Multiple sequence alignment - TraesCS4B01G172600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G172600 chr4B 100.000 8659 0 0 1 8659 377677884 377686542 0.000000e+00 15991.0
1 TraesCS4B01G172600 chr4B 84.348 115 7 3 7123 7227 227004150 227004037 1.540000e-17 102.0
2 TraesCS4B01G172600 chr4B 85.882 85 10 2 7143 7226 130222430 130222347 1.200000e-13 89.8
3 TraesCS4B01G172600 chr4D 96.284 3418 87 20 746 4135 302681150 302684555 0.000000e+00 5572.0
4 TraesCS4B01G172600 chr4D 98.295 2991 38 6 4146 7128 302684947 302687932 0.000000e+00 5228.0
5 TraesCS4B01G172600 chr4D 94.193 706 21 4 7831 8526 302688642 302689337 0.000000e+00 1059.0
6 TraesCS4B01G172600 chr4D 94.127 630 30 5 1 626 302654338 302654964 0.000000e+00 952.0
7 TraesCS4B01G172600 chr4D 93.911 542 17 9 7224 7761 302687930 302688459 0.000000e+00 804.0
8 TraesCS4B01G172600 chr4D 97.368 114 3 0 640 753 302654950 302655063 2.470000e-45 195.0
9 TraesCS4B01G172600 chr4A 94.614 3435 117 34 747 4146 176874982 176871581 0.000000e+00 5256.0
10 TraesCS4B01G172600 chr4A 97.755 2717 56 3 4151 6865 176871208 176868495 0.000000e+00 4674.0
11 TraesCS4B01G172600 chr4A 90.173 865 45 19 6921 7761 176868517 176867669 0.000000e+00 1090.0
12 TraesCS4B01G172600 chr4A 91.994 712 36 7 7831 8527 176867472 176866767 0.000000e+00 979.0
13 TraesCS4B01G172600 chr4A 88.612 281 27 3 305 582 176876271 176875993 3.870000e-88 337.0
14 TraesCS4B01G172600 chr4A 92.929 198 14 0 108 305 176881666 176881469 1.100000e-73 289.0
15 TraesCS4B01G172600 chr4A 96.364 110 4 0 1 110 176881904 176881795 1.920000e-41 182.0
16 TraesCS4B01G172600 chr4A 95.098 102 5 0 8558 8659 176866683 176866582 2.500000e-35 161.0
17 TraesCS4B01G172600 chr4A 94.231 104 6 0 640 743 176875148 176875045 9.000000e-35 159.0
18 TraesCS4B01G172600 chr2B 88.571 105 8 4 7123 7225 683033795 683033897 3.280000e-24 124.0
19 TraesCS4B01G172600 chr2B 85.149 101 12 3 7126 7223 683383737 683383637 5.530000e-17 100.0
20 TraesCS4B01G172600 chr5B 86.325 117 6 1 7120 7226 172134445 172134561 1.530000e-22 119.0
21 TraesCS4B01G172600 chr1B 88.119 101 8 2 7126 7223 399131363 399131264 5.490000e-22 117.0
22 TraesCS4B01G172600 chr5D 87.037 108 4 1 7124 7221 408778990 408779097 7.100000e-21 113.0
23 TraesCS4B01G172600 chr1A 85.577 104 13 2 7127 7230 574351242 574351343 3.310000e-19 108.0
24 TraesCS4B01G172600 chr2A 85.437 103 12 1 7126 7225 603681966 603681864 4.280000e-18 104.0
25 TraesCS4B01G172600 chr2A 85.000 100 12 2 7127 7223 603681866 603681965 1.990000e-16 99.0
26 TraesCS4B01G172600 chr6A 83.471 121 8 8 7125 7235 52024195 52024077 1.540000e-17 102.0
27 TraesCS4B01G172600 chr3B 82.569 109 7 3 7111 7207 113920096 113920204 1.550000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G172600 chr4B 377677884 377686542 8658 False 15991.00 15991 100.00000 1 8659 1 chr4B.!!$F1 8658
1 TraesCS4B01G172600 chr4D 302681150 302689337 8187 False 3165.75 5572 95.67075 746 8526 4 chr4D.!!$F2 7780
2 TraesCS4B01G172600 chr4D 302654338 302655063 725 False 573.50 952 95.74750 1 753 2 chr4D.!!$F1 752
3 TraesCS4B01G172600 chr4A 176866582 176876271 9689 True 1808.00 5256 93.21100 305 8659 7 chr4A.!!$R1 8354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 1.209019 GCATGACATCCAGACTGTCCT 59.791 52.381 3.76 0.00 41.87 3.85 F
383 386 1.247567 CAAACCCCACGCATCTTTCT 58.752 50.000 0.00 0.00 0.00 2.52 F
2106 2996 0.392706 AGGTGATGCACTCGTTCACA 59.607 50.000 16.85 0.00 34.40 3.58 F
2168 3058 2.168106 TGCATTTGGCTGAAAACTGTGT 59.832 40.909 0.00 0.00 45.15 3.72 F
3318 4217 3.918258 TCTGTCAAAGACGTGAAAACG 57.082 42.857 0.00 0.00 34.95 3.60 F
3564 4464 0.374758 CGCGTCAGTGCAAATGCTAT 59.625 50.000 6.97 0.00 42.66 2.97 F
5310 6608 0.318762 GACCAGCAAAGGAGACGAGT 59.681 55.000 0.00 0.00 0.00 4.18 F
5324 6622 2.490115 AGACGAGTACCAAGCTCTTGAG 59.510 50.000 10.94 4.34 42.93 3.02 F
