCGTACGC 58.442 55.000 11.24 0.00 0.00 4.42
1418 1487 2.290916 CGTACGCACATCTCTGGACTAT 59.709 50.000 0.52 0.00 0.00 2.12
1425 1494 5.403766 CGCACATCTCTGGACTATCATTTAC 59.596 44.000 0.00 0.00 0.00 2.01
1720 1789 1.281577 TGTATGTGCATTGGAGCAGGA 59.718 47.619 0.00 0.00 46.69 3.86
1822 1906 2.279741 GCGATTGCTGGTATTCTGTCA 58.720 47.619 0.00 0.00 38.39 3.58
2067 2151 2.970640 GGAGTTCCCGGGATGTATACTT 59.029 50.000 27.48 8.87 0.00 2.24
2071 2155 4.283722 AGTTCCCGGGATGTATACTTGATC 59.716 45.833 27.48 0.00 0.00 2.92
2155 2239 6.586844 GCGTACCATAGCTTTATAGAAGAAGG 59.413 42.308 0.00 0.00 0.00 3.46
2198 2282 1.202568 CACTCGCTGCGAACAACAG 59.797 57.895 25.86 15.01 34.74 3.16
2218 2303 2.823747 AGACGTAGCATAACTCCACACA 59.176 45.455 0.00 0.00 0.00 3.72
2356 2444 1.846439 TCCCTCCAAGCTTCCCTTATG 59.154 52.381 0.00 0.00 31.00 1.90
2361 2449 2.304761 TCCAAGCTTCCCTTATGAACGT 59.695 45.455 0.00 0.00 31.00 3.99
2750 3077 3.541632 AGATTTTCATCCGTAATGCCGT 58.458 40.909 0.00 0.00 35.17 5.68
2860 3194 1.539124 GTGGTCCTCTCCCACCCTT 60.539 63.158 0.00 0.00 45.43 3.95
2947 3283 1.814772 CGTGCAAGGGCCAAATCCAA 61.815 55.000 6.18 0.00 40.13 3.53
3253 3624 3.411351 CGCCGTGAAAGTCCACCG 61.411 66.667 0.00 0.00 33.67 4.94
3490 3873 3.691118 TGCTAGCATGAATGACAAAGTCC 59.309 43.478 14.93 0.00 0.00 3.85
3657 4311 3.367395 GGCTACTTGCTGAATTTCCAACC 60.367 47.826 0.00 0.00 42.39 3.77
3708 4362 4.500499 AGAGATGGAAATTGGGAGTGAG 57.500 45.455 0.00 0.00 0.00 3.51
3819 4473 3.686726 CAGTTTCCTGCACTACTTCCATC 59.313 47.826 0.00 0.00 0.00 3.51
3890 4544 9.438163 AAATTGTGATCCTATAAATTCATGGGT 57.562 29.630 0.00 0.00 0.00 4.51
4102 4757 6.860023 GCTGCATATGTGATCTGGTTATTTTC 59.140 38.462 4.29 0.00 0.00 2.29
4866 5521 3.232213 TGCTCGATCTTACTTCACACC 57.768 47.619 0.00 0.00 0.00 4.16
4867 5522 2.560981 TGCTCGATCTTACTTCACACCA 59.439 45.455 0.00 0.00 0.00 4.17
4872 5527 6.465439 TCGATCTTACTTCACACCATGTAT 57.535 37.500 0.00 0.00 0.00 2.29
5230 5885 6.243811 TGTGTTCGGTTGTATGATAAAACC 57.756 37.500 13.50 13.50 40.02 3.27
5233 5888 5.413213 TGTTCGGTTGTATGATAAAACCAGG 59.587 40.000 21.24 8.71 42.93 4.45
5316 5971 5.630415 TCCCTCAGGAAATACAACATAGG 57.370 43.478 0.00 0.00 40.08 2.57
5320 5975 6.464465 CCCTCAGGAAATACAACATAGGTAGG 60.464 46.154 0.00 0.00 33.47 3.18
5667 6328 3.937706 CAGGGCAAGTAGTCATTCAGAAG 59.062 47.826 0.00 0.00 0.00 2.85
5739 6407 6.862209 TGATTAGAACATGGCCATACAAAAC 58.138 36.000 20.30 8.12 0.00 2.43
