Multiple sequence alignment - TraesCS4B01G170900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G170900 chr4B 100.000 6111 0 0 1 6111 374000180 373994070 0.000000e+00 11285.0
1 TraesCS4B01G170900 chr4B 97.778 45 1 0 2792 2836 373997276 373997232 1.830000e-10 78.7
2 TraesCS4B01G170900 chr4B 97.778 45 1 0 2905 2949 373997389 373997345 1.830000e-10 78.7
3 TraesCS4B01G170900 chr4D 93.517 2715 109 26 2 2678 300794204 300791519 0.000000e+00 3976.0
4 TraesCS4B01G170900 chr4D 90.735 1047 58 21 2834 3871 300791390 300790374 0.000000e+00 1360.0
5 TraesCS4B01G170900 chr4D 95.618 753 20 6 5368 6111 300788171 300787423 0.000000e+00 1195.0
6 TraesCS4B01G170900 chr4D 96.319 326 9 2 4960 5285 300788641 300788319 3.240000e-147 532.0
7 TraesCS4B01G170900 chr4D 84.144 473 32 16 4486 4952 300789593 300789158 9.470000e-113 418.0
8 TraesCS4B01G170900 chr4D 94.819 193 7 1 3970 4162 300790370 300790181 1.290000e-76 298.0
9 TraesCS4B01G170900 chr4D 83.594 128 6 4 2675 2795 300791494 300791375 8.380000e-19 106.0
10 TraesCS4B01G170900 chr4D 95.349 43 2 0 2794 2836 300791325 300791283 1.100000e-07 69.4
11 TraesCS4B01G170900 chr4D 94.737 38 1 1 4217 4253 300789314 300789277 2.380000e-04 58.4
12 TraesCS4B01G170900 chr4A 94.649 2224 61 15 1702 3871 182124577 182126796 0.000000e+00 3395.0
13 TraesCS4B01G170900 chr4A 90.566 1696 107 26 1 1668 182122903 182124573 0.000000e+00 2196.0
14 TraesCS4B01G170900 chr4A 92.651 762 20 14 5355 6097 182128480 182129224 0.000000e+00 1064.0
15 TraesCS4B01G170900 chr4A 89.224 464 34 8 4486 4941 182127114 182127569 3.200000e-157 566.0
16 TraesCS4B01G170900 chr4A 97.266 256 7 0 3965 4220 182126795 182127050 9.410000e-118 435.0
17 TraesCS4B01G170900 chr4A 93.605 172 8 2 4960 5131 182128025 182128193 2.830000e-63 254.0
18 TraesCS4B01G170900 chr4A 98.438 128 2 0 5157 5284 182128187 182128314 6.160000e-55 226.0
19 TraesCS4B01G170900 chr4A 95.652 46 1 1 2792 2836 182125807 182125852 8.500000e-09 73.1
20 TraesCS4B01G170900 chr4A 97.297 37 1 0 4217 4253 182127073 182127109 5.110000e-06 63.9
21 TraesCS4B01G170900 chr4A 96.970 33 0 1 4217 4248 182127424 182127456 3.000000e-03 54.7
22 TraesCS4B01G170900 chr4A 96.970 33 0 1 4217 4248 182127585 182127617 3.000000e-03 54.7
23 TraesCS4B01G170900 chr5D 87.226 548 61 8 1 543 499296799 499296256 3.130000e-172 616.0
24 TraesCS4B01G170900 chr5D 83.333 552 88 3 1 548 383586791 383587342 1.970000e-139 507.0
25 TraesCS4B01G170900 chr5D 94.595 111 6 0 3859 3969 262660509 262660619 8.140000e-39 172.0
26 TraesCS4B01G170900 chr7A 86.909 550 66 3 1 546 448189939 448189392 4.050000e-171 612.0
27 TraesCS4B01G170900 chr2A 83.666 551 86 3 1 547 425899771 425899221 3.270000e-142 516.0
28 TraesCS4B01G170900 chr2A 97.285 221 6 0 4257 4477 226553717 226553937 5.780000e-100 375.0
29 TraesCS4B01G170900 chr2A 96.875 224 5 2 4256 4477 239895425 239895202 2.080000e-99 374.0
30 TraesCS4B01G170900 chr6B 83.485 551 87 3 2 548 257595185 257595735 1.520000e-140 510.0
31 TraesCS4B01G170900 chr6B 96.460 226 7 1 4253 4477 664459021 664459246 7.480000e-99 372.0
32 TraesCS4B01G170900 chr7B 83.514 552 84 6 1 547 729024160 729024709 5.460000e-140 508.0
33 TraesCS4B01G170900 chr7B 95.413 109 5 0 3862 3970 372816672 372816564 2.260000e-39 174.0
34 TraesCS4B01G170900 chr6A 83.485 551 85 4 1 546 97697101 97696552 5.460000e-140 508.0
35 TraesCS4B01G170900 chr6A 93.966 116 6 1 3859 3973 444805132 444805247 2.260000e-39 174.0
36 TraesCS4B01G170900 chr2B 83.394 554 86 5 1 550 390802715 390802164 5.460000e-140 508.0
37 TraesCS4B01G170900 chr2B 97.248 109 3 0 3863 3971 397451386 397451494 1.050000e-42 185.0
38 TraesCS4B01G170900 chr2B 97.143 105 3 0 3864 3968 397939368 397939472 1.750000e-40 178.0
39 TraesCS4B01G170900 chr2B 96.330 109 1 2 3870 3975 584129402 584129510 6.300000e-40 176.0
40 TraesCS4B01G170900 chr2B 95.455 110 4 1 3869 3978 159487893 159488001 2.260000e-39 174.0
41 TraesCS4B01G170900 chr1A 98.206 223 3 1 4257 4478 530169969 530170191 7.430000e-104 388.0
42 TraesCS4B01G170900 chr1A 97.768 224 3 2 4257 4479 12264565 12264343 9.610000e-103 385.0
43 TraesCS4B01G170900 chr1A 94.628 242 8 5 4248 4486 588470347 588470108 2.690000e-98 370.0
44 TraesCS4B01G170900 chr5B 98.198 222 3 1 4257 4477 440262954 440262733 2.670000e-103 387.0
45 TraesCS4B01G170900 chr5B 96.190 105 4 0 3870 3974 370044289 370044185 8.140000e-39 172.0
46 TraesCS4B01G170900 chr5B 81.197 117 13 7 5917 6032 480241290 480241182 1.090000e-12 86.1
47 TraesCS4B01G170900 chr3B 97.285 221 5 1 4257 4477 614193898 614194117 2.080000e-99 374.0
48 TraesCS4B01G170900 chr1B 96.804 219 6 1 4257 4475 18688724 18688941 1.250000e-96 364.0
49 TraesCS4B01G170900 chr3D 94.643 112 4 2 3867 3977 23081171 23081281 8.140000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G170900 chr4B 373994070 374000180 6110 True 3814.133333 11285 98.518667 1 6111 3 chr4B.!!$R1 6110
1 TraesCS4B01G170900 chr4D 300787423 300794204 6781 True 890.311111 3976 92.092444 2 6111 9 chr4D.!!$R1 6109
2 TraesCS4B01G170900 chr4A 182122903 182129224 6321 False 762.036364 3395 94.844364 1 6097 11 chr4A.!!$F1 6096
3 TraesCS4B01G170900 chr5D 499296256 499296799 543 True 616.000000 616 87.226000 1 543 1 chr5D.!!$R1 542
4 TraesCS4B01G170900 chr5D 383586791 383587342 551 False 507.000000 507 83.333000 1 548 1 chr5D.!!$F2 547
5 TraesCS4B01G170900 chr7A 448189392 448189939 547 True 612.000000 612 86.909000 1 546 1 chr7A.!!$R1 545
6 TraesCS4B01G170900 chr2A 425899221 425899771 550 True 516.000000 516 83.666000 1 547 1 chr2A.!!$R2 546
7 TraesCS4B01G170900 chr6B 257595185 257595735 550 False 510.000000 510 83.485000 2 548 1 chr6B.!!$F1 546
8 TraesCS4B01G170900 chr7B 729024160 729024709 549 False 508.000000 508 83.514000 1 547 1 chr7B.!!$F1 546
9 TraesCS4B01G170900 chr6A 97696552 97697101 549 True 508.000000 508 83.485000 1 546 1 chr6A.!!$R1 545
10 TraesCS4B01G170900 chr2B 390802164 390802715 551 True 508.000000 508 83.394000 1 550 1 chr2B.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 214 0.608035 TGAAGCCGTGGCCCTAAAAG 60.608 55.000 7.39 0.0 43.17 2.27 F