6894 8194 0.107410 ACCCGCTGTCAGAAACAACA 60.107 50.000 3.32 0.00 37.45 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 2350 1.065401 GCATTGAATCCGAAATGGCGA 59.935 47.619 0.00 0.0 37.80 5.54 R
2283 3181 1.135046 CAGATGCTACTGATTCGGCG 58.865 55.000 0.00 0.0 39.94 6.46 R
3452 4352 1.142667 TGTCAGACCAAATGCCTCACA 59.857 47.619 0.00 0.0 0.00 3.58 R
3453 4353 1.896220 TGTCAGACCAAATGCCTCAC 58.104 50.000 0.00 0.0 0.00 3.51 R
4653 5951 1.045350 CGGATCTCCTTGGAGGCTGA 61.045 60.000 15.81 0.0 34.61 4.26 R
5324 6622 1.001393 TTCTGCCCAACGGATTCCC 60.001 57.895 0.00 0.0 32.28 3.97 R
6231 7529 1.228245 TTCAACCCAGGCAGCTGAC 60.228 57.895 20.43 17.0 0.00 3.51 R
7135 8445 1.274167 AGCGACGAGTAATTTGGGACA 59.726 47.619 0.00 0.0 0.00 4.02 R
8147 9622 0.460311 ATCTTACTGAACCCGCCTCG 59.540 55.000 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 8.090214 CAGGATCTGATCTCTTAAATTCCTCTC 58.910 40.741 16.61 0.00 32.44 3.20
104 105 5.542848 AAATTCCTCTCCCATCCTTTCTT 57.457 39.130 0.00 0.00 0.00 2.52
111 112 9.460413 TTCCTCTCCCATCCTTTCTTATATTTA 57.540 33.333 0.00 0.00 0.00 1.40
154 155 1.209019 GCATGACATCCAGACTGTCCT 59.791 52.381 3.76 0.00 41.87 3.85
184 185 9.520204 CAACAACAGGTTCATTCCATATATTTC 57.480 33.333 0.00 0.00 37.72 2.17
194 195 8.287904 TCATTCCATATATTTCCCCACTAAGT 57.712 34.615 0.00 0.00 0.00 2.24
197 198 7.699709 TCCATATATTTCCCCACTAAGTTCA 57.300 36.000 0.00 0.00 0.00 3.18
256 259 4.832823 ACCCTTTCACAAAATCCAACTAGG 59.167 41.667 0.00 0.00 39.47 3.02
267 270 9.014297 ACAAAATCCAACTAGGTTCAAATCTAG 57.986 33.333 8.23 8.23 43.76 2.43
272 275 5.189934 CCAACTAGGTTCAAATCTAGAGGGT 59.810 44.000 15.30 0.00 41.30 4.34
326 329 5.489335 CATAACGTCCATTACACGAACATG 58.511 41.667 0.00 0.00 39.75 3.21
370 373 9.169592 ACAATGTAGTATTATACACACAAACCC 57.830 33.333 11.81 0.00 38.43 4.11
383 386 1.247567 CAAACCCCACGCATCTTTCT 58.752 50.000 0.00 0.00 0.00 2.52
398 403 5.620654 GCATCTTTCTGCTGCTTTCAATACA 60.621 40.000 0.00 0.00 39.12 2.29
414 419 6.735678 TCAATACAATGCTATCACAAACGT 57.264 33.333 0.00 0.00 0.00 3.99
446 451 2.034221 GGGTGTCCTTGTGGCTCC 59.966 66.667 0.00 0.00 0.00 4.70
467 473 3.242413 CCGACCATAAATCACGAGCAAAG 60.242 47.826 0.00 0.00 0.00 2.77
515 521 6.319658 CCAATGATGACTTGCAATTACTAGGT 59.680 38.462 0.00 0.00 0.00 3.08
552 558 6.524490 GTGTTTGAATTTGTTGAACACACAG 58.476 36.000 0.00 0.00 45.62 3.66
571 577 6.537301 CACACAGTTTACCTACAAGTTCAAGA 59.463 38.462 0.00 0.00 0.00 3.02
582 588 8.305317 ACCTACAAGTTCAAGATTCTGTACTAC 58.695 37.037 0.00 0.00 0.00 2.73
612 1433 9.915629 TTTTTCTTCTTTTATATTGCCGCTTAA 57.084 25.926 0.00 0.00 0.00 1.85
613 1434 9.567848 TTTTCTTCTTTTATATTGCCGCTTAAG 57.432 29.630 0.00 0.00 0.00 1.85
614 1435 7.859325 TCTTCTTTTATATTGCCGCTTAAGT 57.141 32.000 4.02 0.00 0.00 2.24
615 1436 8.276252 TCTTCTTTTATATTGCCGCTTAAGTT 57.724 30.769 4.02 0.00 0.00 2.66
616 1437 8.736244 TCTTCTTTTATATTGCCGCTTAAGTTT 58.264 29.630 4.02 0.00 0.00 2.66
617 1438 9.997482 CTTCTTTTATATTGCCGCTTAAGTTTA 57.003 29.630 4.02 0.00 0.00 2.01
618 1439 9.997482 TTCTTTTATATTGCCGCTTAAGTTTAG 57.003 29.630 4.02 0.00 0.00 1.85
619 1440 9.169592 TCTTTTATATTGCCGCTTAAGTTTAGT 57.830 29.630 4.02 0.00 0.00 2.24
620 1441 9.783256 CTTTTATATTGCCGCTTAAGTTTAGTT 57.217 29.630 4.02 0.00 0.00 2.24
625 1446 7.625828 ATTGCCGCTTAAGTTTAGTTATTCT 57.374 32.000 4.02 0.00 0.00 2.40
626 1447 7.443259 TTGCCGCTTAAGTTTAGTTATTCTT 57.557 32.000 4.02 0.00 0.00 2.52
627 1448 7.443259 TGCCGCTTAAGTTTAGTTATTCTTT 57.557 32.000 4.02 0.00 0.00 2.52
628 1449 7.524065 TGCCGCTTAAGTTTAGTTATTCTTTC 58.476 34.615 4.02 0.00 0.00 2.62
629 1450 7.389607 TGCCGCTTAAGTTTAGTTATTCTTTCT 59.610 33.333 4.02 0.00 0.00 2.52
630 1451 7.903946 GCCGCTTAAGTTTAGTTATTCTTTCTC 59.096 37.037 4.02 0.00 0.00 2.87
631 1452 8.108782 CCGCTTAAGTTTAGTTATTCTTTCTCG 58.891 37.037 4.02 0.00 0.00 4.04
632 1453 7.631368 CGCTTAAGTTTAGTTATTCTTTCTCGC 59.369 37.037 4.02 0.00 0.00 5.03
633 1454 8.440833 GCTTAAGTTTAGTTATTCTTTCTCGCA 58.559 33.333 4.02 0.00 0.00 5.10