5804 6476 9.988350 ATAAAAATTCTTGACATGTCGACATAC 57.012 29.630 29.52 24.28 34.26 2.39
5805 6477 7.672983 AAAATTCTTGACATGTCGACATACT 57.327 32.000 29.52 17.90 34.26 2.12
5825 6497 4.770795 ACTGTATTAGGCAAGCTACTTGG 58.229 43.478 9.23 0.00 41.31 3.61
5829 6501 3.334583 TTAGGCAAGCTACTTGGTGAG 57.665 47.619 9.23 0.00 41.31 3.51
5830 6502 0.326264 AGGCAAGCTACTTGGTGAGG 59.674 55.000 9.23 0.00 41.31 3.86
5831 6503 0.324943 GGCAAGCTACTTGGTGAGGA 59.675 55.000 9.23 0.00 41.31 3.71
5832 6504 1.677217 GGCAAGCTACTTGGTGAGGAG 60.677 57.143 9.23 0.00 41.31 3.69
5869 6542 1.066573 CGGCCAGCATAGAATCCCTAG 60.067 57.143 2.24 0.00 0.00 3.02
6018 6691 2.403037 GGTTTTAGTGACGTCGAAGTCG 59.597 50.000 23.32 9.51 43.70 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.265599 TGAAAGTGGATCCCTCAAAATACTA 57.734 36.000 9.90 0.00 0.00 1.82
3 4 6.730447 TGATGAAAGTGGATCCCTCAAAATA 58.270 36.000 9.90 0.00 0.00 1.40
6 7 4.656100 TGATGAAAGTGGATCCCTCAAA 57.344 40.909 9.90 0.00 0.00 2.69
7 8 4.476113 AGATGATGAAAGTGGATCCCTCAA 59.524 41.667 9.90 0.00 0.00 3.02
8 9 4.042884 AGATGATGAAAGTGGATCCCTCA 58.957 43.478 9.90 7.31 0.00 3.86
9 10 4.703379 AGATGATGAAAGTGGATCCCTC 57.297 45.455 9.90 2.36 0.00 4.30
10 11 5.610132 ACATAGATGATGAAAGTGGATCCCT 59.390 40.000 9.90 2.84 39.06 4.20
11 12 5.874093 ACATAGATGATGAAAGTGGATCCC 58.126 41.667 9.90 0.11 39.06 3.85
12 13 6.528321 TGACATAGATGATGAAAGTGGATCC 58.472 40.000 4.20 4.20 39.06 3.36
13 14 7.361031 GCATGACATAGATGATGAAAGTGGATC 60.361 40.741 0.00 0.00 39.06 3.36
14 15 6.430308 GCATGACATAGATGATGAAAGTGGAT 59.570 38.462 0.00 0.00 39.06 3.41
15 16 5.761726 GCATGACATAGATGATGAAAGTGGA 59.238 40.000 0.00 0.00 39.06 4.02
16 17 5.048921 GGCATGACATAGATGATGAAAGTGG 60.049 44.000 0.00 0.00 39.06 4.00
17 18 5.529800 TGGCATGACATAGATGATGAAAGTG 59.470 40.000 0.00 0.00 39.06 3.16
18 19 5.687780 TGGCATGACATAGATGATGAAAGT 58.312 37.500 0.00 0.00 39.06 2.66
19 20 6.819397 ATGGCATGACATAGATGATGAAAG 57.181 37.500 13.88 0.00 39.06 2.62
20 21 6.773685 TGAATGGCATGACATAGATGATGAAA 59.226 34.615 16.16 0.00 39.06 2.69
21 22 6.300703 TGAATGGCATGACATAGATGATGAA 58.699 36.000 16.16 0.00 39.06 2.57
22 23 5.871834 TGAATGGCATGACATAGATGATGA 58.128 37.500 16.16 0.00 39.06 2.92
23 24 6.759497 ATGAATGGCATGACATAGATGATG 57.241 37.500 16.16 0.00 37.42 3.07
24 25 6.946009 TCAATGAATGGCATGACATAGATGAT 59.054 34.615 16.16 0.00 37.28 2.45
