Multiple sequence alignment - TraesCS4B01G168500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G168500 chr4B 100.000 2549 0 0 1 2549 368430940 368428392 0.000000e+00 4708
1 TraesCS4B01G168500 chr4B 95.604 91 4 0 1 91 634688679 634688589 2.040000e-31 147
2 TraesCS4B01G168500 chr2B 99.147 1992 13 4 560 2549 776222948 776224937 0.000000e+00 3581
3 TraesCS4B01G168500 chr2B 99.294 1982 12 2 569 2549 781094236 781096216 0.000000e+00 3581
4 TraesCS4B01G168500 chr6A 99.242 1980 13 2 571 2549 616131293 616133271 0.000000e+00 3572
5 TraesCS4B01G168500 chr5B 99.142 1982 16 1 569 2549 641128784 641126803 0.000000e+00 3565
6 TraesCS4B01G168500 chr5B 95.556 90 4 0 1 90 397306256 397306345 7.350000e-31 145
7 TraesCS4B01G168500 chr7A 99.191 1978 14 2 573 2549 39015367 39017343 0.000000e+00 3563
8 TraesCS4B01G168500 chr3B 99.192 1979 13 2 572 2549 702857656 702855680 0.000000e+00 3563
9 TraesCS4B01G168500 chr3B 76.817 289 52 6 88 373 416266636 416266912 5.680000e-32 148
10 TraesCS4B01G168500 chr3B 96.629 89 3 0 1 89 614643953 614643865 5.680000e-32 148
11 TraesCS4B01G168500 chr3A 99.191 1978 13 2 573 2549 54951917 54953892 0.000000e+00 3561
12 TraesCS4B01G168500 chr3A 99.091 1981 16 2 571 2549 9952655 9954635 0.000000e+00 3557
13 TraesCS4B01G168500 chr7B 99.141 1980 12 3 571 2549 202776913 202778888 0.000000e+00 3557
14 TraesCS4B01G168500 chr7B 95.556 90 4 0 1 90 344971260 344971171 7.350000e-31 145
15 TraesCS4B01G168500 chr4A 87.727 220 20 4 359 573 190821033 190821250 1.510000e-62 250
16 TraesCS4B01G168500 chr5D 83.267 251 39 3 95 343 542753684 542753435 7.090000e-56 228
17 TraesCS4B01G168500 chr5D 79.859 283 41 14 95 372 423513629 423513358 2.590000e-45 193
18 TraesCS4B01G168500 chr7D 81.185 287 47 6 92 373 628098580 628098296 9.180000e-55 224
19 TraesCS4B01G168500 chr7D 81.119 286 46 8 93 373 627684046 627683764 3.300000e-54 222
20 TraesCS4B01G168500 chr7D 80.903 288 47 8 91 373 628017496 628017212 1.190000e-53 220
21 TraesCS4B01G168500 chr7D 80.546 293 44 11 91 373 627942089 627941800 1.990000e-51 213
22 TraesCS4B01G168500 chr7D 79.861 288 50 8 91 373 627860250 627859966 1.200000e-48 204
23 TraesCS4B01G168500 chr7D 92.708 96 5 2 1 96 61649846 61649753 1.230000e-28 137
24 TraesCS4B01G168500 chr2D 84.772 197 30 0 93 289 606916188 606915992 5.560000e-47 198
25 TraesCS4B01G168500 chr2D 95.604 91 4 0 1 91 508304364 508304454 2.040000e-31 147
26 TraesCS4B01G168500 chr2D 94.505 91 5 0 1 91 535197301 535197391 9.510000e-30 141
27 TraesCS4B01G168500 chr4D 78.671 286 52 9 93 373 464516234 464516515 5.600000e-42 182
28 TraesCS4B01G168500 chr1D 96.512 86 3 0 1 86 398644134 398644219 2.640000e-30 143
29 TraesCS4B01G168500 chr1D 94.505 91 5 0 1 91 222929110 222929020 9.510000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G168500 chr4B 368428392 368430940 2548 True 4708 4708 100.000 1 2549 1 chr4B.!!$R1 2548
1 TraesCS4B01G168500 chr2B 776222948 776224937 1989 False 3581 3581 99.147 560 2549 1 chr2B.!!$F1 1989
2 TraesCS4B01G168500 chr2B 781094236 781096216 1980 False 3581 3581 99.294 569 2549 1 chr2B.!!$F2 1980
3 TraesCS4B01G168500 chr6A 616131293 616133271 1978 False 3572 3572 99.242 571 2549 1 chr6A.!!$F1 1978
4 TraesCS4B01G168500 chr5B 641126803 641128784 1981 True 3565 3565 99.142 569 2549 1 chr5B.!!$R1 1980
5 TraesCS4B01G168500 chr7A 39015367 39017343 1976 False 3563 3563 99.191 573 2549 1 chr7A.!!$F1 1976
6 TraesCS4B01G168500 chr3B 702855680 702857656 1976 True 3563 3563 99.192 572 2549 1 chr3B.!!$R2 1977
7 TraesCS4B01G168500 chr3A 54951917 54953892 1975 False 3561 3561 99.191 573 2549 1 chr3A.!!$F2 1976
8 TraesCS4B01G168500 chr3A 9952655 9954635 1980 False 3557 3557 99.091 571 2549 1 chr3A.!!$F1 1978
9 TraesCS4B01G168500 chr7B 202776913 202778888 1975 False 3557 3557 99.141 571 2549 1 chr7B.!!$F1 1978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.030101 CCACTTCTTTTCGCGCCAAA 59.970 50.0 0.0 0.0 0.0 3.28 F
355 356 0.034186 TGAGGGCTTGTTAGGGCATG 60.034 55.0 0.0 0.0 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1089 1091 0.036306 AAACCCTTCGATCAACGCCT 59.964 50.00 0.00 0.00 42.26 5.52 R
2020 2023 3.575256 AGCTGAGGCACATTTTTCATGAA 59.425 39.13 3.38 3.38 41.70 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.485976 TGCAACAAAGTTTTTATTAGCAAAGT 57.514 26.923 0.00 0.00 0.00 2.66
26 27 9.587772 TGCAACAAAGTTTTTATTAGCAAAGTA 57.412 25.926 0.00 0.00 0.00 2.24
40 41 8.644318 ATTAGCAAAGTAGTATGGAAGTAACG 57.356 34.615 0.00 0.00 0.00 3.18
41 42 5.416947 AGCAAAGTAGTATGGAAGTAACGG 58.583 41.667 0.00 0.00 0.00 4.44
42 43 5.046807 AGCAAAGTAGTATGGAAGTAACGGT 60.047 40.000 0.00 0.00 0.00 4.83
43 44 6.153340 AGCAAAGTAGTATGGAAGTAACGGTA 59.847 38.462 0.00 0.00 0.00 4.02
44 45 6.813152 GCAAAGTAGTATGGAAGTAACGGTAA 59.187 38.462 0.00 0.00 0.00 2.85
45 46 7.201470 GCAAAGTAGTATGGAAGTAACGGTAAC 60.201 40.741 0.00 0.00 0.00 2.50
46 47 7.466746 AAGTAGTATGGAAGTAACGGTAACA 57.533 36.000 0.00 0.00 0.00 2.41
47 48 7.093322 AGTAGTATGGAAGTAACGGTAACAG 57.907 40.000 0.00 0.00 0.00 3.16
48 49 5.990120 AGTATGGAAGTAACGGTAACAGT 57.010 39.130 0.00 0.00 0.00 3.55
49 50 5.717119 AGTATGGAAGTAACGGTAACAGTG 58.283 41.667 0.00 0.00 0.00 3.66
50 51 3.389925 TGGAAGTAACGGTAACAGTGG 57.610 47.619 0.00 0.00 0.00 4.00
51 52 2.071540 GGAAGTAACGGTAACAGTGGC 58.928 52.381 0.00 0.00 0.00 5.01
52 53 2.548493 GGAAGTAACGGTAACAGTGGCA 60.548 50.000 0.00 0.00 0.00 4.92
53 54 2.914695 AGTAACGGTAACAGTGGCAA 57.085 45.000 0.00 0.00 0.00 4.52
54 55 3.196939 AGTAACGGTAACAGTGGCAAA 57.803 42.857 0.00 0.00 0.00 3.68
55 56 3.543665 AGTAACGGTAACAGTGGCAAAA 58.456 40.909 0.00 0.00 0.00 2.44
56 57 3.562557 AGTAACGGTAACAGTGGCAAAAG 59.437 43.478 0.00 0.00 0.00 2.27
57 58 2.047002 ACGGTAACAGTGGCAAAAGT 57.953 45.000 0.00 0.00 0.00 2.66
58 59 1.673920 ACGGTAACAGTGGCAAAAGTG 59.326 47.619 0.00 0.00 0.00 3.16
59 60 1.944024 CGGTAACAGTGGCAAAAGTGA 59.056 47.619 0.00 0.00 0.00 3.41
60 61 2.286772 CGGTAACAGTGGCAAAAGTGAC 60.287 50.000 0.00 0.00 0.00 3.67
61 62 2.685897 GGTAACAGTGGCAAAAGTGACA 59.314 45.455 0.00 0.00 41.98 3.58
62 63 3.243068 GGTAACAGTGGCAAAAGTGACAG 60.243 47.826 0.00 0.00 46.05 3.51
63 64 2.128771 ACAGTGGCAAAAGTGACAGT 57.871 45.000 0.00 0.00 46.05 3.55
64 65 3.275617 ACAGTGGCAAAAGTGACAGTA 57.724 42.857 0.00 0.00 46.05 2.74
65 66 3.206150 ACAGTGGCAAAAGTGACAGTAG 58.794 45.455 0.00 0.00 46.05 2.57
66 67 2.031682 CAGTGGCAAAAGTGACAGTAGC 60.032 50.000 0.00 0.00 46.05 3.58
67 68 1.946768 GTGGCAAAAGTGACAGTAGCA 59.053 47.619 0.00 0.00 46.05 3.49
68 69 2.031682 GTGGCAAAAGTGACAGTAGCAG 60.032 50.000 0.00 0.00 46.05 4.24
69 70 2.222027 GGCAAAAGTGACAGTAGCAGT 58.778 47.619 0.00 0.00 30.49 4.40
70 71 2.618709 GGCAAAAGTGACAGTAGCAGTT 59.381 45.455 0.00 0.00 30.49 3.16
71 72 3.066760 GGCAAAAGTGACAGTAGCAGTTT 59.933 43.478 0.00 0.00 39.78 2.66
72 73 4.440112 GGCAAAAGTGACAGTAGCAGTTTT 60.440 41.667 0.00 0.00 45.03 2.43
74 75 5.897377 AAAAGTGACAGTAGCAGTTTTGT 57.103 34.783 0.00 0.00 43.47 2.83
75 76 6.995511 AAAAGTGACAGTAGCAGTTTTGTA 57.004 33.333 0.00 0.00 43.47 2.41
76 77 6.604735 AAAGTGACAGTAGCAGTTTTGTAG 57.395 37.500 0.00 0.00 35.89 2.74