691 1512 7.391554 TGCTAATTACTCAACATTCTTCTTGCT 59.608 33.333 0.00 0.00 0.00 3.91
784 1664 2.635444 CACAAAAGCGGAGTACGTTTG 58.365 47.619 8.80 8.80 45.48 2.93
802 1682 4.445162 CGTTTGCTACCTATAATTCCCCCA 60.445 45.833 0.00 0.00 0.00 4.96
986 1866 2.625823 CCCGCATTCCGCAGTTGTT 61.626 57.895 0.00 0.00 42.60 2.83
989 1869 1.577328 CGCATTCCGCAGTTGTTCCT 61.577 55.000 0.00 0.00 42.60 3.36
1181 2062 1.446907 CATTCGTCTGCTCTGCCTTT 58.553 50.000 0.00 0.00 0.00 3.11
1182 2063 1.808945 CATTCGTCTGCTCTGCCTTTT 59.191 47.619 0.00 0.00 0.00 2.27
1224 2105 2.037527 GTCTCCTCGGACCTGGGT 59.962 66.667 0.00 0.00 0.00 4.51
1225 2106 2.053277 GTCTCCTCGGACCTGGGTC 61.053 68.421 11.03 11.03 43.87 4.46
1226 2107 2.239439 TCTCCTCGGACCTGGGTCT 61.239 63.158 17.82 0.00 44.04 3.85
1415 2299 1.452108 GTCTGCGAGGGATTTGGGG 60.452 63.158 0.00 0.00 0.00 4.96
1428 2312 1.731324 TTTGGGGTTTGGATCCGGGT 61.731 55.000 7.39 0.00 0.00 5.28
1455 2340 2.066262 GCGGTCTCAAACTTTCGATCA 58.934 47.619 0.00 0.00 0.00 2.92
1459 2344 4.376413 CGGTCTCAAACTTTCGATCACTTG 60.376 45.833 0.00 0.00 0.00 3.16
1465 2350 5.588648 TCAAACTTTCGATCACTTGGAAACT 59.411 36.000 0.00 0.00 0.00 2.66
1467 2352 3.741344 ACTTTCGATCACTTGGAAACTCG 59.259 43.478 0.00 0.00 0.00 4.18
1506 2391 2.071540 GTCCGGTGCTTAGTTTGGTAC 58.928 52.381 0.00 0.00 0.00 3.34
1631 2519 9.832445 TTAACTAAGGAAATTGAGGCATACTAG 57.168 33.333 0.00 0.00 0.00 2.57
1652 2540 3.386726 AGGCTCGTACCACATGCTATTTA 59.613 43.478 0.00 0.00 0.00 1.40
1777 2667 3.931907 TGCTCTATGCTTGGTTGGTAT 57.068 42.857 0.00 0.00 43.37 2.73
1806 2696 6.194796 TGCTGAAAAGTAACCTGCATATTC 57.805 37.500 0.00 0.00 31.46 1.75
1868 2758 5.121611 TGACATATTAGCGTTTGTGACCTTG 59.878 40.000 0.00 0.00 0.00 3.61
2072 2962 2.708216 TTCTGCAGTGTTCCAAGTGA 57.292 45.000 14.67 0.00 0.00 3.41
2093 2983 4.074970 GACATTGACCAAGAACAGGTGAT 58.925 43.478 0.00 0.00 40.09 3.06
2106 2996 0.392706 AGGTGATGCACTCGTTCACA 59.607 50.000 16.85 0.00 34.40 3.58
2145 3035 2.808543 AGTGTGCTTCAGATTTTCGTCC 59.191 45.455 0.00 0.00 0.00 4.79
2167 3057 2.798283 CTGCATTTGGCTGAAAACTGTG 59.202 45.455 0.00 0.00 43.53 3.66
2168 3058 2.168106 TGCATTTGGCTGAAAACTGTGT 59.832 40.909 0.00 0.00 45.15 3.72
2283 3181 4.732938 GCAATTGCTTGTAATGGAGAGAGC 60.733 45.833 23.21 0.00 38.21 4.09
2361 3259 4.375908 GCCAAAAATTTCCAATCACGTTCG 60.376 41.667 0.00 0.00 0.00 3.95
2389 3287 6.003950 AGTGGCTCTTTTAAGCTGTTATTGA 58.996 36.000 0.00 0.00 42.13 2.57
2390 3288 6.660949 AGTGGCTCTTTTAAGCTGTTATTGAT 59.339 34.615 0.00 0.00 42.13 2.57
2459 3357 4.569761 GGTCTTTCACCTTGACCTTTTC 57.430 45.455 0.00 0.00 44.84 2.29
2727 3625 8.972364 TTCTTATCTAGAGAAACAGCAGACGCT 61.972 40.741 0.81 0.00 41.28 5.07
2952 3851 7.549134 CACTTCACCATTTTAGTGCTATGAGTA 59.451 37.037 0.00 0.00 35.14 2.59
3112 4011 8.936864 CCTTGACTATTTAGTTGGTGACTTTAG 58.063 37.037 0.00 0.00 39.86 1.85
3113 4012 7.900782 TGACTATTTAGTTGGTGACTTTAGC 57.099 36.000 0.00 0.00 39.86 3.09
3118 4017 5.458041 TTAGTTGGTGACTTTAGCGTACT 57.542 39.130 0.00 0.00 39.86 2.73
3318 4217 3.918258 TCTGTCAAAGACGTGAAAACG 57.082 42.857 0.00 0.00 34.95 3.60
3376 4275 6.406692 AGCCTCACACGTGATTTATATAGT 57.593 37.500 25.01 0.00 39.13 2.12
3398 4297 5.269226 GTCAAATGCATTTTGGCAGACACA 61.269 41.667 21.95 0.00 46.88 3.72
3412 4311 5.709631 TGGCAGACACAATTTGCTCTAATTA 59.290 36.000 0.00 0.00 37.93 1.40
3552 4452 0.860203 CATTTCTGCATGCGCGTCAG 60.860 55.000 14.09 17.65 42.97 3.51
3562 4462 2.557805 CGCGTCAGTGCAAATGCT 59.442 55.556 6.97 0.00 42.66 3.79
3564 4464 0.374758 CGCGTCAGTGCAAATGCTAT 59.625 50.000 6.97 0.00 42.66 2.97
3565 4465 1.202065 CGCGTCAGTGCAAATGCTATT 60.202 47.619 6.97 0.00 42.66 1.73
3838 4753 9.677567 GCTCACATTTTAGTTCTCAAAATTACA 57.322 29.630 0.00 0.00 34.22 2.41
3984 4901 2.030185 TGAGTTACTTCGAGCACTGGAC 60.030 50.000 0.00 0.00 0.00 4.02
4331 5629 4.994217 TGCACTTGAAACTCGTGATATCAA 59.006 37.500 7.07 0.00 0.00 2.57