25 26 6.300703 TCAATGAATGGCATGACATAGATGA 58.699 36.000 16.16 13.92 37.28 2.92
26 27 6.569179 TCAATGAATGGCATGACATAGATG 57.431 37.500 16.16 11.81 37.28 2.90
27 28 5.183331 GCTCAATGAATGGCATGACATAGAT 59.817 40.000 16.16 6.94 37.28 1.98
28 29 4.517832 GCTCAATGAATGGCATGACATAGA 59.482 41.667 16.16 4.50 37.28 1.98
29 30 4.519350 AGCTCAATGAATGGCATGACATAG 59.481 41.667 16.16 8.49 37.28 2.23
30 31 4.466827 AGCTCAATGAATGGCATGACATA 58.533 39.130 16.16 0.00 37.28 2.29
31 32 3.296854 AGCTCAATGAATGGCATGACAT 58.703 40.909 8.71 8.71 37.28 3.06
32 33 2.730382 AGCTCAATGAATGGCATGACA 58.270 42.857 2.18 2.18 37.28 3.58
33 34 3.795623 AAGCTCAATGAATGGCATGAC 57.204 42.857 0.00 0.00 37.28 3.06
34 35 4.464951 AGAAAAGCTCAATGAATGGCATGA 59.535 37.500 0.00 0.00 37.28 3.07
35 36 4.566759 CAGAAAAGCTCAATGAATGGCATG 59.433 41.667 0.00 0.00 37.28 4.06
36 37 4.464951 TCAGAAAAGCTCAATGAATGGCAT 59.535 37.500 0.00 0.00 39.43 4.40
37 38 3.827876 TCAGAAAAGCTCAATGAATGGCA 59.172 39.130 0.00 0.00 0.00 4.92
38 39 4.445452 TCAGAAAAGCTCAATGAATGGC 57.555 40.909 0.00 0.00 0.00 4.40
39 40 8.991243 TTATTTCAGAAAAGCTCAATGAATGG 57.009 30.769 0.00 0.00 30.56 3.16
47 48 8.950210 CCAAGACTATTATTTCAGAAAAGCTCA 58.050 33.333 0.00 0.00 0.00 4.26
48 49 9.167311 TCCAAGACTATTATTTCAGAAAAGCTC 57.833 33.333 0.00 0.00 0.00 4.09
49 50 9.520515 TTCCAAGACTATTATTTCAGAAAAGCT 57.479 29.630 0.00 0.00 0.00 3.74
78 79 7.173907 ACAACATATACCTCATTGAGCTAATGC 59.826 37.037 8.23 0.00 44.69 3.56
79 80 8.613060 ACAACATATACCTCATTGAGCTAATG 57.387 34.615 8.23 10.41 46.09 1.90
82 83 9.710900 CATAACAACATATACCTCATTGAGCTA 57.289 33.333 8.23 0.00 0.00 3.32
83 84 8.432013 TCATAACAACATATACCTCATTGAGCT 58.568 33.333 8.23 0.00 0.00 4.09
84 85 8.607441 TCATAACAACATATACCTCATTGAGC 57.393 34.615 8.23 0.00 0.00 4.26
97 98 9.915629 GTGGTTTTGGTAATTCATAACAACATA 57.084 29.630 4.25 0.00 40.88 2.29
98 99 7.875554 GGTGGTTTTGGTAATTCATAACAACAT 59.124 33.333 8.97 0.00 40.88 2.71
99 100 7.070074 AGGTGGTTTTGGTAATTCATAACAACA 59.930 33.333 8.97 0.00 40.88 3.33
100 101 7.438564 AGGTGGTTTTGGTAATTCATAACAAC 58.561 34.615 0.00 0.00 40.88 3.32
101 102 7.604657 AGGTGGTTTTGGTAATTCATAACAA 57.395 32.000 0.00 0.00 39.44 2.83
102 103 7.394923 CCTAGGTGGTTTTGGTAATTCATAACA 59.605 37.037 0.00 0.00 32.69 2.41
103 104 7.147966 CCCTAGGTGGTTTTGGTAATTCATAAC 60.148 40.741 8.29 0.00 0.00 1.89
104 105 6.893005 CCCTAGGTGGTTTTGGTAATTCATAA 59.107 38.462 8.29 0.00 0.00 1.90
