Multiple sequence alignment - TraesCS4B01G167200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G167200 chr4B 100.000 9237 0 0 1 9237 364038807 364048043 0.000000e+00 17058.0
1 TraesCS4B01G167200 chr4B 96.386 83 3 0 6790 6872 379428861 379428779 4.500000e-28 137.0
2 TraesCS4B01G167200 chr4B 83.838 99 13 3 3914 4010 83706076 83706173 3.550000e-14 91.6
3 TraesCS4B01G167200 chr4D 96.375 7117 177 26 784 7850 295577677 295570592 0.000000e+00 11638.0
4 TraesCS4B01G167200 chr4D 93.985 798 29 13 7765 8556 295570634 295569850 0.000000e+00 1190.0
5 TraesCS4B01G167200 chr4D 93.631 785 40 9 1 782 483466008 483466785 0.000000e+00 1164.0
6 TraesCS4B01G167200 chr4D 90.972 144 6 6 9095 9237 295568930 295568793 4.400000e-43 187.0
7 TraesCS4B01G167200 chr4D 73.242 512 122 13 4447 4947 65944127 65943620 1.230000e-38 172.0
8 TraesCS4B01G167200 chr4D 91.200 125 7 1 8890 9010 295569525 295569401 5.740000e-37 167.0
9 TraesCS4B01G167200 chr4D 86.395 147 7 6 8545 8689 295569682 295569547 2.080000e-31 148.0
10 TraesCS4B01G167200 chr4D 97.727 44 1 0 7807 7850 295570676 295570633 9.950000e-10 76.8
11 TraesCS4B01G167200 chr4D 100.000 29 0 0 8848 8876 295569552 295569524 5.000000e-03 54.7
12 TraesCS4B01G167200 chr4A 96.510 6247 182 19 819 7034 195965329 195971570 0.000000e+00 10296.0
13 TraesCS4B01G167200 chr4A 97.150 772 19 2 7038 7806 195971661 195972432 0.000000e+00 1301.0
14 TraesCS4B01G167200 chr4A 94.320 845 34 10 7802 8641 195972591 195973426 0.000000e+00 1282.0
15 TraesCS4B01G167200 chr4A 94.565 92 5 0 3318 3409 236122216 236122125 9.670000e-30 143.0
16 TraesCS4B01G167200 chr4A 96.386 83 3 0 6790 6872 174990707 174990789 4.500000e-28 137.0
17 TraesCS4B01G167200 chr4A 86.364 88 12 0 3985 4072 448512987 448513074 7.630000e-16 97.1
18 TraesCS4B01G167200 chr4A 94.545 55 3 0 9100 9154 195974655 195974709 1.650000e-12 86.1
19 TraesCS4B01G167200 chr4A 100.000 38 0 0 784 821 195964668 195964705 4.630000e-08 71.3
20 TraesCS4B01G167200 chr1B 97.957 783 14 2 1 782 613347996 613347215 0.000000e+00 1356.0
21 TraesCS4B01G167200 chr1B 72.852 512 125 12 4447 4947 82180872 82181380 7.420000e-36 163.0
22 TraesCS4B01G167200 chr1B 83.721 129 15 5 3909 4033 418670258 418670132 5.860000e-22 117.0
23 TraesCS4B01G167200 chr7B 96.811 784 21 4 1 782 623936136 623935355 0.000000e+00 1306.0
24 TraesCS4B01G167200 chr7B 97.219 755 17 4 1 753 4800455 4801207 0.000000e+00 1275.0