77 78 5.277857 AGTGACAGTAGCAGTTTTGTAGT 57.722 39.130 0.00 0.00 0.00 2.73
78 79 5.050490 AGTGACAGTAGCAGTTTTGTAGTG 58.950 41.667 0.00 0.00 0.00 2.74
79 80 5.047847 GTGACAGTAGCAGTTTTGTAGTGA 58.952 41.667 0.00 0.00 0.00 3.41
80 81 5.696724 GTGACAGTAGCAGTTTTGTAGTGAT 59.303 40.000 0.00 0.00 0.00 3.06
81 82 6.202954 GTGACAGTAGCAGTTTTGTAGTGATT 59.797 38.462 0.00 0.00 0.00 2.57
82 83 6.202762 TGACAGTAGCAGTTTTGTAGTGATTG 59.797 38.462 0.00 0.00 0.00 2.67
83 84 6.055588 ACAGTAGCAGTTTTGTAGTGATTGT 58.944 36.000 0.00 0.00 0.00 2.71
84 85 7.214381 ACAGTAGCAGTTTTGTAGTGATTGTA 58.786 34.615 0.00 0.00 0.00 2.41
85 86 7.713507 ACAGTAGCAGTTTTGTAGTGATTGTAA 59.286 33.333 0.00 0.00 0.00 2.41
86 87 8.721478 CAGTAGCAGTTTTGTAGTGATTGTAAT 58.279 33.333 0.00 0.00 0.00 1.89
87 88 9.938280 AGTAGCAGTTTTGTAGTGATTGTAATA 57.062 29.630 0.00 0.00 0.00 0.98
89 90 8.848474 AGCAGTTTTGTAGTGATTGTAATAGT 57.152 30.769 0.00 0.00 0.00 2.12
90 91 8.721478 AGCAGTTTTGTAGTGATTGTAATAGTG 58.279 33.333 0.00 0.00 0.00 2.74
91 92 8.504005 GCAGTTTTGTAGTGATTGTAATAGTGT 58.496 33.333 0.00 0.00 0.00 3.55
92 93 9.811655 CAGTTTTGTAGTGATTGTAATAGTGTG 57.188 33.333 0.00 0.00 0.00 3.82
93 94 8.999431 AGTTTTGTAGTGATTGTAATAGTGTGG 58.001 33.333 0.00 0.00 0.00 4.17
94 95 6.978343 TTGTAGTGATTGTAATAGTGTGGC 57.022 37.500 0.00 0.00 0.00 5.01
95 96 6.043854 TGTAGTGATTGTAATAGTGTGGCA 57.956 37.500 0.00 0.00 0.00 4.92
96 97 6.106003 TGTAGTGATTGTAATAGTGTGGCAG 58.894 40.000 0.00 0.00 0.00 4.85
97 98 3.941483 AGTGATTGTAATAGTGTGGCAGC 59.059 43.478 0.00 0.00 0.00 5.25
98 99 3.065371 GTGATTGTAATAGTGTGGCAGCC 59.935 47.826 3.66 3.66 0.00 4.85
99 100 3.054434 TGATTGTAATAGTGTGGCAGCCT 60.054 43.478 14.15 0.00 0.00 4.58
100 101 3.433306 TTGTAATAGTGTGGCAGCCTT 57.567 42.857 14.15 0.00 0.00 4.35
101 102 2.710377 TGTAATAGTGTGGCAGCCTTG 58.290 47.619 14.15 0.00 0.00 3.61
102 103 2.017049 GTAATAGTGTGGCAGCCTTGG 58.983 52.381 14.15 0.00 0.00 3.61
111 112 3.846955 GCAGCCTTGGCATTGATTT 57.153 47.368 14.54 0.00 0.00 2.17
112 113 1.648504 GCAGCCTTGGCATTGATTTC 58.351 50.000 14.54 0.00 0.00 2.17
113 114 1.741394 GCAGCCTTGGCATTGATTTCC 60.741 52.381 14.54 0.00 0.00 3.13
114 115 0.819582 AGCCTTGGCATTGATTTCCG 59.180 50.000 14.54 0.00 0.00 4.30
115 116 0.807275 GCCTTGGCATTGATTTCCGC 60.807 55.000 6.79 0.00 0.00 5.54
116 117 0.526096 CCTTGGCATTGATTTCCGCG 60.526 55.000 0.00 0.00 0.00 6.46
117 118 0.526096 CTTGGCATTGATTTCCGCGG 60.526 55.000 22.12 22.12 0.00 6.46
118 119 1.943116 TTGGCATTGATTTCCGCGGG 61.943 55.000 27.83 7.44 0.00 6.13
119 120 2.118404 GGCATTGATTTCCGCGGGA 61.118 57.895 27.83 16.16 0.00 5.14
120 121 1.662438 GGCATTGATTTCCGCGGGAA 61.662 55.000 23.80 23.80 40.27 3.97
134 135 4.225497 GGAAACCAGGCGATGAGG 57.775 61.111 0.00 0.00 0.00 3.86
135 136 1.602237 GGAAACCAGGCGATGAGGA 59.398 57.895 0.00 0.00 0.00 3.71
136 137 0.744771 GGAAACCAGGCGATGAGGAC 60.745 60.000 0.00 0.00 0.00 3.85
137 138 1.079127 AAACCAGGCGATGAGGACG 60.079 57.895 0.00 0.00 0.00 4.79
138 139 1.541310 AAACCAGGCGATGAGGACGA 61.541 55.000 0.00 0.00 0.00 4.20
139 140 2.105128 CCAGGCGATGAGGACGAC 59.895 66.667 0.00 0.00 39.24 4.34
140 141 2.278206 CAGGCGATGAGGACGACG 60.278 66.667 0.00 0.00 44.04 5.12
141 142 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
142 143 2.044555 AGGCGATGAGGACGACGAA 61.045 57.895 0.00 0.00 44.04 3.85
143 144 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
144 145 1.586564 GCGATGAGGACGACGAAGG 60.587 63.158 0.00 0.00 0.00 3.46
145 146 1.586564 CGATGAGGACGACGAAGGC 60.587 63.158 0.00 0.00 0.00 4.35
146 147 1.586564 GATGAGGACGACGAAGGCG 60.587 63.158 0.00 0.00 44.79 5.52
147 148 2.938539 GATGAGGACGACGAAGGCGG 62.939 65.000 0.00 0.00 43.17 6.13
179 180 2.600470 GGCGGCCCCACTTCTTTT 60.600 61.111 8.12 0.00 0.00 2.27
180 181 2.636412 GGCGGCCCCACTTCTTTTC 61.636 63.158 8.12 0.00 0.00 2.29
181 182 2.978018 GCGGCCCCACTTCTTTTCG 61.978 63.158 0.00 0.00 0.00 3.46
182 183 2.962569 GGCCCCACTTCTTTTCGC 59.037 61.111 0.00 0.00 0.00 4.70
183 184 2.561373 GCCCCACTTCTTTTCGCG 59.439 61.111 0.00 0.00 0.00 5.87
184 185 2.561373 CCCCACTTCTTTTCGCGC 59.439 61.111 0.00 0.00 0.00 6.86
185 186 2.561373 CCCACTTCTTTTCGCGCC 59.439 61.111 0.00 0.00 0.00 6.53
186 187 2.258013 CCCACTTCTTTTCGCGCCA 61.258 57.895 0.00 0.00 0.00 5.69
187 188 1.652012 CCACTTCTTTTCGCGCCAA 59.348 52.632 0.00 0.00 0.00 4.52
188 189 0.030101 CCACTTCTTTTCGCGCCAAA 59.970 50.000 0.00 0.00 0.00 3.28
189 190 1.535015 CCACTTCTTTTCGCGCCAAAA 60.535 47.619 12.36 12.36 0.00 2.44
190 191 2.189342 CACTTCTTTTCGCGCCAAAAA 58.811 42.857 13.82 13.35 0.00 1.94
207 208 3.751479 AAAAATGTTTCCTCAGGCACC 57.249 42.857 0.00 0.00 0.00 5.01
208 209 1.632589 AAATGTTTCCTCAGGCACCC 58.367 50.000 0.00 0.00 0.00 4.61
209 210 0.251787 AATGTTTCCTCAGGCACCCC 60.252 55.000 0.00 0.00 0.00 4.95
210 211 2.035783 GTTTCCTCAGGCACCCCC 59.964 66.667 0.00 0.00 0.00 5.40
211 212 3.646715 TTTCCTCAGGCACCCCCG 61.647 66.667 0.00 0.00 39.21 5.73
233 234 4.404098 CCCCCAACGCGCTAGGTT 62.404 66.667 5.73 0.00 0.00 3.50
234 235 2.818274 CCCCAACGCGCTAGGTTC 60.818 66.667 5.73 0.00 0.00 3.62
235 236 3.186047 CCCAACGCGCTAGGTTCG 61.186 66.667 5.73 0.00 0.00 3.95
236 237 3.186047 CCAACGCGCTAGGTTCGG 61.186 66.667 5.73 3.59 0.00 4.30
237 238 3.849953 CAACGCGCTAGGTTCGGC 61.850 66.667 5.73 0.00 0.00 5.54
259 260 3.428282 GTCCGCCGGCGTCAAATT 61.428 61.111 43.12 0.00 37.81 1.82
260 261 3.122323 TCCGCCGGCGTCAAATTC 61.122 61.111 43.12 3.72 37.81 2.17
261 262 4.514569 CCGCCGGCGTCAAATTCG 62.515 66.667 43.12 24.12 37.81 3.34
262 263 4.514569 CGCCGGCGTCAAATTCGG 62.515 66.667 39.71 8.63 44.70 4.30
263 264 4.174129 GCCGGCGTCAAATTCGGG 62.174 66.667 12.58 0.00 42.43 5.14
264 265 4.174129 CCGGCGTCAAATTCGGGC 62.174 66.667 6.01 0.00 38.93 6.13
265 266 3.124921 CGGCGTCAAATTCGGGCT 61.125 61.111 0.00 0.00 0.00 5.19
266 267 2.686816 CGGCGTCAAATTCGGGCTT 61.687 57.895 0.00 0.00 0.00 4.35
267 268 1.363145 CGGCGTCAAATTCGGGCTTA 61.363 55.000 0.00 0.00 0.00 3.09
268 269 0.806241 GGCGTCAAATTCGGGCTTAA 59.194 50.000 0.00 0.00 0.00 1.85
269 270 1.466866 GGCGTCAAATTCGGGCTTAAC 60.467 52.381 0.00 0.00 0.00 2.01
270 271 1.466866 GCGTCAAATTCGGGCTTAACC 60.467 52.381 0.00 0.00 37.93 2.85
280 281 2.465860 GGGCTTAACCGGCAAAAATT 57.534 45.000 0.00 0.00 40.62 1.82
281 282 2.073056 GGGCTTAACCGGCAAAAATTG 58.927 47.619 0.00 0.00 40.62 2.32
282 283 2.073056 GGCTTAACCGGCAAAAATTGG 58.927 47.619 0.00 0.00 0.00 3.16
283 284 2.073056 GCTTAACCGGCAAAAATTGGG 58.927 47.619 0.00 0.00 0.00 4.12
284 285 2.549134 GCTTAACCGGCAAAAATTGGGT 60.549 45.455 0.00 0.00 0.00 4.51
285 286 3.734463 CTTAACCGGCAAAAATTGGGTT 58.266 40.909 0.00 8.25 43.08 4.11
286 287 2.719531 AACCGGCAAAAATTGGGTTT 57.280 40.000 0.00 0.00 37.72 3.27
287 288 2.248280 ACCGGCAAAAATTGGGTTTC 57.752 45.000 0.00 0.00 0.00 2.78
288 289 1.765904 ACCGGCAAAAATTGGGTTTCT 59.234 42.857 0.00 0.00 0.00 2.52
289 290 2.966516 ACCGGCAAAAATTGGGTTTCTA 59.033 40.909 0.00 0.00 0.00 2.10
290 291 3.006430 ACCGGCAAAAATTGGGTTTCTAG 59.994 43.478 0.00 0.00 0.00 2.43
291 292 3.584834 CGGCAAAAATTGGGTTTCTAGG 58.415 45.455 0.00 0.00 0.00 3.02