4653 5951 2.230508 CAGCTGCAATGGTGAAACAGAT 59.769 45.455 0.00 0.00 39.98 2.90
5310 6608 0.318762 GACCAGCAAAGGAGACGAGT 59.681 55.000 0.00 0.00 0.00 4.18
5324 6622 2.490115 AGACGAGTACCAAGCTCTTGAG 59.510 50.000 10.94 4.34 42.93 3.02
5753 7051 4.873259 GGAAGATAAGAAGACAAGGACAGC 59.127 45.833 0.00 0.00 0.00 4.40
5754 7052 5.482908 GAAGATAAGAAGACAAGGACAGCA 58.517 41.667 0.00 0.00 0.00 4.41
5755 7053 5.083533 AGATAAGAAGACAAGGACAGCAG 57.916 43.478 0.00 0.00 0.00 4.24
5815 7113 5.345202 GCATCAGAAGAAAAATCAAGTGCAG 59.655 40.000 0.00 0.00 0.00 4.41
6231 7529 3.559015 CGAGGACATGGACATCTCG 57.441 57.895 0.00 7.27 40.68 4.04
6651 7949 4.279671 AGCATCTTATCAGGTACTTCTCCG 59.720 45.833 0.00 0.00 34.60 4.63
6743 8043 4.006319 GTGCTTGAGCCTCAGTCTTTTAT 58.994 43.478 0.00 0.00 41.18 1.40
6804 8104 4.441744 CCGCAACGTAACATCGACAATATA 59.558 41.667 0.00 0.00 34.70 0.86
6894 8194 0.107410 ACCCGCTGTCAGAAACAACA 60.107 50.000 3.32 0.00 37.45 3.33
6927 8227 7.014134 TGGATATTTGTTGTGTTCAGTGTTCAT 59.986 33.333 0.00 0.00 0.00 2.57
6972 8272 7.953005 TTTCCTATGAATGAAATTGCAGGTA 57.047 32.000 0.00 0.00 36.07 3.08
6976 8276 8.217111 TCCTATGAATGAAATTGCAGGTATACA 58.783 33.333 5.01 0.00 36.07 2.29
6981 8281 8.530311 TGAATGAAATTGCAGGTATACATTGTT 58.470 29.630 5.01 0.00 36.07 2.83
6991 8291 9.407380 TGCAGGTATACATTGTTGAATCTAAAT 57.593 29.630 5.01 0.00 0.00 1.40
7096 8396 3.577415 ACCGTCAACTAAAGGCTAGTTCT 59.423 43.478 0.00 0.00 35.76 3.01
7135 8445 2.696526 TGGTCACTTGTACTCCCTCT 57.303 50.000 0.00 0.00 0.00 3.69
7138 8448 2.231721 GGTCACTTGTACTCCCTCTGTC 59.768 54.545 0.00 0.00 0.00 3.51
7140 8450 1.550976 CACTTGTACTCCCTCTGTCCC 59.449 57.143 0.00 0.00 0.00 4.46
7141 8451 1.149288 ACTTGTACTCCCTCTGTCCCA 59.851 52.381 0.00 0.00 0.00 4.37
7149 8459 3.519913 ACTCCCTCTGTCCCAAATTACTC 59.480 47.826 0.00 0.00 0.00 2.59
7154 8464 1.659098 CTGTCCCAAATTACTCGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
7155 8465 1.274167 TGTCCCAAATTACTCGTCGCT 59.726 47.619 0.00 0.00 0.00 4.93
7168 8478 3.186909 CTCGTCGCTGAAATGGATGTAA 58.813 45.455 0.00 0.00 0.00 2.41
7169 8479 3.591023 TCGTCGCTGAAATGGATGTAAA 58.409 40.909 0.00 0.00 0.00 2.01
7170 8480 3.997681 TCGTCGCTGAAATGGATGTAAAA 59.002 39.130 0.00 0.00 0.00 1.52
7171 8481 4.634004 TCGTCGCTGAAATGGATGTAAAAT 59.366 37.500 0.00 0.00 0.00 1.82
7172 8482 5.813157 TCGTCGCTGAAATGGATGTAAAATA 59.187 36.000 0.00 0.00 0.00 1.40
7173 8483 5.901884 CGTCGCTGAAATGGATGTAAAATAC 59.098 40.000 0.00 0.00 0.00 1.89
7174 8484 6.456315 CGTCGCTGAAATGGATGTAAAATACA 60.456 38.462 0.00 0.00 43.80 2.29
7195 8515 5.595885 ACATCTAGATACATCCATATGCGC 58.404 41.667 4.54 0.00 36.50 6.09
7207 8527 3.874543 TCCATATGCGCGACAAGTAATTT 59.125 39.130 12.10 0.00 0.00 1.82
7213 8533 2.492001 CGCGACAAGTAATTTGGAACG 58.508 47.619 0.00 0.00 41.25 3.95
7221 8541 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
7222 8542 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
7261 8581 0.608640 AGACGTGAAAGCACCCCTAG 59.391 55.000 0.00 0.00 42.09 3.02
7262 8582 0.320697 GACGTGAAAGCACCCCTAGT 59.679 55.000 0.00 0.00 42.09 2.57
7263 8583 1.547372 GACGTGAAAGCACCCCTAGTA 59.453 52.381 0.00 0.00 42.09 1.82
7272 8592 7.771826 GTGAAAGCACCCCTAGTAATACATTTA 59.228 37.037 0.00 0.00 39.14 1.40
7367 8687 3.851976 ACGAGTCAAAGCTTCGATAGT 57.148 42.857 11.49 0.00 37.40 2.12
7368 8688 3.502920 ACGAGTCAAAGCTTCGATAGTG 58.497 45.455 11.49 0.00 37.40 2.74
7369 8689 2.280183 CGAGTCAAAGCTTCGATAGTGC 59.720 50.000 0.00 0.00 37.04 4.40
7371 8691 1.993370 GTCAAAGCTTCGATAGTGCGT 59.007 47.619 0.00 0.00 40.34 5.24
7372 8692 2.412089 GTCAAAGCTTCGATAGTGCGTT 59.588 45.455 0.00 0.00 40.34 4.84
7373 8693 2.411748 TCAAAGCTTCGATAGTGCGTTG 59.588 45.455 0.00 16.21 46.58 4.10
7374 8694 2.080286 AAGCTTCGATAGTGCGTTGT 57.920 45.000 0.00 0.00 40.34 3.32
7431 8753 2.996621 GACTGATTGTTGAGAACGGAGG 59.003 50.000 0.00 0.00 0.00 4.30