1052 1078 0.250338 GAGGCAACCGAGGTGAAACT 60.250 55.000 0.00 0.0 34.17 2.66 F
1398 1441 3.001736 GCATAGGATTTGAAGCTCGTGTC 59.998 47.826 0.00 0.0 0.00 3.67 F
2367 2425 2.866762 GCTATTTGCTCTAACTCACCGG 59.133 50.000 0.00 0.0 38.95 5.28 F
4304 4951 0.105039 CGGATTAGCAGGTGAGACCC 59.895 60.000 0.00 0.0 39.75 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1268 1.002359 GGCTTAGCAGCTTAAATCGCC 60.002 52.381 6.53 0.0 46.44 5.54 R
2227 2285 0.035152 TGGCATGCACGAGGAGAAAT 60.035 50.000 21.36 0.0 0.00 2.17 R
2861 2954 3.226682 TCCAATATGCTAGCCATGCAA 57.773 42.857 13.29 0.0 44.01 4.08 R
4350 4997 0.034089 GATTTCAGGTGGGGGTGGAG 60.034 60.000 0.00 0.0 0.00 3.86 R
5349 6726 0.030235 GGCTTTCGGAACAACCACAC 59.970 55.000 0.00 0.0 38.90 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.740780 AGATTTCCATGAAGAGAGGGGA 58.259 45.455 0.00 0.00 0.00 4.81
70 71 3.546616 CGGGGTTTGTGAAACTTAACGTC 60.547 47.826 0.00 0.00 41.14 4.34
209 214 0.608035 TGAAGCCGTGGCCCTAAAAG 60.608 55.000 7.39 0.00 43.17 2.27
263 269 5.524281 TGCAACCGCATTATTATTAACTCGA 59.476 36.000 0.00 0.00 45.36 4.04
278 284 1.268899 ACTCGAATAATACGGAGGCGG 59.731 52.381 0.00 0.00 0.00 6.13
369 377 9.558396 TCATTTAGCTTGTGATTTTTCCATTTT 57.442 25.926 0.00 0.00 0.00 1.82
479 494 3.681897 CGAGGAGCCAAATAGTGATATGC 59.318 47.826 0.00 0.00 0.00 3.14
606 622 7.658575 GGGAATCACTAAAATTACAGCGGTATA 59.341 37.037 0.00 0.00 0.00 1.47
642 659 9.822185 AACTCTTTTTCTTTGAAGCATATTGTT 57.178 25.926 0.00 0.00 0.00 2.83
655 672 8.849168 TGAAGCATATTGTTCTCTTGAAAAAGA 58.151 29.630 0.00 0.00 33.39 2.52
722 742 1.079543 CCCAAGTCAGGCGAGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
758 780 2.995283 TCGTTTCCCGTCTGAGAGATA 58.005 47.619 0.00 0.00 37.94 1.98
804 826 7.378181 AGAGAGAGAAAGAAAGTTAAGAGCTG 58.622 38.462 0.00 0.00 0.00 4.24
868 890 1.212195 TCCCTCTCGCTGTAAGAGCTA 59.788 52.381 0.00 0.00 46.64 3.32
878 900 4.185394 GCTGTAAGAGCTAGAAACCCTTC 58.815 47.826 0.00 0.00 45.21 3.46
899 921 1.204941 CACCCGAAAATCCGTCTCTCT 59.795 52.381 0.00 0.00 0.00 3.10
1024 1050 1.067250 GACGAGGAGCAGATGGAGC 59.933 63.158 0.00 0.00 0.00 4.70
1038 1064 3.077556 GAGCGGAAGGAGGAGGCA 61.078 66.667 0.00 0.00 0.00 4.75
1052 1078 0.250338 GAGGCAACCGAGGTGAAACT 60.250 55.000 0.00 0.00 34.17 2.66
1214 1240 4.335315 GGGCGATCTGTTTGATTTGTATGA 59.665 41.667 0.00 0.00 35.14 2.15
1242 1268 5.065731 GGTTGAAGATGTCTAATCTGCAAGG 59.934 44.000 8.68 0.00 42.59 3.61
1398 1441 3.001736 GCATAGGATTTGAAGCTCGTGTC 59.998 47.826 0.00 0.00 0.00 3.67
1540 1583 4.041567 TCATGTTGGAGATAGTGGTGTTGT 59.958 41.667 0.00 0.00 0.00 3.32
1541 1584 4.431416 TGTTGGAGATAGTGGTGTTGTT 57.569 40.909 0.00 0.00 0.00 2.83
1542 1585 5.554437 TGTTGGAGATAGTGGTGTTGTTA 57.446 39.130 0.00 0.00 0.00 2.41
1543 1586 5.931294 TGTTGGAGATAGTGGTGTTGTTAA 58.069 37.500 0.00 0.00 0.00 2.01
1544 1587 5.761234 TGTTGGAGATAGTGGTGTTGTTAAC 59.239 40.000 0.00 0.00 0.00 2.01
1545 1588 5.818678 TGGAGATAGTGGTGTTGTTAACT 57.181 39.130 7.22 0.00 0.00 2.24
1546 1589 6.182507 TGGAGATAGTGGTGTTGTTAACTT 57.817 37.500 7.22 0.00 0.00 2.66
1547 1590 5.995282 TGGAGATAGTGGTGTTGTTAACTTG 59.005 40.000 7.22 0.00 0.00 3.16
1647 1691 5.154222 GTTGCCTTGTACTGAAATTACTGC 58.846 41.667 0.00 0.00 0.00 4.40
1834 1878 5.565509 TGTATTTCCCTTGTCTTGTGCATA 58.434 37.500 0.00 0.00 0.00 3.14
1838 1882 3.411446 TCCCTTGTCTTGTGCATACTTG 58.589 45.455 0.00 0.00 0.00 3.16
2062 2112 3.197766 TGTTTTCAGTCACTGAGTCTGGT 59.802 43.478 7.75 0.00 41.75 4.00
2367 2425 2.866762 GCTATTTGCTCTAACTCACCGG 59.133 50.000 0.00 0.00 38.95 5.28
2816 2909 7.621428 TTTGATTGCATTCTTTTTGGTGAAA 57.379 28.000 9.81 0.00 0.00 2.69
2900 2993 3.055819 TGGATAGTGCTCAGTTGTTCCTC 60.056 47.826 0.00 0.00 0.00 3.71
3118 3212 7.473366 TGTGCAAAACGTAATTCTTCTTTGTA 58.527 30.769 6.87 0.66 0.00 2.41
3398 3516 8.753497 AAGTTTCCTTATTATTCCATGACCTC 57.247 34.615 0.00 0.00 0.00 3.85
3444 3562 9.528489 TTAAGTTTATGAGTCCTGGCTTTTTAT 57.472 29.630 0.00 0.00 0.00 1.40
3448 3566 2.819608 TGAGTCCTGGCTTTTTATGTGC 59.180 45.455 0.00 0.00 0.00 4.57
3524 3643 8.871686 ATCATTAGGTTGTTTCTGTTTTTGAC 57.128 30.769 0.00 0.00 0.00 3.18
3533 3652 7.222000 TGTTTCTGTTTTTGACTTGTAAGGT 57.778 32.000 0.00 0.00 0.00 3.50
3745 3874 6.042777 CGTATGAAGTATGATGGTCACTTGT 58.957 40.000 0.00 0.00 32.79 3.16
3781 3910 8.545420 GCTTTATATTTTTCTTGTGGCATGATG 58.455 33.333 0.00 0.00 0.00 3.07
3797 3926 3.593442 TGATGGTCCAATCATAACCCC 57.407 47.619 0.00 0.00 31.58 4.95
3806 3935 3.545703 CAATCATAACCCCGAGCTTCTT 58.454 45.455 0.00 0.00 0.00 2.52
3836 3965 4.674281 AGAGTAGCTCCTTATTTTCCCG 57.326 45.455 0.00 0.00 0.00 5.14
3855 3984 1.422531 GTGAGATGATGGGGAGAGCT 58.577 55.000 0.00 0.00 0.00 4.09
3871 4000 4.393371 GGAGAGCTGACACCAATTTTCTAC 59.607 45.833 0.00 0.00 0.00 2.59
3872 4001 5.234466 AGAGCTGACACCAATTTTCTACT 57.766 39.130 0.00 0.00 0.00 2.57
3873 4002 5.241662 AGAGCTGACACCAATTTTCTACTC 58.758 41.667 0.00 0.00 0.00 2.59
3874 4003 4.327680 AGCTGACACCAATTTTCTACTCC 58.672 43.478 0.00 0.00 0.00 3.85
3875 4004 3.440522 GCTGACACCAATTTTCTACTCCC 59.559 47.826 0.00 0.00 0.00 4.30
3876 4005 4.807643 GCTGACACCAATTTTCTACTCCCT 60.808 45.833 0.00 0.00 0.00 4.20
3877 4006 4.906618 TGACACCAATTTTCTACTCCCTC 58.093 43.478 0.00 0.00 0.00 4.30
3878 4007 4.262617 GACACCAATTTTCTACTCCCTCC 58.737 47.826 0.00 0.00 0.00 4.30
3879 4008 3.270877 CACCAATTTTCTACTCCCTCCG 58.729 50.000 0.00 0.00 0.00 4.63
3880 4009 2.910977 ACCAATTTTCTACTCCCTCCGT 59.089 45.455 0.00 0.00 0.00 4.69
3881 4010 3.055312 ACCAATTTTCTACTCCCTCCGTC 60.055 47.826 0.00 0.00 0.00 4.79
3882 4011 3.532542 CAATTTTCTACTCCCTCCGTCC 58.467 50.000 0.00 0.00 0.00 4.79
3883 4012 1.565067 TTTTCTACTCCCTCCGTCCC 58.435 55.000 0.00 0.00 0.00 4.46
3884 4013 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
3885 4014 0.410663 TTCTACTCCCTCCGTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
3886 4015 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
3887 4016 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
