Multiple sequence alignment - TraesCS4B01G171800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G171800 chr4B 100.000 6947 0 0 1 6947 376134461 376141407 0.000000e+00 12829.0
1 TraesCS4B01G171800 chr4B 92.273 220 17 0 1 220 507735137 507734918 5.230000e-81 313.0
2 TraesCS4B01G171800 chr4B 92.273 220 17 0 1 220 586807625 586807844 5.230000e-81 313.0
3 TraesCS4B01G171800 chr4D 93.718 3677 128 50 3312 6947 301731142 301734756 0.000000e+00 5415.0
4 TraesCS4B01G171800 chr4D 89.692 1135 43 14 849 1940 301729002 301730105 0.000000e+00 1380.0
5 TraesCS4B01G171800 chr4D 95.376 757 31 4 1941 2695 301730399 301731153 0.000000e+00 1201.0
6 TraesCS4B01G171800 chr4D 89.969 638 41 11 221 846 301725788 301726414 0.000000e+00 802.0
7 TraesCS4B01G171800 chr4D 90.123 81 7 1 3593 3672 50156044 50156124 3.430000e-18 104.0
8 TraesCS4B01G171800 chr4D 83.908 87 13 1 3588 3673 467755879 467755793 1.610000e-11 82.4
9 TraesCS4B01G171800 chr4A 96.581 2018 54 7 3315 5321 179144272 179142259 0.000000e+00 3330.0
10 TraesCS4B01G171800 chr4A 90.737 1900 75 24 856 2695 179146122 179144264 0.000000e+00 2440.0
11 TraesCS4B01G171800 chr4A 92.318 1432 59 23 5530 6947 179142262 179140868 0.000000e+00 1988.0
12 TraesCS4B01G171800 chr4A 85.567 582 46 23 221 790 179147016 179146461 6.040000e-160 575.0
13 TraesCS4B01G171800 chr3A 99.681 626 1 1 2695 3319 438358591 438359216 0.000000e+00 1144.0
14 TraesCS4B01G171800 chr3A 99.172 604 4 1 2717 3320 381289743 381290345 0.000000e+00 1086.0
15 TraesCS4B01G171800 chr3A 93.567 513 25 1 2686 3190 87379455 87378943 0.000000e+00 758.0
16 TraesCS4B01G171800 chr3A 83.168 101 13 4 2413 2511 611706239 611706337 9.600000e-14 89.8
17 TraesCS4B01G171800 chr5A 99.679 624 2 0 2693 3316 51212883 51212260 0.000000e+00 1142.0
18 TraesCS4B01G171800 chr5A 99.499 599 2 1 2717 3314 621219516 621218918 0.000000e+00 1088.0
19 TraesCS4B01G171800 chr5A 89.286 84 8 1 3589 3671 427829078 427829161 3.430000e-18 104.0
20 TraesCS4B01G171800 chr5A 84.884 86 12 1 3588 3672 313311210 313311125 1.240000e-12 86.1
21 TraesCS4B01G171800 chr6B 99.678 621 2 0 2694 3314 555954634 555955254 0.000000e+00 1136.0
22 TraesCS4B01G171800 chr7A 99.200 625 3 1 2693 3315 735788767 735788143 0.000000e+00 1125.0
23 TraesCS4B01G171800 chr7A 99.833 598 1 0 2717 3314 64713846 64713249 0.000000e+00 1099.0
24 TraesCS4B01G171800 chr7A 93.580 514 23 3 2687 3190 15529102 15529615 0.000000e+00 758.0
25 TraesCS4B01G171800 chr5B 95.806 620 1 1 2695 3314 380315145 380314551 0.000000e+00 977.0
26 TraesCS4B01G171800 chr5B 92.273 220 17 0 1 220 208947031 208947250 5.230000e-81 313.0
27 TraesCS4B01G171800 chr5B 100.000 28 0 0 2143 2170 531407979 531408006 1.300000e-02 52.8
28 TraesCS4B01G171800 chr2B 92.760 221 16 0 1 221 503482201 503481981 3.130000e-83 320.0
29 TraesCS4B01G171800 chr2B 85.897 78 10 1 3598 3674 492186210 492186133 1.610000e-11 82.4
30 TraesCS4B01G171800 chr1B 92.727 220 16 0 1 220 587358600 587358381 1.120000e-82 318.0
31 TraesCS4B01G171800 chr7B 91.342 231 19 1 1 230 488896751 488896981 1.450000e-81 315.0
32 TraesCS4B01G171800 chr7B 92.273 220 17 0 1 220 574349306 574349087 5.230000e-81 313.0
33 TraesCS4B01G171800 chrUn 92.273 220 17 0 1 220 66272862 66273081 5.230000e-81 313.0
34 TraesCS4B01G171800 chr5D 90.909 231 19 2 1 230 392182945 392182716 6.770000e-80 309.0
35 TraesCS4B01G171800 chr6A 93.333 150 8 2 3188 3337 435767635 435767488 3.260000e-53 220.0
36 TraesCS4B01G171800 chr1D 90.000 90 6 3 3586 3673 327220507 327220595 5.690000e-21 113.0
37 TraesCS4B01G171800 chr1A 85.882 85 11 1 3589 3672 251695701 251695785 9.600000e-14 89.8
38 TraesCS4B01G171800 chr3D 82.353 102 14 4 2412 2511 469158951 469159050 1.240000e-12 86.1
39 TraesCS4B01G171800 chr3B 86.667 75 9 1 2438 2511 623154512 623154586 1.610000e-11 82.4
40 TraesCS4B01G171800 chr3B 96.970 33 1 0 2141 2173 448908820 448908788 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G171800 chr4B 376134461 376141407 6946 False 12829.00 12829 100.00000 1 6947 1 chr4B.!!$F1 6946
1 TraesCS4B01G171800 chr4D 301725788 301734756 8968 False 2199.50 5415 92.18875 221 6947 4 chr4D.!!$F2 6726
2 TraesCS4B01G171800 chr4A 179140868 179147016 6148 True 2083.25 3330 91.30075 221 6947 4 chr4A.!!$R1 6726
3 TraesCS4B01G171800 chr3A 438358591 438359216 625 False 1144.00 1144 99.68100 2695 3319 1 chr3A.!!$F2 624
4 TraesCS4B01G171800 chr3A 381289743 381290345 602 False 1086.00 1086 99.17200 2717 3320 1 chr3A.!!$F1 603
5 TraesCS4B01G171800 chr3A 87378943 87379455 512 True 758.00 758 93.56700 2686 3190 1 chr3A.!!$R1 504
6 TraesCS4B01G171800 chr5A 51212260 51212883 623 True 1142.00 1142 99.67900 2693 3316 1 chr5A.!!$R1 623
7 TraesCS4B01G171800 chr5A 621218918 621219516 598 True 1088.00 1088 99.49900 2717 3314 1 chr5A.!!$R3 597
8 TraesCS4B01G171800 chr6B 555954634 555955254 620 False 1136.00 1136 99.67800 2694 3314 1 chr6B.!!$F1 620
9 TraesCS4B01G171800 chr7A 735788143 735788767 624 True 1125.00 1125 99.20000 2693 3315 1 chr7A.!!$R2 622
10 TraesCS4B01G171800 chr7A 64713249 64713846 597 True 1099.00 1099 99.83300 2717 3314 1 chr7A.!!$R1 597
11 TraesCS4B01G171800 chr7A 15529102 15529615 513 False 758.00 758 93.58000 2687 3190 1 chr7A.!!$F1 503
12 TraesCS4B01G171800 chr5B 380314551 380315145 594 True 977.00 977 95.80600 2695 3314 1 chr5B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.110295 TGTCATGTGGGGTCCAAGTG 59.890 55.000 0.0 0.0 34.18 3.16 F
111 112 0.110486 GTCATGTGGGGTCCAAGTGT 59.890 55.000 0.0 0.0 34.18 3.55 F
112 113 0.110295 TCATGTGGGGTCCAAGTGTG 59.890 55.000 0.0 0.0 34.18 3.82 F
1316 3936 0.321653 GTACGCCATCCATCCCATCC 60.322 60.000 0.0 0.0 0.00 3.51 F
1323 3943 0.103228 ATCCATCCCATCCCATCCCA 60.103 55.000 0.0 0.0 0.00 4.37 F
1324 3944 0.103228 TCCATCCCATCCCATCCCAT 60.103 55.000 0.0 0.0 0.00 4.00 F
1769 4417 0.107263 TCCTGTTGCTGTGTTGCTGA 60.107 50.000 0.0 0.0 0.00 4.26 F
2325 5281 0.743345 CCTTAACCAGCCGCACTACC 60.743 60.000 0.0 0.0 0.00 3.18 F
2333 5289 3.390521 CCGCACTACCTGGAGGCA 61.391 66.667 0.0 0.0 39.32 4.75 F