7578 8900 8.762426 GTTTTAGATGACCGGTATGTTATCTTC 58.238 37.037 7.34 0.64 40.70 2.87
7587 8909 5.163488 CCGGTATGTTATCTTCACTGGTACA 60.163 44.000 0.00 0.00 32.08 2.90
7656 8982 7.306574 CCGCAAAAGAAAAAGACAGATTTAACC 60.307 37.037 0.00 0.00 0.00 2.85
7676 9004 2.485479 CCGCATCCAGCTAGTTGGTTAT 60.485 50.000 23.31 9.45 42.61 1.89
7712 9040 7.042590 GCTTGACTAGAACTGATTGATGATCTG 60.043 40.741 0.00 0.00 39.04 2.90
7721 9049 5.101648 TGATTGATGATCTGCTGTTGGTA 57.898 39.130 0.00 0.00 35.69 3.25
7761 9090 6.391227 TTTTGAAGCTAAAACTCTGAAGGG 57.609 37.500 0.00 0.00 0.00 3.95
7763 9092 4.389374 TGAAGCTAAAACTCTGAAGGGTG 58.611 43.478 0.00 0.00 0.00 4.61
7766 9095 4.837972 AGCTAAAACTCTGAAGGGTGATC 58.162 43.478 0.00 0.00 0.00 2.92
7768 9097 5.721960 AGCTAAAACTCTGAAGGGTGATCTA 59.278 40.000 0.00 0.00 0.00 1.98
7769 9098 5.813157 GCTAAAACTCTGAAGGGTGATCTAC 59.187 44.000 0.00 0.00 0.00 2.59
7770 9099 6.351456 GCTAAAACTCTGAAGGGTGATCTACT 60.351 42.308 0.00 0.00 0.00 2.57
7771 9100 5.413309 AAACTCTGAAGGGTGATCTACTG 57.587 43.478 0.00 0.00 0.00 2.74
7773 9102 4.421131 ACTCTGAAGGGTGATCTACTGTT 58.579 43.478 0.00 0.00 0.00 3.16
7774 9103 4.221703 ACTCTGAAGGGTGATCTACTGTTG 59.778 45.833 0.00 0.00 0.00 3.33
7775 9104 3.515502 TCTGAAGGGTGATCTACTGTTGG 59.484 47.826 0.00 0.00 0.00 3.77
7776 9105 3.248024 TGAAGGGTGATCTACTGTTGGT 58.752 45.455 0.00 0.00 0.00 3.67
7777 9106 4.422057 TGAAGGGTGATCTACTGTTGGTA 58.578 43.478 0.00 0.00 0.00 3.25
7779 9108 5.487488 TGAAGGGTGATCTACTGTTGGTATT 59.513 40.000 0.00 0.00 0.00 1.89
7780 9109 5.359194 AGGGTGATCTACTGTTGGTATTG 57.641 43.478 0.00 0.00 0.00 1.90
7781 9110 3.877508 GGGTGATCTACTGTTGGTATTGC 59.122 47.826 0.00 0.00 0.00 3.56
7782 9111 4.384208 GGGTGATCTACTGTTGGTATTGCT 60.384 45.833 0.00 0.00 0.00 3.91
7784 9113 5.419542 GTGATCTACTGTTGGTATTGCTGA 58.580 41.667 0.00 0.00 0.00 4.26
7786 9115 6.540189 GTGATCTACTGTTGGTATTGCTGATT 59.460 38.462 0.00 0.00 0.00 2.57
7787 9116 7.710907 GTGATCTACTGTTGGTATTGCTGATTA 59.289 37.037 0.00 0.00 0.00 1.75
7789 9118 6.346096 TCTACTGTTGGTATTGCTGATTACC 58.654 40.000 0.00 0.00 0.00 2.85
7790 9119 4.917385 ACTGTTGGTATTGCTGATTACCA 58.083 39.130 0.00 0.00 40.47 3.25
7791 9120 5.321102 ACTGTTGGTATTGCTGATTACCAA 58.679 37.500 9.81 9.81 46.63 3.67
7805 9213 5.205056 TGATTACCAATTTACCATGGTCCC 58.795 41.667 23.76 0.00 46.94 4.46
7819 9227 1.376037 GTCCCAAACGCTCTCCCAG 60.376 63.158 0.00 0.00 0.00 4.45
7830 9238 2.276732 CTCTCCCAGCAAACCTCAAA 57.723 50.000 0.00 0.00 0.00 2.69
7863 9325 3.133003 ACGGATTCAGATACAGAAGTGGG 59.867 47.826 0.00 0.00 0.00 4.61
7921 9386 8.761497 CATAGGTGGACATTTATTTACTACGTG 58.239 37.037 0.00 0.00 0.00 4.49
7934 9399 5.585820 TTACTACGTGGACATAAGCATGA 57.414 39.130 5.70 0.00 35.96 3.07
8102 9577 1.049289 GTCCTCCCGGAATGTAGCCT 61.049 60.000 0.73 0.00 42.08 4.58
8186 9661 3.667497 TGATGAGAACTGGACACTCAC 57.333 47.619 0.00 0.00 42.18 3.51
8193 9668 1.363807 CTGGACACTCACTCGTGCA 59.636 57.895 0.00 0.00 38.45 4.57
8194 9669 0.037882 CTGGACACTCACTCGTGCAT 60.038 55.000 0.00 0.00 38.45 3.96
8195 9670 1.202348 CTGGACACTCACTCGTGCATA 59.798 52.381 0.00 0.00 38.45 3.14
8197 9672 2.233676 TGGACACTCACTCGTGCATATT 59.766 45.455 0.00 0.00 38.45 1.28
8198 9673 3.445805 TGGACACTCACTCGTGCATATTA 59.554 43.478 0.00 0.00 38.45 0.98
8199 9674 4.099419 TGGACACTCACTCGTGCATATTAT 59.901 41.667 0.00 0.00 38.45 1.28
8200 9675 5.300792 TGGACACTCACTCGTGCATATTATA 59.699 40.000 0.00 0.00 38.45 0.98
8201 9676 5.859114 GGACACTCACTCGTGCATATTATAG 59.141 44.000 0.00 0.00 38.45 1.31
8202 9677 6.294010 GGACACTCACTCGTGCATATTATAGA 60.294 42.308 0.00 0.00 38.45 1.98
8203 9678 7.220741 ACACTCACTCGTGCATATTATAGAT 57.779 36.000 0.00 0.00 38.45 1.98
8290 9766 2.109126 GGCTGCACATTCCCGTCTC 61.109 63.158 0.50 0.00 0.00 3.36
8295 9771 0.037326 GCACATTCCCGTCTCTGTCA 60.037 55.000 0.00 0.00 0.00 3.58
8404 9880 5.163663 TGTTCAATGGCGTCAAGAATAATCC 60.164 40.000 10.78 0.40 0.00 3.01