3888 4017 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
3889 4018 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3890 4019 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3891 4020 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3892 4021 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3893 4022 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3894 4023 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3895 4024 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3896 4025 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3897 4026 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3898 4027 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3899 4028 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
3900 4029 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
3901 4030 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
3902 4031 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
3903 4032 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3904 4033 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3905 4034 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3906 4035 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3907 4036 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3908 4037 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
3909 4038 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
3910 4039 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
3911 4040 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
3912 4041 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
3913 4042 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
3914 4043 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
3915 4044 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
3916 4045 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
3917 4046 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
3942 4071 8.123639 ACTAGAGCTAGTACAAAATTGAGACA 57.876 34.615 8.35 0.00 43.98 3.41
3943 4072 8.030106 ACTAGAGCTAGTACAAAATTGAGACAC 58.970 37.037 8.35 0.00 43.98 3.67
3944 4073 6.998802 AGAGCTAGTACAAAATTGAGACACT 58.001 36.000 0.00 1.09 0.00 3.55
3945 4074 7.445945 AGAGCTAGTACAAAATTGAGACACTT 58.554 34.615 0.00 0.00 0.00 3.16
3946 4075 8.585881 AGAGCTAGTACAAAATTGAGACACTTA 58.414 33.333 0.00 0.00 0.00 2.24
3947 4076 9.372369 GAGCTAGTACAAAATTGAGACACTTAT 57.628 33.333 0.00 0.00 0.00 1.73
3948 4077 9.726438 AGCTAGTACAAAATTGAGACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
3952 4081 9.965824 AGTACAAAATTGAGACACTTATTTTGG 57.034 29.630 21.75 9.08 45.43 3.28
3953 4082 9.191995 GTACAAAATTGAGACACTTATTTTGGG 57.808 33.333 21.75 10.11 45.43 4.12
3954 4083 8.017418 ACAAAATTGAGACACTTATTTTGGGA 57.983 30.769 21.75 0.00 45.43 4.37
3955 4084 7.926018 ACAAAATTGAGACACTTATTTTGGGAC 59.074 33.333 21.75 0.00 45.43 4.46
3956 4085 5.880054 ATTGAGACACTTATTTTGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
3957 4086 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3958 4087 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3959 4088 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3960 4089 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3961 4090 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3962 4091 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3963 4092 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3964 4093 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3965 4094 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3972 4101 2.504585 GGGACGGAGGGAGTATTTTCTT 59.495 50.000 0.00 0.00 0.00 2.52
3986 4115 6.287525 AGTATTTTCTTATCTCTCAGCTGCC 58.712 40.000 9.47 0.00 0.00 4.85
4253 4900 9.788889 TGATCAATCTTATGAGAACTTATGCAT 57.211 29.630 3.79 3.79 35.07 3.96
4256 4903 7.386025 TCAATCTTATGAGAACTTATGCATCCG 59.614 37.037 0.19 0.00 35.07 4.18
4257 4904 5.541845 TCTTATGAGAACTTATGCATCCGG 58.458 41.667 0.19 0.00 0.00 5.14
4258 4905 5.304357 TCTTATGAGAACTTATGCATCCGGA 59.696 40.000 6.61 6.61 0.00 5.14
4259 4906 3.904800 TGAGAACTTATGCATCCGGAA 57.095 42.857 9.01 0.00 0.00 4.30
4260 4907 4.214986 TGAGAACTTATGCATCCGGAAA 57.785 40.909 9.01 0.00 0.00 3.13
4261 4908 4.584874 TGAGAACTTATGCATCCGGAAAA 58.415 39.130 9.01 0.00 0.00 2.29
4262 4909 5.007034 TGAGAACTTATGCATCCGGAAAAA 58.993 37.500 9.01 0.00 0.00 1.94
4290 4937 3.383162 AGACCAGGTCTCACGGATT 57.617 52.632 17.31 0.00 38.71 3.01
4291 4938 2.526888 AGACCAGGTCTCACGGATTA 57.473 50.000 17.31 0.00 38.71 1.75
4292 4939 2.379972 AGACCAGGTCTCACGGATTAG 58.620 52.381 17.31 0.00 38.71 1.73
4293 4940 0.824759 ACCAGGTCTCACGGATTAGC 59.175 55.000 0.00 0.00 0.00 3.09
4294 4941 0.824109 CCAGGTCTCACGGATTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
4295 4942 1.202463 CCAGGTCTCACGGATTAGCAG 60.202 57.143 0.00 0.00 0.00 4.24
4296 4943 1.115467 AGGTCTCACGGATTAGCAGG 58.885 55.000 0.00 0.00 0.00 4.85
4297 4944 0.824759 GGTCTCACGGATTAGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
4298 4945 1.471676 GGTCTCACGGATTAGCAGGTG 60.472 57.143 0.00 0.00 0.00 4.00
4299 4946 1.476891 GTCTCACGGATTAGCAGGTGA 59.523 52.381 0.00 0.00 37.77 4.02
4301 4948 1.847328 TCACGGATTAGCAGGTGAGA 58.153 50.000 0.00 0.00 34.71 3.27
4302 4949 1.476891 TCACGGATTAGCAGGTGAGAC 59.523 52.381 0.00 0.00 34.71 3.36
4303 4950 0.824759 ACGGATTAGCAGGTGAGACC 59.175 55.000 0.00 0.00 38.99 3.85
4304 4951 0.105039 CGGATTAGCAGGTGAGACCC 59.895 60.000 0.00 0.00 39.75 4.46
4305 4952 1.204146 GGATTAGCAGGTGAGACCCA 58.796 55.000 0.00 0.00 39.75 4.51
4306 4953 1.771255 GGATTAGCAGGTGAGACCCAT 59.229 52.381 0.00 0.00 39.75 4.00
4307 4954 2.224402 GGATTAGCAGGTGAGACCCATC 60.224 54.545 0.00 0.00 39.75 3.51
4308 4955 1.204146 TTAGCAGGTGAGACCCATCC 58.796 55.000 0.00 0.00 39.75 3.51
4309 4956 0.339859 TAGCAGGTGAGACCCATCCT 59.660 55.000 0.00 0.00 39.75 3.24
4310 4957 1.222936 GCAGGTGAGACCCATCCTG 59.777 63.158 5.79 5.79 39.75 3.86
4311 4958 1.267574 GCAGGTGAGACCCATCCTGA 61.268 60.000 13.26 0.00 42.00 3.86
4312 4959 1.504912 CAGGTGAGACCCATCCTGAT 58.495 55.000 4.28 0.00 42.00 2.90