292 293 3.616317 CGGCAAAAATTGGGTTTCTAGGG 60.616 47.826 0.00 0.00 0.00 3.53
293 294 3.580895 GGCAAAAATTGGGTTTCTAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
294 295 4.225042 GGCAAAAATTGGGTTTCTAGGGAT 59.775 41.667 0.00 0.00 0.00 3.85
295 296 5.178061 GCAAAAATTGGGTTTCTAGGGATG 58.822 41.667 0.00 0.00 0.00 3.51
296 297 5.178061 CAAAAATTGGGTTTCTAGGGATGC 58.822 41.667 0.00 0.00 0.00 3.91
297 298 2.348411 ATTGGGTTTCTAGGGATGCG 57.652 50.000 0.00 0.00 0.00 4.73
298 299 1.281419 TTGGGTTTCTAGGGATGCGA 58.719 50.000 0.00 0.00 0.00 5.10
299 300 1.507140 TGGGTTTCTAGGGATGCGAT 58.493 50.000 0.00 0.00 0.00 4.58
300 301 1.843851 TGGGTTTCTAGGGATGCGATT 59.156 47.619 0.00 0.00 0.00 3.34
301 302 2.241176 TGGGTTTCTAGGGATGCGATTT 59.759 45.455 0.00 0.00 0.00 2.17
302 303 3.456644 TGGGTTTCTAGGGATGCGATTTA 59.543 43.478 0.00 0.00 0.00 1.40
303 304 4.080243 TGGGTTTCTAGGGATGCGATTTAA 60.080 41.667 0.00 0.00 0.00 1.52
304 305 4.275196 GGGTTTCTAGGGATGCGATTTAAC 59.725 45.833 0.00 0.00 0.00 2.01
305 306 5.123936 GGTTTCTAGGGATGCGATTTAACT 58.876 41.667 0.00 0.00 0.00 2.24
306 307 5.007724 GGTTTCTAGGGATGCGATTTAACTG 59.992 44.000 0.00 0.00 0.00 3.16
307 308 5.607939 TTCTAGGGATGCGATTTAACTGA 57.392 39.130 0.00 0.00 0.00 3.41
308 309 5.808366 TCTAGGGATGCGATTTAACTGAT 57.192 39.130 0.00 0.00 0.00 2.90
309 310 6.174720 TCTAGGGATGCGATTTAACTGATT 57.825 37.500 0.00 0.00 0.00 2.57
310 311 6.591935 TCTAGGGATGCGATTTAACTGATTT 58.408 36.000 0.00 0.00 0.00 2.17
311 312 7.054124 TCTAGGGATGCGATTTAACTGATTTT 58.946 34.615 0.00 0.00 0.00 1.82
312 313 6.136541 AGGGATGCGATTTAACTGATTTTC 57.863 37.500 0.00 0.00 0.00 2.29
313 314 4.970003 GGGATGCGATTTAACTGATTTTCG 59.030 41.667 0.00 0.00 0.00 3.46
314 315 5.220777 GGGATGCGATTTAACTGATTTTCGA 60.221 40.000 0.00 0.00 0.00 3.71
315 316 6.255215 GGATGCGATTTAACTGATTTTCGAA 58.745 36.000 0.00 0.00 0.00 3.71
316 317 6.412072 GGATGCGATTTAACTGATTTTCGAAG 59.588 38.462 0.00 0.00 0.00 3.79
317 318 5.627172 TGCGATTTAACTGATTTTCGAAGG 58.373 37.500 0.00 0.00 0.00 3.46
318 319 4.495828 GCGATTTAACTGATTTTCGAAGGC 59.504 41.667 0.00 0.00 0.00 4.35
319 320 4.723862 CGATTTAACTGATTTTCGAAGGCG 59.276 41.667 0.00 0.00 39.35 5.52
320 321 4.413495 TTTAACTGATTTTCGAAGGCGG 57.587 40.909 0.00 0.00 38.28 6.13
321 322 1.892209 AACTGATTTTCGAAGGCGGT 58.108 45.000 0.00 0.36 38.28 5.68
322 323 1.156736 ACTGATTTTCGAAGGCGGTG 58.843 50.000 0.00 0.00 38.28 4.94
323 324 0.179189 CTGATTTTCGAAGGCGGTGC 60.179 55.000 0.00 0.00 38.28 5.01
324 325 0.605319 TGATTTTCGAAGGCGGTGCT 60.605 50.000 0.00 0.00 38.28 4.40
325 326 1.338294 TGATTTTCGAAGGCGGTGCTA 60.338 47.619 0.00 0.00 38.28 3.49
326 327 1.735571 GATTTTCGAAGGCGGTGCTAA 59.264 47.619 0.00 0.00 38.28 3.09
327 328 1.595466 TTTTCGAAGGCGGTGCTAAA 58.405 45.000 0.00 0.00 38.28 1.85
328 329 1.595466 TTTCGAAGGCGGTGCTAAAA 58.405 45.000 0.00 0.00 38.28 1.52
329 330 1.595466 TTCGAAGGCGGTGCTAAAAA 58.405 45.000 0.00 0.00 38.28 1.94
330 331 1.153353 TCGAAGGCGGTGCTAAAAAG 58.847 50.000 0.00 0.00 38.28 2.27
331 332 0.168128 CGAAGGCGGTGCTAAAAAGG 59.832 55.000 0.00 0.00 0.00 3.11
332 333 0.526211 GAAGGCGGTGCTAAAAAGGG 59.474 55.000 0.00 0.00 0.00 3.95
333 334 1.532604 AAGGCGGTGCTAAAAAGGGC 61.533 55.000 0.00 0.00 0.00 5.19
334 335 2.571757 GCGGTGCTAAAAAGGGCC 59.428 61.111 0.00 0.00 0.00 5.80
335 336 1.977009 GCGGTGCTAAAAAGGGCCT 60.977 57.895 0.00 0.00 0.00 5.19
336 337 1.532604 GCGGTGCTAAAAAGGGCCTT 61.533 55.000 14.48 14.48 0.00 4.35
337 338 0.243636 CGGTGCTAAAAAGGGCCTTG 59.756 55.000 21.72 8.37 0.00 3.61
338 339 1.627864 GGTGCTAAAAAGGGCCTTGA 58.372 50.000 21.72 7.59 0.00 3.02
339 340 1.546029 GGTGCTAAAAAGGGCCTTGAG 59.454 52.381 21.72 17.83 0.00 3.02
340 341 1.546029 GTGCTAAAAAGGGCCTTGAGG 59.454 52.381 21.72 11.53 38.53 3.86
341 342 1.186200 GCTAAAAAGGGCCTTGAGGG 58.814 55.000 21.72 11.89 35.18 4.30
351 352 3.577389 CCTTGAGGGCTTGTTAGGG 57.423 57.895 0.00 0.00 0.00 3.53
352 353 0.681243 CCTTGAGGGCTTGTTAGGGC 60.681 60.000 0.00 0.00 0.00 5.19
353 354 0.038166 CTTGAGGGCTTGTTAGGGCA 59.962 55.000 0.00 0.00 0.00 5.36
354 355 0.704076 TTGAGGGCTTGTTAGGGCAT 59.296 50.000 0.00 0.00 0.00 4.40
355 356 0.034186 TGAGGGCTTGTTAGGGCATG 60.034 55.000 0.00 0.00 0.00 4.06
356 357 0.753111 GAGGGCTTGTTAGGGCATGG 60.753 60.000 0.00 0.00 0.00 3.66
357 358 1.000359 GGGCTTGTTAGGGCATGGT 60.000 57.895 0.00 0.00 0.00 3.55
358 359 0.614697 GGGCTTGTTAGGGCATGGTT 60.615 55.000 0.00 0.00 0.00 3.67
359 360 0.532115 GGCTTGTTAGGGCATGGTTG 59.468 55.000 0.00 0.00 0.00 3.77
360 361 0.532115 GCTTGTTAGGGCATGGTTGG 59.468 55.000 0.00 0.00 0.00 3.77
361 362 1.890573 GCTTGTTAGGGCATGGTTGGA 60.891 52.381 0.00 0.00 0.00 3.53
362 363 2.094675 CTTGTTAGGGCATGGTTGGAG 58.905 52.381 0.00 0.00 0.00 3.86
363 364 1.367346 TGTTAGGGCATGGTTGGAGA 58.633 50.000 0.00 0.00 0.00 3.71
364 365 1.922447 TGTTAGGGCATGGTTGGAGAT 59.078 47.619 0.00 0.00 0.00 2.75
365 366 2.301346 GTTAGGGCATGGTTGGAGATG 58.699 52.381 0.00 0.00 0.00 2.90
366 367 0.183492 TAGGGCATGGTTGGAGATGC 59.817 55.000 0.00 0.00 43.60 3.91
367 368 1.076485 GGGCATGGTTGGAGATGCT 60.076 57.895 0.00 0.00 43.77 3.79
368 369 1.105759 GGGCATGGTTGGAGATGCTC 61.106 60.000 0.00 0.00 43.77 4.26
369 370 0.106819 GGCATGGTTGGAGATGCTCT 60.107 55.000 0.00 0.00 43.77 4.09
370 371 1.684248 GGCATGGTTGGAGATGCTCTT 60.684 52.381 0.00 0.00 43.77 2.85
371 372 2.421952 GGCATGGTTGGAGATGCTCTTA 60.422 50.000 0.00 0.00 43.77 2.10
372 373 2.877168 GCATGGTTGGAGATGCTCTTAG 59.123 50.000 0.00 0.00 41.52 2.18
373 374 3.474600 CATGGTTGGAGATGCTCTTAGG 58.525 50.000 0.00 0.00 0.00 2.69
374 375 2.551270 TGGTTGGAGATGCTCTTAGGT 58.449 47.619 0.00 0.00 0.00 3.08
375 376 3.719871 TGGTTGGAGATGCTCTTAGGTA 58.280 45.455 0.00 0.00 0.00 3.08
376 377 3.706594 TGGTTGGAGATGCTCTTAGGTAG 59.293 47.826 0.00 0.00 0.00 3.18
377 378 3.070302 GGTTGGAGATGCTCTTAGGTAGG 59.930 52.174 0.00 0.00 0.00 3.18
378 379 2.964209 TGGAGATGCTCTTAGGTAGGG 58.036 52.381 0.00 0.00 0.00 3.53
379 380 2.252714 GGAGATGCTCTTAGGTAGGGG 58.747 57.143 0.00 0.00 0.00 4.79
380 381 1.621317 GAGATGCTCTTAGGTAGGGGC 59.379 57.143 0.00 0.00 0.00 5.80
381 382 1.062121 AGATGCTCTTAGGTAGGGGCA 60.062 52.381 0.00 0.00 37.39 5.36
382 383 1.346068 GATGCTCTTAGGTAGGGGCAG 59.654 57.143 0.00 0.00 36.81 4.85
383 384 0.691078 TGCTCTTAGGTAGGGGCAGG 60.691 60.000 0.00 0.00 32.37 4.85
384 385 0.398664 GCTCTTAGGTAGGGGCAGGA 60.399 60.000 0.00 0.00 0.00 3.86
385 386 1.415200 CTCTTAGGTAGGGGCAGGAC 58.585 60.000 0.00 0.00 0.00 3.85
386 387 1.016415 TCTTAGGTAGGGGCAGGACT 58.984 55.000 0.00 0.00 0.00 3.85
387 388 1.063114 TCTTAGGTAGGGGCAGGACTC 60.063 57.143 0.00 0.00 0.00 3.36
388 389 0.396695 TTAGGTAGGGGCAGGACTCG 60.397 60.000 0.00 0.00 0.00 4.18
389 390 1.578215 TAGGTAGGGGCAGGACTCGT 61.578 60.000 0.00 0.00 0.00 4.18
390 391 2.722201 GGTAGGGGCAGGACTCGTG 61.722 68.421 0.00 0.00 0.00 4.35
391 392 1.982938 GTAGGGGCAGGACTCGTGT 60.983 63.158 0.91 0.00 0.00 4.49
392 393 1.229082 TAGGGGCAGGACTCGTGTT 60.229 57.895 0.91 0.00 0.00 3.32
393 394 0.834687 TAGGGGCAGGACTCGTGTTT 60.835 55.000 0.91 0.00 0.00 2.83
394 395 1.228154 GGGGCAGGACTCGTGTTTT 60.228 57.895 0.91 0.00 0.00 2.43