105 106 6.217900 TCCCTAGGTGGTTTTGGTAATTCATA 59.782 38.462 8.29 0.00 0.00 2.15
106 107 5.015817 TCCCTAGGTGGTTTTGGTAATTCAT 59.984 40.000 8.29 0.00 0.00 2.57
107 108 4.354387 TCCCTAGGTGGTTTTGGTAATTCA 59.646 41.667 8.29 0.00 0.00 2.57
108 109 4.925836 TCCCTAGGTGGTTTTGGTAATTC 58.074 43.478 8.29 0.00 0.00 2.17
109 110 5.546035 ATCCCTAGGTGGTTTTGGTAATT 57.454 39.130 8.29 0.00 0.00 1.40
110 111 5.734634 ACTATCCCTAGGTGGTTTTGGTAAT 59.265 40.000 8.29 0.00 0.00 1.89
111 112 5.102967 ACTATCCCTAGGTGGTTTTGGTAA 58.897 41.667 8.29 0.00 0.00 2.85
112 113 4.702196 ACTATCCCTAGGTGGTTTTGGTA 58.298 43.478 8.29 0.00 0.00 3.25
113 114 3.538387 ACTATCCCTAGGTGGTTTTGGT 58.462 45.455 8.29 0.00 0.00 3.67
114 115 4.270008 CAACTATCCCTAGGTGGTTTTGG 58.730 47.826 8.29 0.00 38.75 3.28
115 116 3.694566 GCAACTATCCCTAGGTGGTTTTG 59.305 47.826 8.29 6.66 42.07 2.44
116 117 3.332485 TGCAACTATCCCTAGGTGGTTTT 59.668 43.478 8.29 0.00 42.07 2.43
117 118 2.916934 TGCAACTATCCCTAGGTGGTTT 59.083 45.455 8.29 0.00 42.07 3.27
118 119 2.238898 GTGCAACTATCCCTAGGTGGTT 59.761 50.000 8.29 1.46 42.07 3.67
119 120 1.838077 GTGCAACTATCCCTAGGTGGT 59.162 52.381 8.29 0.00 42.07 4.16
120 121 2.622064 GTGCAACTATCCCTAGGTGG 57.378 55.000 8.29 0.00 42.07 4.61
133 134 7.698836 ATCATTAACAAGTTGAAAGTGCAAC 57.301 32.000 10.54 0.00 46.47 4.17
134 135 8.715191 AAATCATTAACAAGTTGAAAGTGCAA 57.285 26.923 10.54 0.00 0.00 4.08
135 136 9.243637 GTAAATCATTAACAAGTTGAAAGTGCA 57.756 29.630 10.54 0.00 0.00 4.57
136 137 8.417176 CGTAAATCATTAACAAGTTGAAAGTGC 58.583 33.333 10.54 0.00 0.00 4.40
137 138 9.445786 ACGTAAATCATTAACAAGTTGAAAGTG 57.554 29.630 10.54 4.34 0.00 3.16
182 183 3.380471 TGAGAGAGAGAGGGGAAAGAG 57.620 52.381 0.00 0.00 0.00 2.85
190 191 0.738389 GTCGCCTTGAGAGAGAGAGG 59.262 60.000 0.00 0.00 0.00 3.69
210 211 2.282900 AGGGAAGGAAGGCTTTCTCAT 58.717 47.619 8.88 0.00 33.30 2.90
291 293 3.561241 GGATTCTCCTCCCCGCCC 61.561 72.222 0.00 0.00 32.53 6.13
320 324 3.608796 CCTACCTATCTACTAGCGGGAC 58.391 54.545 0.00 0.00 0.00 4.46
363 367 1.603236 GCCGCCATCCATCCAAACAA 61.603 55.000 0.00 0.00 0.00 2.83
398 402 1.657822 GATTGAAGCCCGGAAGACTC 58.342 55.000 0.73 0.00 0.00 3.36
422 426 1.127213 CGTACCAACGGACGAATTTGG 59.873 52.381 10.00 10.00 45.50 3.28
565 572 2.457778 GCCGCAATCGTCGCCTTAA 61.458 57.895 0.00 0.00 0.00 1.85
566 573 2.888534 GCCGCAATCGTCGCCTTA 60.889 61.111 0.00 0.00 0.00 2.69