25 TraesCS4B01G167200 chr7B 97.024 168 5 0 8685 8852 444299185 444299352 5.460000e-72 283.0
26 TraesCS4B01G167200 chr7B 96.914 162 5 0 8685 8846 334452677 334452838 1.180000e-68 272.0
27 TraesCS4B01G167200 chr7B 89.937 159 16 0 8688 8846 60451060 60450902 1.220000e-48 206.0
28 TraesCS4B01G167200 chr7B 75.448 391 74 20 4447 4822 446143275 446143658 4.440000e-38 171.0
29 TraesCS4B01G167200 chr7B 91.262 103 3 3 3317 3413 588875014 588874912 1.620000e-27 135.0
30 TraesCS4B01G167200 chr7B 91.919 99 2 3 3316 3408 562993164 562993066 5.820000e-27 134.0
31 TraesCS4B01G167200 chr7B 95.833 48 2 0 3914 3961 443456626 443456673 2.770000e-10 78.7
32 TraesCS4B01G167200 chr7B 81.250 96 16 2 3914 4007 587916992 587917087 9.950000e-10 76.8
33 TraesCS4B01G167200 chr2B 96.807 783 24 1 1 782 553656454 553657236 0.000000e+00 1306.0
34 TraesCS4B01G167200 chr2B 98.193 166 3 0 8686 8851 677207658 677207493 3.260000e-74 291.0
35 TraesCS4B01G167200 chr2B 92.391 92 7 0 6787 6878 425443592 425443501 2.090000e-26 132.0
36 TraesCS4B01G167200 chr2B 83.838 99 13 3 3914 4010 182428954 182428857 3.550000e-14 91.6
37 TraesCS4B01G167200 chr2B 83.333 90 13 2 9056 9144 761272536 761272448 2.140000e-11 82.4
38 TraesCS4B01G167200 chr2B 96.000 50 1 1 5271 5320 728343359 728343407 7.690000e-11 80.5
39 TraesCS4B01G167200 chr5A 93.376 785 46 6 1 783 585637363 585638143 0.000000e+00 1157.0
40 TraesCS4B01G167200 chr5A 91.919 99 3 3 3316 3409 239529839 239529937 5.820000e-27 134.0
41 TraesCS4B01G167200 chr5A 93.333 90 6 0 6790 6879 318830815 318830726 5.820000e-27 134.0
42 TraesCS4B01G167200 chr7A 90.701 785 44 8 1 783 223446078 223446835 0.000000e+00 1018.0
43 TraesCS4B01G167200 chr7A 91.195 159 14 0 8688 8846 170884674 170884832 5.620000e-52 217.0
44 TraesCS4B01G167200 chr7A 90.909 55 5 0 5270 5324 670941817 670941871 3.580000e-09 75.0
45 TraesCS4B01G167200 chr3D 91.245 731 36 7 1 729 569568240 569568944 0.000000e+00 970.0
46 TraesCS4B01G167200 chr3D 83.154 279 45 2 4448 4724 250921880 250921602 4.280000e-63 254.0
47 TraesCS4B01G167200 chr3D 93.293 164 11 0 8685 8848 25189959 25189796 9.270000e-60 243.0
48 TraesCS4B01G167200 chr3D 90.854 164 9 1 8685 8848 57393547 57393704 2.020000e-51 215.0
49 TraesCS4B01G167200 chr3D 92.553 94 5 2 6783 6875 6411363 6411271 5.820000e-27 134.0
50 TraesCS4B01G167200 chr6D 86.980 745 76 14 1 735 464008844 464008111 0.000000e+00 819.0