8457 9933 4.081050 GTGGCTTCAAGGTCACCC 57.919 61.111 0.00 0.00 35.99 4.61
8476 9952 1.741770 GTGTGCCCGACCATGTCTC 60.742 63.158 0.00 0.00 0.00 3.36
8526 10002 6.153680 ACAAAACCACCACATCACTCTTTTTA 59.846 34.615 0.00 0.00 0.00 1.52
8527 10003 6.391227 AAACCACCACATCACTCTTTTTAG 57.609 37.500 0.00 0.00 0.00 1.85
8528 10004 5.048846 ACCACCACATCACTCTTTTTAGT 57.951 39.130 0.00 0.00 0.00 2.24
8563 10099 2.950309 AGTAGGAGTACACCGTATGCTG 59.050 50.000 3.50 0.00 34.73 4.41
8608 10144 5.079643 AGTACCTGATCAAATTTGCCACTT 58.920 37.500 13.54 4.41 0.00 3.16
8632 10168 4.570874 GCATCCCGGGCCTTCTCC 62.571 72.222 18.49 0.00 0.00 3.71
8647 10183 3.883744 CTCCGCAACTTCCACGGCT 62.884 63.158 0.00 0.00 46.49 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 3.270027 TGTTGTTGTTGAGGACAGTCTG 58.730 45.455 0.00 0.00 39.94 3.51
154 155 4.019858 TGGAATGAACCTGTTGTTGTTGA 58.980 39.130 0.00 0.00 37.29 3.18
267 270 7.400439 AGGTTAGGAACAATACTTTAACCCTC 58.600 38.462 7.42 0.00 40.39 4.30
326 329 7.801716 ACATTGTATATGTACATGGGTGTTC 57.198 36.000 18.81 3.02 40.35 3.18
361 364 0.467290 AAGATGCGTGGGGTTTGTGT 60.467 50.000 0.00 0.00 0.00 3.72
383 386 5.357596 TGATAGCATTGTATTGAAAGCAGCA 59.642 36.000 0.00 0.00 0.00 4.41
398 403 3.372822 CCGGTTACGTTTGTGATAGCATT 59.627 43.478 0.00 0.00 38.78 3.56
446 451 3.785505 GCTTTGCTCGTGATTTATGGTCG 60.786 47.826 0.00 0.00 0.00 4.79
467 473 5.324697 GTGGAAAATTTGTCTAGACATCGC 58.675 41.667 25.68 13.45 41.52 4.58
515 521 9.495572 ACAAATTCAAACACCAAACTCTAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
552 558 8.379457 ACAGAATCTTGAACTTGTAGGTAAAC 57.621 34.615 0.00 0.00 0.00 2.01
586 592 9.915629 TTAAGCGGCAATATAAAAGAAGAAAAA 57.084 25.926 1.45 0.00 0.00 1.94
784 1664 4.663334 CCTTTGGGGGAATTATAGGTAGC 58.337 47.826 0.00 0.00 0.00 3.58
802 1682 4.643334 GGAGAATTTACCATAACGCCCTTT 59.357 41.667 0.00 0.00 0.00 3.11
986 1866 0.404040 ATGGACGCCAGGAAAAAGGA 59.596 50.000 4.90 0.00 36.75 3.36
989 1869 1.253100 GGAATGGACGCCAGGAAAAA 58.747 50.000 4.90 0.00 36.75 1.94
1224 2105 4.938756 AAGCCACCCCCACCCAGA 62.939 66.667 0.00 0.00 0.00 3.86
1225 2106 4.684134 CAAGCCACCCCCACCCAG 62.684 72.222 0.00 0.00 0.00 4.45
1228 2109 4.621087 AAGCAAGCCACCCCCACC 62.621 66.667 0.00 0.00 0.00 4.61
1439 2323 4.956085 TCCAAGTGATCGAAAGTTTGAGA 58.044 39.130 0.00 0.00 0.00 3.27
1455 2340 1.535462 CGAAATGGCGAGTTTCCAAGT 59.465 47.619 0.00 0.00 37.13 3.16
1459 2344 1.379527 ATCCGAAATGGCGAGTTTCC 58.620 50.000 0.00 0.00 37.80 3.13
1465 2350 1.065401 GCATTGAATCCGAAATGGCGA 59.935 47.619 0.00 0.00 37.80 5.54
1467 2352 1.202290 ACGCATTGAATCCGAAATGGC 60.202 47.619 0.00 0.00 37.80 4.40
1490 2375 3.007614 TCTGAGGTACCAAACTAAGCACC 59.992 47.826 15.94 0.00 0.00 5.01
1631 2519 2.240493 AATAGCATGTGGTACGAGCC 57.760 50.000 0.00 0.00 0.00 4.70
1697 2587 1.927895 AGTCATTCATTCCGCTCGAC 58.072 50.000 0.00 0.00 0.00 4.20
1806 2696 3.381272 ACTGATTAAATGTTCCATGCCCG 59.619 43.478 0.00 0.00 0.00 6.13
1868 2758 4.283212 AGAAGAGAGATAATGCTACTGCCC 59.717 45.833 0.00 0.00 38.71 5.36
1919 2809 4.184629 GGAATATCAGCAGAAACGTCACT 58.815 43.478 0.00 0.00 0.00 3.41
2072 2962 3.576078 TCACCTGTTCTTGGTCAATGT 57.424 42.857 0.00 0.00 35.28 2.71
2093 2983 2.238942 ATTCACTGTGAACGAGTGCA 57.761 45.000 24.17 1.11 39.45 4.57
2106 2996 5.106396 GCACACTTCATAAGCTCAATTCACT 60.106 40.000 0.00 0.00 0.00 3.41
2145 3035 2.224113 ACAGTTTTCAGCCAAATGCAGG 60.224 45.455 0.00 0.00 44.83 4.85
2283 3181 1.135046 CAGATGCTACTGATTCGGCG 58.865 55.000 0.00 0.00 39.94 6.46
2361 3259 3.565902 ACAGCTTAAAAGAGCCACTTGAC 59.434 43.478 0.00 0.00 43.74 3.18
2389 3287 1.197812 GAGCCTTTTGCATCCCCAAT 58.802 50.000 0.00 0.00 44.83 3.16
2390 3288 0.114954 AGAGCCTTTTGCATCCCCAA 59.885 50.000 0.00 0.00 44.83 4.12
2489 3387 6.259387 GGTAGGGATGTTCAATTTAGTTACGG 59.741 42.308 0.00 0.00 0.00 4.02
2931 3830 6.258727 CCACTACTCATAGCACTAAAATGGTG 59.741 42.308 0.00 0.00 37.70 4.17
3326 4225 4.094590 CCATTTTGTGCAAGACAGCAAAAA 59.905 37.500 12.77 0.45 46.84 1.94