4313 4960 1.140452 CAGGTGAGACCCATCCTGATG 59.860 57.143 4.28 0.00 42.00 3.07
4325 4972 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
4326 4973 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
4327 4974 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
4343 4990 3.663995 TGGCATCCACAAATCACAAAG 57.336 42.857 0.00 0.00 0.00 2.77
4344 4991 2.288948 TGGCATCCACAAATCACAAAGC 60.289 45.455 0.00 0.00 0.00 3.51
4345 4992 2.288948 GGCATCCACAAATCACAAAGCA 60.289 45.455 0.00 0.00 0.00 3.91
4346 4993 3.592059 GCATCCACAAATCACAAAGCAT 58.408 40.909 0.00 0.00 0.00 3.79
4347 4994 3.615496 GCATCCACAAATCACAAAGCATC 59.385 43.478 0.00 0.00 0.00 3.91
4348 4995 3.940209 TCCACAAATCACAAAGCATCC 57.060 42.857 0.00 0.00 0.00 3.51
4349 4996 3.229293 TCCACAAATCACAAAGCATCCA 58.771 40.909 0.00 0.00 0.00 3.41
4350 4997 3.005684 TCCACAAATCACAAAGCATCCAC 59.994 43.478 0.00 0.00 0.00 4.02
4351 4998 3.006110 CCACAAATCACAAAGCATCCACT 59.994 43.478 0.00 0.00 0.00 4.00
4352 4999 4.232221 CACAAATCACAAAGCATCCACTC 58.768 43.478 0.00 0.00 0.00 3.51
4353 5000 3.256631 ACAAATCACAAAGCATCCACTCC 59.743 43.478 0.00 0.00 0.00 3.85
4354 5001 2.885135 ATCACAAAGCATCCACTCCA 57.115 45.000 0.00 0.00 0.00 3.86
4355 5002 1.896220 TCACAAAGCATCCACTCCAC 58.104 50.000 0.00 0.00 0.00 4.02
4356 5003 0.883833 CACAAAGCATCCACTCCACC 59.116 55.000 0.00 0.00 0.00 4.61
4357 5004 0.251341 ACAAAGCATCCACTCCACCC 60.251 55.000 0.00 0.00 0.00 4.61
4358 5005 0.967380 CAAAGCATCCACTCCACCCC 60.967 60.000 0.00 0.00 0.00 4.95
4359 5006 2.155197 AAAGCATCCACTCCACCCCC 62.155 60.000 0.00 0.00 0.00 5.40
4360 5007 3.338250 GCATCCACTCCACCCCCA 61.338 66.667 0.00 0.00 0.00 4.96
4361 5008 2.677228 CATCCACTCCACCCCCAC 59.323 66.667 0.00 0.00 0.00 4.61
4362 5009 2.614013 ATCCACTCCACCCCCACC 60.614 66.667 0.00 0.00 0.00 4.61
4363 5010 3.208342 ATCCACTCCACCCCCACCT 62.208 63.158 0.00 0.00 0.00 4.00
4364 5011 3.650950 CCACTCCACCCCCACCTG 61.651 72.222 0.00 0.00 0.00 4.00
4365 5012 2.529136 CACTCCACCCCCACCTGA 60.529 66.667 0.00 0.00 0.00 3.86
4366 5013 2.153401 CACTCCACCCCCACCTGAA 61.153 63.158 0.00 0.00 0.00 3.02
4367 5014 1.386772 ACTCCACCCCCACCTGAAA 60.387 57.895 0.00 0.00 0.00 2.69
4368 5015 0.776080 ACTCCACCCCCACCTGAAAT 60.776 55.000 0.00 0.00 0.00 2.17
4369 5016 0.034089 CTCCACCCCCACCTGAAATC 60.034 60.000 0.00 0.00 0.00 2.17
4370 5017 0.774096 TCCACCCCCACCTGAAATCA 60.774 55.000 0.00 0.00 0.00 2.57
4371 5018 0.323725 CCACCCCCACCTGAAATCAG 60.324 60.000 3.37 3.37 43.40 2.90
4394 5041 3.749226 GGGGGAGAGATTAGATGCTTTG 58.251 50.000 0.00 0.00 0.00 2.77
4395 5042 3.137360 GGGGGAGAGATTAGATGCTTTGT 59.863 47.826 0.00 0.00 0.00 2.83
4396 5043 4.133078 GGGGAGAGATTAGATGCTTTGTG 58.867 47.826 0.00 0.00 0.00 3.33
4397 5044 4.141620 GGGGAGAGATTAGATGCTTTGTGA 60.142 45.833 0.00 0.00 0.00 3.58
4398 5045 5.455899 GGGGAGAGATTAGATGCTTTGTGAT 60.456 44.000 0.00 0.00 0.00 3.06
4399 5046 6.060788 GGGAGAGATTAGATGCTTTGTGATT 58.939 40.000 0.00 0.00 0.00 2.57
4400 5047 6.545298 GGGAGAGATTAGATGCTTTGTGATTT 59.455 38.462 0.00 0.00 0.00 2.17
4401 5048 7.416022 GGAGAGATTAGATGCTTTGTGATTTG 58.584 38.462 0.00 0.00 0.00 2.32
4402 5049 7.066766 GGAGAGATTAGATGCTTTGTGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
4403 5050 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
4404 5051 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
4405 5052 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
4406 5053 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
4407 5054 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
4408 5055 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
4409 5056 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
4410 5057 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
4411 5058 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
4424 5071 4.642445 GAATGCCACATGTCATTCATCA 57.358 40.909 24.71 6.53 44.71 3.07
4425 5072 4.607955 GAATGCCACATGTCATTCATCAG 58.392 43.478 24.71 2.15 44.71 2.90
4426 5073 2.371306 TGCCACATGTCATTCATCAGG 58.629 47.619 0.00 0.00 34.09 3.86
4427 5074 1.679680 GCCACATGTCATTCATCAGGG 59.320 52.381 0.00 0.00 34.09 4.45
4428 5075 1.679680 CCACATGTCATTCATCAGGGC 59.320 52.381 0.00 0.00 34.09 5.19
4429 5076 1.332686 CACATGTCATTCATCAGGGCG 59.667 52.381 0.00 0.00 34.09 6.13
4430 5077 0.949397 CATGTCATTCATCAGGGCGG 59.051 55.000 0.00 0.00 34.09 6.13
4431 5078 0.179009 ATGTCATTCATCAGGGCGGG 60.179 55.000 0.00 0.00 29.76 6.13
4432 5079 1.224592 GTCATTCATCAGGGCGGGT 59.775 57.895 0.00 0.00 0.00 5.28
4433 5080 0.815615 GTCATTCATCAGGGCGGGTC 60.816 60.000 0.00 0.00 0.00 4.46
4434 5081 0.982852 TCATTCATCAGGGCGGGTCT 60.983 55.000 0.00 0.00 0.00 3.85
4435 5082 0.533755 CATTCATCAGGGCGGGTCTC 60.534 60.000 0.00 0.00 0.00 3.36
4436 5083 0.982852 ATTCATCAGGGCGGGTCTCA 60.983 55.000 0.00 0.00 0.00 3.27
4437 5084 1.899437 TTCATCAGGGCGGGTCTCAC 61.899 60.000 0.00 0.00 0.00 3.51
4438 5085 3.083997 ATCAGGGCGGGTCTCACC 61.084 66.667 0.00 0.00 37.60 4.02
4439 5086 3.625632 ATCAGGGCGGGTCTCACCT 62.626 63.158 0.00 0.00 38.64 4.00
4452 5099 6.672266 GGGTCTCACCTGATTTATATGAGA 57.328 41.667 0.00 0.00 42.63 3.27
4456 5103 7.295322 TCTCACCTGATTTATATGAGACCTG 57.705 40.000 0.00 0.00 40.59 4.00
4457 5104 6.268617 TCTCACCTGATTTATATGAGACCTGG 59.731 42.308 0.00 0.00 40.59 4.45
4458 5105 5.905331 TCACCTGATTTATATGAGACCTGGT 59.095 40.000 0.00 0.00 0.00 4.00
4459 5106 6.042093 TCACCTGATTTATATGAGACCTGGTC 59.958 42.308 19.20 19.20 0.00 4.02
4460 5107 6.042552 CACCTGATTTATATGAGACCTGGTCT 59.957 42.308 28.70 28.70 46.42 3.85
4529 5176 8.415950 TTTTATTTGACCCAGCTTCAATCTAA 57.584 30.769 0.30 0.80 33.03 2.10
4538 5185 8.829373 ACCCAGCTTCAATCTAATCTTTTATT 57.171 30.769 0.00 0.00 0.00 1.40
4663 5310 8.735692 TGTGATAATAATTGCAACATCTGAGA 57.264 30.769 0.00 0.00 0.00 3.27
4664 5311 8.833493 TGTGATAATAATTGCAACATCTGAGAG 58.167 33.333 0.00 0.00 0.00 3.20
4728 5375 5.982890 AGCTAAACATGGTGTTATTTGCT 57.017 34.783 0.00 0.00 40.14 3.91
4756 5403 8.644374 TTTTATTAGCTAAACATGGTGTCCTT 57.356 30.769 10.85 0.00 0.00 3.36