51 TraesCS4B01G167200 chr6D 96.386 83 3 0 6790 6872 411948102 411948020 4.500000e-28 137.0
52 TraesCS4B01G167200 chr6D 83.607 122 9 5 3908 4029 393655149 393655259 4.560000e-18 104.0
53 TraesCS4B01G167200 chr6D 80.000 115 12 7 9052 9155 4810767 4810653 3.580000e-09 75.0
54 TraesCS4B01G167200 chr5B 97.143 175 4 1 8686 8860 47109223 47109050 2.520000e-75 294.0
55 TraesCS4B01G167200 chr5B 91.089 101 5 2 3310 3409 472738488 472738391 5.820000e-27 134.0
56 TraesCS4B01G167200 chr5B 91.781 73 6 0 710 782 688969272 688969200 1.640000e-17 102.0
57 TraesCS4B01G167200 chr5B 82.828 99 14 3 3914 4010 2078166 2078069 1.650000e-12 86.1
58 TraesCS4B01G167200 chr5B 97.872 47 1 0 5271 5317 383512985 383513031 2.140000e-11 82.4
59 TraesCS4B01G167200 chr2A 98.171 164 3 0 8685 8848 717561505 717561342 4.220000e-73 287.0
60 TraesCS4B01G167200 chr2A 98.160 163 3 0 8686 8848 738732218 738732380 1.520000e-72 285.0
61 TraesCS4B01G167200 chr2A 95.758 165 7 0 8686 8850 29600111 29600275 5.500000e-67 267.0
62 TraesCS4B01G167200 chr6B 97.590 166 4 0 8686 8851 631194216 631194051 1.520000e-72 285.0
63 TraesCS4B01G167200 chr6B 93.407 91 6 0 6782 6872 276499207 276499297 1.620000e-27 135.0
64 TraesCS4B01G167200 chr6B 89.623 106 5 4 3316 3415 343021728 343021623 7.530000e-26 130.0
65 TraesCS4B01G167200 chr3B 97.561 164 4 0 8685 8848 198997 199160 1.960000e-71 281.0
66 TraesCS4B01G167200 chr3B 92.814 167 12 0 8686 8852 126488359 126488525 9.270000e-60 243.0
67 TraesCS4B01G167200 chr3B 82.270 282 45 3 4448 4724 312159836 312159555 1.200000e-58 239.0
68 TraesCS4B01G167200 chr3B 90.566 159 15 0 8694 8852 657103090 657102932 2.610000e-50 211.0
69 TraesCS4B01G167200 chr3A 82.500 280 45 4 4448 4724 333322643 333322921 9.270000e-60 243.0
70 TraesCS4B01G167200 chr6A 73.936 376 81 17 4447 4810 101300077 101299707 1.620000e-27 135.0
71 TraesCS4B01G167200 chr7D 73.789 351 82 10 4605 4947 65574962 65575310 7.530000e-26 130.0
72 TraesCS4B01G167200 chr7D 87.719 114 7 5 3316 3422 58788036 58787923 9.740000e-25 126.0
73 TraesCS4B01G167200 chrUn 91.781 73 6 0 710 782 342231605 342231677 1.640000e-17 102.0
74 TraesCS4B01G167200 chr5D 97.872 47 1 0 5271 5317 330393568 330393614 2.140000e-11 82.4
75 TraesCS4B01G167200 chr5D 92.453 53 4 0 5270 5322 556999585 556999533 9.950000e-10 76.8
76 TraesCS4B01G167200 chr2D 96.000 50 1 1 5271 5320 598951281 598951329 7.690000e-11 80.5