3608 6582 1.378514 CCCCCTTCGTCCCACAATG 60.379 63.158 0.0 0.0 0.00 2.82 F
5313 8297 0.246635 AGCACACCCGCTAGTTACTG 59.753 55.000 0.0 0.0 41.55 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 3727 0.169009 GCTAAGCAACAAGGGAAGCG 59.831 55.000 0.00 0.0 0.00 4.68 R
1306 3926 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.0 0.00 3.51 R
1312 3932 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.0 0.00 3.51 R
2423 5379 0.034186 GTGGCCCAACATCCAGATCA 60.034 55.000 0.00 0.0 32.15 2.92 R
2691 5653 3.608474 GCGACGCCTTGAAAACATAGTTT 60.608 43.478 9.14 0.0 0.00 2.66 R
3524 6498 8.665643 AAGCATCAAAATGTTTTCTTCATCAA 57.334 26.923 0.00 0.0 33.04 2.57 R
3553 6527 1.896465 CCTACTGCCAGATAGCTACCC 59.104 57.143 0.00 0.0 0.00 3.69 R
3608 6582 3.181500 ACACAGCTTCCAAAAACGTCTTC 60.181 43.478 0.00 0.0 0.00 2.87 R
4430 7405 4.047030 GCAATGAACTGCGCTTCG 57.953 55.556 9.73 0.0 31.50 3.79 R
5505 8489 0.108472 TCTGAGATGGCGCAAGAGTG 60.108 55.000 10.83 0.0 43.02 3.51 R
6860 9898 0.034670 AAGCCCCAGATGCTCTCAAC 60.035 55.000 0.00 0.0 38.34 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.467374 TTTTGCCAAGTTTGCCTAAGG 57.533 42.857 0.00 0.00 0.00 2.69
23 24 2.080654 TTGCCAAGTTTGCCTAAGGT 57.919 45.000 0.00 0.00 0.00 3.50
24 25 2.080654 TGCCAAGTTTGCCTAAGGTT 57.919 45.000 0.00 0.00 0.00 3.50
25 26 3.231207 TGCCAAGTTTGCCTAAGGTTA 57.769 42.857 0.00 0.00 0.00 2.85
26 27 3.567397 TGCCAAGTTTGCCTAAGGTTAA 58.433 40.909 0.00 0.00 0.00 2.01
27 28 4.156477 TGCCAAGTTTGCCTAAGGTTAAT 58.844 39.130 0.00 0.00 0.00 1.40
28 29 4.591072 TGCCAAGTTTGCCTAAGGTTAATT 59.409 37.500 0.00 0.00 0.00 1.40
29 30 5.168569 GCCAAGTTTGCCTAAGGTTAATTC 58.831 41.667 0.00 0.00 0.00 2.17
30 31 5.279256 GCCAAGTTTGCCTAAGGTTAATTCA 60.279 40.000 0.00 0.00 0.00 2.57
31 32 6.574269 GCCAAGTTTGCCTAAGGTTAATTCAT 60.574 38.462 0.00 0.00 0.00 2.57
32 33 7.035612 CCAAGTTTGCCTAAGGTTAATTCATC 58.964 38.462 0.00 0.00 0.00 2.92
33 34 7.309744 CCAAGTTTGCCTAAGGTTAATTCATCA 60.310 37.037 0.00 0.00 0.00 3.07
34 35 7.775053 AGTTTGCCTAAGGTTAATTCATCAA 57.225 32.000 0.00 0.00 0.00 2.57
35 36 8.189119 AGTTTGCCTAAGGTTAATTCATCAAA 57.811 30.769 0.00 0.00 0.00 2.69
36 37 8.646900 AGTTTGCCTAAGGTTAATTCATCAAAA 58.353 29.630 0.00 0.00 0.00 2.44
37 38 9.435688 GTTTGCCTAAGGTTAATTCATCAAAAT 57.564 29.630 0.00 0.00 0.00 1.82
38 39 9.434420 TTTGCCTAAGGTTAATTCATCAAAATG 57.566 29.630 0.00 0.00 0.00 2.32
39 40 8.359875 TGCCTAAGGTTAATTCATCAAAATGA 57.640 30.769 0.00 0.00 40.18 2.57
40 41 8.469200 TGCCTAAGGTTAATTCATCAAAATGAG 58.531 33.333 0.00 0.00 42.72 2.90
41 42 8.686334 GCCTAAGGTTAATTCATCAAAATGAGA 58.314 33.333 0.00 0.00 42.72 3.27
43 44 9.727627 CTAAGGTTAATTCATCAAAATGAGAGC 57.272 33.333 0.00 0.00 42.72 4.09
44 45 7.105241 AGGTTAATTCATCAAAATGAGAGCC 57.895 36.000 0.00 0.00 42.72 4.70
45 46 6.664816 AGGTTAATTCATCAAAATGAGAGCCA 59.335 34.615 0.00 0.00 42.72 4.75
46 47 6.753744 GGTTAATTCATCAAAATGAGAGCCAC 59.246 38.462 0.00 0.00 42.72 5.01
47 48 5.988310 AATTCATCAAAATGAGAGCCACA 57.012 34.783 0.00 0.00 42.72 4.17
48 49 5.988310 ATTCATCAAAATGAGAGCCACAA 57.012 34.783 0.00 0.00 42.72 3.33
49 50 5.381174 TTCATCAAAATGAGAGCCACAAG 57.619 39.130 0.00 0.00 42.72 3.16
50 51 4.401022 TCATCAAAATGAGAGCCACAAGT 58.599 39.130 0.00 0.00 36.98 3.16
51 52 4.828939 TCATCAAAATGAGAGCCACAAGTT 59.171 37.500 0.00 0.00 36.98 2.66
52 53 4.572985 TCAAAATGAGAGCCACAAGTTG 57.427 40.909 0.00 0.00 0.00 3.16
53 54 6.076490 CATCAAAATGAGAGCCACAAGTTGG 61.076 44.000 7.96 0.00 40.99 3.77
63 64 3.293311 CCACAAGTTGGCAAATCTGAG 57.707 47.619 7.96 1.34 39.07 3.35
64 65 2.029649 CCACAAGTTGGCAAATCTGAGG 60.030 50.000 7.96 6.70 39.07 3.86
65 66 2.029649 CACAAGTTGGCAAATCTGAGGG 60.030 50.000 7.96 0.00 0.00 4.30
66 67 2.158475 ACAAGTTGGCAAATCTGAGGGA 60.158 45.455 7.96 0.00 0.00 4.20
67 68 2.892852 CAAGTTGGCAAATCTGAGGGAA 59.107 45.455 0.00 0.00 0.00 3.97
68 69 3.463048 AGTTGGCAAATCTGAGGGAAT 57.537 42.857 0.00 0.00 0.00 3.01
69 70 3.359950 AGTTGGCAAATCTGAGGGAATC 58.640 45.455 0.00 0.00 0.00 2.52
70 71 3.011032 AGTTGGCAAATCTGAGGGAATCT 59.989 43.478 0.00 0.00 0.00 2.40
71 72 3.744940 TGGCAAATCTGAGGGAATCTT 57.255 42.857 0.00 0.00 0.00 2.40
72 73 3.359033 TGGCAAATCTGAGGGAATCTTG 58.641 45.455 0.00 0.00 0.00 3.02
73 74 2.100418 GGCAAATCTGAGGGAATCTTGC 59.900 50.000 0.00 0.00 37.36 4.01
74 75 2.100418 GCAAATCTGAGGGAATCTTGCC 59.900 50.000 0.00 0.00 39.23 4.52
75 76 3.359033 CAAATCTGAGGGAATCTTGCCA 58.641 45.455 3.19 0.00 41.75 4.92
76 77 3.958798 CAAATCTGAGGGAATCTTGCCAT 59.041 43.478 3.19 0.00 41.75 4.40
77 78 5.135383 CAAATCTGAGGGAATCTTGCCATA 58.865 41.667 3.19 0.00 41.75 2.74
78 79 5.595814 AATCTGAGGGAATCTTGCCATAT 57.404 39.130 3.19 0.00 41.75 1.78
79 80 5.595814 ATCTGAGGGAATCTTGCCATATT 57.404 39.130 3.19 0.00 41.75 1.28
80 81 5.393068 TCTGAGGGAATCTTGCCATATTT 57.607 39.130 3.19 0.00 41.75 1.40
81 82 5.769835 TCTGAGGGAATCTTGCCATATTTT 58.230 37.500 3.19 0.00 41.75 1.82
82 83 6.197168 TCTGAGGGAATCTTGCCATATTTTT 58.803 36.000 3.19 0.00 41.75 1.94
100 101 3.550950 TTTTGCGTGTATGTCATGTGG 57.449 42.857 0.00 0.00 35.64 4.17
101 102 1.447945 TTGCGTGTATGTCATGTGGG 58.552 50.000 0.00 0.00 35.64 4.61
102 103 0.392327 TGCGTGTATGTCATGTGGGG 60.392 55.000 0.00 0.00 35.64 4.96
103 104 0.392461 GCGTGTATGTCATGTGGGGT 60.392 55.000 0.00 0.00 35.64 4.95
104 105 1.651987 CGTGTATGTCATGTGGGGTC 58.348 55.000 0.00 0.00 0.00 4.46
105 106 1.742411 CGTGTATGTCATGTGGGGTCC 60.742 57.143 0.00 0.00 0.00 4.46
106 107 1.280710 GTGTATGTCATGTGGGGTCCA 59.719 52.381 0.00 0.00 0.00 4.02
107 108 1.988846 TGTATGTCATGTGGGGTCCAA 59.011 47.619 0.00 0.00 34.18 3.53
108 109 2.026356 TGTATGTCATGTGGGGTCCAAG 60.026 50.000 0.00 0.00 34.18 3.61
109 110 1.075601 ATGTCATGTGGGGTCCAAGT 58.924 50.000 0.00 0.00 34.18 3.16
110 111 0.110295 TGTCATGTGGGGTCCAAGTG 59.890 55.000 0.00 0.00 34.18 3.16
111 112 0.110486 GTCATGTGGGGTCCAAGTGT 59.890 55.000 0.00 0.00 34.18 3.55
112 113 0.110295 TCATGTGGGGTCCAAGTGTG 59.890 55.000 0.00 0.00 34.18 3.82
114 115 2.597510 GTGGGGTCCAAGTGTGGC 60.598 66.667 0.00 0.00 45.54 5.01
115 116 2.776526 TGGGGTCCAAGTGTGGCT 60.777 61.111 0.00 0.00 45.54 4.75
116 117 2.391130 TGGGGTCCAAGTGTGGCTT 61.391 57.895 0.00 0.00 45.54 4.35