395 396 1.235281 GGGGCAGGACTCGTGTTTTC 61.235 60.000 0.91 0.00 0.00 2.29
396 397 1.566018 GGGCAGGACTCGTGTTTTCG 61.566 60.000 0.91 0.00 0.00 3.46
397 398 1.566018 GGCAGGACTCGTGTTTTCGG 61.566 60.000 0.91 0.00 0.00 4.30
398 399 1.566018 GCAGGACTCGTGTTTTCGGG 61.566 60.000 0.91 0.00 37.33 5.14
399 400 1.301479 AGGACTCGTGTTTTCGGGC 60.301 57.895 0.00 0.00 34.33 6.13
400 401 2.664436 GGACTCGTGTTTTCGGGCG 61.664 63.158 0.00 0.00 34.33 6.13
401 402 1.952635 GACTCGTGTTTTCGGGCGT 60.953 57.895 0.00 0.00 34.33 5.68
402 403 1.493134 GACTCGTGTTTTCGGGCGTT 61.493 55.000 0.00 0.00 34.33 4.84
403 404 1.083015 CTCGTGTTTTCGGGCGTTG 60.083 57.895 0.00 0.00 0.00 4.10
404 405 1.492319 CTCGTGTTTTCGGGCGTTGA 61.492 55.000 0.00 0.00 0.00 3.18
405 406 1.088340 TCGTGTTTTCGGGCGTTGAA 61.088 50.000 0.00 0.00 0.00 2.69
406 407 0.656205 CGTGTTTTCGGGCGTTGAAG 60.656 55.000 0.00 0.00 0.00 3.02
407 408 0.933047 GTGTTTTCGGGCGTTGAAGC 60.933 55.000 0.00 0.00 0.00 3.86
415 416 2.946762 GCGTTGAAGCCTGGTCAC 59.053 61.111 0.00 0.00 0.00 3.67
416 417 1.598130 GCGTTGAAGCCTGGTCACT 60.598 57.895 0.00 0.00 0.00 3.41
417 418 1.569479 GCGTTGAAGCCTGGTCACTC 61.569 60.000 0.00 0.00 0.00 3.51
418 419 0.951040 CGTTGAAGCCTGGTCACTCC 60.951 60.000 0.00 0.00 0.00 3.85
419 420 0.398318 GTTGAAGCCTGGTCACTCCT 59.602 55.000 0.00 0.00 37.07 3.69
420 421 0.687354 TTGAAGCCTGGTCACTCCTC 59.313 55.000 0.00 0.00 37.07 3.71
421 422 0.471780 TGAAGCCTGGTCACTCCTCA 60.472 55.000 0.00 0.00 37.07 3.86
422 423 0.248843 GAAGCCTGGTCACTCCTCAG 59.751 60.000 0.00 0.00 37.07 3.35
423 424 0.472734 AAGCCTGGTCACTCCTCAGT 60.473 55.000 0.00 0.00 37.07 3.41
424 425 0.409876 AGCCTGGTCACTCCTCAGTA 59.590 55.000 0.00 0.00 37.07 2.74
425 426 1.007721 AGCCTGGTCACTCCTCAGTAT 59.992 52.381 0.00 0.00 37.07 2.12
426 427 1.410882 GCCTGGTCACTCCTCAGTATC 59.589 57.143 0.00 0.00 37.07 2.24
427 428 1.678627 CCTGGTCACTCCTCAGTATCG 59.321 57.143 0.00 0.00 37.07 2.92
428 429 1.678627 CTGGTCACTCCTCAGTATCGG 59.321 57.143 0.00 0.00 37.07 4.18
429 430 0.386113 GGTCACTCCTCAGTATCGGC 59.614 60.000 0.00 0.00 0.00 5.54
430 431 1.394618 GTCACTCCTCAGTATCGGCT 58.605 55.000 0.00 0.00 0.00 5.52
431 432 1.066303 GTCACTCCTCAGTATCGGCTG 59.934 57.143 0.00 0.00 37.81 4.85
432 433 1.064685 TCACTCCTCAGTATCGGCTGA 60.065 52.381 0.00 0.00 42.56 4.26
433 434 1.959985 CACTCCTCAGTATCGGCTGAT 59.040 52.381 13.70 13.70 43.61 2.90
434 435 1.959985 ACTCCTCAGTATCGGCTGATG 59.040 52.381 18.65 3.08 43.61 3.07
435 436 2.234143 CTCCTCAGTATCGGCTGATGA 58.766 52.381 18.65 7.70 43.61 2.92
436 437 2.625314 CTCCTCAGTATCGGCTGATGAA 59.375 50.000 18.65 0.00 43.61 2.57
437 438 3.031013 TCCTCAGTATCGGCTGATGAAA 58.969 45.455 18.65 0.00 43.61 2.69
438 439 3.126831 CCTCAGTATCGGCTGATGAAAC 58.873 50.000 18.65 8.50 43.61 2.78
439 440 3.126831 CTCAGTATCGGCTGATGAAACC 58.873 50.000 18.65 1.12 43.61 3.27
440 441 2.499693 TCAGTATCGGCTGATGAAACCA 59.500 45.455 18.65 0.00 40.23 3.67
441 442 3.055458 TCAGTATCGGCTGATGAAACCAA 60.055 43.478 18.65 0.00 40.23 3.67
442 443 3.689161 CAGTATCGGCTGATGAAACCAAA 59.311 43.478 18.65 0.00 38.70 3.28
443 444 4.336433 CAGTATCGGCTGATGAAACCAAAT 59.664 41.667 18.65 0.00 38.70 2.32
444 445 4.576463 AGTATCGGCTGATGAAACCAAATC 59.424 41.667 18.65 0.00 35.99 2.17
445 446 2.789213 TCGGCTGATGAAACCAAATCA 58.211 42.857 0.00 0.00 0.00 2.57
446 447 3.153130 TCGGCTGATGAAACCAAATCAA 58.847 40.909 0.00 0.00 32.60 2.57
447 448 3.571828 TCGGCTGATGAAACCAAATCAAA 59.428 39.130 0.00 0.00 32.60 2.69
448 449 4.038522 TCGGCTGATGAAACCAAATCAAAA 59.961 37.500 0.00 0.00 32.60 2.44
449 450 4.386652 CGGCTGATGAAACCAAATCAAAAG 59.613 41.667 0.00 0.00 32.60 2.27
450 451 5.299949 GGCTGATGAAACCAAATCAAAAGT 58.700 37.500 0.00 0.00 32.60 2.66
451 452 6.454795 GGCTGATGAAACCAAATCAAAAGTA 58.545 36.000 0.00 0.00 32.60 2.24
452 453 6.928492 GGCTGATGAAACCAAATCAAAAGTAA 59.072 34.615 0.00 0.00 32.60 2.24
453 454 7.440856 GGCTGATGAAACCAAATCAAAAGTAAA 59.559 33.333 0.00 0.00 32.60 2.01
454 455 8.490355 GCTGATGAAACCAAATCAAAAGTAAAG 58.510 33.333 0.00 0.00 32.60 1.85
455 456 9.748708 CTGATGAAACCAAATCAAAAGTAAAGA 57.251 29.630 0.00 0.00 32.60 2.52
467 468 7.875327 TCAAAAGTAAAGAATATAGGTGGGC 57.125 36.000 0.00 0.00 0.00 5.36
468 469 6.540914 TCAAAAGTAAAGAATATAGGTGGGCG 59.459 38.462 0.00 0.00 0.00 6.13
469 470 5.625568 AAGTAAAGAATATAGGTGGGCGT 57.374 39.130 0.00 0.00 0.00 5.68
470 471 4.957296 AGTAAAGAATATAGGTGGGCGTG 58.043 43.478 0.00 0.00 0.00 5.34
471 472 2.256117 AAGAATATAGGTGGGCGTGC 57.744 50.000 0.00 0.00 0.00 5.34
472 473 1.424638 AGAATATAGGTGGGCGTGCT 58.575 50.000 0.00 0.00 0.00 4.40
473 474 1.344763 AGAATATAGGTGGGCGTGCTC 59.655 52.381 0.00 0.00 0.00 4.26
474 475 1.070134 GAATATAGGTGGGCGTGCTCA 59.930 52.381 0.00 0.00 0.00 4.26
475 476 1.128200 ATATAGGTGGGCGTGCTCAA 58.872 50.000 0.00 0.00 0.00 3.02
476 477 0.464036 TATAGGTGGGCGTGCTCAAG 59.536 55.000 0.00 0.00 0.00 3.02
477 478 1.264749 ATAGGTGGGCGTGCTCAAGA 61.265 55.000 0.00 0.00 0.00 3.02
478 479 2.167398 TAGGTGGGCGTGCTCAAGAC 62.167 60.000 0.00 0.00 0.00 3.01
479 480 2.280797 GTGGGCGTGCTCAAGACA 60.281 61.111 0.00 0.00 0.00 3.41
480 481 1.672356 GTGGGCGTGCTCAAGACAT 60.672 57.895 0.00 0.00 0.00 3.06
481 482 1.672030 TGGGCGTGCTCAAGACATG 60.672 57.895 0.00 0.00 0.00 3.21
482 483 2.401766 GGGCGTGCTCAAGACATGG 61.402 63.158 0.00 0.00 0.00 3.66
483 484 2.482374 GCGTGCTCAAGACATGGC 59.518 61.111 0.00 0.00 0.00 4.40
484 485 2.327343 GCGTGCTCAAGACATGGCA 61.327 57.895 0.00 0.00 34.27 4.92
485 486 1.499056 CGTGCTCAAGACATGGCAC 59.501 57.895 0.00 6.89 45.22 5.01
486 487 1.878775 GTGCTCAAGACATGGCACC 59.121 57.895 0.00 0.00 44.06 5.01
487 488 0.607489 GTGCTCAAGACATGGCACCT 60.607 55.000 0.00 0.00 44.06 4.00
488 489 0.111061 TGCTCAAGACATGGCACCTT 59.889 50.000 0.00 0.00 32.52 3.50
489 490 0.807496 GCTCAAGACATGGCACCTTC 59.193 55.000 0.00 0.00 0.00 3.46
490 491 1.457346 CTCAAGACATGGCACCTTCC 58.543 55.000 0.00 0.00 0.00 3.46
491 492 1.004044 CTCAAGACATGGCACCTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
492 493 1.003580 TCAAGACATGGCACCTTCCTC 59.996 52.381 0.00 0.00 0.00 3.71
493 494 0.036010 AAGACATGGCACCTTCCTCG 60.036 55.000 0.00 0.00 0.00 4.63
494 495 1.450312 GACATGGCACCTTCCTCGG 60.450 63.158 0.00 0.00 0.00 4.63
495 496 2.185310 GACATGGCACCTTCCTCGGT 62.185 60.000 0.00 0.00 37.93 4.69
496 497 0.907704 ACATGGCACCTTCCTCGGTA 60.908 55.000 0.00 0.00 34.94 4.02
497 498 0.469917 CATGGCACCTTCCTCGGTAT 59.530 55.000 0.00 0.00 34.94 2.73
498 499 0.759346 ATGGCACCTTCCTCGGTATC 59.241 55.000 0.00 0.00 34.94 2.24
499 500 0.325296 TGGCACCTTCCTCGGTATCT 60.325 55.000 0.00 0.00 34.94 1.98
500 501 0.831307 GGCACCTTCCTCGGTATCTT 59.169 55.000 0.00 0.00 34.94 2.40
501 502 1.202545 GGCACCTTCCTCGGTATCTTC 60.203 57.143 0.00 0.00 34.94 2.87
502 503 1.202545 GCACCTTCCTCGGTATCTTCC 60.203 57.143 0.00 0.00 34.94 3.46
503 504 1.413077 CACCTTCCTCGGTATCTTCCC 59.587 57.143 0.00 0.00 34.94 3.97
504 505 0.674534 CCTTCCTCGGTATCTTCCCG 59.325 60.000 0.00 0.00 46.83 5.14
512 513 2.693267 GGTATCTTCCCGACAGCTTT 57.307 50.000 0.00 0.00 0.00 3.51
513 514 2.552031 GGTATCTTCCCGACAGCTTTC 58.448 52.381 0.00 0.00 0.00 2.62