77 TraesCS4B01G167200 chr1A 87.143 70 5 3 5270 5336 566218124 566218056 9.950000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G167200 chr4B 364038807 364048043 9236 False 17058.000000 17058 100.0000 1 9237 1 chr4B.!!$F2 9236
1 TraesCS4B01G167200 chr4D 295568793 295577677 8884 True 2230.783333 11638 93.1545 784 9237 6 chr4D.!!$R3 8453
2 TraesCS4B01G167200 chr4D 483466008 483466785 777 False 1164.000000 1164 93.6310 1 782 1 chr4D.!!$F1 781
3 TraesCS4B01G167200 chr4A 195964668 195974709 10041 False 2607.280000 10296 96.5050 784 9154 5 chr4A.!!$F3 8370
4 TraesCS4B01G167200 chr1B 613347215 613347996 781 True 1356.000000 1356 97.9570 1 782 1 chr1B.!!$R2 781
5 TraesCS4B01G167200 chr7B 623935355 623936136 781 True 1306.000000 1306 96.8110 1 782 1 chr7B.!!$R4 781
6 TraesCS4B01G167200 chr7B 4800455 4801207 752 False 1275.000000 1275 97.2190 1 753 1 chr7B.!!$F1 752
7 TraesCS4B01G167200 chr2B 553656454 553657236 782 False 1306.000000 1306 96.8070 1 782 1 chr2B.!!$F1 781
8 TraesCS4B01G167200 chr5A 585637363 585638143 780 False 1157.000000 1157 93.3760 1 783 1 chr5A.!!$F2 782
9 TraesCS4B01G167200 chr7A 223446078 223446835 757 False 1018.000000 1018 90.7010 1 783 1 chr7A.!!$F2 782
10 TraesCS4B01G167200 chr3D 569568240 569568944 704 False 970.000000 970 91.2450 1 729 1 chr3D.!!$F2 728
11 TraesCS4B01G167200 chr6D 464008111 464008844 733 True 819.000000 819 86.9800 1 735 1 chr6D.!!$R3 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 1578 0.858598 TACTCCTCCCTCCCTTCCCA 60.859 60.000 0.00 0.00 0.00 4.37 F
1206 1873 0.588252 CATTGATCCGTGGGATTCGC 59.412 55.000 0.00 0.00 43.27 4.70 F
2788 3469 1.133853 TGCCCAATGCCAAAAGCTTTT 60.134 42.857 18.74 18.74 44.23 2.27 F
2970 3651 3.094572 GTTGTAGTGGCCTACTGTCCTA 58.905 50.000 15.55 0.00 43.38 2.94 F
3969 4653 1.231296 GCCTAGCGCTTATCTTGCCC 61.231 60.000 18.68 0.00 0.00 5.36 F
3973 4657 0.035056 AGCGCTTATCTTGCCCAAGT 60.035 50.000 2.64 0.00 39.38 3.16 F
4558 5243 0.615850 TTGTATGGCCACACATCGGA 59.384 50.000 19.48 0.00 32.39 4.55 F
5124 5809 0.679002 TCAGCTGCTCTCAAATGCCC 60.679 55.000 9.47 0.00 0.00 5.36 F
5348 6035 3.508402 TGACTTGTGTACAGGCTATTCGA 59.492 43.478 0.00 0.00 0.00 3.71 F
7103 7909 1.062002 GGCAATCATGTCGGTGTTACG 59.938 52.381 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2319 2988 0.185901 ACACCAAACTGAGCCCACAT 59.814 50.000 0.00 0.00 0.00 3.21 R
3139 3820 0.039035 GGGTGGGGCATCAAGTTACA 59.961 55.000 0.00 0.00 0.00 2.41 R
3969 4653 0.037697 TGTGCCTAGGCGTACACTTG 60.038 55.000 28.28 0.00 45.51 3.16 R