577 584 4.269523 AGTGCCTTGGAGCCGCAA 62.270 61.111 0.00 0.00 33.57 4.85
588 595 1.853250 GCCCCTAAAGACCAGTGCCT 61.853 60.000 0.00 0.00 0.00 4.75
638 646 2.347490 GAGCCGGCTTGACCTTGA 59.653 61.111 33.34 0.00 35.61 3.02
698 732 1.373748 CCACGAACCACCGAACGAT 60.374 57.895 0.00 0.00 0.00 3.73
738 773 4.332819 CGGAAGTATAAAGCACCTCAAAGG 59.667 45.833 0.00 0.00 42.49 3.11
739 774 4.332819 CCGGAAGTATAAAGCACCTCAAAG 59.667 45.833 0.00 0.00 0.00 2.77
868 906 2.739292 TCGTATTATGTTGCGAGCTCC 58.261 47.619 8.47 1.40 0.00 4.70
881 919 9.893634 TTCTGAATGGACCTTTAATTCGTATTA 57.106 29.630 0.00 0.00 33.83 0.98
882 920 8.801882 TTCTGAATGGACCTTTAATTCGTATT 57.198 30.769 0.00 0.00 33.83 1.89
943 1011 4.649218 ACTTGATTAGTTGCTGGTGGTTTT 59.351 37.500 0.00 0.00 31.29 2.43
1093 1162 2.695666 CAGCGAAGGAGATAAGGAGGAA 59.304 50.000 0.00 0.00 0.00 3.36
1094 1163 2.311463 CAGCGAAGGAGATAAGGAGGA 58.689 52.381 0.00 0.00 0.00 3.71
1392 1461 2.223595 CCAGAGATGTGCGTACGATTCT 60.224 50.000 21.65 13.78 0.00 2.40
1403 1472 8.633561 TGTAGTAAATGATAGTCCAGAGATGTG 58.366 37.037 0.00 0.00 0.00 3.21
1418 1487 3.266636 CACCACGCCATGTAGTAAATGA 58.733 45.455 1.51 0.00 0.00 2.57
1549 1618 0.607112 TACGCCCACACGAACCATAA 59.393 50.000 0.00 0.00 36.70 1.90
1720 1789 1.001181 GTGGGCAATGCAGTCAAATGT 59.999 47.619 7.79 0.00 0.00 2.71
1822 1906 1.065551 GCAGCAACAAGTTCGTTCCTT 59.934 47.619 0.00 0.00 0.00 3.36
1923 2007 1.632589 AAATGCAGTTTCACCTCCCC 58.367 50.000 0.00 0.00 0.00 4.81
2058 2142 7.092174 TGGGTTAAGTTGGGATCAAGTATACAT 60.092 37.037 5.50 0.00 35.64 2.29
2065 2149 3.193479 GCTTGGGTTAAGTTGGGATCAAG 59.807 47.826 0.00 0.00 38.70 3.02
2067 2151 2.802719 GCTTGGGTTAAGTTGGGATCA 58.197 47.619 0.00 0.00 38.70 2.92
2071 2155 0.879090 GTCGCTTGGGTTAAGTTGGG 59.121 55.000 0.00 0.00 38.70 4.12
2155 2239 5.517322 AGTGGTCTCGTACTTGATATTCC 57.483 43.478 0.00 0.00 0.00 3.01
2198 2282 2.921754 GTGTGTGGAGTTATGCTACGTC 59.078 50.000 0.00 0.00 0.00 4.34
2218 2303 1.889530 GCTGTCCTTGGACTAGCCGT 61.890 60.000 22.10 0.00 40.66 5.68
2356 2444 3.473625 CTTTATGGGGGATGGTACGTTC 58.526 50.000 0.00 0.00 0.00 3.95
2361 2449 1.914272 TGGCTTTATGGGGGATGGTA 58.086 50.000 0.00 0.00 0.00 3.25
2750 3077 2.997315 CGGAGGAGTGGAGTGGCA 60.997 66.667 0.00 0.00 0.00 4.92
2860 3194 2.036571 TCGCGTTCTCTCGGCAGTA 61.037 57.895 5.77 0.00 0.00 2.74
2947 3283 4.643387 GGTGAAGGCCGGCAGTGT 62.643 66.667 30.85 9.73 0.00 3.55