514 515 2.168728 GGTATCTTCCCGACAGCTTTCT 59.831 50.000 0.00 0.00 0.00 2.52
515 516 2.682155 ATCTTCCCGACAGCTTTCTC 57.318 50.000 0.00 0.00 0.00 2.87
516 517 0.608640 TCTTCCCGACAGCTTTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
517 518 0.391793 CTTCCCGACAGCTTTCTCCC 60.392 60.000 0.00 0.00 0.00 4.30
518 519 2.125512 CCCGACAGCTTTCTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
519 520 2.125512 CCGACAGCTTTCTCCCGG 60.126 66.667 0.00 0.00 0.00 5.73
520 521 2.815647 CGACAGCTTTCTCCCGGC 60.816 66.667 0.00 0.00 0.00 6.13
521 522 2.436824 GACAGCTTTCTCCCGGCC 60.437 66.667 0.00 0.00 0.00 6.13
522 523 3.978571 GACAGCTTTCTCCCGGCCC 62.979 68.421 0.00 0.00 0.00 5.80
547 548 3.401095 GCGTGACGACCACACAAA 58.599 55.556 10.10 0.00 45.98 2.83
548 549 1.275657 GCGTGACGACCACACAAAG 59.724 57.895 10.10 0.00 45.98 2.77
549 550 1.149361 GCGTGACGACCACACAAAGA 61.149 55.000 10.10 0.00 45.98 2.52
550 551 0.852777 CGTGACGACCACACAAAGAG 59.147 55.000 0.00 0.00 45.98 2.85
551 552 1.801395 CGTGACGACCACACAAAGAGT 60.801 52.381 0.00 0.00 45.98 3.24
552 553 2.542205 CGTGACGACCACACAAAGAGTA 60.542 50.000 0.00 0.00 45.98 2.59
553 554 3.050619 GTGACGACCACACAAAGAGTAG 58.949 50.000 7.60 0.00 45.03 2.57
554 555 2.953648 TGACGACCACACAAAGAGTAGA 59.046 45.455 0.00 0.00 0.00 2.59
555 556 3.243301 TGACGACCACACAAAGAGTAGAC 60.243 47.826 0.00 0.00 0.00 2.59
556 557 2.035576 ACGACCACACAAAGAGTAGACC 59.964 50.000 0.00 0.00 0.00 3.85
557 558 2.035449 CGACCACACAAAGAGTAGACCA 59.965 50.000 0.00 0.00 0.00 4.02
558 559 3.391049 GACCACACAAAGAGTAGACCAC 58.609 50.000 0.00 0.00 0.00 4.16
579 580 6.069789 ACCACTCCCTTAAGAATTAGGGTTAC 60.070 42.308 10.29 0.00 45.57 2.50
2020 2023 8.987890 CCGTGATTTAAATCAAAGACCAAAATT 58.012 29.630 28.02 0.00 46.13 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.740239 CGTTACTTCCATACTACTTTGCTAATA 57.260 33.333 0.00 0.00 0.00 0.98
15 16 7.709613 CCGTTACTTCCATACTACTTTGCTAAT 59.290 37.037 0.00 0.00 0.00 1.73
16 17 7.037438 CCGTTACTTCCATACTACTTTGCTAA 58.963 38.462 0.00 0.00 0.00 3.09
17 18 6.153340 ACCGTTACTTCCATACTACTTTGCTA 59.847 38.462 0.00 0.00 0.00 3.49
18 19 5.046807 ACCGTTACTTCCATACTACTTTGCT 60.047 40.000 0.00 0.00 0.00 3.91
19 20 5.173664 ACCGTTACTTCCATACTACTTTGC 58.826 41.667 0.00 0.00 0.00 3.68
20 21 7.814107 TGTTACCGTTACTTCCATACTACTTTG 59.186 37.037 0.00 0.00 0.00 2.77
21 22 7.895759 TGTTACCGTTACTTCCATACTACTTT 58.104 34.615 0.00 0.00 0.00 2.66
22 23 7.177392 ACTGTTACCGTTACTTCCATACTACTT 59.823 37.037 0.00 0.00 0.00 2.24
23 24 6.660949 ACTGTTACCGTTACTTCCATACTACT 59.339 38.462 0.00 0.00 0.00 2.57
24 25 6.749118 CACTGTTACCGTTACTTCCATACTAC 59.251 42.308 0.00 0.00 0.00 2.73
25 26 6.127647 CCACTGTTACCGTTACTTCCATACTA 60.128 42.308 0.00 0.00 0.00 1.82
26 27 5.337009 CCACTGTTACCGTTACTTCCATACT 60.337 44.000 0.00 0.00 0.00 2.12
27 28 4.866486 CCACTGTTACCGTTACTTCCATAC 59.134 45.833 0.00 0.00 0.00 2.39
28 29 4.621274 GCCACTGTTACCGTTACTTCCATA 60.621 45.833 0.00 0.00 0.00 2.74
29 30 3.867216 GCCACTGTTACCGTTACTTCCAT 60.867 47.826 0.00 0.00 0.00 3.41
30 31 2.548493 GCCACTGTTACCGTTACTTCCA 60.548 50.000 0.00 0.00 0.00 3.53
31 32 2.071540 GCCACTGTTACCGTTACTTCC 58.928 52.381 0.00 0.00 0.00 3.46
32 33 2.758009 TGCCACTGTTACCGTTACTTC 58.242 47.619 0.00 0.00 0.00 3.01
33 34 2.914695 TGCCACTGTTACCGTTACTT 57.085 45.000 0.00 0.00 0.00 2.24
34 35 2.914695 TTGCCACTGTTACCGTTACT 57.085 45.000 0.00 0.00 0.00 2.24
35 36 3.313249 ACTTTTGCCACTGTTACCGTTAC 59.687 43.478 0.00 0.00 0.00 2.50
36 37 3.312973 CACTTTTGCCACTGTTACCGTTA 59.687 43.478 0.00 0.00 0.00 3.18
37 38 2.098443 CACTTTTGCCACTGTTACCGTT 59.902 45.455 0.00 0.00 0.00 4.44
38 39 1.673920 CACTTTTGCCACTGTTACCGT 59.326 47.619 0.00 0.00 0.00 4.83
39 40 1.944024 TCACTTTTGCCACTGTTACCG 59.056 47.619 0.00 0.00 0.00 4.02
40 41 2.685897 TGTCACTTTTGCCACTGTTACC 59.314 45.455 0.00 0.00 0.00 2.85
41 42 3.377172 ACTGTCACTTTTGCCACTGTTAC 59.623 43.478 0.00 0.00 0.00 2.50
42 43 3.616219 ACTGTCACTTTTGCCACTGTTA 58.384 40.909 0.00 0.00 0.00 2.41
43 44 2.446435 ACTGTCACTTTTGCCACTGTT 58.554 42.857 0.00 0.00 0.00 3.16
44 45 2.128771 ACTGTCACTTTTGCCACTGT 57.871 45.000 0.00 0.00 0.00 3.55
45 46 2.031682 GCTACTGTCACTTTTGCCACTG 60.032 50.000 0.00 0.00 0.00 3.66
46 47 2.222027 GCTACTGTCACTTTTGCCACT 58.778 47.619 0.00 0.00 0.00 4.00
47 48 1.946768 TGCTACTGTCACTTTTGCCAC 59.053 47.619 0.00 0.00 0.00 5.01
48 49 2.221169 CTGCTACTGTCACTTTTGCCA 58.779 47.619 0.00 0.00 0.00 4.92
49 50 2.222027 ACTGCTACTGTCACTTTTGCC 58.778 47.619 0.00 0.00 0.00 4.52
50 51 3.971032 AACTGCTACTGTCACTTTTGC 57.029 42.857 0.00 0.00 0.00 3.68
51 52 5.640732 ACAAAACTGCTACTGTCACTTTTG 58.359 37.500 10.17 10.17 35.40 2.44
52 53 5.897377 ACAAAACTGCTACTGTCACTTTT 57.103 34.783 0.00 0.00 0.00 2.27
53 54 6.037172 CACTACAAAACTGCTACTGTCACTTT 59.963 38.462 0.00 0.00 0.00 2.66
54 55 5.523916 CACTACAAAACTGCTACTGTCACTT 59.476 40.000 0.00 0.00 0.00 3.16
55 56 5.050490 CACTACAAAACTGCTACTGTCACT 58.950 41.667 0.00 0.00 0.00 3.41
56 57 5.047847 TCACTACAAAACTGCTACTGTCAC 58.952 41.667 0.00 0.00 0.00 3.67
57 58 5.270893 TCACTACAAAACTGCTACTGTCA 57.729 39.130 0.00 0.00 0.00 3.58
58 59 6.202954 ACAATCACTACAAAACTGCTACTGTC 59.797 38.462 0.00 0.00 0.00 3.51
59 60 6.055588 ACAATCACTACAAAACTGCTACTGT 58.944 36.000 0.00 0.00 0.00 3.55
60 61 6.545504 ACAATCACTACAAAACTGCTACTG 57.454 37.500 0.00 0.00 0.00 2.74
61 62 8.848474 ATTACAATCACTACAAAACTGCTACT 57.152 30.769 0.00 0.00 0.00 2.57
63 64 9.938280 ACTATTACAATCACTACAAAACTGCTA 57.062 29.630 0.00 0.00 0.00 3.49
64 65 8.721478 CACTATTACAATCACTACAAAACTGCT 58.279 33.333 0.00 0.00 0.00 4.24
65 66 8.504005 ACACTATTACAATCACTACAAAACTGC 58.496 33.333 0.00 0.00 0.00 4.40
66 67 9.811655 CACACTATTACAATCACTACAAAACTG 57.188 33.333 0.00 0.00 0.00 3.16
67 68 8.999431 CCACACTATTACAATCACTACAAAACT 58.001 33.333 0.00 0.00 0.00 2.66
68 69 7.749126 GCCACACTATTACAATCACTACAAAAC 59.251 37.037 0.00 0.00 0.00 2.43
69 70 7.445707 TGCCACACTATTACAATCACTACAAAA 59.554 33.333 0.00 0.00 0.00 2.44
70 71 6.937465 TGCCACACTATTACAATCACTACAAA 59.063 34.615 0.00 0.00 0.00 2.83
71 72 6.468543 TGCCACACTATTACAATCACTACAA 58.531 36.000 0.00 0.00 0.00 2.41
72 73 6.043854 TGCCACACTATTACAATCACTACA 57.956 37.500 0.00 0.00 0.00 2.74
73 74 5.006746 GCTGCCACACTATTACAATCACTAC 59.993 44.000 0.00 0.00 0.00 2.73
74 75 5.116180 GCTGCCACACTATTACAATCACTA 58.884 41.667 0.00 0.00 0.00 2.74
75 76 3.941483 GCTGCCACACTATTACAATCACT 59.059 43.478 0.00 0.00 0.00 3.41
76 77 3.065371 GGCTGCCACACTATTACAATCAC 59.935 47.826 15.17 0.00 0.00 3.06
77 78 3.054434 AGGCTGCCACACTATTACAATCA 60.054 43.478 22.65 0.00 0.00 2.57
78 79 3.545703 AGGCTGCCACACTATTACAATC 58.454 45.455 22.65 0.00 0.00 2.67
79 80 3.652057 AGGCTGCCACACTATTACAAT 57.348 42.857 22.65 0.00 0.00 2.71
80 81 3.081061 CAAGGCTGCCACACTATTACAA 58.919 45.455 22.65 0.00 0.00 2.41
81 82 2.617788 CCAAGGCTGCCACACTATTACA 60.618 50.000 22.65 0.00 0.00 2.41
82 83 2.017049 CCAAGGCTGCCACACTATTAC 58.983 52.381 22.65 0.00 0.00 1.89
83 84 1.681780 GCCAAGGCTGCCACACTATTA 60.682 52.381 22.65 0.00 38.26 0.98
84 85 0.967380 GCCAAGGCTGCCACACTATT 60.967 55.000 22.65 1.62 38.26 1.73