3973 4657 0.323633 TAGGTGTGCCTAGGCGTACA 60.324 55.000 29.98 25.64 44.90 2.90 R
5789 6476 1.298953 AGCAGGCAAAGGGAGGAATA 58.701 50.000 0.00 0.00 0.00 1.75 R
5802 6489 2.159327 AAAGCACAATCAAAGCAGGC 57.841 45.000 0.00 0.00 0.00 4.85 R
6230 6938 1.490490 ACCAGAGGAGACAACAAAGCA 59.510 47.619 0.00 0.00 0.00 3.91 R
7103 7909 2.733956 TGCCCATTTGAACCACCTATC 58.266 47.619 0.00 0.00 0.00 2.08 R
7263 8069 7.118245 TCACAGTAACAAGAAGTATGCAGATTG 59.882 37.037 0.00 0.00 0.00 2.67 R
8830 10715 0.032952 TTAGGGCGCGCTTGGTATAG 59.967 55.000 32.72 0.00 0.00 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.870363 TCTTCTATTTTTGCTGCAACCAC 58.130 39.130 15.72 0.00 0.00 4.16
83 87 6.013379 AGGTACGGTGCTACTACCATATAGTA 60.013 42.308 0.00 0.00 40.89 1.82
142 147 2.434185 GCTCGGTGATGCAACGGA 60.434 61.111 4.95 0.00 45.36 4.69
172 177 2.622942 GAGATGTGTTTTGCTGGAACCA 59.377 45.455 0.00 0.00 0.00 3.67
855 1511 1.276989 CACCAAGGCAAATCAGGCAAT 59.723 47.619 0.00 0.00 36.37 3.56
870 1526 1.303724 CAATAACCCCGCACCACCA 60.304 57.895 0.00 0.00 0.00 4.17
919 1578 0.858598 TACTCCTCCCTCCCTTCCCA 60.859 60.000 0.00 0.00 0.00 4.37
1206 1873 0.588252 CATTGATCCGTGGGATTCGC 59.412 55.000 0.00 0.00 43.27 4.70
1468 2136 2.737180 CGTGTCTGTGGCTGGAGT 59.263 61.111 0.00 0.00 0.00 3.85
1553 2221 8.746922 TTTTCACTATGTCATGAATGAAAAGC 57.253 30.769 19.48 0.72 39.72 3.51
1692 2360 6.178239 ACTTAATATGTTGTTTCACCGAGC 57.822 37.500 0.00 0.00 0.00 5.03
1882 2550 7.615403 TGTTTAGTGTGCAGATAGAAGATTCT 58.385 34.615 0.07 0.07 41.24 2.40
1889 2557 7.221838 GTGTGCAGATAGAAGATTCTGAGTAAC 59.778 40.741 5.34 0.00 41.53 2.50
1921 2589 5.503927 TCGTCTAGGTAGTTTGTAGGATGT 58.496 41.667 0.00 0.00 0.00 3.06
1966 2634 3.009143 CCTGGAGGCCTTACTACTTTGTT 59.991 47.826 6.77 0.00 0.00 2.83
2157 2825 2.892374 TGTCCTACACATGCAGATTCG 58.108 47.619 0.00 0.00 0.00 3.34
2163 2831 4.025396 CCTACACATGCAGATTCGTTGATC 60.025 45.833 0.00 0.00 0.00 2.92
2319 2988 5.105064 TGAGCTGATTCTCATGTGAAGATGA 60.105 40.000 14.87 0.00 38.11 2.92
2326 2995 2.617308 CTCATGTGAAGATGATGTGGGC 59.383 50.000 0.00 0.00 31.88 5.36
2393 3066 3.052944 TCCAGGTAATTGCAAATAGGGCT 60.053 43.478 1.71 0.00 0.00 5.19
2648 3321 5.319139 CAGTTGCATAAGTCACTTCATTCG 58.681 41.667 0.00 0.00 0.00 3.34
2665 3338 7.611213 TTCATTCGAAGGTAGAAATTCTTCC 57.389 36.000 9.94 10.24 34.54 3.46
2670 3343 6.540083 TCGAAGGTAGAAATTCTTCCCTTTT 58.460 36.000 20.42 8.88 37.00 2.27