124 125 2.712057 CAAGTGTGGCTTGCCTAAAG 57.288 50.000 13.18 0.00 46.68 1.85
125 126 1.956477 CAAGTGTGGCTTGCCTAAAGT 59.044 47.619 13.18 0.00 46.68 2.66
126 127 3.146066 CAAGTGTGGCTTGCCTAAAGTA 58.854 45.455 13.18 0.00 46.68 2.24
127 128 3.721087 AGTGTGGCTTGCCTAAAGTAT 57.279 42.857 13.18 0.00 38.25 2.12
128 129 3.347216 AGTGTGGCTTGCCTAAAGTATG 58.653 45.455 13.18 0.00 38.25 2.39
129 130 2.423538 GTGTGGCTTGCCTAAAGTATGG 59.576 50.000 13.18 0.00 38.25 2.74
138 139 3.352648 GCCTAAAGTATGGCTTGAACCA 58.647 45.455 0.00 0.00 45.26 3.67
139 140 3.761752 GCCTAAAGTATGGCTTGAACCAA 59.238 43.478 0.00 0.00 44.65 3.67
140 141 4.219725 GCCTAAAGTATGGCTTGAACCAAA 59.780 41.667 0.00 0.00 44.65 3.28
141 142 5.709966 CCTAAAGTATGGCTTGAACCAAAC 58.290 41.667 0.00 0.00 44.65 2.93
142 143 5.242838 CCTAAAGTATGGCTTGAACCAAACA 59.757 40.000 0.00 0.00 44.65 2.83
143 144 4.584327 AAGTATGGCTTGAACCAAACAC 57.416 40.909 0.00 0.00 44.65 3.32
144 145 3.832527 AGTATGGCTTGAACCAAACACT 58.167 40.909 0.00 0.00 44.65 3.55
145 146 3.821033 AGTATGGCTTGAACCAAACACTC 59.179 43.478 0.00 0.00 44.65 3.51
146 147 2.136298 TGGCTTGAACCAAACACTCA 57.864 45.000 0.00 0.00 36.55 3.41
147 148 2.665165 TGGCTTGAACCAAACACTCAT 58.335 42.857 0.00 0.00 36.55 2.90
148 149 2.622942 TGGCTTGAACCAAACACTCATC 59.377 45.455 0.00 0.00 36.55 2.92
149 150 2.887152 GGCTTGAACCAAACACTCATCT 59.113 45.455 0.00 0.00 0.00 2.90
150 151 4.072131 GGCTTGAACCAAACACTCATCTA 58.928 43.478 0.00 0.00 0.00 1.98
151 152 4.518970 GGCTTGAACCAAACACTCATCTAA 59.481 41.667 0.00 0.00 0.00 2.10
152 153 5.335191 GGCTTGAACCAAACACTCATCTAAG 60.335 44.000 0.00 0.00 0.00 2.18
153 154 5.239525 GCTTGAACCAAACACTCATCTAAGT 59.760 40.000 0.00 0.00 0.00 2.24
154 155 6.238759 GCTTGAACCAAACACTCATCTAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
155 156 7.041372 GCTTGAACCAAACACTCATCTAAGTTA 60.041 37.037 0.00 0.00 0.00 2.24
156 157 7.962964 TGAACCAAACACTCATCTAAGTTAG 57.037 36.000 3.29 3.29 0.00 2.34
157 158 7.506114 TGAACCAAACACTCATCTAAGTTAGT 58.494 34.615 9.71 0.00 0.00 2.24
158 159 7.656137 TGAACCAAACACTCATCTAAGTTAGTC 59.344 37.037 9.71 0.00 0.00 2.59
159 160 7.062749 ACCAAACACTCATCTAAGTTAGTCA 57.937 36.000 9.71 0.00 0.00 3.41
160 161 7.506114 ACCAAACACTCATCTAAGTTAGTCAA 58.494 34.615 9.71 0.00 0.00 3.18
161 162 7.990886 ACCAAACACTCATCTAAGTTAGTCAAA 59.009 33.333 9.71 0.00 0.00 2.69
162 163 8.283291 CCAAACACTCATCTAAGTTAGTCAAAC 58.717 37.037 9.71 0.00 38.46 2.93
174 175 6.673154 AGTTAGTCAAACTTGCGTAACTTT 57.327 33.333 9.03 0.00 46.61 2.66
175 176 7.775397 AGTTAGTCAAACTTGCGTAACTTTA 57.225 32.000 9.03 0.00 46.61 1.85
176 177 7.848491 AGTTAGTCAAACTTGCGTAACTTTAG 58.152 34.615 9.03 0.00 46.61 1.85
177 178 5.668558 AGTCAAACTTGCGTAACTTTAGG 57.331 39.130 0.00 0.00 0.00 2.69
178 179 5.121105 AGTCAAACTTGCGTAACTTTAGGT 58.879 37.500 0.00 0.00 0.00 3.08
179 180 5.007332 AGTCAAACTTGCGTAACTTTAGGTG 59.993 40.000 0.00 0.00 0.00 4.00
180 181 4.877251 TCAAACTTGCGTAACTTTAGGTGT 59.123 37.500 0.00 0.00 0.00 4.16
181 182 4.806342 AACTTGCGTAACTTTAGGTGTG 57.194 40.909 0.00 0.00 0.00 3.82
182 183 3.135994 ACTTGCGTAACTTTAGGTGTGG 58.864 45.455 0.00 0.00 0.00 4.17
183 184 1.515081 TGCGTAACTTTAGGTGTGGC 58.485 50.000 0.00 0.00 0.00 5.01
184 185 1.202663 TGCGTAACTTTAGGTGTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
185 186 1.874872 GCGTAACTTTAGGTGTGGCAA 59.125 47.619 0.00 0.00 0.00 4.52
186 187 2.350102 GCGTAACTTTAGGTGTGGCAAC 60.350 50.000 0.00 0.00 0.00 4.17
187 188 3.135994 CGTAACTTTAGGTGTGGCAACT 58.864 45.455 0.00 0.00 34.83 3.16
188 189 3.562557 CGTAACTTTAGGTGTGGCAACTT 59.437 43.478 0.00 0.00 31.86 2.66
189 190 4.035909 CGTAACTTTAGGTGTGGCAACTTT 59.964 41.667 0.00 0.00 31.86 2.66
190 191 5.449451 CGTAACTTTAGGTGTGGCAACTTTT 60.449 40.000 0.00 0.00 31.86 2.27
191 192 4.385358 ACTTTAGGTGTGGCAACTTTTG 57.615 40.909 0.00 0.00 31.86 2.44
192 193 4.020543 ACTTTAGGTGTGGCAACTTTTGA 58.979 39.130 0.00 0.00 31.86 2.69
193 194 4.142249 ACTTTAGGTGTGGCAACTTTTGAC 60.142 41.667 0.00 0.00 39.85 3.18
210 211 7.506296 CTTTTGACAAAGTTAGTCACAAACC 57.494 36.000 0.10 0.00 44.95 3.27
211 212 6.576662 TTTGACAAAGTTAGTCACAAACCA 57.423 33.333 0.00 0.00 44.95 3.67
212 213 6.576662 TTGACAAAGTTAGTCACAAACCAA 57.423 33.333 0.00 0.00 44.95 3.67
213 214 6.576662 TGACAAAGTTAGTCACAAACCAAA 57.423 33.333 0.00 0.00 40.80 3.28
214 215 6.383415 TGACAAAGTTAGTCACAAACCAAAC 58.617 36.000 0.00 0.00 40.80 2.93
215 216 6.016192 TGACAAAGTTAGTCACAAACCAAACA 60.016 34.615 0.00 0.00 40.80 2.83
216 217 6.750148 ACAAAGTTAGTCACAAACCAAACAA 58.250 32.000 0.00 0.00 30.35 2.83
217 218 6.643360 ACAAAGTTAGTCACAAACCAAACAAC 59.357 34.615 0.00 0.00 30.35 3.32
218 219 5.319140 AGTTAGTCACAAACCAAACAACC 57.681 39.130 0.00 0.00 30.35 3.77
219 220 4.158949 AGTTAGTCACAAACCAAACAACCC 59.841 41.667 0.00 0.00 30.35 4.11
225 226 3.056179 CACAAACCAAACAACCCTGAAGT 60.056 43.478 0.00 0.00 0.00 3.01
313 314 8.806429 TTCTCTTGCATTGTAAAGATGGATTA 57.194 30.769 0.00 0.00 32.20 1.75
444 448 5.066375 TCCAATGCTCCAAAATATGTCGAAG 59.934 40.000 0.00 0.00 0.00 3.79
493 497 6.092259 GCCGATGATAGTAAAACAGACAAACT 59.908 38.462 0.00 0.00 0.00 2.66
561 565 5.556355 ATTGATGTACGTCTCGTCAGTAA 57.444 39.130 15.91 0.19 41.54 2.24
562 566 4.332186 TGATGTACGTCTCGTCAGTAAC 57.668 45.455 15.91 0.00 41.54 2.50
563 567 3.747529 TGATGTACGTCTCGTCAGTAACA 59.252 43.478 15.91 0.00 41.54 2.41
672 676 9.976776 CTGTTATGTTATAGTAGGGGATAGAGA 57.023 37.037 0.00 0.00 0.00 3.10
730 734 1.461127 CACGCTTTGTAGAGGCTGAAC 59.539 52.381 0.00 0.00 0.00 3.18
794 808 3.071479 GGAAACACAGATAAACAGGCGA 58.929 45.455 0.00 0.00 0.00 5.54
899 3499 2.107366 GAAAGAGAGAGACAGAGGGGG 58.893 57.143 0.00 0.00 0.00 5.40
951 3554 1.075450 ACGGGTACAGAGGATCCCC 60.075 63.158 8.55 0.00 36.84 4.81
1092 3712 4.021016 GGAGGATAACTATGCCTACCTGTG 60.021 50.000 0.00 0.00 30.70 3.66
1107 3727 1.734465 CCTGTGCGAATCTTGAACCTC 59.266 52.381 0.00 0.00 0.00 3.85
1149 3769 2.562738 TCTGCTCAGAGATCCGTTTGAA 59.437 45.455 0.00 0.00 32.82 2.69
1165 3785 6.940298 TCCGTTTGAAATCCTGTTTATTCTCT 59.060 34.615 0.00 0.00 0.00 3.10