3412 4311 9.642343 AAGTCAAAAGAAGGGTTAAACTTATCT 57.358 29.630 0.00 0.00 0.00 1.98
3451 4351 2.224843 TGTCAGACCAAATGCCTCACAT 60.225 45.455 0.00 0.00 42.30 3.21
3452 4352 1.142667 TGTCAGACCAAATGCCTCACA 59.857 47.619 0.00 0.00 0.00 3.58
3453 4353 1.896220 TGTCAGACCAAATGCCTCAC 58.104 50.000 0.00 0.00 0.00 3.51
3838 4753 3.704545 TGGGCCAATATTTCCCTGAAT 57.295 42.857 18.58 0.00 40.69 2.57
3893 4808 3.629142 ATAGAGTGACGGAAAAAGGGG 57.371 47.619 0.00 0.00 0.00 4.79
3894 4809 5.959618 AAAATAGAGTGACGGAAAAAGGG 57.040 39.130 0.00 0.00 0.00 3.95
3984 4901 2.975732 TCAGTGCTGATAGCCTCAAG 57.024 50.000 0.00 0.00 41.51 3.02
4331 5629 3.068590 CCTTTGGATATTGGCTTGCGAAT 59.931 43.478 7.87 7.87 0.00 3.34
4653 5951 1.045350 CGGATCTCCTTGGAGGCTGA 61.045 60.000 15.81 0.00 34.61 4.26
4862 6160 5.702865 TGTTAGATTTGCTTTGAGATGCAC 58.297 37.500 0.00 0.00 39.05 4.57
4864 6162 8.965172 CATATTGTTAGATTTGCTTTGAGATGC 58.035 33.333 0.00 0.00 0.00 3.91
5310 6608 2.505819 GGATTCCCTCAAGAGCTTGGTA 59.494 50.000 10.09 0.00 40.78 3.25
5324 6622 1.001393 TTCTGCCCAACGGATTCCC 60.001 57.895 0.00 0.00 32.28 3.97
5753 7051 1.081641 CTGCTCGGCTTTGTTGCTG 60.082 57.895 0.00 0.00 40.46 4.41
5754 7052 1.227943 TCTGCTCGGCTTTGTTGCT 60.228 52.632 0.00 0.00 0.00 3.91
5755 7053 1.208614 CTCTGCTCGGCTTTGTTGC 59.791 57.895 0.00 0.00 0.00 4.17
5815 7113 5.411361 TGTTATACATGCCTGACTTTGTCAC 59.589 40.000 0.00 0.00 37.67 3.67
6231 7529 1.228245 TTCAACCCAGGCAGCTGAC 60.228 57.895 20.43 17.00 0.00 3.51
6651 7949 1.518903 GCTCCCGCTGAATTATGGCC 61.519 60.000 0.00 0.00 0.00 5.36
6894 8194 4.934356 ACACAACAAATATCCAGGGACAT 58.066 39.130 0.00 0.00 0.00 3.06
6927 8227 9.753674 AGGAAAATGAATAACTACTCCATTTCA 57.246 29.630 0.00 0.00 36.70 2.69
6991 8291 8.017373 CGTTGATTGAGCTGAAAAATTAAGAGA 58.983 33.333 0.00 0.00 0.00 3.10
6998 8298 4.278170 TGGTCGTTGATTGAGCTGAAAAAT 59.722 37.500 0.00 0.00 34.99 1.82
7096 8396 9.110502 GTGACCATAATTTTGTTTGGGTAAAAA 57.889 29.630 0.00 0.00 33.39 1.94
7135 8445 1.274167 AGCGACGAGTAATTTGGGACA 59.726 47.619 0.00 0.00 0.00 4.02
7138 8448 2.004583 TCAGCGACGAGTAATTTGGG 57.995 50.000 0.00 0.00 0.00 4.12
7140 8450 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
7141 8451 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
7149 8459 4.335082 TTTTACATCCATTTCAGCGACG 57.665 40.909 0.00 0.00 0.00 5.12
7168 8478 9.755804 CGCATATGGATGTATCTAGATGTATTT 57.244 33.333 15.79 0.00 38.66 1.40
7169 8479 7.869937 GCGCATATGGATGTATCTAGATGTATT 59.130 37.037 15.79 0.00 38.66 1.89
7170 8480 7.374272 GCGCATATGGATGTATCTAGATGTAT 58.626 38.462 15.79 9.11 38.66 2.29
7171 8481 6.513393 CGCGCATATGGATGTATCTAGATGTA 60.513 42.308 15.79 4.44 38.66 2.29
7172 8482 5.595885 GCGCATATGGATGTATCTAGATGT 58.404 41.667 15.79 1.25 38.66 3.06
7173 8483 4.678742 CGCGCATATGGATGTATCTAGATG 59.321 45.833 15.79 8.05 39.18 2.90
7174 8484 4.580580 TCGCGCATATGGATGTATCTAGAT 59.419 41.667 10.73 10.73 35.30 1.98
7192 8512 2.239201 GTTCCAAATTACTTGTCGCGC 58.761 47.619 0.00 0.00 32.65 6.86
7195 8515 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
7207 8527 2.512896 AGATACTACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
7213 8533 6.940430 ACTCTAGTAGATACTACTCCCTCC 57.060 45.833 13.57 0.00 37.73 4.30
7261 8581 9.855021 ACAAAGAGGCACAAATAAATGTATTAC 57.145 29.630 0.00 0.00 30.84 1.89
7263 8583 9.855021 GTACAAAGAGGCACAAATAAATGTATT 57.145 29.630 0.00 0.00 30.84 1.89
7272 8592 3.636300 TGCAAGTACAAAGAGGCACAAAT 59.364 39.130 0.00 0.00 0.00 2.32
7367 8687 6.145858 ACATCTAACGTATAACAAACAACGCA 59.854 34.615 0.00 0.00 38.87 5.24
7368 8688 6.527957 ACATCTAACGTATAACAAACAACGC 58.472 36.000 0.00 0.00 38.87 4.84
7431 8753 1.358759 CCGGACACAAACAACCTGC 59.641 57.895 0.00 0.00 0.00 4.85
7609 8931 4.679106 CGGCAGTTATCAGTCAAGATCACT 60.679 45.833 0.00 0.00 33.85 3.41
7676 9004 4.467795 AGTTCTAGTCAAGCTGCCTGATAA 59.532 41.667 3.99 0.00 0.00 1.75