4757 5404 7.624360 TTATTAGCTAAACATGGTGTCCTTG 57.376 36.000 10.85 1.06 35.21 3.61
4758 5405 2.795329 AGCTAAACATGGTGTCCTTGG 58.205 47.619 0.00 0.00 33.63 3.61
4759 5406 1.202348 GCTAAACATGGTGTCCTTGGC 59.798 52.381 0.00 0.00 33.63 4.52
4760 5407 2.795329 CTAAACATGGTGTCCTTGGCT 58.205 47.619 0.00 0.00 33.63 4.75
4763 5410 1.303888 CATGGTGTCCTTGGCTGCT 60.304 57.895 0.00 0.00 0.00 4.24
4764 5411 0.896940 CATGGTGTCCTTGGCTGCTT 60.897 55.000 0.00 0.00 0.00 3.91
4765 5412 0.698238 ATGGTGTCCTTGGCTGCTTA 59.302 50.000 0.00 0.00 0.00 3.09
4766 5413 0.036732 TGGTGTCCTTGGCTGCTTAG 59.963 55.000 0.00 0.00 0.00 2.18
4930 5742 3.500343 ACTTGGCTTGTGGCTTTTCTAT 58.500 40.909 0.00 0.00 41.46 1.98
4949 5761 2.214387 TCTATGATGAGCTGCACACG 57.786 50.000 0.90 0.00 0.00 4.49
4952 5764 0.800631 ATGATGAGCTGCACACGTTG 59.199 50.000 0.90 0.00 0.00 4.10
4953 5765 0.249826 TGATGAGCTGCACACGTTGA 60.250 50.000 0.90 0.00 0.00 3.18
4954 5766 0.867746 GATGAGCTGCACACGTTGAA 59.132 50.000 0.90 0.00 0.00 2.69
4955 5767 1.264020 GATGAGCTGCACACGTTGAAA 59.736 47.619 0.90 0.00 0.00 2.69
4956 5768 1.090728 TGAGCTGCACACGTTGAAAA 58.909 45.000 1.02 0.00 0.00 2.29
4957 5769 1.470494 TGAGCTGCACACGTTGAAAAA 59.530 42.857 1.02 0.00 0.00 1.94
4984 6306 6.071051 TGCAATTTAGGATTTTCTTGTACCCC 60.071 38.462 0.00 0.00 0.00 4.95
5017 6339 3.807622 ACCATACGCTAACCGATTGATTG 59.192 43.478 0.00 0.00 41.02 2.67
5109 6431 0.245539 CGTCGGAAGGCTGGAACTTA 59.754 55.000 0.00 0.00 0.00 2.24
5110 6432 1.337447 CGTCGGAAGGCTGGAACTTAA 60.337 52.381 0.00 0.00 0.00 1.85
5150 6472 4.926238 GGATGCTCTATCAACGTAATCCAG 59.074 45.833 0.00 0.00 37.54 3.86
5285 6607 2.026822 TCTCAGAGGATCCAAGTTTGCC 60.027 50.000 15.82 0.00 33.66 4.52
5286 6608 1.988107 TCAGAGGATCCAAGTTTGCCT 59.012 47.619 15.82 0.00 33.66 4.75
5287 6609 2.376518 TCAGAGGATCCAAGTTTGCCTT 59.623 45.455 15.82 0.00 33.66 4.35
5288 6610 3.160269 CAGAGGATCCAAGTTTGCCTTT 58.840 45.455 15.82 0.00 33.66 3.11
5290 6612 4.039609 CAGAGGATCCAAGTTTGCCTTTTT 59.960 41.667 15.82 0.00 33.66 1.94
5321 6667 6.593382 AGTTTTAGTCATCTGCATGAGAAGAC 59.407 38.462 16.22 16.22 45.85 3.01
5337 6683 4.331968 AGAAGACTCTACCTGTCTGACTG 58.668 47.826 9.51 8.50 43.16 3.51
5339 6685 3.681593 AGACTCTACCTGTCTGACTGAC 58.318 50.000 15.25 5.57 42.46 3.51
5349 6726 3.153130 TGTCTGACTGACTGAAGAGAGG 58.847 50.000 9.51 0.00 45.54 3.69
5366 6783 1.602377 GAGGTGTGGTTGTTCCGAAAG 59.398 52.381 0.00 0.00 39.52 2.62
5406 6823 2.813908 CGACGGGCGAGAAAAGGG 60.814 66.667 0.00 0.00 44.57 3.95
5472 6889 4.392047 TGATAAGAGGATAAGCCGACGTA 58.608 43.478 0.00 0.00 43.43 3.57
5505 6922 1.276622 TTCTCCCTGACCCAAGCTAC 58.723 55.000 0.00 0.00 0.00 3.58
5513 6930 1.349688 TGACCCAAGCTACCAAACGAT 59.650 47.619 0.00 0.00 0.00 3.73
5528 6945 1.093159 ACGATTCGACCTAAGCTCGT 58.907 50.000 13.95 0.00 34.80 4.18
6108 7544 1.338105 CGCTGAAGACTTCCATCCACA 60.338 52.381 12.66 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.384191 GCCAGGGGACAAGACCATT 59.616 57.895 0.00 0.00 0.00 3.16
70 71 3.438087 AGTCATGGTCAAAAGAAGCATCG 59.562 43.478 0.00 0.00 32.78 3.84
227 232 1.742831 GCGGTTGCATCATGTCCTTTA 59.257 47.619 0.00 0.00 42.15 1.85
263 269 1.000938 GTCGACCGCCTCCGTATTATT 60.001 52.381 3.51 0.00 0.00 1.40
278 284 1.275291 TCCTTCCTTCATGGTGTCGAC 59.725 52.381 9.11 9.11 37.07 4.20
642 659 5.422012 ACAGGCCTTTTTCTTTTTCAAGAGA 59.578 36.000 0.00 0.00 40.28 3.10
722 742 1.944032 ACGATGGGCCGTATTTGTAC 58.056 50.000 0.00 0.00 41.44 2.90
758 780 0.534873 ACTTGTTTGCCAGGCGTTTT 59.465 45.000 7.03 0.00 0.00 2.43
804 826 1.402062 GGTAGGGTTTCAGTCGTCGAC 60.402 57.143 17.70 17.70 0.00 4.20
868 890 0.848053 TTTCGGGTGGAAGGGTTTCT 59.152 50.000 0.00 0.00 35.70 2.52
878 900 0.249398 AGAGACGGATTTTCGGGTGG 59.751 55.000 0.00 0.00 0.00 4.61
899 921 0.838554 TCAGATCGGGTTGGTTGGGA 60.839 55.000 0.00 0.00 0.00 4.37
1024 1050 2.269241 GGTTGCCTCCTCCTTCCG 59.731 66.667 0.00 0.00 0.00 4.30
1038 1064 2.599677 AGAGAGAGTTTCACCTCGGTT 58.400 47.619 0.00 0.00 36.56 4.44
1052 1078 3.192422 CAGAGCGAAAAGGAGAAGAGAGA 59.808 47.826 0.00 0.00 0.00 3.10
1214 1240 6.660521 TGCAGATTAGACATCTTCAACCAAAT 59.339 34.615 0.00 0.00 0.00 2.32
1242 1268 1.002359 GGCTTAGCAGCTTAAATCGCC 60.002 52.381 6.53 0.00 46.44 5.54
1398 1441 1.133253 CGGACTGCTGTTCAATGCG 59.867 57.895 2.65 0.00 28.14 4.73
1446 1489 5.018539 TCTACTTACAGGCATACGCAAAT 57.981 39.130 0.00 0.00 41.24 2.32
1540 1583 5.575157 TGGCAGGGATTCATAACAAGTTAA 58.425 37.500 0.00 0.00 0.00 2.01
1541 1584 5.186256 TGGCAGGGATTCATAACAAGTTA 57.814 39.130 0.00 0.00 0.00 2.24
1542 1585 4.046286 TGGCAGGGATTCATAACAAGTT 57.954 40.909 0.00 0.00 0.00 2.66
1543 1586 3.737559 TGGCAGGGATTCATAACAAGT 57.262 42.857 0.00 0.00 0.00 3.16
1544 1587 3.181497 CGTTGGCAGGGATTCATAACAAG 60.181 47.826 0.00 0.00 0.00 3.16
1545 1588 2.752354 CGTTGGCAGGGATTCATAACAA 59.248 45.455 0.00 0.00 0.00 2.83
1546 1589 2.026729 TCGTTGGCAGGGATTCATAACA 60.027 45.455 0.00 0.00 0.00 2.41
1547 1590 2.639065 TCGTTGGCAGGGATTCATAAC 58.361 47.619 0.00 0.00 0.00 1.89
1699 1743 6.041069 CGTCTTCTTCCCACCTCTTCTATTAT 59.959 42.308 0.00 0.00 0.00 1.28
1700 1744 5.360144 CGTCTTCTTCCCACCTCTTCTATTA 59.640 44.000 0.00 0.00 0.00 0.98
1704 1748 1.896465 CGTCTTCTTCCCACCTCTTCT 59.104 52.381 0.00 0.00 0.00 2.85
1803 1847 2.497273 ACAAGGGAAATACAAGCATGGC 59.503 45.455 0.00 0.00 0.00 4.40
2062 2112 1.841302 ATCCCACGAAGCTTGCCTCA 61.841 55.000 2.10 0.00 0.00 3.86
2211 2261 9.655769 CGAGGAGAAATATGACAACATAATTTG 57.344 33.333 0.00 0.00 41.46 2.32
2226 2276 1.209261 TGGCATGCACGAGGAGAAATA 59.791 47.619 21.36 0.00 0.00 1.40
2227 2285 0.035152 TGGCATGCACGAGGAGAAAT 60.035 50.000 21.36 0.00 0.00 2.17
2303 2361 3.978687 ACAGTACTTTCAACCGAGTGAG 58.021 45.455 0.00 0.00 0.00 3.51
2367 2425 5.262588 AGTTCCACCTGAAATTTGAACAC 57.737 39.130 15.24 0.00 35.68 3.32
2759 2852 5.107453 ACGAAGAACTAAATCAAGAAGCACG 60.107 40.000 0.00 0.00 0.00 5.34
2797 2890 5.096443 AGGTTTCACCAAAAAGAATGCAA 57.904 34.783 0.00 0.00 41.95 4.08
2816 2909 7.961326 AAAATAAACAGCCTGATGATTAGGT 57.039 32.000 5.09 0.00 37.64 3.08