1306 3926 1.449601 CCACCACTGGTACGCCATC 60.450 63.158 0.00 0.00 45.05 3.51
1307 3927 1.449601 CACCACTGGTACGCCATCC 60.450 63.158 0.00 0.00 45.05 3.51
1308 3928 1.916273 ACCACTGGTACGCCATCCA 60.916 57.895 0.00 0.00 45.05 3.41
1309 3929 1.271840 ACCACTGGTACGCCATCCAT 61.272 55.000 0.00 0.00 45.05 3.41
1310 3930 0.532862 CCACTGGTACGCCATCCATC 60.533 60.000 0.00 0.00 45.05 3.51
1311 3931 0.532862 CACTGGTACGCCATCCATCC 60.533 60.000 0.00 0.00 45.05 3.51
1312 3932 1.071471 CTGGTACGCCATCCATCCC 59.929 63.158 0.00 0.00 45.05 3.85
1313 3933 1.690985 TGGTACGCCATCCATCCCA 60.691 57.895 0.00 0.00 40.46 4.37
1314 3934 1.059584 TGGTACGCCATCCATCCCAT 61.060 55.000 0.00 0.00 40.46 4.00
1315 3935 0.321653 GGTACGCCATCCATCCCATC 60.322 60.000 0.00 0.00 34.09 3.51
1316 3936 0.321653 GTACGCCATCCATCCCATCC 60.322 60.000 0.00 0.00 0.00 3.51
1317 3937 1.488705 TACGCCATCCATCCCATCCC 61.489 60.000 0.00 0.00 0.00 3.85
1318 3938 2.832778 CGCCATCCATCCCATCCCA 61.833 63.158 0.00 0.00 0.00 4.37
1319 3939 1.778981 GCCATCCATCCCATCCCAT 59.221 57.895 0.00 0.00 0.00 4.00
1320 3940 0.324091 GCCATCCATCCCATCCCATC 60.324 60.000 0.00 0.00 0.00 3.51
1321 3941 0.333993 CCATCCATCCCATCCCATCC 59.666 60.000 0.00 0.00 0.00 3.51
1322 3942 0.333993 CATCCATCCCATCCCATCCC 59.666 60.000 0.00 0.00 0.00 3.85
1323 3943 0.103228 ATCCATCCCATCCCATCCCA 60.103 55.000 0.00 0.00 0.00 4.37
1324 3944 0.103228 TCCATCCCATCCCATCCCAT 60.103 55.000 0.00 0.00 0.00 4.00
1325 3945 0.333993 CCATCCCATCCCATCCCATC 59.666 60.000 0.00 0.00 0.00 3.51
1368 3997 5.405873 GCCTAGTAATTCATCGGCTTACTTC 59.594 44.000 0.72 0.00 37.07 3.01
1371 4000 3.933861 AATTCATCGGCTTACTTCCCT 57.066 42.857 0.00 0.00 0.00 4.20
1373 4002 2.691409 TCATCGGCTTACTTCCCTTG 57.309 50.000 0.00 0.00 0.00 3.61
1389 4018 1.203001 CCTTGGGTTGTTAAGAGGGCA 60.203 52.381 0.00 0.00 0.00 5.36
1399 4028 5.562298 TGTTAAGAGGGCAACTACTTTCT 57.438 39.130 0.00 0.00 34.83 2.52
1400 4029 6.675413 TGTTAAGAGGGCAACTACTTTCTA 57.325 37.500 0.00 0.00 34.83 2.10
1401 4030 6.698380 TGTTAAGAGGGCAACTACTTTCTAG 58.302 40.000 0.00 0.00 34.83 2.43
1426 4055 0.322816 TTGGGATGTGCTCTGCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
1463 4092 6.966021 TCTTGCAGAACAAACCAAGTATAAC 58.034 36.000 0.00 0.00 37.96 1.89
1471 4100 7.920682 AGAACAAACCAAGTATAACTGCAAAAG 59.079 33.333 0.00 0.00 0.00 2.27
1474 4103 3.190535 ACCAAGTATAACTGCAAAAGCGG 59.809 43.478 0.00 0.00 0.00 5.52
1512 4141 6.985188 TGCTACATGTTCTTATGAAACTCC 57.015 37.500 2.30 0.00 33.52 3.85
1513 4142 5.880332 TGCTACATGTTCTTATGAAACTCCC 59.120 40.000 2.30 0.00 33.52 4.30
1540 4169 8.329346 AGATAGAGATGGAGAAATGGAAAAGA 57.671 34.615 0.00 0.00 0.00 2.52
1617 4246 2.589798 TTAGGGATGTAAACGGAGCG 57.410 50.000 0.00 0.00 0.00 5.03
1769 4417 0.107263 TCCTGTTGCTGTGTTGCTGA 60.107 50.000 0.00 0.00 0.00 4.26
1803 4451 4.870190 GGAACGGTGTGGTGTTCT 57.130 55.556 5.24 0.00 43.10 3.01
2025 4977 6.710295 GCCCCTGTTCTTTTAATGAAATGTTT 59.290 34.615 0.00 0.00 0.00 2.83
2124 5080 3.738282 GTGTTGCCGCATTTGTTTTCATA 59.262 39.130 0.00 0.00 0.00 2.15
2180 5136 8.701908 AAGAGATACTACCGGTAATGAATACA 57.298 34.615 16.65 0.00 36.14 2.29
2210 5166 4.873827 ACGCTGATACAAATCCGTATGTTT 59.126 37.500 0.00 0.00 31.08 2.83
2309 5265 4.457834 AACGTCTTTCGATGATCTCCTT 57.542 40.909 0.00 0.00 42.86 3.36
2325 5281 0.743345 CCTTAACCAGCCGCACTACC 60.743 60.000 0.00 0.00 0.00 3.18
2333 5289 3.390521 CCGCACTACCTGGAGGCA 61.391 66.667 0.00 0.00 39.32 4.75
2489 5450 3.392285 ACTGAGCCACATAATAGCCATGA 59.608 43.478 0.00 0.00 0.00 3.07
2686 5648 9.712305 CCCTAAGGTGAACAGAATATTAGTATG 57.288 37.037 0.00 0.00 0.00 2.39
2689 5651 8.438676 AAGGTGAACAGAATATTAGTATGTGC 57.561 34.615 0.00 0.00 0.00 4.57
2690 5652 7.796054 AGGTGAACAGAATATTAGTATGTGCT 58.204 34.615 0.00 0.00 0.00 4.40
2691 5653 8.924303 AGGTGAACAGAATATTAGTATGTGCTA 58.076 33.333 0.00 0.00 0.00 3.49
3365 6338 6.782082 TCATTAGCAGTCATGTAGAGAACT 57.218 37.500 0.00 0.00 0.00 3.01
3524 6498 8.952278 TGTGGCGTTTCTAATACAAATAAAGAT 58.048 29.630 0.00 0.00 0.00 2.40
3553 6527 8.133754 TGAAGAAAACATTTTGATGCTTTCAG 57.866 30.769 14.18 0.00 38.43 3.02
3608 6582 1.378514 CCCCCTTCGTCCCACAATG 60.379 63.158 0.00 0.00 0.00 2.82
3621 6595 3.067461 TCCCACAATGAAGACGTTTTTGG 59.933 43.478 0.00 0.00 0.00 3.28
3692 6666 8.978472 AGAGTACTCAATATGTGCTAAAAGGTA 58.022 33.333 24.44 0.00 30.86 3.08
3737 6711 8.162878 AGCTGGTAATGATGATTTACTTCATG 57.837 34.615 0.00 0.00 40.77 3.07
3793 6767 7.874528 TCATGTAGTGAGCTGGTAATGATTATG 59.125 37.037 0.00 0.00 31.80 1.90
4132 7106 5.887035 TGAATTATTCACAGATGTGCATCCA 59.113 36.000 8.11 0.00 45.25 3.41
4147 7121 8.931385 ATGTGCATCCACTTGAATAAATAAAC 57.069 30.769 0.00 0.00 42.54 2.01
4389 7364 6.312918 CACCTTGGTTAGTATACACATCACAC 59.687 42.308 5.50 0.00 0.00 3.82
4430 7405 8.527810 TCCATGTTAAATACCTGACCATTTTTC 58.472 33.333 0.00 0.00 0.00 2.29
5158 8142 1.153939 CAGTCGAGCCAGAGAACGG 60.154 63.158 0.00 0.00 0.00 4.44
5313 8297 0.246635 AGCACACCCGCTAGTTACTG 59.753 55.000 0.00 0.00 41.55 2.74
5349 8333 8.234136 TGATACCATCTTCTGTAATTCGTAGT 57.766 34.615 0.00 0.00 0.00 2.73
5374 8358 7.386848 GTGCCAGTTTTAGATAGTAACTTGTCA 59.613 37.037 0.00 0.00 30.08 3.58
5393 8377 7.441458 ACTTGTCACCTCACAAATAAGAACTAC 59.559 37.037 0.00 0.00 35.83 2.73
5468 8452 6.625081 CGTTTCTTTTCTTCCTCACCAGTTTT 60.625 38.462 0.00 0.00 0.00 2.43
5546 8530 5.640357 AGACAGTTTCTTGTAACACAAACGA 59.360 36.000 0.00 0.00 37.69 3.85
5552 8536 3.061028 TCTTGTAACACAAACGACACACG 59.939 43.478 0.00 0.00 37.69 4.49
5793 8777 0.035317 TGCGATGCTTTGAGAGTGGT 59.965 50.000 0.00 0.00 0.00 4.16
5849 8833 6.883744 TGCCAGTGTTTCCTTTAAGAAAAAT 58.116 32.000 0.00 0.00 37.49 1.82
5884 8868 4.954875 AGTCCAGTCTGCTAATATGCTTC 58.045 43.478 0.00 0.00 0.00 3.86
5931 8915 4.638421 TGTGGCATGTTAATTACTACTGGC 59.362 41.667 0.00 0.00 0.00 4.85
6061 9076 2.530701 ACCTCAGGTGTCTGACTAAGG 58.469 52.381 9.51 10.23 44.39 2.69
6087 9102 9.810545 GTTAGATAGAAAAGAGATGCTAGTTGT 57.189 33.333 0.00 0.00 0.00 3.32
6135 9150 4.680237 CCCCGCTGACGTTGAGCA 62.680 66.667 17.64 0.00 36.12 4.26
6165 9180 3.735143 TCGAGGACACGACGTGAA 58.265 55.556 33.12 9.02 37.37 3.18