85 86 1.379044 GCCAAGGCTGCCACACTAT 60.379 57.895 22.65 0.00 38.26 2.12
86 87 2.034066 GCCAAGGCTGCCACACTA 59.966 61.111 22.65 0.00 38.26 2.74
87 88 3.518552 ATGCCAAGGCTGCCACACT 62.519 57.895 22.65 0.00 42.51 3.55
88 89 2.576832 AATGCCAAGGCTGCCACAC 61.577 57.895 22.65 7.74 42.51 3.82
89 90 2.203669 AATGCCAAGGCTGCCACA 60.204 55.556 22.65 13.41 42.51 4.17
90 91 1.610554 ATCAATGCCAAGGCTGCCAC 61.611 55.000 22.65 7.74 42.51 5.01
91 92 0.905809 AATCAATGCCAAGGCTGCCA 60.906 50.000 22.65 0.00 42.51 4.92
92 93 0.251073 AAATCAATGCCAAGGCTGCC 59.749 50.000 11.65 11.65 42.51 4.85
93 94 1.648504 GAAATCAATGCCAAGGCTGC 58.351 50.000 12.96 0.00 42.51 5.25
94 95 1.470285 CGGAAATCAATGCCAAGGCTG 60.470 52.381 12.96 3.28 42.51 4.85
95 96 0.819582 CGGAAATCAATGCCAAGGCT 59.180 50.000 12.96 0.00 42.51 4.58
96 97 0.807275 GCGGAAATCAATGCCAAGGC 60.807 55.000 3.61 3.61 42.35 4.35
97 98 0.526096 CGCGGAAATCAATGCCAAGG 60.526 55.000 0.00 0.00 0.00 3.61
98 99 0.526096 CCGCGGAAATCAATGCCAAG 60.526 55.000 24.07 0.00 0.00 3.61
99 100 1.510383 CCGCGGAAATCAATGCCAA 59.490 52.632 24.07 0.00 0.00 4.52
100 101 2.413963 CCCGCGGAAATCAATGCCA 61.414 57.895 30.73 0.00 0.00 4.92
101 102 1.662438 TTCCCGCGGAAATCAATGCC 61.662 55.000 30.73 0.00 38.93 4.40
102 103 0.172352 TTTCCCGCGGAAATCAATGC 59.828 50.000 30.73 0.00 45.42 3.56
114 115 3.508840 CATCGCCTGGTTTCCCGC 61.509 66.667 0.00 0.00 0.00 6.13
115 116 1.815421 CTCATCGCCTGGTTTCCCG 60.815 63.158 0.00 0.00 0.00 5.14
116 117 1.452108 CCTCATCGCCTGGTTTCCC 60.452 63.158 0.00 0.00 0.00 3.97
117 118 0.744771 GTCCTCATCGCCTGGTTTCC 60.745 60.000 0.00 0.00 0.00 3.13
118 119 1.084370 CGTCCTCATCGCCTGGTTTC 61.084 60.000 0.00 0.00 0.00 2.78
119 120 1.079127 CGTCCTCATCGCCTGGTTT 60.079 57.895 0.00 0.00 0.00 3.27
120 121 1.982395 TCGTCCTCATCGCCTGGTT 60.982 57.895 0.00 0.00 0.00 3.67
121 122 2.362503 TCGTCCTCATCGCCTGGT 60.363 61.111 0.00 0.00 0.00 4.00
122 123 2.105128 GTCGTCCTCATCGCCTGG 59.895 66.667 0.00 0.00 0.00 4.45
123 124 2.266376 TTCGTCGTCCTCATCGCCTG 62.266 60.000 0.00 0.00 0.00 4.85
124 125 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
125 126 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
126 127 1.586564 CCTTCGTCGTCCTCATCGC 60.587 63.158 0.00 0.00 0.00 4.58
127 128 1.586564 GCCTTCGTCGTCCTCATCG 60.587 63.158 0.00 0.00 0.00 3.84
128 129 1.586564 CGCCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
129 130 2.490217 CGCCTTCGTCGTCCTCAT 59.510 61.111 0.00 0.00 0.00 2.90
130 131 3.744719 CCGCCTTCGTCGTCCTCA 61.745 66.667 0.00 0.00 0.00 3.86
162 163 2.600470 AAAAGAAGTGGGGCCGCC 60.600 61.111 18.45 10.45 0.00 6.13
163 164 2.962569 GAAAAGAAGTGGGGCCGC 59.037 61.111 14.01 14.01 0.00 6.53
164 165 2.978018 GCGAAAAGAAGTGGGGCCG 61.978 63.158 0.00 0.00 0.00 6.13
165 166 2.962569 GCGAAAAGAAGTGGGGCC 59.037 61.111 0.00 0.00 0.00 5.80
166 167 2.561373 CGCGAAAAGAAGTGGGGC 59.439 61.111 0.00 0.00 0.00 5.80
167 168 2.561373 GCGCGAAAAGAAGTGGGG 59.439 61.111 12.10 0.00 0.00 4.96
168 169 1.791103 TTGGCGCGAAAAGAAGTGGG 61.791 55.000 12.10 0.00 0.00 4.61
169 170 0.030101 TTTGGCGCGAAAAGAAGTGG 59.970 50.000 15.55 0.00 0.00 4.00
170 171 1.833860 TTTTGGCGCGAAAAGAAGTG 58.166 45.000 23.88 0.00 0.00 3.16
171 172 2.570442 TTTTTGGCGCGAAAAGAAGT 57.430 40.000 25.65 0.00 0.00 3.01
187 188 2.368548 GGGTGCCTGAGGAAACATTTTT 59.631 45.455 0.65 0.00 0.00 1.94
188 189 1.970640 GGGTGCCTGAGGAAACATTTT 59.029 47.619 0.65 0.00 0.00 1.82
189 190 1.632589 GGGTGCCTGAGGAAACATTT 58.367 50.000 0.65 0.00 0.00 2.32
190 191 0.251787 GGGGTGCCTGAGGAAACATT 60.252 55.000 0.65 0.00 0.00 2.71
191 192 1.384191 GGGGTGCCTGAGGAAACAT 59.616 57.895 0.65 0.00 0.00 2.71
192 193 2.840753 GGGGGTGCCTGAGGAAACA 61.841 63.158 0.65 0.00 0.00 2.83
193 194 2.035783 GGGGGTGCCTGAGGAAAC 59.964 66.667 0.65 0.00 0.00 2.78
194 195 3.646715 CGGGGGTGCCTGAGGAAA 61.647 66.667 0.65 0.00 0.00 3.13
216 217 4.404098 AACCTAGCGCGTTGGGGG 62.404 66.667 27.69 17.70 0.00 5.40
217 218 2.818274 GAACCTAGCGCGTTGGGG 60.818 66.667 27.69 20.01 0.00 4.96
218 219 3.186047 CGAACCTAGCGCGTTGGG 61.186 66.667 23.33 23.33 0.00 4.12
219 220 3.186047 CCGAACCTAGCGCGTTGG 61.186 66.667 8.43 10.32 0.00 3.77
220 221 3.849953 GCCGAACCTAGCGCGTTG 61.850 66.667 8.43 0.00 0.00 4.10
245 246 4.514569 CCGAATTTGACGCCGGCG 62.515 66.667 44.88 44.88 46.03 6.46
246 247 4.174129 CCCGAATTTGACGCCGGC 62.174 66.667 19.07 19.07 40.56 6.13
247 248 4.174129 GCCCGAATTTGACGCCGG 62.174 66.667 0.00 0.00 41.47 6.13
248 249 1.363145 TAAGCCCGAATTTGACGCCG 61.363 55.000 0.00 0.00 0.00 6.46
249 250 0.806241 TTAAGCCCGAATTTGACGCC 59.194 50.000 0.00 0.00 0.00 5.68
250 251 1.466866 GGTTAAGCCCGAATTTGACGC 60.467 52.381 0.00 0.00 0.00 5.19
251 252 2.537639 GGTTAAGCCCGAATTTGACG 57.462 50.000 0.00 0.00 0.00 4.35
261 262 2.073056 CAATTTTTGCCGGTTAAGCCC 58.927 47.619 1.90 0.00 0.00 5.19
262 263 2.073056 CCAATTTTTGCCGGTTAAGCC 58.927 47.619 1.90 0.00 0.00 4.35
263 264 2.073056 CCCAATTTTTGCCGGTTAAGC 58.927 47.619 1.90 0.00 0.00 3.09
264 265 3.394674 ACCCAATTTTTGCCGGTTAAG 57.605 42.857 1.90 0.00 0.00 1.85
265 266 3.840124 AACCCAATTTTTGCCGGTTAA 57.160 38.095 1.90 0.00 34.69 2.01
266 267 3.388350 AGAAACCCAATTTTTGCCGGTTA 59.612 39.130 1.90 0.00 35.16 2.85
267 268 2.171659 AGAAACCCAATTTTTGCCGGTT 59.828 40.909 1.90 0.00 36.96 4.44
268 269 1.765904 AGAAACCCAATTTTTGCCGGT 59.234 42.857 1.90 0.00 0.00 5.28
269 270 2.542020 AGAAACCCAATTTTTGCCGG 57.458 45.000 0.00 0.00 0.00 6.13
270 271 3.584834 CCTAGAAACCCAATTTTTGCCG 58.415 45.455 0.00 0.00 0.00 5.69
271 272 3.580895 TCCCTAGAAACCCAATTTTTGCC 59.419 43.478 0.00 0.00 0.00 4.52
272 273 4.882842 TCCCTAGAAACCCAATTTTTGC 57.117 40.909 0.00 0.00 0.00 3.68
273 274 5.178061 GCATCCCTAGAAACCCAATTTTTG 58.822 41.667 0.00 0.00 0.00 2.44
274 275 4.081697 CGCATCCCTAGAAACCCAATTTTT 60.082 41.667 0.00 0.00 0.00 1.94
275 276 3.447229 CGCATCCCTAGAAACCCAATTTT 59.553 43.478 0.00 0.00 0.00 1.82
276 277 3.023832 CGCATCCCTAGAAACCCAATTT 58.976 45.455 0.00 0.00 0.00 1.82
277 278 2.241176 TCGCATCCCTAGAAACCCAATT 59.759 45.455 0.00 0.00 0.00 2.32
278 279 1.843851 TCGCATCCCTAGAAACCCAAT 59.156 47.619 0.00 0.00 0.00 3.16
279 280 1.281419 TCGCATCCCTAGAAACCCAA 58.719 50.000 0.00 0.00 0.00 4.12
280 281 1.507140 ATCGCATCCCTAGAAACCCA 58.493 50.000 0.00 0.00 0.00 4.51
281 282 2.640316 AATCGCATCCCTAGAAACCC 57.360 50.000 0.00 0.00 0.00 4.11
282 283 5.007724 CAGTTAAATCGCATCCCTAGAAACC 59.992 44.000 0.00 0.00 0.00 3.27
283 284 5.815740 TCAGTTAAATCGCATCCCTAGAAAC 59.184 40.000 0.00 0.00 0.00 2.78
284 285 5.984725 TCAGTTAAATCGCATCCCTAGAAA 58.015 37.500 0.00 0.00 0.00 2.52
285 286 5.607939 TCAGTTAAATCGCATCCCTAGAA 57.392 39.130 0.00 0.00 0.00 2.10
286 287 5.808366 ATCAGTTAAATCGCATCCCTAGA 57.192 39.130 0.00 0.00 0.00 2.43
287 288 6.867662 AAATCAGTTAAATCGCATCCCTAG 57.132 37.500 0.00 0.00 0.00 3.02
288 289 6.018262 CGAAAATCAGTTAAATCGCATCCCTA 60.018 38.462 0.00 0.00 0.00 3.53
289 290 5.220854 CGAAAATCAGTTAAATCGCATCCCT 60.221 40.000 0.00 0.00 0.00 4.20
290 291 4.970003 CGAAAATCAGTTAAATCGCATCCC 59.030 41.667 0.00 0.00 0.00 3.85