2861 2954 3.226682 TCCAATATGCTAGCCATGCAA 57.773 42.857 13.29 0.00 44.01 4.08
2900 2993 8.231837 CACCAAAAAGAATGCAATCAAAATAGG 58.768 33.333 4.25 1.54 0.00 2.57
3398 3516 1.338020 AGCCAAAAAGGAGCAGAAACG 59.662 47.619 0.00 0.00 41.22 3.60
3521 3640 9.398538 ACAACAATAACTAAACCTTACAAGTCA 57.601 29.630 0.00 0.00 0.00 3.41
3524 3643 7.322699 CGCACAACAATAACTAAACCTTACAAG 59.677 37.037 0.00 0.00 0.00 3.16
3533 3652 3.304794 GGGCACGCACAACAATAACTAAA 60.305 43.478 0.00 0.00 0.00 1.85
3605 3725 8.345565 CCAACCTATATATTCAAAGCAGAACAC 58.654 37.037 0.00 0.00 0.00 3.32
3669 3789 7.059156 CCATGAGAGAAACTTGGAAGGATTAT 58.941 38.462 0.00 0.00 35.48 1.28
3745 3874 9.434420 CAAGAAAAATATAAAGCCCATTCACAA 57.566 29.630 0.00 0.00 0.00 3.33
3754 3883 7.041107 TCATGCCACAAGAAAAATATAAAGCC 58.959 34.615 0.00 0.00 0.00 4.35
3781 3910 1.814248 GCTCGGGGTTATGATTGGACC 60.814 57.143 0.00 0.00 0.00 4.46
3797 3926 1.063806 CTTCCACGTCAAGAAGCTCG 58.936 55.000 6.58 0.00 33.64 5.03
3806 3935 1.174783 GGAGCTACTCTTCCACGTCA 58.825 55.000 0.00 0.00 0.00 4.35
3836 3965 1.070445 CAGCTCTCCCCATCATCTCAC 59.930 57.143 0.00 0.00 0.00 3.51
3855 3984 4.263331 GGAGGGAGTAGAAAATTGGTGTCA 60.263 45.833 0.00 0.00 0.00 3.58
3871 4000 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3872 4001 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3873 4002 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3874 4003 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3875 4004 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3876 4005 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
3877 4006 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
3878 4007 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3879 4008 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3880 4009 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3881 4010 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3882 4011 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
3883 4012 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
3884 4013 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
3885 4014 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
3886 4015 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
3887 4016 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
3888 4017 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
3889 4018 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
3890 4019 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
3891 4020 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
3892 4021 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
3916 4045 9.239551 TGTCTCAATTTTGTACTAGCTCTAGTA 57.760 33.333 11.59 11.59 43.98 1.82
3918 4047 8.247562 AGTGTCTCAATTTTGTACTAGCTCTAG 58.752 37.037 0.00 2.55 39.04 2.43
3919 4048 8.123639 AGTGTCTCAATTTTGTACTAGCTCTA 57.876 34.615 0.00 0.00 0.00 2.43
3920 4049 6.998802 AGTGTCTCAATTTTGTACTAGCTCT 58.001 36.000 0.00 0.00 0.00 4.09
3921 4050 7.659652 AAGTGTCTCAATTTTGTACTAGCTC 57.340 36.000 0.00 0.00 0.00 4.09
3922 4051 9.726438 AATAAGTGTCTCAATTTTGTACTAGCT 57.274 29.630 0.00 0.00 0.00 3.32
3926 4055 9.965824 CCAAAATAAGTGTCTCAATTTTGTACT 57.034 29.630 14.67 0.00 43.14 2.73
3927 4056 9.191995 CCCAAAATAAGTGTCTCAATTTTGTAC 57.808 33.333 14.67 0.00 43.14 2.90
3928 4057 9.137459 TCCCAAAATAAGTGTCTCAATTTTGTA 57.863 29.630 14.67 4.20 43.14 2.41
3929 4058 7.926018 GTCCCAAAATAAGTGTCTCAATTTTGT 59.074 33.333 14.67 0.00 43.14 2.83
3930 4059 7.114811 CGTCCCAAAATAAGTGTCTCAATTTTG 59.885 37.037 10.80 10.80 43.77 2.44
3931 4060 7.145323 CGTCCCAAAATAAGTGTCTCAATTTT 58.855 34.615 0.00 0.00 33.07 1.82
3932 4061 6.294508 CCGTCCCAAAATAAGTGTCTCAATTT 60.295 38.462 0.00 0.00 0.00 1.82
3933 4062 5.183140 CCGTCCCAAAATAAGTGTCTCAATT 59.817 40.000 0.00 0.00 0.00 2.32
3934 4063 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
3935 4064 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3936 4065 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3937 4066 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3938 4067 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3939 4068 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3940 4069 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3941 4070 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3942 4071 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3943 4072 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3944 4073 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3945 4074 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3946 4075 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3947 4076 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3948 4077 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3949 4078 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3950 4079 1.835531 GAAAATACTCCCTCCGTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
3951 4080 2.117051 AGAAAATACTCCCTCCGTCCC 58.883 52.381 0.00 0.00 0.00 4.46
3952 4081 3.908643 AAGAAAATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
3953 4082 6.265876 AGAGATAAGAAAATACTCCCTCCGTC 59.734 42.308 0.00 0.00 0.00 4.79
3954 4083 6.137559 AGAGATAAGAAAATACTCCCTCCGT 58.862 40.000 0.00 0.00 0.00 4.69
3955 4084 6.265649 TGAGAGATAAGAAAATACTCCCTCCG 59.734 42.308 0.00 0.00 0.00 4.63
3956 4085 7.604657 TGAGAGATAAGAAAATACTCCCTCC 57.395 40.000 0.00 0.00 0.00 4.30
3957 4086 7.015195 AGCTGAGAGATAAGAAAATACTCCCTC 59.985 40.741 0.00 0.00 0.00 4.30
3958 4087 6.843861 AGCTGAGAGATAAGAAAATACTCCCT 59.156 38.462 0.00 0.00 0.00 4.20
3959 4088 6.928492 CAGCTGAGAGATAAGAAAATACTCCC 59.072 42.308 8.42 0.00 0.00 4.30
3960 4089 6.423604 GCAGCTGAGAGATAAGAAAATACTCC 59.576 42.308 20.43 0.00 0.00 3.85
3961 4090 6.423604 GGCAGCTGAGAGATAAGAAAATACTC 59.576 42.308 20.43 0.00 0.00 2.59
3962 4091 6.099557 AGGCAGCTGAGAGATAAGAAAATACT 59.900 38.462 20.43 0.00 0.00 2.12
3963 4092 6.287525 AGGCAGCTGAGAGATAAGAAAATAC 58.712 40.000 20.43 0.00 0.00 1.89
3964 4093 6.491714 AGGCAGCTGAGAGATAAGAAAATA 57.508 37.500 20.43 0.00 0.00 1.40