6166 9181 1.572941 TCGAGGACACGACGTGAAG 59.427 57.895 33.12 17.80 37.37 3.02
6167 9182 0.881600 TCGAGGACACGACGTGAAGA 60.882 55.000 33.12 19.53 37.37 2.87
6168 9183 0.725118 CGAGGACACGACGTGAAGAC 60.725 60.000 33.12 18.57 36.96 3.01
6231 9246 3.087370 TCATTCTCGTCTCTTCTCCCA 57.913 47.619 0.00 0.00 0.00 4.37
6343 9361 4.699522 GGTCCGAAAGTGGCCGCT 62.700 66.667 14.67 14.67 0.00 5.52
6378 9396 3.513768 TTGTCTGCGGCGCTTCTGA 62.514 57.895 33.26 21.02 0.00 3.27
6394 9412 0.249868 CTGAGACGGTGACCTTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
6395 9413 0.396435 TGAGACGGTGACCTTTGCAT 59.604 50.000 0.00 0.00 0.00 3.96
6396 9414 1.079503 GAGACGGTGACCTTTGCATC 58.920 55.000 0.00 0.00 0.00 3.91
6425 9443 1.536073 CGCTCTGGTCACCTTGGAGA 61.536 60.000 13.67 0.00 0.00 3.71
6437 9455 0.809241 CTTGGAGATGTCCTCAGCGC 60.809 60.000 10.72 0.00 44.30 5.92
6541 9559 0.109132 CCAGCTTGCAATCCGGAAAC 60.109 55.000 9.01 0.64 0.00 2.78
6614 9641 3.225608 CCTGAGGGGTAGTAGGTGG 57.774 63.158 0.00 0.00 0.00 4.61
6616 9643 0.325296 CTGAGGGGTAGTAGGTGGCA 60.325 60.000 0.00 0.00 0.00 4.92
6682 9709 2.047844 CTGCCCCGAGTGTCACAG 60.048 66.667 5.62 0.00 0.00 3.66
6729 9756 2.467946 CTTGCTTTGAGCCCTGCGTG 62.468 60.000 0.00 0.00 41.51 5.34
6821 9859 1.444119 TTGCTTCAGTTCCCACGCAC 61.444 55.000 0.00 0.00 0.00 5.34
6837 9875 2.290008 ACGCACCCATGATTGTTACTCA 60.290 45.455 0.00 0.00 0.00 3.41
6842 9880 6.128553 CGCACCCATGATTGTTACTCATATAC 60.129 42.308 0.00 0.00 32.18 1.47
6843 9881 6.710295 GCACCCATGATTGTTACTCATATACA 59.290 38.462 0.00 0.00 32.18 2.29
6844 9882 7.095060 GCACCCATGATTGTTACTCATATACAG 60.095 40.741 0.00 0.00 32.18 2.74
6845 9883 7.933577 CACCCATGATTGTTACTCATATACAGT 59.066 37.037 0.00 0.00 32.18 3.55
6852 9890 9.776158 GATTGTTACTCATATACAGTAGGATCG 57.224 37.037 0.00 0.00 0.00 3.69
6855 9893 8.155510 TGTTACTCATATACAGTAGGATCGAGT 58.844 37.037 0.00 0.00 35.51 4.18
6856 9894 9.650539 GTTACTCATATACAGTAGGATCGAGTA 57.349 37.037 0.00 0.00 33.52 2.59
6857 9895 9.872721 TTACTCATATACAGTAGGATCGAGTAG 57.127 37.037 0.00 0.00 35.53 2.57
6858 9896 7.909518 ACTCATATACAGTAGGATCGAGTAGT 58.090 38.462 0.00 0.00 29.82 2.73
6859 9897 9.033711 ACTCATATACAGTAGGATCGAGTAGTA 57.966 37.037 0.00 0.00 29.82 1.82
6860 9898 9.524106 CTCATATACAGTAGGATCGAGTAGTAG 57.476 40.741 0.00 0.00 0.00 2.57
6861 9899 9.033711 TCATATACAGTAGGATCGAGTAGTAGT 57.966 37.037 0.00 0.00 0.00 2.73
6862 9900 9.656040 CATATACAGTAGGATCGAGTAGTAGTT 57.344 37.037 0.00 0.00 0.00 2.24
6863 9901 7.966246 ATACAGTAGGATCGAGTAGTAGTTG 57.034 40.000 0.00 0.00 0.00 3.16
6864 9902 5.987098 ACAGTAGGATCGAGTAGTAGTTGA 58.013 41.667 0.00 0.00 0.00 3.18
6865 9903 6.050432 ACAGTAGGATCGAGTAGTAGTTGAG 58.950 44.000 1.46 0.00 0.00 3.02
6866 9904 6.127111 ACAGTAGGATCGAGTAGTAGTTGAGA 60.127 42.308 1.46 0.00 0.00 3.27
6867 9905 6.422701 CAGTAGGATCGAGTAGTAGTTGAGAG 59.577 46.154 1.46 0.00 0.00 3.20
6868 9906 4.131596 AGGATCGAGTAGTAGTTGAGAGC 58.868 47.826 1.46 0.00 0.00 4.09
6869 9907 3.878103 GGATCGAGTAGTAGTTGAGAGCA 59.122 47.826 1.46 0.00 0.00 4.26
6870 9908 4.517453 GGATCGAGTAGTAGTTGAGAGCAT 59.483 45.833 1.46 0.00 0.00 3.79
6871 9909 5.334569 GGATCGAGTAGTAGTTGAGAGCATC 60.335 48.000 1.46 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.339587 TGAATTAACCTTAGGCAAACTTGG 57.660 37.500 0.00 0.00 0.00 3.61
8 9 7.601856 TGATGAATTAACCTTAGGCAAACTTG 58.398 34.615 0.00 0.00 0.00 3.16
9 10 7.775053 TGATGAATTAACCTTAGGCAAACTT 57.225 32.000 0.00 0.00 0.00 2.66
10 11 7.775053 TTGATGAATTAACCTTAGGCAAACT 57.225 32.000 0.00 0.00 0.00 2.66
11 12 8.825667 TTTTGATGAATTAACCTTAGGCAAAC 57.174 30.769 0.00 0.00 0.00 2.93
12 13 9.434420 CATTTTGATGAATTAACCTTAGGCAAA 57.566 29.630 0.00 0.00 0.00 3.68
13 14 8.811017 TCATTTTGATGAATTAACCTTAGGCAA 58.189 29.630 0.00 0.00 0.00 4.52
14 15 8.359875 TCATTTTGATGAATTAACCTTAGGCA 57.640 30.769 0.00 0.00 0.00 4.75
15 16 8.686334 TCTCATTTTGATGAATTAACCTTAGGC 58.314 33.333 0.00 0.00 0.00 3.93
17 18 9.727627 GCTCTCATTTTGATGAATTAACCTTAG 57.272 33.333 0.00 0.00 0.00 2.18
18 19 8.686334 GGCTCTCATTTTGATGAATTAACCTTA 58.314 33.333 0.00 0.00 0.00 2.69
19 20 7.178983 TGGCTCTCATTTTGATGAATTAACCTT 59.821 33.333 0.00 0.00 0.00 3.50
20 21 6.664816 TGGCTCTCATTTTGATGAATTAACCT 59.335 34.615 0.00 0.00 0.00 3.50
21 22 6.753744 GTGGCTCTCATTTTGATGAATTAACC 59.246 38.462 0.00 0.00 0.00 2.85
22 23 7.315142 TGTGGCTCTCATTTTGATGAATTAAC 58.685 34.615 0.00 0.00 0.00 2.01
23 24 7.465353 TGTGGCTCTCATTTTGATGAATTAA 57.535 32.000 0.00 0.00 0.00 1.40
24 25 7.177216 ACTTGTGGCTCTCATTTTGATGAATTA 59.823 33.333 0.00 0.00 0.00 1.40
25 26 5.988310 TGTGGCTCTCATTTTGATGAATT 57.012 34.783 0.00 0.00 0.00 2.17
26 27 5.479375 ACTTGTGGCTCTCATTTTGATGAAT 59.521 36.000 0.00 0.00 0.00 2.57
27 28 4.828939 ACTTGTGGCTCTCATTTTGATGAA 59.171 37.500 0.00 0.00 0.00 2.57
28 29 4.401022 ACTTGTGGCTCTCATTTTGATGA 58.599 39.130 0.00 0.00 0.00 2.92
29 30 4.778534 ACTTGTGGCTCTCATTTTGATG 57.221 40.909 0.00 0.00 0.00 3.07
30 31 4.021719 CCAACTTGTGGCTCTCATTTTGAT 60.022 41.667 0.00 0.00 41.72 2.57
31 32 3.318839 CCAACTTGTGGCTCTCATTTTGA 59.681 43.478 0.00 0.00 41.72 2.69
32 33 3.645884 CCAACTTGTGGCTCTCATTTTG 58.354 45.455 0.00 0.00 41.72 2.44
44 45 2.029649 CCCTCAGATTTGCCAACTTGTG 60.030 50.000 0.00 0.00 0.00 3.33
45 46 2.158475 TCCCTCAGATTTGCCAACTTGT 60.158 45.455 0.00 0.00 0.00 3.16
46 47 2.517959 TCCCTCAGATTTGCCAACTTG 58.482 47.619 0.00 0.00 0.00 3.16
47 48 2.978156 TCCCTCAGATTTGCCAACTT 57.022 45.000 0.00 0.00 0.00 2.66
48 49 2.978156 TTCCCTCAGATTTGCCAACT 57.022 45.000 0.00 0.00 0.00 3.16
49 50 3.359950 AGATTCCCTCAGATTTGCCAAC 58.640 45.455 0.00 0.00 0.00 3.77
50 51 3.744940 AGATTCCCTCAGATTTGCCAA 57.255 42.857 0.00 0.00 0.00 4.52
51 52 3.359033 CAAGATTCCCTCAGATTTGCCA 58.641 45.455 0.00 0.00 0.00 4.92
52 53 2.100418 GCAAGATTCCCTCAGATTTGCC 59.900 50.000 0.00 0.00 33.75 4.52
53 54 2.100418 GGCAAGATTCCCTCAGATTTGC 59.900 50.000 0.00 0.00 36.61 3.68
54 55 3.359033 TGGCAAGATTCCCTCAGATTTG 58.641 45.455 0.00 0.00 0.00 2.32
55 56 3.744940 TGGCAAGATTCCCTCAGATTT 57.255 42.857 0.00 0.00 0.00 2.17
56 57 3.967467 ATGGCAAGATTCCCTCAGATT 57.033 42.857 0.00 0.00 0.00 2.40