2747 3424 7.606135 TTATATCCTTTCACCGATGGACTTA 57.394 36.000 0.00 0.00 0.00 2.24
2788 3469 1.133853 TGCCCAATGCCAAAAGCTTTT 60.134 42.857 18.74 18.74 44.23 2.27
2894 3575 6.098266 ACCTTGGATGCTTTTGTTACTTCTTT 59.902 34.615 0.00 0.00 0.00 2.52
2948 3629 5.482908 CTTACTCCATACAAGCACAGAAGT 58.517 41.667 0.00 0.00 0.00 3.01
2970 3651 3.094572 GTTGTAGTGGCCTACTGTCCTA 58.905 50.000 15.55 0.00 43.38 2.94
3043 3724 8.250143 TGCATCATTTGAGAGAAGGTACTATA 57.750 34.615 0.00 0.00 38.49 1.31
3086 3767 5.479124 AGGCAGCTCTTCAAAAATTTCAT 57.521 34.783 0.00 0.00 0.00 2.57
3211 3892 5.071923 AGGCCTGGTATTATCCAACTCTAAC 59.928 44.000 3.11 0.00 37.01 2.34
3300 3983 7.359262 TGTATGGTTGAAACGAATCTGTTAG 57.641 36.000 0.00 0.00 0.00 2.34
3353 4036 7.377131 GTCTCAAAATAAGTGTCTCAACTTTGC 59.623 37.037 0.00 0.00 40.77 3.68
3969 4653 1.231296 GCCTAGCGCTTATCTTGCCC 61.231 60.000 18.68 0.00 0.00 5.36
3973 4657 0.035056 AGCGCTTATCTTGCCCAAGT 60.035 50.000 2.64 0.00 39.38 3.16
4137 4821 1.228552 TCCCAACTCCCAAGCAAGC 60.229 57.895 0.00 0.00 0.00 4.01
4147 4831 1.380302 CAAGCAAGCTGGGGTAGGT 59.620 57.895 0.00 0.00 39.21 3.08
4165 4849 6.544931 GGGTAGGTTAGATATGAAACCAAACC 59.455 42.308 19.87 19.87 40.22 3.27
4247 4931 3.878237 ATGGATTGCTGATCTCCATGT 57.122 42.857 11.57 0.00 45.75 3.21
4519 5204 4.464951 TCCTCGCTTTCACTTATTACCTCA 59.535 41.667 0.00 0.00 0.00 3.86
4558 5243 0.615850 TTGTATGGCCACACATCGGA 59.384 50.000 19.48 0.00 32.39 4.55
4579 5264 2.427095 ACGTAGCATGTGCATCTCTGTA 59.573 45.455 7.83 0.00 45.16 2.74
4602 5287 3.818210 ACGCTCATTTGTTGGATGTGTTA 59.182 39.130 0.00 0.00 0.00 2.41
4635 5320 4.338879 GGCCAACATTCTGCTCCATATAT 58.661 43.478 0.00 0.00 0.00 0.86
4640 5325 6.882678 CCAACATTCTGCTCCATATATCATCA 59.117 38.462 0.00 0.00 0.00 3.07
4642 5327 7.255199 ACATTCTGCTCCATATATCATCACT 57.745 36.000 0.00 0.00 0.00 3.41
4695 5380 2.335316 AGCTTTTGTGGGACGTTGTA 57.665 45.000 0.00 0.00 0.00 2.41
4963 5648 8.918202 TCCATTACTGGTTACATTGATATTCC 57.082 34.615 0.00 0.00 43.61 3.01
5124 5809 0.679002 TCAGCTGCTCTCAAATGCCC 60.679 55.000 9.47 0.00 0.00 5.36
5147 5832 5.080772 AGGCTAACCTCTGCTGTGAAACA 62.081 47.826 0.00 0.00 46.34 2.83
5186 5871 4.586421 TGGTCTTAGCTGATGAGGTATGAG 59.414 45.833 7.13 0.00 37.15 2.90
5210 5895 8.159229 AGGATGTTCAAAATAAGTACTACCCT 57.841 34.615 0.00 0.00 0.00 4.34
5212 5897 9.543783 GGATGTTCAAAATAAGTACTACCCTAG 57.456 37.037 0.00 0.00 0.00 3.02
5268 5953 7.175104 ACCATAAGTCCATCACTGTATTTGTT 58.825 34.615 0.00 0.00 34.56 2.83