291 292 5.806286 TCGAAAATCAGTTAAATCGCATCC 58.194 37.500 0.00 0.00 0.00 3.51
292 293 6.412072 CCTTCGAAAATCAGTTAAATCGCATC 59.588 38.462 0.00 0.00 0.00 3.91
293 294 6.258160 CCTTCGAAAATCAGTTAAATCGCAT 58.742 36.000 0.00 0.00 0.00 4.73
294 295 5.627172 CCTTCGAAAATCAGTTAAATCGCA 58.373 37.500 0.00 0.00 0.00 5.10
295 296 4.495828 GCCTTCGAAAATCAGTTAAATCGC 59.504 41.667 0.00 0.00 0.00 4.58
296 297 4.723862 CGCCTTCGAAAATCAGTTAAATCG 59.276 41.667 0.00 0.00 38.10 3.34
297 298 5.028375 CCGCCTTCGAAAATCAGTTAAATC 58.972 41.667 0.00 0.00 38.10 2.17
298 299 4.457949 ACCGCCTTCGAAAATCAGTTAAAT 59.542 37.500 0.00 0.00 38.10 1.40
299 300 3.816523 ACCGCCTTCGAAAATCAGTTAAA 59.183 39.130 0.00 0.00 38.10 1.52
300 301 3.187637 CACCGCCTTCGAAAATCAGTTAA 59.812 43.478 0.00 0.00 38.10 2.01
301 302 2.739913 CACCGCCTTCGAAAATCAGTTA 59.260 45.455 0.00 0.00 38.10 2.24
302 303 1.535462 CACCGCCTTCGAAAATCAGTT 59.465 47.619 0.00 0.00 38.10 3.16
303 304 1.156736 CACCGCCTTCGAAAATCAGT 58.843 50.000 0.00 0.00 38.10 3.41
304 305 0.179189 GCACCGCCTTCGAAAATCAG 60.179 55.000 0.00 0.00 38.10 2.90
305 306 0.605319 AGCACCGCCTTCGAAAATCA 60.605 50.000 0.00 0.00 38.10 2.57
306 307 1.365699 TAGCACCGCCTTCGAAAATC 58.634 50.000 0.00 0.00 38.10 2.17
307 308 1.816074 TTAGCACCGCCTTCGAAAAT 58.184 45.000 0.00 0.00 38.10 1.82
308 309 1.595466 TTTAGCACCGCCTTCGAAAA 58.405 45.000 0.00 0.00 38.10 2.29
309 310 1.595466 TTTTAGCACCGCCTTCGAAA 58.405 45.000 0.00 0.00 38.10 3.46
310 311 1.533731 CTTTTTAGCACCGCCTTCGAA 59.466 47.619 0.00 0.00 38.10 3.71
311 312 1.153353 CTTTTTAGCACCGCCTTCGA 58.847 50.000 0.00 0.00 38.10 3.71
312 313 0.168128 CCTTTTTAGCACCGCCTTCG 59.832 55.000 0.00 0.00 0.00 3.79
313 314 0.526211 CCCTTTTTAGCACCGCCTTC 59.474 55.000 0.00 0.00 0.00 3.46
314 315 1.532604 GCCCTTTTTAGCACCGCCTT 61.533 55.000 0.00 0.00 0.00 4.35
315 316 1.977009 GCCCTTTTTAGCACCGCCT 60.977 57.895 0.00 0.00 0.00 5.52
316 317 2.571757 GCCCTTTTTAGCACCGCC 59.428 61.111 0.00 0.00 0.00 6.13
317 318 1.532604 AAGGCCCTTTTTAGCACCGC 61.533 55.000 0.00 0.00 0.00 5.68
318 319 0.243636 CAAGGCCCTTTTTAGCACCG 59.756 55.000 0.00 0.00 0.00 4.94
319 320 1.546029 CTCAAGGCCCTTTTTAGCACC 59.454 52.381 0.00 0.00 0.00 5.01
320 321 1.546029 CCTCAAGGCCCTTTTTAGCAC 59.454 52.381 0.00 0.00 0.00 4.40
321 322 1.549950 CCCTCAAGGCCCTTTTTAGCA 60.550 52.381 0.00 0.00 0.00 3.49
322 323 1.186200 CCCTCAAGGCCCTTTTTAGC 58.814 55.000 0.00 0.00 0.00 3.09
333 334 0.681243 GCCCTAACAAGCCCTCAAGG 60.681 60.000 0.00 0.00 39.47 3.61
334 335 0.038166 TGCCCTAACAAGCCCTCAAG 59.962 55.000 0.00 0.00 0.00 3.02
335 336 0.704076 ATGCCCTAACAAGCCCTCAA 59.296 50.000 0.00 0.00 0.00 3.02
336 337 0.034186 CATGCCCTAACAAGCCCTCA 60.034 55.000 0.00 0.00 0.00 3.86
337 338 0.753111 CCATGCCCTAACAAGCCCTC 60.753 60.000 0.00 0.00 0.00 4.30
338 339 1.307647 CCATGCCCTAACAAGCCCT 59.692 57.895 0.00 0.00 0.00 5.19
339 340 0.614697 AACCATGCCCTAACAAGCCC 60.615 55.000 0.00 0.00 0.00 5.19
340 341 0.532115 CAACCATGCCCTAACAAGCC 59.468 55.000 0.00 0.00 0.00 4.35
341 342 0.532115 CCAACCATGCCCTAACAAGC 59.468 55.000 0.00 0.00 0.00 4.01
342 343 2.094675 CTCCAACCATGCCCTAACAAG 58.905 52.381 0.00 0.00 0.00 3.16
343 344 1.707989 TCTCCAACCATGCCCTAACAA 59.292 47.619 0.00 0.00 0.00 2.83
344 345 1.367346 TCTCCAACCATGCCCTAACA 58.633 50.000 0.00 0.00 0.00 2.41
345 346 2.301346 CATCTCCAACCATGCCCTAAC 58.699 52.381 0.00 0.00 0.00 2.34
346 347 1.410083 GCATCTCCAACCATGCCCTAA 60.410 52.381 0.00 0.00 39.70 2.69
347 348 0.183492 GCATCTCCAACCATGCCCTA 59.817 55.000 0.00 0.00 39.70 3.53
348 349 1.076485 GCATCTCCAACCATGCCCT 60.076 57.895 0.00 0.00 39.70 5.19
349 350 1.076485 AGCATCTCCAACCATGCCC 60.076 57.895 0.30 0.00 45.63 5.36
350 351 2.412605 GAGCATCTCCAACCATGCC 58.587 57.895 0.30 0.00 45.63 4.40
362 363 1.346068 CTGCCCCTACCTAAGAGCATC 59.654 57.143 0.00 0.00 34.85 3.91
363 364 1.428869 CTGCCCCTACCTAAGAGCAT 58.571 55.000 0.00 0.00 34.85 3.79
364 365 0.691078 CCTGCCCCTACCTAAGAGCA 60.691 60.000 0.00 0.00 34.38 4.26
365 366 0.398664 TCCTGCCCCTACCTAAGAGC 60.399 60.000 0.00 0.00 0.00 4.09
366 367 1.062810 AGTCCTGCCCCTACCTAAGAG 60.063 57.143 0.00 0.00 0.00 2.85
367 368 1.016415 AGTCCTGCCCCTACCTAAGA 58.984 55.000 0.00 0.00 0.00 2.10
368 369 1.415200 GAGTCCTGCCCCTACCTAAG 58.585 60.000 0.00 0.00 0.00 2.18
369 370 0.396695 CGAGTCCTGCCCCTACCTAA 60.397 60.000 0.00 0.00 0.00 2.69
370 371 1.229359 CGAGTCCTGCCCCTACCTA 59.771 63.158 0.00 0.00 0.00 3.08
371 372 2.042843 CGAGTCCTGCCCCTACCT 60.043 66.667 0.00 0.00 0.00 3.08
372 373 2.363925 ACGAGTCCTGCCCCTACC 60.364 66.667 0.00 0.00 0.00 3.18
373 374 1.542187 AACACGAGTCCTGCCCCTAC 61.542 60.000 0.00 0.00 0.00 3.18
374 375 0.834687 AAACACGAGTCCTGCCCCTA 60.835 55.000 0.00 0.00 0.00 3.53
375 376 1.705997 AAAACACGAGTCCTGCCCCT 61.706 55.000 0.00 0.00 0.00 4.79
376 377 1.228154 AAAACACGAGTCCTGCCCC 60.228 57.895 0.00 0.00 0.00 5.80
377 378 1.566018 CGAAAACACGAGTCCTGCCC 61.566 60.000 0.00 0.00 35.09 5.36
378 379 1.566018 CCGAAAACACGAGTCCTGCC 61.566 60.000 0.00 0.00 35.09 4.85
379 380 1.566018 CCCGAAAACACGAGTCCTGC 61.566 60.000 0.00 0.00 35.09 4.85
380 381 1.566018 GCCCGAAAACACGAGTCCTG 61.566 60.000 0.00 0.00 35.09 3.86
381 382 1.301479 GCCCGAAAACACGAGTCCT 60.301 57.895 0.00 0.00 35.09 3.85
382 383 2.664436 CGCCCGAAAACACGAGTCC 61.664 63.158 0.00 0.00 35.09 3.85
383 384 1.493134 AACGCCCGAAAACACGAGTC 61.493 55.000 0.00 0.00 35.09 3.36
384 385 1.522130 AACGCCCGAAAACACGAGT 60.522 52.632 0.00 0.00 35.09 4.18
385 386 1.083015 CAACGCCCGAAAACACGAG 60.083 57.895 0.00 0.00 35.09 4.18
386 387 1.088340 TTCAACGCCCGAAAACACGA 61.088 50.000 0.00 0.00 35.09 4.35
387 388 0.656205 CTTCAACGCCCGAAAACACG 60.656 55.000 0.00 0.00 0.00 4.49
388 389 0.933047 GCTTCAACGCCCGAAAACAC 60.933 55.000 0.00 0.00 0.00 3.32
389 390 1.357334 GCTTCAACGCCCGAAAACA 59.643 52.632 0.00 0.00 0.00 2.83
390 391 1.371267 GGCTTCAACGCCCGAAAAC 60.371 57.895 0.00 0.00 44.41 2.43
391 392 3.035727 GGCTTCAACGCCCGAAAA 58.964 55.556 0.00 0.00 44.41 2.29
398 399 1.569479 GAGTGACCAGGCTTCAACGC 61.569 60.000 0.00 0.00 0.00 4.84
399 400 0.951040 GGAGTGACCAGGCTTCAACG 60.951 60.000 0.00 0.00 38.79 4.10
400 401 0.398318 AGGAGTGACCAGGCTTCAAC 59.602 55.000 0.00 0.00 42.04 3.18
401 402 0.687354 GAGGAGTGACCAGGCTTCAA 59.313 55.000 0.00 0.00 42.04 2.69
402 403 0.471780 TGAGGAGTGACCAGGCTTCA 60.472 55.000 0.00 0.00 42.04 3.02
403 404 0.248843 CTGAGGAGTGACCAGGCTTC 59.751 60.000 0.00 0.00 42.04 3.86
404 405 0.472734 ACTGAGGAGTGACCAGGCTT 60.473 55.000 0.00 0.00 42.04 4.35
405 406 0.409876 TACTGAGGAGTGACCAGGCT 59.590 55.000 0.00 0.00 42.04 4.58
406 407 1.410882 GATACTGAGGAGTGACCAGGC 59.589 57.143 0.00 0.00 42.04 4.85
407 408 1.678627 CGATACTGAGGAGTGACCAGG 59.321 57.143 0.00 0.00 42.04 4.45
408 409 1.678627 CCGATACTGAGGAGTGACCAG 59.321 57.143 0.00 0.00 42.04 4.00
409 410 1.763968 CCGATACTGAGGAGTGACCA 58.236 55.000 0.00 0.00 42.04 4.02
410 411 0.386113 GCCGATACTGAGGAGTGACC 59.614 60.000 0.00 0.00 39.35 4.02
411 412 1.066303 CAGCCGATACTGAGGAGTGAC 59.934 57.143 0.00 0.00 40.25 3.67
412 413 1.064685 TCAGCCGATACTGAGGAGTGA 60.065 52.381 0.00 0.00 41.72 3.41