57 58 5.595814 AATATGGCAAGATTCCCTCAGAT 57.404 39.130 0.00 0.00 0.00 2.90
58 59 5.393068 AAATATGGCAAGATTCCCTCAGA 57.607 39.130 0.00 0.00 0.00 3.27
59 60 6.475596 AAAAATATGGCAAGATTCCCTCAG 57.524 37.500 0.00 0.00 0.00 3.35
79 80 3.304996 CCCACATGACATACACGCAAAAA 60.305 43.478 0.00 0.00 0.00 1.94
80 81 2.227626 CCCACATGACATACACGCAAAA 59.772 45.455 0.00 0.00 0.00 2.44
81 82 1.809547 CCCACATGACATACACGCAAA 59.190 47.619 0.00 0.00 0.00 3.68
82 83 1.447945 CCCACATGACATACACGCAA 58.552 50.000 0.00 0.00 0.00 4.85
83 84 0.392327 CCCCACATGACATACACGCA 60.392 55.000 0.00 0.00 0.00 5.24
84 85 0.392461 ACCCCACATGACATACACGC 60.392 55.000 0.00 0.00 0.00 5.34
85 86 1.651987 GACCCCACATGACATACACG 58.348 55.000 0.00 0.00 0.00 4.49
86 87 1.280710 TGGACCCCACATGACATACAC 59.719 52.381 0.00 0.00 0.00 2.90
87 88 1.662686 TGGACCCCACATGACATACA 58.337 50.000 0.00 0.00 0.00 2.29
88 89 2.026262 ACTTGGACCCCACATGACATAC 60.026 50.000 0.00 0.00 30.78 2.39
89 90 2.026356 CACTTGGACCCCACATGACATA 60.026 50.000 0.00 0.00 30.78 2.29
90 91 1.075601 ACTTGGACCCCACATGACAT 58.924 50.000 0.00 0.00 30.78 3.06
91 92 0.110295 CACTTGGACCCCACATGACA 59.890 55.000 0.00 0.00 30.78 3.58
92 93 0.110486 ACACTTGGACCCCACATGAC 59.890 55.000 0.00 0.00 30.78 3.06
93 94 0.110295 CACACTTGGACCCCACATGA 59.890 55.000 0.00 0.00 30.78 3.07
94 95 2.644887 CACACTTGGACCCCACATG 58.355 57.895 0.00 0.00 30.78 3.21
106 107 2.364972 ACTTTAGGCAAGCCACACTT 57.635 45.000 14.40 0.00 40.05 3.16
107 108 3.347216 CATACTTTAGGCAAGCCACACT 58.653 45.455 14.40 0.00 38.92 3.55
108 109 2.423538 CCATACTTTAGGCAAGCCACAC 59.576 50.000 14.40 0.00 38.92 3.82
109 110 2.722094 CCATACTTTAGGCAAGCCACA 58.278 47.619 14.40 0.00 38.92 4.17
118 119 5.242838 TGTTTGGTTCAAGCCATACTTTAGG 59.757 40.000 7.69 0.00 39.91 2.69
119 120 6.016276 AGTGTTTGGTTCAAGCCATACTTTAG 60.016 38.462 7.69 0.00 39.91 1.85
120 121 5.830991 AGTGTTTGGTTCAAGCCATACTTTA 59.169 36.000 7.69 0.00 39.91 1.85
121 122 4.649218 AGTGTTTGGTTCAAGCCATACTTT 59.351 37.500 7.69 0.00 39.91 2.66
122 123 4.215109 AGTGTTTGGTTCAAGCCATACTT 58.785 39.130 7.69 0.00 39.91 2.24
123 124 3.821033 GAGTGTTTGGTTCAAGCCATACT 59.179 43.478 7.69 3.80 39.91 2.12
124 125 3.568007 TGAGTGTTTGGTTCAAGCCATAC 59.432 43.478 0.63 0.63 39.74 2.39
125 126 3.826524 TGAGTGTTTGGTTCAAGCCATA 58.173 40.909 0.00 0.00 38.48 2.74
126 127 2.665165 TGAGTGTTTGGTTCAAGCCAT 58.335 42.857 0.00 0.00 38.48 4.40
127 128 2.136298 TGAGTGTTTGGTTCAAGCCA 57.864 45.000 0.00 0.00 36.62 4.75
128 129 2.887152 AGATGAGTGTTTGGTTCAAGCC 59.113 45.455 0.00 0.00 0.00 4.35
129 130 5.239525 ACTTAGATGAGTGTTTGGTTCAAGC 59.760 40.000 0.00 0.00 0.00 4.01
130 131 6.867662 ACTTAGATGAGTGTTTGGTTCAAG 57.132 37.500 0.00 0.00 0.00 3.02
131 132 7.990886 ACTAACTTAGATGAGTGTTTGGTTCAA 59.009 33.333 2.65 0.00 0.00 2.69
132 133 7.506114 ACTAACTTAGATGAGTGTTTGGTTCA 58.494 34.615 2.65 0.00 0.00 3.18
133 134 7.656137 TGACTAACTTAGATGAGTGTTTGGTTC 59.344 37.037 2.65 0.00 0.00 3.62
134 135 7.506114 TGACTAACTTAGATGAGTGTTTGGTT 58.494 34.615 2.65 0.00 0.00 3.67
135 136 7.062749 TGACTAACTTAGATGAGTGTTTGGT 57.937 36.000 2.65 0.00 0.00 3.67
136 137 7.962964 TTGACTAACTTAGATGAGTGTTTGG 57.037 36.000 2.65 0.00 0.00 3.28
137 138 9.046296 AGTTTGACTAACTTAGATGAGTGTTTG 57.954 33.333 2.65 0.00 44.73 2.93
163 164 1.874872 GCCACACCTAAAGTTACGCAA 59.125 47.619 0.00 0.00 0.00 4.85
164 165 1.202663 TGCCACACCTAAAGTTACGCA 60.203 47.619 0.00 0.00 0.00 5.24
165 166 1.515081 TGCCACACCTAAAGTTACGC 58.485 50.000 0.00 0.00 0.00 4.42
166 167 3.135994 AGTTGCCACACCTAAAGTTACG 58.864 45.455 0.00 0.00 0.00 3.18
167 168 5.509716 AAAGTTGCCACACCTAAAGTTAC 57.490 39.130 0.00 0.00 0.00 2.50
168 169 5.652891 TCAAAAGTTGCCACACCTAAAGTTA 59.347 36.000 0.00 0.00 0.00 2.24
169 170 4.464597 TCAAAAGTTGCCACACCTAAAGTT 59.535 37.500 0.00 0.00 0.00 2.66
170 171 4.020543 TCAAAAGTTGCCACACCTAAAGT 58.979 39.130 0.00 0.00 0.00 2.66
171 172 4.142271 TGTCAAAAGTTGCCACACCTAAAG 60.142 41.667 0.00 0.00 0.00 1.85
172 173 3.764434 TGTCAAAAGTTGCCACACCTAAA 59.236 39.130 0.00 0.00 0.00 1.85
173 174 3.357203 TGTCAAAAGTTGCCACACCTAA 58.643 40.909 0.00 0.00 0.00 2.69
174 175 3.006112 TGTCAAAAGTTGCCACACCTA 57.994 42.857 0.00 0.00 0.00 3.08
175 176 1.846007 TGTCAAAAGTTGCCACACCT 58.154 45.000 0.00 0.00 0.00 4.00
176 177 2.663826 TTGTCAAAAGTTGCCACACC 57.336 45.000 0.00 0.00 0.00 4.16
186 187 7.087639 TGGTTTGTGACTAACTTTGTCAAAAG 58.912 34.615 9.55 0.00 44.63 2.27
187 188 6.982852 TGGTTTGTGACTAACTTTGTCAAAA 58.017 32.000 9.55 6.31 44.63 2.44
188 189 6.576662 TGGTTTGTGACTAACTTTGTCAAA 57.423 33.333 9.55 0.45 44.63 2.69
189 190 6.576662 TTGGTTTGTGACTAACTTTGTCAA 57.423 33.333 9.55 2.93 44.63 3.18
190 191 6.016192 TGTTTGGTTTGTGACTAACTTTGTCA 60.016 34.615 9.55 2.35 41.48 3.58
191 192 6.383415 TGTTTGGTTTGTGACTAACTTTGTC 58.617 36.000 9.55 0.00 35.21 3.18
192 193 6.334102 TGTTTGGTTTGTGACTAACTTTGT 57.666 33.333 9.55 0.00 0.00 2.83
193 194 6.090223 GGTTGTTTGGTTTGTGACTAACTTTG 59.910 38.462 9.55 0.00 0.00 2.77
194 195 6.160684 GGTTGTTTGGTTTGTGACTAACTTT 58.839 36.000 9.55 0.00 0.00 2.66
195 196 5.336929 GGGTTGTTTGGTTTGTGACTAACTT 60.337 40.000 9.55 0.00 0.00 2.66
196 197 4.158949 GGGTTGTTTGGTTTGTGACTAACT 59.841 41.667 9.55 0.00 0.00 2.24
197 198 4.158949 AGGGTTGTTTGGTTTGTGACTAAC 59.841 41.667 1.25 1.25 0.00 2.34
198 199 4.158764 CAGGGTTGTTTGGTTTGTGACTAA 59.841 41.667 0.00 0.00 0.00 2.24
199 200 3.697045 CAGGGTTGTTTGGTTTGTGACTA 59.303 43.478 0.00 0.00 0.00 2.59
200 201 2.495669 CAGGGTTGTTTGGTTTGTGACT 59.504 45.455 0.00 0.00 0.00 3.41
201 202 2.494073 TCAGGGTTGTTTGGTTTGTGAC 59.506 45.455 0.00 0.00 0.00 3.67
202 203 2.808919 TCAGGGTTGTTTGGTTTGTGA 58.191 42.857 0.00 0.00 0.00 3.58
203 204 3.056179 ACTTCAGGGTTGTTTGGTTTGTG 60.056 43.478 0.00 0.00 0.00 3.33
204 205 3.169908 ACTTCAGGGTTGTTTGGTTTGT 58.830 40.909 0.00 0.00 0.00 2.83
205 206 3.885724 ACTTCAGGGTTGTTTGGTTTG 57.114 42.857 0.00 0.00 0.00 2.93
206 207 7.849322 ATAATACTTCAGGGTTGTTTGGTTT 57.151 32.000 0.00 0.00 0.00 3.27
207 208 8.943594 TTATAATACTTCAGGGTTGTTTGGTT 57.056 30.769 0.00 0.00 0.00 3.67
208 209 8.966868 CATTATAATACTTCAGGGTTGTTTGGT 58.033 33.333 0.00 0.00 0.00 3.67