3965 4094 5.370875 AGGCAGCTGAGAGATAAGAAAAT 57.629 39.130 20.43 0.00 0.00 1.82
3972 4101 4.767578 AATCAAAGGCAGCTGAGAGATA 57.232 40.909 20.43 0.00 0.00 1.98
3986 4115 6.151648 TCCATTGAGCTTACAGGAAATCAAAG 59.848 38.462 0.00 0.00 30.59 2.77
4272 4919 2.379972 CTAATCCGTGAGACCTGGTCT 58.620 52.381 28.70 28.70 46.42 3.85
4273 4920 1.202428 GCTAATCCGTGAGACCTGGTC 60.202 57.143 19.20 19.20 0.00 4.02
4274 4921 0.824759 GCTAATCCGTGAGACCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
4275 4922 0.824109 TGCTAATCCGTGAGACCTGG 59.176 55.000 0.00 0.00 0.00 4.45
4276 4923 1.202463 CCTGCTAATCCGTGAGACCTG 60.202 57.143 0.00 0.00 0.00 4.00
4277 4924 1.115467 CCTGCTAATCCGTGAGACCT 58.885 55.000 0.00 0.00 0.00 3.85
4278 4925 0.824759 ACCTGCTAATCCGTGAGACC 59.175 55.000 0.00 0.00 0.00 3.85
4279 4926 1.476891 TCACCTGCTAATCCGTGAGAC 59.523 52.381 0.00 0.00 31.80 3.36
4280 4927 1.847328 TCACCTGCTAATCCGTGAGA 58.153 50.000 0.00 0.00 31.80 3.27
4281 4928 2.215907 CTCACCTGCTAATCCGTGAG 57.784 55.000 2.01 2.01 44.38 3.51
4282 4929 1.476891 GTCTCACCTGCTAATCCGTGA 59.523 52.381 0.00 0.00 34.26 4.35
4283 4930 1.471676 GGTCTCACCTGCTAATCCGTG 60.472 57.143 0.00 0.00 34.73 4.94
4284 4931 0.824759 GGTCTCACCTGCTAATCCGT 59.175 55.000 0.00 0.00 34.73 4.69
4285 4932 0.105039 GGGTCTCACCTGCTAATCCG 59.895 60.000 0.00 0.00 38.64 4.18
4286 4933 1.204146 TGGGTCTCACCTGCTAATCC 58.796 55.000 0.00 0.00 38.64 3.01
4287 4934 2.224402 GGATGGGTCTCACCTGCTAATC 60.224 54.545 0.00 0.00 38.64 1.75
4288 4935 1.771255 GGATGGGTCTCACCTGCTAAT 59.229 52.381 0.00 0.00 38.64 1.73
4289 4936 1.204146 GGATGGGTCTCACCTGCTAA 58.796 55.000 0.00 0.00 38.64 3.09
4290 4937 0.339859 AGGATGGGTCTCACCTGCTA 59.660 55.000 0.00 0.00 38.64 3.49
4291 4938 1.081833 AGGATGGGTCTCACCTGCT 59.918 57.895 0.00 0.00 38.64 4.24
4292 4939 1.222936 CAGGATGGGTCTCACCTGC 59.777 63.158 7.99 0.00 42.30 4.85
4294 4941 1.504912 CATCAGGATGGGTCTCACCT 58.495 55.000 1.25 0.00 38.64 4.00
4307 4954 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
4308 4955 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
4309 4956 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
4310 4957 0.940126 GATGCCACGTGTCATCCATC 59.060 55.000 25.20 17.45 34.52 3.51
4311 4958 3.085208 GATGCCACGTGTCATCCAT 57.915 52.632 25.20 13.68 34.52 3.41
4312 4959 4.615901 GATGCCACGTGTCATCCA 57.384 55.556 25.20 9.83 34.52 3.41
4314 4961 2.089854 GTGGATGCCACGTGTCATC 58.910 57.895 27.01 27.01 44.95 2.92
4315 4962 4.301505 GTGGATGCCACGTGTCAT 57.698 55.556 12.59 12.59 44.95 3.06
4323 4970 2.288948 GCTTTGTGATTTGTGGATGCCA 60.289 45.455 0.00 0.00 0.00 4.92
4324 4971 2.288948 TGCTTTGTGATTTGTGGATGCC 60.289 45.455 0.00 0.00 0.00 4.40
4325 4972 3.029320 TGCTTTGTGATTTGTGGATGC 57.971 42.857 0.00 0.00 0.00 3.91
4326 4973 4.178540 GGATGCTTTGTGATTTGTGGATG 58.821 43.478 0.00 0.00 0.00 3.51
4327 4974 3.833650 TGGATGCTTTGTGATTTGTGGAT 59.166 39.130 0.00 0.00 0.00 3.41
4328 4975 3.005684 GTGGATGCTTTGTGATTTGTGGA 59.994 43.478 0.00 0.00 0.00 4.02
4329 4976 3.006110 AGTGGATGCTTTGTGATTTGTGG 59.994 43.478 0.00 0.00 0.00 4.17
4330 4977 4.232221 GAGTGGATGCTTTGTGATTTGTG 58.768 43.478 0.00 0.00 0.00 3.33
4331 4978 3.256631 GGAGTGGATGCTTTGTGATTTGT 59.743 43.478 0.00 0.00 0.00 2.83
4332 4979 3.256383 TGGAGTGGATGCTTTGTGATTTG 59.744 43.478 0.00 0.00 0.00 2.32
4333 4980 3.256631 GTGGAGTGGATGCTTTGTGATTT 59.743 43.478 0.00 0.00 0.00 2.17
4334 4981 2.821969 GTGGAGTGGATGCTTTGTGATT 59.178 45.455 0.00 0.00 0.00 2.57
4335 4982 2.440409 GTGGAGTGGATGCTTTGTGAT 58.560 47.619 0.00 0.00 0.00 3.06
4336 4983 1.545428 GGTGGAGTGGATGCTTTGTGA 60.545 52.381 0.00 0.00 0.00 3.58
4337 4984 0.883833 GGTGGAGTGGATGCTTTGTG 59.116 55.000 0.00 0.00 0.00 3.33
4338 4985 0.251341 GGGTGGAGTGGATGCTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
4339 4986 0.967380 GGGGTGGAGTGGATGCTTTG 60.967 60.000 0.00 0.00 0.00 2.77
4340 4987 1.384191 GGGGTGGAGTGGATGCTTT 59.616 57.895 0.00 0.00 0.00 3.51
4341 4988 2.616458 GGGGGTGGAGTGGATGCTT 61.616 63.158 0.00 0.00 0.00 3.91
4342 4989 3.017581 GGGGGTGGAGTGGATGCT 61.018 66.667 0.00 0.00 0.00 3.79
4343 4990 3.338250 TGGGGGTGGAGTGGATGC 61.338 66.667 0.00 0.00 0.00 3.91
4344 4991 2.677228 GTGGGGGTGGAGTGGATG 59.323 66.667 0.00 0.00 0.00 3.51
4345 4992 2.614013 GGTGGGGGTGGAGTGGAT 60.614 66.667 0.00 0.00 0.00 3.41
4346 4993 3.869934 AGGTGGGGGTGGAGTGGA 61.870 66.667 0.00 0.00 0.00 4.02
4347 4994 3.650950 CAGGTGGGGGTGGAGTGG 61.651 72.222 0.00 0.00 0.00 4.00
4348 4995 1.715019 TTTCAGGTGGGGGTGGAGTG 61.715 60.000 0.00 0.00 0.00 3.51
4349 4996 0.776080 ATTTCAGGTGGGGGTGGAGT 60.776 55.000 0.00 0.00 0.00 3.85
4350 4997 0.034089 GATTTCAGGTGGGGGTGGAG 60.034 60.000 0.00 0.00 0.00 3.86
4351 4998 0.774096 TGATTTCAGGTGGGGGTGGA 60.774 55.000 0.00 0.00 0.00 4.02
4352 4999 0.323725 CTGATTTCAGGTGGGGGTGG 60.324 60.000 0.00 0.00 40.20 4.61
4353 5000 3.271250 CTGATTTCAGGTGGGGGTG 57.729 57.895 0.00 0.00 40.20 4.61
4373 5020 3.137360 ACAAAGCATCTAATCTCTCCCCC 59.863 47.826 0.00 0.00 0.00 5.40
4374 5021 4.133078 CACAAAGCATCTAATCTCTCCCC 58.867 47.826 0.00 0.00 0.00 4.81
4375 5022 5.028549 TCACAAAGCATCTAATCTCTCCC 57.971 43.478 0.00 0.00 0.00 4.30
4376 5023 7.066766 ACAAATCACAAAGCATCTAATCTCTCC 59.933 37.037 0.00 0.00 0.00 3.71
4377 5024 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
4378 5025 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
4379 5026 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
4380 5027 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
4381 5028 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
4382 5029 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
4383 5030 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
4384 5031 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
4385 5032 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
4386 5033 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
4387 5034 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
4388 5035 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