7712 9040 0.739813 AGGTTCGCGATACCAACAGC 60.740 55.000 29.35 16.47 38.16 4.40
7721 9049 2.932614 CAAAATCTCAGAGGTTCGCGAT 59.067 45.455 10.88 0.00 0.00 4.58
7761 9090 5.419542 TCAGCAATACCAACAGTAGATCAC 58.580 41.667 0.00 0.00 33.42 3.06
7763 9092 7.171678 GGTAATCAGCAATACCAACAGTAGATC 59.828 40.741 0.00 0.00 41.05 2.75
7766 9095 6.112734 TGGTAATCAGCAATACCAACAGTAG 58.887 40.000 2.31 0.00 46.44 2.57
7768 9097 4.917385 TGGTAATCAGCAATACCAACAGT 58.083 39.130 2.31 0.00 46.44 3.55
7779 9108 5.268387 ACCATGGTAAATTGGTAATCAGCA 58.732 37.500 18.10 0.00 44.36 4.41
7780 9109 5.221244 GGACCATGGTAAATTGGTAATCAGC 60.221 44.000 19.80 0.00 46.14 4.26
7781 9110 5.301805 GGGACCATGGTAAATTGGTAATCAG 59.698 44.000 19.80 0.00 46.14 2.90
7782 9111 5.205056 GGGACCATGGTAAATTGGTAATCA 58.795 41.667 19.80 0.00 46.14 2.57
7784 9113 5.213868 TGGGACCATGGTAAATTGGTAAT 57.786 39.130 19.80 0.00 46.14 1.89
7786 9115 4.676799 TTGGGACCATGGTAAATTGGTA 57.323 40.909 19.80 0.00 46.14 3.25
7789 9118 3.843999 CGTTTGGGACCATGGTAAATTG 58.156 45.455 19.80 8.19 0.00 2.32
7790 9119 2.232696 GCGTTTGGGACCATGGTAAATT 59.767 45.455 19.80 0.00 0.00 1.82
7791 9120 1.822371 GCGTTTGGGACCATGGTAAAT 59.178 47.619 19.80 0.00 0.00 1.40
7819 9227 1.797348 CGTGTGTGGTTTGAGGTTTGC 60.797 52.381 0.00 0.00 0.00 3.68
7827 9235 0.882927 ATCCGTCCGTGTGTGGTTTG 60.883 55.000 0.00 0.00 0.00 2.93
7830 9238 1.005394 GAATCCGTCCGTGTGTGGT 60.005 57.895 0.00 0.00 0.00 4.16
7934 9399 1.546323 CCTTTCTGTGATGGGTGCAGT 60.546 52.381 0.00 0.00 0.00 4.40
7939 9404 2.716424 TCTTTCCCTTTCTGTGATGGGT 59.284 45.455 0.00 0.00 40.48 4.51
8147 9622 0.460311 ATCTTACTGAACCCGCCTCG 59.540 55.000 0.00 0.00 0.00 4.63
8148 9623 1.480954 TCATCTTACTGAACCCGCCTC 59.519 52.381 0.00 0.00 0.00 4.70
8149 9624 1.568504 TCATCTTACTGAACCCGCCT 58.431 50.000 0.00 0.00 0.00 5.52
8150 9625 2.158957 TCATCATCTTACTGAACCCGCC 60.159 50.000 0.00 0.00 0.00 6.13
8151 9626 3.126831 CTCATCATCTTACTGAACCCGC 58.873 50.000 0.00 0.00 0.00 6.13
8194 9669 9.117183 CCCGGCGCTATGTATATATCTATAATA 57.883 37.037 7.64 0.00 0.00 0.98
8195 9670 7.416438 GCCCGGCGCTATGTATATATCTATAAT 60.416 40.741 7.64 0.00 0.00 1.28
8197 9672 5.356190 GCCCGGCGCTATGTATATATCTATA 59.644 44.000 7.64 0.00 0.00 1.31
8198 9673 4.158025 GCCCGGCGCTATGTATATATCTAT 59.842 45.833 7.64 0.00 0.00 1.98
8199 9674 3.504906 GCCCGGCGCTATGTATATATCTA 59.495 47.826 7.64 0.00 0.00 1.98
8200 9675 2.296471 GCCCGGCGCTATGTATATATCT 59.704 50.000 7.64 0.00 0.00 1.98
8201 9676 2.673833 GCCCGGCGCTATGTATATATC 58.326 52.381 7.64 0.00 0.00 1.63
8202 9677 2.814280 GCCCGGCGCTATGTATATAT 57.186 50.000 7.64 0.00 0.00 0.86
8223 9699 3.692593 TGAGTGCACATTTCATCATCAGG 59.307 43.478 21.04 0.00 0.00 3.86
8457 9933 3.118454 GACATGGTCGGGCACACG 61.118 66.667 0.00 0.00 0.00 4.49
8540 10016 4.213694 CAGCATACGGTGTACTCCTACTAG 59.786 50.000 11.98 0.00 35.85 2.57
8541 10017 4.132336 CAGCATACGGTGTACTCCTACTA 58.868 47.826 11.98 0.00 35.85 1.82
8542 10018 2.950309 CAGCATACGGTGTACTCCTACT 59.050 50.000 11.98 0.02 35.85 2.57
8547 10023 1.067212 CCTCCAGCATACGGTGTACTC 59.933 57.143 0.00 0.00 39.05 2.59
8548 10024 1.112113 CCTCCAGCATACGGTGTACT 58.888 55.000 0.00 0.00 39.05 2.73
8550 10026 1.399714 CTCCTCCAGCATACGGTGTA 58.600 55.000 0.00 0.00 39.05 2.90
8551 10027 1.330655 CCTCCTCCAGCATACGGTGT 61.331 60.000 0.00 0.00 39.05 4.16
8552 10028 1.043116 TCCTCCTCCAGCATACGGTG 61.043 60.000 0.00 0.00 40.44 4.94
8554 10030 0.605589 GATCCTCCTCCAGCATACGG 59.394 60.000 0.00 0.00 0.00 4.02
8555 10031 1.543802 GAGATCCTCCTCCAGCATACG 59.456 57.143 0.00 0.00 0.00 3.06
8556 10032 2.603021 TGAGATCCTCCTCCAGCATAC 58.397 52.381 0.00 0.00 32.32 2.39
8563 10099 1.202746 GGCACAATGAGATCCTCCTCC 60.203 57.143 0.00 0.00 32.32 4.30
8623 10159 2.041115 GGAAGTTGCGGAGAAGGCC 61.041 63.158 0.00 0.00 0.00 5.19
8632 10168 1.082104 GAAAGCCGTGGAAGTTGCG 60.082 57.895 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.