209 210 8.413229 CCATTATAATACTTCAGGGTTGTTTGG 58.587 37.037 0.00 0.00 0.00 3.28
210 211 9.184523 TCCATTATAATACTTCAGGGTTGTTTG 57.815 33.333 0.00 0.00 0.00 2.93
211 212 9.185680 GTCCATTATAATACTTCAGGGTTGTTT 57.814 33.333 0.00 0.00 0.00 2.83
212 213 8.333235 TGTCCATTATAATACTTCAGGGTTGTT 58.667 33.333 0.00 0.00 0.00 2.83
213 214 7.867921 TGTCCATTATAATACTTCAGGGTTGT 58.132 34.615 0.00 0.00 0.00 3.32
214 215 8.621286 GTTGTCCATTATAATACTTCAGGGTTG 58.379 37.037 0.00 0.00 0.00 3.77
215 216 8.333235 TGTTGTCCATTATAATACTTCAGGGTT 58.667 33.333 0.00 0.00 0.00 4.11
216 217 7.867921 TGTTGTCCATTATAATACTTCAGGGT 58.132 34.615 0.00 0.00 0.00 4.34
217 218 8.746052 TTGTTGTCCATTATAATACTTCAGGG 57.254 34.615 0.00 0.00 0.00 4.45
225 226 8.212312 ACACGGGTATTGTTGTCCATTATAATA 58.788 33.333 0.00 0.00 0.00 0.98
343 344 4.713824 TGTGCACAGACTAGTGTATACC 57.286 45.455 17.42 0.00 41.52 2.73
422 423 5.740569 CACTTCGACATATTTTGGAGCATTG 59.259 40.000 0.00 0.00 0.00 2.82
444 448 2.483013 GGGCTTTGAAAGTGAAACCCAC 60.483 50.000 11.27 0.00 46.03 4.61
493 497 7.095355 GCGTTCTTTGACCTGATCTTTTTACTA 60.095 37.037 0.00 0.00 0.00 1.82
581 585 8.540507 ACATCTTAGCATATTATAGGACGGAT 57.459 34.615 0.00 0.00 0.00 4.18
645 649 9.756571 CTCTATCCCCTACTATAACATAACAGT 57.243 37.037 0.00 0.00 0.00 3.55
646 650 9.976776 TCTCTATCCCCTACTATAACATAACAG 57.023 37.037 0.00 0.00 0.00 3.16
672 676 9.021807 GCCCTAGAAAAATCTTTAAAACTACCT 57.978 33.333 0.00 0.00 0.00 3.08
713 717 1.797025 ACGTTCAGCCTCTACAAAGC 58.203 50.000 0.00 0.00 0.00 3.51
773 787 3.071479 TCGCCTGTTTATCTGTGTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
794 808 1.804326 GTGAACGACACGCGCCTAT 60.804 57.895 5.73 0.00 46.04 2.57
846 860 3.187058 GGAACCAATGCGATGCGT 58.813 55.556 0.00 0.00 0.00 5.24
916 3518 0.604243 CGTCAATTGGTGAACCGGGA 60.604 55.000 6.32 0.00 38.23 5.14
919 3521 0.887387 ACCCGTCAATTGGTGAACCG 60.887 55.000 5.42 0.00 38.23 4.44
968 3571 3.442625 GGAAGGTTTAAGAATGGGGAACG 59.557 47.826 0.00 0.00 0.00 3.95
1107 3727 0.169009 GCTAAGCAACAAGGGAAGCG 59.831 55.000 0.00 0.00 0.00 4.68
1135 3755 4.559862 ACAGGATTTCAAACGGATCTCT 57.440 40.909 0.00 0.00 0.00 3.10
1149 3769 9.367160 TCCTTGAAAAAGAGAATAAACAGGATT 57.633 29.630 0.00 0.00 0.00 3.01
1306 3926 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
1307 3927 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
1308 3928 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
1309 3929 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
1310 3930 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
1311 3931 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
1312 3932 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
1313 3933 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
1314 3934 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
1315 3935 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
1316 3936 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
1317 3937 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
1318 3938 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
1319 3939 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
1320 3940 1.151083 ATGGGATGGGATGGGATGGG 61.151 60.000 0.00 0.00 0.00 4.00
1321 3941 0.333993 GATGGGATGGGATGGGATGG 59.666 60.000 0.00 0.00 0.00 3.51
1322 3942 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
1323 3943 0.852683 GGGATGGGATGGGATGGGAT 60.853 60.000 0.00 0.00 0.00 3.85
1324 3944 1.465986 GGGATGGGATGGGATGGGA 60.466 63.158 0.00 0.00 0.00 4.37
1325 3945 1.779644 TGGGATGGGATGGGATGGG 60.780 63.158 0.00 0.00 0.00 4.00
1368 3997 1.891011 GCCCTCTTAACAACCCAAGGG 60.891 57.143 2.91 2.91 45.23 3.95
1371 4000 2.091555 AGTTGCCCTCTTAACAACCCAA 60.092 45.455 0.00 0.00 43.68 4.12
1373 4002 2.287977 AGTTGCCCTCTTAACAACCC 57.712 50.000 0.00 0.00 43.68 4.11
1399 4028 4.443457 GCAGAGCACATCCCAATTCTACTA 60.443 45.833 0.00 0.00 0.00 1.82
1400 4029 3.683847 GCAGAGCACATCCCAATTCTACT 60.684 47.826 0.00 0.00 0.00 2.57
1401 4030 2.615912 GCAGAGCACATCCCAATTCTAC 59.384 50.000 0.00 0.00 0.00 2.59
1408 4037 1.203441 AGGAAGCAGAGCACATCCCA 61.203 55.000 0.00 0.00 31.55 4.37
1505 4134 5.600484 TCTCCATCTCTATCTTGGGAGTTTC 59.400 44.000 0.00 0.00 41.98 2.78
1512 4141 6.430962 TCCATTTCTCCATCTCTATCTTGG 57.569 41.667 0.00 0.00 0.00 3.61
1513 4142 8.743085 TTTTCCATTTCTCCATCTCTATCTTG 57.257 34.615 0.00 0.00 0.00 3.02
1617 4246 0.526211 GTTGGGCGGACTGAATTTCC 59.474 55.000 0.00 0.00 0.00 3.13
1727 4375 3.998672 TCAACCGACGCCTGACCC 61.999 66.667 0.00 0.00 0.00 4.46
1769 4417 0.396435 TCCGATGCTTCCACAAGTGT 59.604 50.000 0.00 0.00 31.45 3.55
2071 5023 2.357760 TTTCCGTTTCCGCTCCCG 60.358 61.111 0.00 0.00 0.00 5.14
2072 5024 1.574702 CTGTTTCCGTTTCCGCTCCC 61.575 60.000 0.00 0.00 0.00 4.30
2132 5088 3.007182 TCCGTATTCGTTTCCACTTCCTT 59.993 43.478 0.00 0.00 35.01 3.36
2133 5089 2.564062 TCCGTATTCGTTTCCACTTCCT 59.436 45.455 0.00 0.00 35.01 3.36
2180 5136 0.037697 TTTGTATCAGCGTCCGCACT 60.038 50.000 14.70 0.45 44.88 4.40
2210 5166 0.037160 GGGGTCTTTTAGTTCCGGCA 59.963 55.000 0.00 0.00 0.00 5.69
2287 5243 5.578005 AAGGAGATCATCGAAAGACGTTA 57.422 39.130 0.00 0.00 46.97 3.18
2309 5265 1.594833 CAGGTAGTGCGGCTGGTTA 59.405 57.895 0.00 0.00 0.00 2.85
2325 5281 2.219875 ACTGTCCAGGTGCCTCCAG 61.220 63.158 0.00 7.25 39.02 3.86
2333 5289 3.231889 CTCGCTGCACTGTCCAGGT 62.232 63.158 0.20 0.00 0.00 4.00
2423 5379 0.034186 GTGGCCCAACATCCAGATCA 60.034 55.000 0.00 0.00 32.15 2.92
2573 5534 5.835113 AACGGAATATTGTGGAATGGAAG 57.165 39.130 0.00 0.00 0.00 3.46
2686 5648 4.851558 CGCCTTGAAAACATAGTTTAGCAC 59.148 41.667 0.00 0.00 0.00 4.40
2687 5649 4.517453 ACGCCTTGAAAACATAGTTTAGCA 59.483 37.500 0.00 0.00 0.00 3.49
2688 5650 5.043189 ACGCCTTGAAAACATAGTTTAGC 57.957 39.130 0.00 0.00 0.00 3.09
2689 5651 5.313623 CGACGCCTTGAAAACATAGTTTAG 58.686 41.667 0.00 0.00 0.00 1.85
2690 5652 4.377635 GCGACGCCTTGAAAACATAGTTTA 60.378 41.667 9.14 0.00 0.00 2.01
2691 5653 3.608474 GCGACGCCTTGAAAACATAGTTT 60.608 43.478 9.14 0.00 0.00 2.66
3524 6498 8.665643 AAGCATCAAAATGTTTTCTTCATCAA 57.334 26.923 0.00 0.00 33.04 2.57