4389 5036 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
4390 5037 4.977741 GTGGCATTCACAAATCACAAAG 57.022 40.909 0.00 0.00 45.39 2.77
4406 5053 2.371306 CCTGATGAATGACATGTGGCA 58.629 47.619 1.15 0.00 39.56 4.92
4407 5054 1.679680 CCCTGATGAATGACATGTGGC 59.320 52.381 1.15 0.00 39.56 5.01
4408 5055 1.679680 GCCCTGATGAATGACATGTGG 59.320 52.381 1.15 0.00 39.56 4.17
4409 5056 1.332686 CGCCCTGATGAATGACATGTG 59.667 52.381 1.15 0.00 39.56 3.21
4410 5057 1.671979 CGCCCTGATGAATGACATGT 58.328 50.000 0.00 0.00 39.56 3.21
4411 5058 0.949397 CCGCCCTGATGAATGACATG 59.051 55.000 0.00 0.00 39.56 3.21
4412 5059 0.179009 CCCGCCCTGATGAATGACAT 60.179 55.000 0.00 0.00 42.47 3.06
4413 5060 1.224315 CCCGCCCTGATGAATGACA 59.776 57.895 0.00 0.00 0.00 3.58
4414 5061 0.815615 GACCCGCCCTGATGAATGAC 60.816 60.000 0.00 0.00 0.00 3.06
4415 5062 0.982852 AGACCCGCCCTGATGAATGA 60.983 55.000 0.00 0.00 0.00 2.57
4416 5063 0.533755 GAGACCCGCCCTGATGAATG 60.534 60.000 0.00 0.00 0.00 2.67
4417 5064 0.982852 TGAGACCCGCCCTGATGAAT 60.983 55.000 0.00 0.00 0.00 2.57
4418 5065 1.612146 TGAGACCCGCCCTGATGAA 60.612 57.895 0.00 0.00 0.00 2.57
4419 5066 2.038813 TGAGACCCGCCCTGATGA 59.961 61.111 0.00 0.00 0.00 2.92
4420 5067 2.187946 GTGAGACCCGCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
4421 5068 3.083997 GGTGAGACCCGCCCTGAT 61.084 66.667 0.00 0.00 39.55 2.90
4422 5069 4.316823 AGGTGAGACCCGCCCTGA 62.317 66.667 0.00 0.00 46.65 3.86
4423 5070 4.087892 CAGGTGAGACCCGCCCTG 62.088 72.222 0.00 0.00 46.65 4.45
4424 5071 3.625632 ATCAGGTGAGACCCGCCCT 62.626 63.158 0.00 0.00 46.65 5.19
4425 5072 2.198304 AAATCAGGTGAGACCCGCCC 62.198 60.000 0.00 0.00 46.65 6.13
4426 5073 0.539986 TAAATCAGGTGAGACCCGCC 59.460 55.000 0.00 0.00 45.81 6.13
4427 5074 2.622064 ATAAATCAGGTGAGACCCGC 57.378 50.000 0.00 0.00 39.75 6.13
4428 5075 5.243954 TCTCATATAAATCAGGTGAGACCCG 59.756 44.000 0.00 0.00 40.06 5.28
4429 5076 6.672266 TCTCATATAAATCAGGTGAGACCC 57.328 41.667 0.00 0.00 40.06 4.46
4432 5079 6.268617 CCAGGTCTCATATAAATCAGGTGAGA 59.731 42.308 0.00 0.00 41.99 3.27
4433 5080 6.042552 ACCAGGTCTCATATAAATCAGGTGAG 59.957 42.308 0.00 0.00 38.07 3.51
4434 5081 5.905331 ACCAGGTCTCATATAAATCAGGTGA 59.095 40.000 0.00 0.00 0.00 4.02
4435 5082 6.042552 AGACCAGGTCTCATATAAATCAGGTG 59.957 42.308 17.31 0.00 38.71 4.00
4436 5083 6.146760 AGACCAGGTCTCATATAAATCAGGT 58.853 40.000 17.31 0.00 38.71 4.00
4437 5084 6.678568 AGACCAGGTCTCATATAAATCAGG 57.321 41.667 17.31 0.00 38.71 3.86
4470 5117 4.860802 TCCTCAGGATGCATAGGAAAAA 57.139 40.909 12.63 0.00 34.12 1.94
4482 5129 0.467384 CAGCGTTCCATCCTCAGGAT 59.533 55.000 0.00 0.00 44.21 3.24
4483 5130 1.900351 CAGCGTTCCATCCTCAGGA 59.100 57.895 0.00 0.00 35.55 3.86
4484 5131 1.817099 GCAGCGTTCCATCCTCAGG 60.817 63.158 0.00 0.00 0.00 3.86
4663 5310 6.091437 CGGAAGAACTATCGTACTGAAAACT 58.909 40.000 0.00 0.00 0.00 2.66
4664 5311 5.860716 ACGGAAGAACTATCGTACTGAAAAC 59.139 40.000 0.00 0.00 33.89 2.43
4738 5385 2.795329 CCAAGGACACCATGTTTAGCT 58.205 47.619 0.00 0.00 0.00 3.32
4739 5386 1.202348 GCCAAGGACACCATGTTTAGC 59.798 52.381 0.00 0.00 0.00 3.09
4740 5387 2.489329 CAGCCAAGGACACCATGTTTAG 59.511 50.000 0.00 0.00 0.00 1.85
4743 5390 1.181098 GCAGCCAAGGACACCATGTT 61.181 55.000 0.00 0.00 0.00 2.71
4744 5391 1.604593 GCAGCCAAGGACACCATGT 60.605 57.895 0.00 0.00 0.00 3.21
4745 5392 0.896940 AAGCAGCCAAGGACACCATG 60.897 55.000 0.00 0.00 0.00 3.66
4747 5394 0.036732 CTAAGCAGCCAAGGACACCA 59.963 55.000 0.00 0.00 0.00 4.17
4749 5396 1.160137 CACTAAGCAGCCAAGGACAC 58.840 55.000 0.00 0.00 0.00 3.67
4750 5397 0.606401 GCACTAAGCAGCCAAGGACA 60.606 55.000 0.00 0.00 44.79 4.02
4763 5410 5.674525 CAACTCATCATAGGAAGGCACTAA 58.325 41.667 0.00 0.00 38.49 2.24
4764 5411 4.443457 GCAACTCATCATAGGAAGGCACTA 60.443 45.833 0.00 0.00 38.49 2.74
4766 5413 2.615912 GCAACTCATCATAGGAAGGCAC 59.384 50.000 0.00 0.00 0.00 5.01
4772 5419 8.461222 CAATAAAGTTTGCAACTCATCATAGGA 58.539 33.333 0.00 0.00 41.91 2.94
4810 5457 6.346758 GCAGAAGCTTCTCATAAGATTGATCG 60.347 42.308 26.18 10.70 34.74 3.69
4930 5742 1.478105 ACGTGTGCAGCTCATCATAGA 59.522 47.619 0.00 0.00 0.00 1.98
4956 5768 9.435688 GGTACAAGAAAATCCTAAATTGCATTT 57.564 29.630 0.00 0.00 36.29 2.32
4957 5769 8.040727 GGGTACAAGAAAATCCTAAATTGCATT 58.959 33.333 0.00 0.00 0.00 3.56
4958 5770 7.364673 GGGGTACAAGAAAATCCTAAATTGCAT 60.365 37.037 0.00 0.00 0.00 3.96
4984 6306 6.025280 GGTTAGCGTATGGTTAAAACATGTG 58.975 40.000 0.00 0.00 0.00 3.21
5017 6339 5.163854 CGAACCACACTGATCAAGGTAAATC 60.164 44.000 8.64 3.94 31.10 2.17
5109 6431 1.512156 CCGCGCACTACCCAACTTTT 61.512 55.000 8.75 0.00 0.00 2.27
5110 6432 1.964373 CCGCGCACTACCCAACTTT 60.964 57.895 8.75 0.00 0.00 2.66
5150 6472 4.981389 TTGTTGTAAATCGGCAAATTGC 57.019 36.364 9.87 9.87 44.08 3.56
5290 6612 9.371136 CTCATGCAGATGACTAAAACTAGTAAA 57.629 33.333 0.00 0.00 34.71 2.01
5305 6651 4.341806 AGGTAGAGTCTTCTCATGCAGATG 59.658 45.833 0.00 0.00 42.66 2.90
5337 6683 2.103263 ACAACCACACCTCTCTTCAGTC 59.897 50.000 0.00 0.00 0.00 3.51
5339 6685 2.918712 ACAACCACACCTCTCTTCAG 57.081 50.000 0.00 0.00 0.00 3.02
5349 6726 0.030235 GGCTTTCGGAACAACCACAC 59.970 55.000 0.00 0.00 38.90 3.82
5386 6803 2.429571 TTTTCTCGCCCGTCGACG 60.430 61.111 30.33 30.33 43.16 5.12
5388 6805 2.260434 CCTTTTCTCGCCCGTCGA 59.740 61.111 0.00 0.00 46.29 4.20
5389 6806 2.775032 TTCCCTTTTCTCGCCCGTCG 62.775 60.000 0.00 0.00 40.15 5.12
5390 6807 0.604511 TTTCCCTTTTCTCGCCCGTC 60.605 55.000 0.00 0.00 0.00 4.79
5391 6808 0.037734 ATTTCCCTTTTCTCGCCCGT 59.962 50.000 0.00 0.00 0.00 5.28
5395 6812 1.745653 CCAGGATTTCCCTTTTCTCGC 59.254 52.381 0.00 0.00 44.85 5.03
5406 6823 3.068024 TGTGTTTCAGTTGCCAGGATTTC 59.932 43.478 0.00 0.00 0.00 2.17
5472 6889 0.833949 GGAGAAAGGGAAGAGGCGAT 59.166 55.000 0.00 0.00 0.00 4.58
5505 6922 2.603560 GAGCTTAGGTCGAATCGTTTGG 59.396 50.000 1.52 0.00 0.00 3.28
5528 6945 0.469144 GGTTGTGGAAAGGGAGGCAA 60.469 55.000 0.00 0.00 0.00 4.52
5657 7081 3.611674 TCGTGTTGGAGCGAGCCA 61.612 61.111 0.00 0.00 35.78 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.