3819 4473 1.079503 GAGAGGCGCAGGTTAGTTTG 58.920 55.000 10.83 0.00 0.00 2.93
3948 4603 1.205417 CCGCTTCAGGCATTTTCCAAT 59.795 47.619 0.00 0.00 41.91 3.16
4102 4757 8.651588 CAGTATAGACTAGTTTGCTTGAACAAG 58.348 37.037 9.82 9.82 36.55 3.16
4359 5014 6.312426 CAGAAAGACTCATAAGTTTCAGCGAT 59.688 38.462 0.00 0.00 35.28 4.58
4360 5015 5.635280 CAGAAAGACTCATAAGTTTCAGCGA 59.365 40.000 0.00 0.00 35.28 4.93
4701 5356 2.231215 GCTGATCACGGCAGATAAGT 57.769 50.000 2.23 0.00 46.56 2.24
4866 5521 4.694509 GGAGGCTCTATTTGCAGATACATG 59.305 45.833 15.23 0.00 0.00 3.21
4867 5522 4.349048 TGGAGGCTCTATTTGCAGATACAT 59.651 41.667 15.23 0.00 0.00 2.29
4872 5527 3.264193 TCTTTGGAGGCTCTATTTGCAGA 59.736 43.478 15.23 4.06 0.00 4.26
5006 5661 3.725634 AGGTCCTTCTTGCTACCTACAT 58.274 45.455 0.00 0.00 40.57 2.29
5066 5721 6.483974 ACTCAACGTTACAATGGTACAATGAA 59.516 34.615 0.00 0.00 42.85 2.57
5085 5740 4.025979 CGTTACAGAAGGAACACACTCAAC 60.026 45.833 0.00 0.00 0.00 3.18
5230 5885 4.357142 CATAGCTTGCATTTTGCTACCTG 58.643 43.478 11.54 5.90 45.31 4.00
5316 5971 4.863491 TCGACAAGTAACAAGACACCTAC 58.137 43.478 0.00 0.00 0.00 3.18
5320 5975 4.357142 TGACTCGACAAGTAACAAGACAC 58.643 43.478 0.00 0.00 38.74 3.67
5462 6117 6.823182 AGCAATTTCTATGTAGCACATGTACA 59.177 34.615 0.00 0.00 39.53 2.90
5505 6160 6.201425 ACATTTGTTGCATGAAAACATCTCAC 59.799 34.615 13.28 0.00 37.38 3.51
5656 6317 5.516339 CACCAAACAAACACTTCTGAATGAC 59.484 40.000 0.00 0.00 0.00 3.06
5667 6328 0.179086 CAGGGCCACCAAACAAACAC 60.179 55.000 6.18 0.00 40.13 3.32
5804 6476 4.572389 CACCAAGTAGCTTGCCTAATACAG 59.428 45.833 0.00 0.00 39.85 2.74
5805 6477 4.224147 TCACCAAGTAGCTTGCCTAATACA 59.776 41.667 0.00 0.00 39.85 2.29
5825 6497 2.026729 CCTTTTCTTCCTCCCTCCTCAC 60.027 54.545 0.00 0.00 0.00 3.51
5829 6501 1.282447 GGACCTTTTCTTCCTCCCTCC 59.718 57.143 0.00 0.00 0.00 4.30
5830 6502 1.066071 CGGACCTTTTCTTCCTCCCTC 60.066 57.143 0.00 0.00 0.00 4.30
5831 6503 0.984995 CGGACCTTTTCTTCCTCCCT 59.015 55.000 0.00 0.00 0.00 4.20
5832 6504 0.035343 CCGGACCTTTTCTTCCTCCC 60.035 60.000 0.00 0.00 0.00 4.30
5869 6542 2.230660 ACCAAAGTAGCTGGTTTCTGC 58.769 47.619 0.00 0.00 45.13 4.26
5891 6564 5.590663 GGATATTCTTTCCAGTCAAAGGTCC 59.409 44.000 0.00 0.00 34.58 4.46
5998 6671 2.403037 CCGACTTCGACGTCACTAAAAC 59.597 50.000 20.44 0.00 43.02 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.