3553 6527 1.896465 CCTACTGCCAGATAGCTACCC 59.104 57.143 0.00 0.00 0.00 3.69
3608 6582 3.181500 ACACAGCTTCCAAAAACGTCTTC 60.181 43.478 0.00 0.00 0.00 2.87
3637 6611 9.062524 CCGTCCCATAATATAAGATGTTTTTGA 57.937 33.333 0.00 0.00 0.00 2.69
3692 6666 8.709308 ACCAGCTCACTAGATAGTTTCAATAAT 58.291 33.333 0.00 0.00 33.46 1.28
3699 6673 7.661536 TCATTACCAGCTCACTAGATAGTTT 57.338 36.000 0.00 0.00 33.46 2.66
3737 6711 6.910995 ACTATACCTGACGATTATAGCACAC 58.089 40.000 0.00 0.00 31.50 3.82
3793 6767 4.564406 CCAGCATGATCCCTAGAACCATAC 60.564 50.000 0.00 0.00 39.69 2.39
4147 7121 8.939929 CCATGAAGTAGTTGTGCTATTATATGG 58.060 37.037 0.00 0.00 31.50 2.74
4430 7405 4.047030 GCAATGAACTGCGCTTCG 57.953 55.556 9.73 0.00 31.50 3.79
4794 7777 5.012239 TGCACTCCAGAATCTAAAGCAAAT 58.988 37.500 0.00 0.00 0.00 2.32
4796 7779 4.019792 TGCACTCCAGAATCTAAAGCAA 57.980 40.909 0.00 0.00 0.00 3.91
4874 7857 7.496920 TGAGCCAGACAGAAAATGTATAAGATG 59.503 37.037 0.00 0.00 44.17 2.90
5158 8142 6.146673 CCATTCCAGTTTCTGCTTCATTTTTC 59.853 38.462 0.00 0.00 0.00 2.29
5349 8333 7.386848 GTGACAAGTTACTATCTAAAACTGGCA 59.613 37.037 0.00 0.00 33.85 4.92
5374 8358 6.182507 TGTGGTAGTTCTTATTTGTGAGGT 57.817 37.500 0.00 0.00 0.00 3.85
5393 8377 6.409704 TGAAATTAAGAGACTCCTGATGTGG 58.590 40.000 0.00 0.00 0.00 4.17
5468 8452 2.373169 ACCAAAGAGACCAGATGAGCAA 59.627 45.455 0.00 0.00 0.00 3.91
5505 8489 0.108472 TCTGAGATGGCGCAAGAGTG 60.108 55.000 10.83 0.00 43.02 3.51
5546 8530 2.676632 TACAGTCACCAAACGTGTGT 57.323 45.000 4.73 0.00 43.51 3.72
5552 8536 5.940470 AGAATCAAGGATACAGTCACCAAAC 59.060 40.000 0.00 0.00 41.41 2.93
5793 8777 6.421377 TCTTAACACGTATGTAGCTCGTTA 57.579 37.500 0.00 0.00 38.45 3.18
5849 8833 5.361285 GCAGACTGGACTCCTTTCTCTTATA 59.639 44.000 4.26 0.00 0.00 0.98
5884 8868 6.241207 ACAGTTGTTTTCTGATTGATACCG 57.759 37.500 0.00 0.00 36.81 4.02
5961 8945 3.244875 ACATTCTGCCACAGGACAACATA 60.245 43.478 0.00 0.00 31.51 2.29
5962 8946 2.165167 CATTCTGCCACAGGACAACAT 58.835 47.619 0.00 0.00 31.51 2.71
5963 8947 1.133823 ACATTCTGCCACAGGACAACA 60.134 47.619 0.00 0.00 31.51 3.33
5964 8948 1.537202 GACATTCTGCCACAGGACAAC 59.463 52.381 0.00 0.00 31.51 3.32
5965 8949 1.421268 AGACATTCTGCCACAGGACAA 59.579 47.619 0.00 0.00 31.51 3.18
5967 8951 1.808945 CAAGACATTCTGCCACAGGAC 59.191 52.381 0.00 0.00 31.51 3.85
5968 8952 1.421268 ACAAGACATTCTGCCACAGGA 59.579 47.619 0.00 0.00 31.51 3.86
6061 9076 9.810545 ACAACTAGCATCTCTTTTCTATCTAAC 57.189 33.333 0.00 0.00 0.00 2.34
6135 9150 4.022242 CGTGTCCTCGACTCCCATTATATT 60.022 45.833 0.00 0.00 33.15 1.28
6161 9176 1.459592 CCGTCCATTTCACGTCTTCAC 59.540 52.381 0.00 0.00 35.39 3.18
6162 9177 1.341852 TCCGTCCATTTCACGTCTTCA 59.658 47.619 0.00 0.00 35.39 3.02
6163 9178 1.993370 CTCCGTCCATTTCACGTCTTC 59.007 52.381 0.00 0.00 35.39 2.87
6164 9179 1.343465 ACTCCGTCCATTTCACGTCTT 59.657 47.619 0.00 0.00 35.39 3.01
6165 9180 0.966920 ACTCCGTCCATTTCACGTCT 59.033 50.000 0.00 0.00 35.39 4.18
6166 9181 1.068474 CACTCCGTCCATTTCACGTC 58.932 55.000 0.00 0.00 35.39 4.34
6167 9182 0.677288 TCACTCCGTCCATTTCACGT 59.323 50.000 0.00 0.00 35.39 4.49
6168 9183 1.459592 GTTCACTCCGTCCATTTCACG 59.540 52.381 0.00 0.00 36.99 4.35
6169 9184 2.767505 AGTTCACTCCGTCCATTTCAC 58.232 47.619 0.00 0.00 0.00 3.18
6170 9185 3.138304 CAAGTTCACTCCGTCCATTTCA 58.862 45.455 0.00 0.00 0.00 2.69
6171 9186 2.095718 GCAAGTTCACTCCGTCCATTTC 60.096 50.000 0.00 0.00 0.00 2.17
6231 9246 4.020218 TCATGGTGAAGTCGAATTCTCCTT 60.020 41.667 33.48 27.84 41.39 3.36
6343 9361 0.745486 CAAGTGATGCAGGCGATCCA 60.745 55.000 0.00 0.00 33.74 3.41
6355 9373 3.121030 GCGCCGCAGACAAGTGAT 61.121 61.111 3.15 0.00 0.00 3.06
6378 9396 0.670546 CGATGCAAAGGTCACCGTCT 60.671 55.000 0.00 0.00 0.00 4.18
6425 9443 4.457496 CACGGGCGCTGAGGACAT 62.457 66.667 7.64 0.00 0.00 3.06
6437 9455 1.335506 GCACATGTTTGGTTACACGGG 60.336 52.381 0.00 0.00 0.00 5.28
6597 9624 0.325296 TGCCACCTACTACCCCTCAG 60.325 60.000 0.00 0.00 0.00 3.35
6614 9641 2.909965 TTTCACCCCCAACGCTGC 60.910 61.111 0.00 0.00 0.00 5.25
6616 9643 2.203437 GGTTTCACCCCCAACGCT 60.203 61.111 0.00 0.00 30.04 5.07
6751 9778 2.047560 GGGCACACGTACCAGGAC 60.048 66.667 0.00 0.00 0.00 3.85
6821 9859 9.645059 CTACTGTATATGAGTAACAATCATGGG 57.355 37.037 0.00 0.00 37.91 4.00
6837 9875 9.656040 CAACTACTACTCGATCCTACTGTATAT 57.344 37.037 0.00 0.00 0.00 0.86
6842 9880 6.282167 TCTCAACTACTACTCGATCCTACTG 58.718 44.000 0.00 0.00 0.00 2.74
6843 9881 6.482898 TCTCAACTACTACTCGATCCTACT 57.517 41.667 0.00 0.00 0.00 2.57
6844 9882 5.178067 GCTCTCAACTACTACTCGATCCTAC 59.822 48.000 0.00 0.00 0.00 3.18
6845 9883 5.163332 TGCTCTCAACTACTACTCGATCCTA 60.163 44.000 0.00 0.00 0.00 2.94
6849 9887 5.238432 CAGATGCTCTCAACTACTACTCGAT 59.762 44.000 0.00 0.00 0.00 3.59
6850 9888 4.572795 CAGATGCTCTCAACTACTACTCGA 59.427 45.833 0.00 0.00 0.00 4.04
6852 9890 4.037446 CCCAGATGCTCTCAACTACTACTC 59.963 50.000 0.00 0.00 0.00 2.59
6855 9893 3.300388 CCCCAGATGCTCTCAACTACTA 58.700 50.000 0.00 0.00 0.00 1.82
6856 9894 2.114616 CCCCAGATGCTCTCAACTACT 58.885 52.381 0.00 0.00 0.00 2.57
6857 9895 1.474143 GCCCCAGATGCTCTCAACTAC 60.474 57.143 0.00 0.00 0.00 2.73
6858 9896 0.833287 GCCCCAGATGCTCTCAACTA 59.167 55.000 0.00 0.00 0.00 2.24
6859 9897 0.913451 AGCCCCAGATGCTCTCAACT 60.913 55.000 0.00 0.00 32.41 3.16
6860 9898 0.034670 AAGCCCCAGATGCTCTCAAC 60.035 55.000 0.00 0.00 38.34 3.18
6861 9899 0.700564 AAAGCCCCAGATGCTCTCAA 59.299 50.000 0.00 0.00 38.34 3.02
6862 9900 0.700564 AAAAGCCCCAGATGCTCTCA 59.299 50.000 0.00 0.00 38.34 3.27
6863 9901 2.717639 TAAAAGCCCCAGATGCTCTC 57.282 50.000 0.00 0.00 38.34 3.20
6864 9902 5.330648 AATATAAAAGCCCCAGATGCTCT 57.669 39.130 0.00 0.00 38.34 4.09
6865 9903 6.410942 AAAATATAAAAGCCCCAGATGCTC 57.589 37.500 0.00 0.00 38.34 4.26
6866 9904 6.838612 TGTAAAATATAAAAGCCCCAGATGCT 59.161 34.615 0.00 0.00 41.89 3.79
6867 9905 7.049799 TGTAAAATATAAAAGCCCCAGATGC 57.950 36.000 0.00 0.00 0.00 3.91
6869 9907 9.875708 TGTATGTAAAATATAAAAGCCCCAGAT 57.124 29.630 0.00 0.00 0.00 2.90
6870 9908 9.875708 ATGTATGTAAAATATAAAAGCCCCAGA 57.124 29.630 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.