5332 6019 9.449719 AGGGAGTACTTTATTAACATTGACTTG 57.550 33.333 0.00 0.00 0.00 3.16
5348 6035 3.508402 TGACTTGTGTACAGGCTATTCGA 59.492 43.478 0.00 0.00 0.00 3.71
5373 6060 6.332630 TCCTTGCATTTTATAAGCTCTTTGC 58.667 36.000 0.00 0.00 43.29 3.68
5575 6262 4.255833 TGAAGGTTCCATGCAAATTCAC 57.744 40.909 0.00 0.00 0.00 3.18
5607 6294 4.987912 ACTTTTGCAATTAATTGTGGGTCG 59.012 37.500 25.15 13.98 39.88 4.79
5727 6414 7.767198 CGAAGATCCAGTAGTTTATTAACCCAA 59.233 37.037 0.00 0.00 34.71 4.12
5749 6436 6.313658 CCAAGGCAATTAAGAAACCATTTAGC 59.686 38.462 0.00 0.00 0.00 3.09
5789 6476 8.206867 TGTTTATCTTGCTCTCTGTAATAGCAT 58.793 33.333 0.00 0.00 45.09 3.79
5802 6489 7.453393 TCTGTAATAGCATATTCCTCCCTTTG 58.547 38.462 0.00 0.00 0.00 2.77
5905 6612 9.443283 CTTATTTCATACTTGTGCTAATCTTGC 57.557 33.333 0.00 0.00 0.00 4.01
6230 6938 6.163476 TGTTTCAGCATGTTAGTCGATTACT 58.837 36.000 0.00 0.00 38.85 2.24
6348 7056 6.653740 AGGTATGCTACTTGTACCTTGTTTTC 59.346 38.462 0.00 0.00 44.34 2.29
6438 7146 8.978539 CAAGTGCTGCTTATCTAAAATATCGTA 58.021 33.333 0.00 0.00 35.27 3.43
6517 7225 6.724893 TTGTCGATCTTTATCATAGGTCCA 57.275 37.500 0.00 0.00 31.93 4.02
6675 7389 8.484214 TCTTATACAGAACAGAAGGCTGATAT 57.516 34.615 0.00 0.00 45.17 1.63
7103 7909 1.062002 GGCAATCATGTCGGTGTTACG 59.938 52.381 0.00 0.00 0.00 3.18
7263 8069 8.044908 TGAATAACCACACTAAACCCTCTTATC 58.955 37.037 0.00 0.00 0.00 1.75
7602 8410 1.296715 GGTGACATCGCTGAACCCT 59.703 57.895 0.00 0.00 30.89 4.34
7650 8458 9.793252 CATTTCTTAACTTAATGCTTGCTGTAT 57.207 29.630 0.00 0.00 0.00 2.29
7835 8643 5.360714 TCTGTTTGATTTGCTTTGGTCTCTT 59.639 36.000 0.00 0.00 0.00 2.85
7879 8850 3.719268 TCCAAGGTCATGTGCATAACT 57.281 42.857 0.00 0.00 0.00 2.24
8062 9033 5.152623 TGTAATTCTACTGCTTGCTGACT 57.847 39.130 6.50 0.00 0.00 3.41
8301 9272 0.323957 ACTTCGTGGTTCCTAAGCCC 59.676 55.000 0.00 0.00 0.00 5.19
8302 9273 0.613777 CTTCGTGGTTCCTAAGCCCT 59.386 55.000 0.00 0.00 0.00 5.19
8344 9315 7.398332 AGCCAGATTTAACATCTTCATTTCCTT 59.602 33.333 0.00 0.00 0.00 3.36
8372 9343 2.227865 TGGGAGAGTTAATTTTGCGCAC 59.772 45.455 11.12 0.00 0.00 5.34
8393 9364 3.826729 ACCTAATGGTGCCAGAGAAAAAC 59.173 43.478 0.00 0.00 46.51 2.43
8394 9365 3.826157 CCTAATGGTGCCAGAGAAAAACA 59.174 43.478 0.00 0.00 0.00 2.83
8395 9366 4.463891 CCTAATGGTGCCAGAGAAAAACAT 59.536 41.667 0.00 0.00 0.00 2.71
8445 9416 7.433680 AGTGTGTTTTGATTTATTGGAACCTC 58.566 34.615 0.00 0.00 0.00 3.85