413 414 1.393603 TCAGCCGATACTGAGGAGTG 58.606 55.000 0.00 0.00 41.72 3.51
414 415 3.905331 TCAGCCGATACTGAGGAGT 57.095 52.632 0.00 0.00 41.72 3.85
420 421 2.905075 TGGTTTCATCAGCCGATACTG 58.095 47.619 0.00 0.00 39.12 2.74
421 422 3.627395 TTGGTTTCATCAGCCGATACT 57.373 42.857 0.00 0.00 0.00 2.12
422 423 4.335315 TGATTTGGTTTCATCAGCCGATAC 59.665 41.667 0.00 0.00 0.00 2.24
423 424 4.522114 TGATTTGGTTTCATCAGCCGATA 58.478 39.130 0.00 0.00 0.00 2.92
424 425 3.355378 TGATTTGGTTTCATCAGCCGAT 58.645 40.909 0.00 0.00 0.00 4.18
425 426 2.789213 TGATTTGGTTTCATCAGCCGA 58.211 42.857 0.00 0.00 0.00 5.54
426 427 3.574284 TTGATTTGGTTTCATCAGCCG 57.426 42.857 0.00 0.00 31.04 5.52
427 428 5.299949 ACTTTTGATTTGGTTTCATCAGCC 58.700 37.500 0.00 0.00 31.04 4.85
428 429 7.945033 TTACTTTTGATTTGGTTTCATCAGC 57.055 32.000 0.00 0.00 31.04 4.26
429 430 9.748708 TCTTTACTTTTGATTTGGTTTCATCAG 57.251 29.630 0.00 0.00 31.04 2.90
441 442 8.914011 GCCCACCTATATTCTTTACTTTTGATT 58.086 33.333 0.00 0.00 0.00 2.57
442 443 7.228706 CGCCCACCTATATTCTTTACTTTTGAT 59.771 37.037 0.00 0.00 0.00 2.57
443 444 6.540914 CGCCCACCTATATTCTTTACTTTTGA 59.459 38.462 0.00 0.00 0.00 2.69
444 445 6.317893 ACGCCCACCTATATTCTTTACTTTTG 59.682 38.462 0.00 0.00 0.00 2.44
445 446 6.317893 CACGCCCACCTATATTCTTTACTTTT 59.682 38.462 0.00 0.00 0.00 2.27
446 447 5.820947 CACGCCCACCTATATTCTTTACTTT 59.179 40.000 0.00 0.00 0.00 2.66
447 448 5.365619 CACGCCCACCTATATTCTTTACTT 58.634 41.667 0.00 0.00 0.00 2.24
448 449 4.742743 GCACGCCCACCTATATTCTTTACT 60.743 45.833 0.00 0.00 0.00 2.24
449 450 3.497262 GCACGCCCACCTATATTCTTTAC 59.503 47.826 0.00 0.00 0.00 2.01
450 451 3.389983 AGCACGCCCACCTATATTCTTTA 59.610 43.478 0.00 0.00 0.00 1.85
451 452 2.172717 AGCACGCCCACCTATATTCTTT 59.827 45.455 0.00 0.00 0.00 2.52
452 453 1.768870 AGCACGCCCACCTATATTCTT 59.231 47.619 0.00 0.00 0.00 2.52
453 454 1.344763 GAGCACGCCCACCTATATTCT 59.655 52.381 0.00 0.00 0.00 2.40
454 455 1.070134 TGAGCACGCCCACCTATATTC 59.930 52.381 0.00 0.00 0.00 1.75
455 456 1.128200 TGAGCACGCCCACCTATATT 58.872 50.000 0.00 0.00 0.00 1.28
456 457 1.070758 CTTGAGCACGCCCACCTATAT 59.929 52.381 0.00 0.00 0.00 0.86
457 458 0.464036 CTTGAGCACGCCCACCTATA 59.536 55.000 0.00 0.00 0.00 1.31
458 459 1.221840 CTTGAGCACGCCCACCTAT 59.778 57.895 0.00 0.00 0.00 2.57
459 460 1.911269 TCTTGAGCACGCCCACCTA 60.911 57.895 0.00 0.00 0.00 3.08
460 461 3.241530 TCTTGAGCACGCCCACCT 61.242 61.111 0.00 0.00 0.00 4.00
461 462 3.050275 GTCTTGAGCACGCCCACC 61.050 66.667 0.00 0.00 0.00 4.61
462 463 1.672356 ATGTCTTGAGCACGCCCAC 60.672 57.895 0.00 0.00 0.00 4.61
463 464 1.672030 CATGTCTTGAGCACGCCCA 60.672 57.895 0.00 0.00 0.00 5.36
464 465 2.401766 CCATGTCTTGAGCACGCCC 61.402 63.158 0.00 0.00 0.00 6.13
465 466 3.044059 GCCATGTCTTGAGCACGCC 62.044 63.158 0.00 0.00 0.00 5.68
466 467 2.327343 TGCCATGTCTTGAGCACGC 61.327 57.895 0.00 0.00 29.90 5.34
467 468 1.499056 GTGCCATGTCTTGAGCACG 59.501 57.895 6.73 0.00 40.34 5.34
468 469 0.607489 AGGTGCCATGTCTTGAGCAC 60.607 55.000 12.43 12.43 44.78 4.40
469 470 0.111061 AAGGTGCCATGTCTTGAGCA 59.889 50.000 0.00 0.00 31.66 4.26
470 471 0.807496 GAAGGTGCCATGTCTTGAGC 59.193 55.000 0.00 0.00 0.00 4.26
471 472 1.004044 AGGAAGGTGCCATGTCTTGAG 59.996 52.381 0.00 0.00 0.00 3.02
472 473 1.003580 GAGGAAGGTGCCATGTCTTGA 59.996 52.381 0.00 0.00 0.00 3.02
473 474 1.457346 GAGGAAGGTGCCATGTCTTG 58.543 55.000 0.00 0.00 0.00 3.02
474 475 0.036010 CGAGGAAGGTGCCATGTCTT 60.036 55.000 0.00 0.00 0.00 3.01
475 476 1.599047 CGAGGAAGGTGCCATGTCT 59.401 57.895 0.00 0.00 0.00 3.41
476 477 1.450312 CCGAGGAAGGTGCCATGTC 60.450 63.158 0.00 0.00 0.00 3.06
477 478 0.907704 TACCGAGGAAGGTGCCATGT 60.908 55.000 0.00 0.00 45.54 3.21
478 479 0.469917 ATACCGAGGAAGGTGCCATG 59.530 55.000 0.00 0.00 45.54 3.66
479 480 0.759346 GATACCGAGGAAGGTGCCAT 59.241 55.000 0.00 0.00 45.54 4.40
480 481 0.325296 AGATACCGAGGAAGGTGCCA 60.325 55.000 0.00 0.00 45.54 4.92
481 482 0.831307 AAGATACCGAGGAAGGTGCC 59.169 55.000 0.00 0.00 45.54 5.01
482 483 1.202545 GGAAGATACCGAGGAAGGTGC 60.203 57.143 0.00 0.00 45.54 5.01
483 484 1.413077 GGGAAGATACCGAGGAAGGTG 59.587 57.143 0.00 0.00 45.54 4.00
493 494 2.168728 AGAAAGCTGTCGGGAAGATACC 59.831 50.000 0.00 0.00 0.00 2.73
494 495 3.449632 GAGAAAGCTGTCGGGAAGATAC 58.550 50.000 0.00 0.00 0.00 2.24
495 496 2.431057 GGAGAAAGCTGTCGGGAAGATA 59.569 50.000 0.00 0.00 0.00 1.98
496 497 1.208293 GGAGAAAGCTGTCGGGAAGAT 59.792 52.381 0.00 0.00 0.00 2.40
497 498 0.608640 GGAGAAAGCTGTCGGGAAGA 59.391 55.000 0.00 0.00 0.00 2.87
498 499 0.391793 GGGAGAAAGCTGTCGGGAAG 60.392 60.000 0.00 0.00 0.00 3.46
499 500 1.677552 GGGAGAAAGCTGTCGGGAA 59.322 57.895 0.00 0.00 0.00 3.97
500 501 2.646175 CGGGAGAAAGCTGTCGGGA 61.646 63.158 0.00 0.00 0.00 5.14
501 502 2.125512 CGGGAGAAAGCTGTCGGG 60.126 66.667 0.00 0.00 0.00 5.14
502 503 2.125512 CCGGGAGAAAGCTGTCGG 60.126 66.667 0.00 0.00 32.53 4.79
503 504 2.815647 GCCGGGAGAAAGCTGTCG 60.816 66.667 2.18 0.00 0.00 4.35
504 505 2.436824 GGCCGGGAGAAAGCTGTC 60.437 66.667 2.18 0.00 0.00 3.51
505 506 4.035102 GGGCCGGGAGAAAGCTGT 62.035 66.667 2.18 0.00 0.00 4.40
525 526 4.936823 GTGGTCGTCACGCGGTGT 62.937 66.667 12.47 0.00 41.72 4.16
532 533 1.935933 ACTCTTTGTGTGGTCGTCAC 58.064 50.000 5.06 5.06 46.23 3.67
533 534 2.953648 TCTACTCTTTGTGTGGTCGTCA 59.046 45.455 0.00 0.00 0.00 4.35
534 535 3.306818 GTCTACTCTTTGTGTGGTCGTC 58.693 50.000 0.00 0.00 0.00 4.20
535 536 2.035576 GGTCTACTCTTTGTGTGGTCGT 59.964 50.000 0.00 0.00 0.00 4.34
536 537 2.035449 TGGTCTACTCTTTGTGTGGTCG 59.965 50.000 0.00 0.00 0.00 4.79
537 538 3.069729 AGTGGTCTACTCTTTGTGTGGTC 59.930 47.826 0.00 0.00 33.17 4.02
538 539 3.039011 AGTGGTCTACTCTTTGTGTGGT 58.961 45.455 0.00 0.00 33.17 4.16
539 540 3.753294 AGTGGTCTACTCTTTGTGTGG 57.247 47.619 0.00 0.00 33.17 4.17
549 550 6.612049 CCTAATTCTTAAGGGAGTGGTCTACT 59.388 42.308 1.85 0.00 44.02 2.57
550 551 6.183360 CCCTAATTCTTAAGGGAGTGGTCTAC 60.183 46.154 5.19 0.00 44.12 2.59
551 552 5.903589 CCCTAATTCTTAAGGGAGTGGTCTA 59.096 44.000 5.19 0.00 44.12 2.59
552 553 4.722279 CCCTAATTCTTAAGGGAGTGGTCT 59.278 45.833 5.19 0.00 44.12 3.85
553 554 4.473922 ACCCTAATTCTTAAGGGAGTGGTC 59.526 45.833 16.57 0.00 44.12 4.02
554 555 4.445564 ACCCTAATTCTTAAGGGAGTGGT 58.554 43.478 16.57 0.60 44.12 4.16
555 556 5.452341 AACCCTAATTCTTAAGGGAGTGG 57.548 43.478 16.57 0.73 44.12 4.00
556 557 7.196637 AGTAACCCTAATTCTTAAGGGAGTG 57.803 40.000 16.57 0.00 44.12 3.51
557 558 7.825983 AAGTAACCCTAATTCTTAAGGGAGT 57.174 36.000 16.57 7.40 44.12 3.85
558 559 9.999660 GATAAGTAACCCTAATTCTTAAGGGAG 57.000 37.037 16.57 0.00 44.12 4.30
566 567 7.560262 GGCAAAAGGATAAGTAACCCTAATTCT 59.440 37.037 0.00 0.00 0.00 2.40
567 568 7.201884 GGGCAAAAGGATAAGTAACCCTAATTC 60.202 40.741 0.00 0.00 31.84 2.17
579 580 3.019564 CCACTGAGGGCAAAAGGATAAG 58.980 50.000 0.00 0.00 0.00 1.73
1089 1091 0.036306 AAACCCTTCGATCAACGCCT 59.964 50.000 0.00 0.00 42.26 5.52
1931 1934 5.941058 TCTAACATTAATTGTTTGGCTCCGA 59.059 36.000 8.06 0.00 46.51 4.55
2020 2023 3.575256 AGCTGAGGCACATTTTTCATGAA 59.425 39.130 3.38 3.38 41.70 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.