8523 9495 0.516877 ACGTGGCGAATGTTCATGTG 59.483 50.000 0.00 0.00 30.47 3.21
8524 9496 0.179192 CGTGGCGAATGTTCATGTGG 60.179 55.000 0.00 0.00 0.00 4.17
8526 9498 0.880441 TGGCGAATGTTCATGTGGTG 59.120 50.000 0.00 0.00 0.00 4.17
8623 9778 9.878599 AAAATGTAGAGTTTCGTTGTTGATAAG 57.121 29.630 0.00 0.00 0.00 1.73
8641 9808 1.101331 AGACGGTAAGGCGACTAAGG 58.899 55.000 0.00 0.00 42.68 2.69
8645 9812 1.202268 CGGTAAGGCGACTAAGGTGAG 60.202 57.143 0.00 0.00 42.68 3.51
8687 10572 1.278238 CGAAGCCTAAAGTGCGTAGG 58.722 55.000 0.00 0.00 41.08 3.18
8690 10575 4.534401 CCTAAAGTGCGTAGGCCC 57.466 61.111 0.00 0.00 38.85 5.80
8691 10576 1.153229 CCTAAAGTGCGTAGGCCCC 60.153 63.158 0.00 0.00 38.85 5.80
8692 10577 1.520787 CTAAAGTGCGTAGGCCCCG 60.521 63.158 0.00 2.92 38.85 5.73
8693 10578 2.234913 CTAAAGTGCGTAGGCCCCGT 62.235 60.000 13.33 0.00 38.85 5.28
8694 10579 1.829523 TAAAGTGCGTAGGCCCCGTT 61.830 55.000 13.33 3.20 38.85 4.44
8695 10580 2.685804 AAAGTGCGTAGGCCCCGTTT 62.686 55.000 13.33 4.43 38.85 3.60
8696 10581 3.428282 GTGCGTAGGCCCCGTTTG 61.428 66.667 13.33 0.00 38.85 2.93
8697 10582 4.708386 TGCGTAGGCCCCGTTTGG 62.708 66.667 13.33 0.00 38.85 3.28
8698 10583 4.397832 GCGTAGGCCCCGTTTGGA 62.398 66.667 13.33 0.00 37.49 3.53
8699 10584 2.587889 CGTAGGCCCCGTTTGGAT 59.412 61.111 0.00 0.00 37.49 3.41
8700 10585 1.078001 CGTAGGCCCCGTTTGGATT 60.078 57.895 0.00 0.00 37.49 3.01
8701 10586 0.178533 CGTAGGCCCCGTTTGGATTA 59.821 55.000 0.00 0.00 37.49 1.75
8702 10587 1.808891 CGTAGGCCCCGTTTGGATTAG 60.809 57.143 0.00 0.00 37.49 1.73
8703 10588 0.181824 TAGGCCCCGTTTGGATTAGC 59.818 55.000 0.00 0.00 37.49 3.09
8704 10589 1.379309 GGCCCCGTTTGGATTAGCA 60.379 57.895 0.00 0.00 37.49 3.49
8705 10590 0.755327 GGCCCCGTTTGGATTAGCAT 60.755 55.000 0.00 0.00 37.49 3.79
8706 10591 1.111277 GCCCCGTTTGGATTAGCATT 58.889 50.000 0.00 0.00 37.49 3.56
8707 10592 1.480545 GCCCCGTTTGGATTAGCATTT 59.519 47.619 0.00 0.00 37.49 2.32
8708 10593 2.093711 GCCCCGTTTGGATTAGCATTTT 60.094 45.455 0.00 0.00 37.49 1.82
8709 10594 3.780902 CCCCGTTTGGATTAGCATTTTC 58.219 45.455 0.00 0.00 37.49 2.29
8710 10595 3.447229 CCCCGTTTGGATTAGCATTTTCT 59.553 43.478 0.00 0.00 37.49 2.52
8711 10596 4.081697 CCCCGTTTGGATTAGCATTTTCTT 60.082 41.667 0.00 0.00 37.49 2.52
8712 10597 5.478407 CCCGTTTGGATTAGCATTTTCTTT 58.522 37.500 0.00 0.00 37.49 2.52
8713 10598 5.348451 CCCGTTTGGATTAGCATTTTCTTTG 59.652 40.000 0.00 0.00 37.49 2.77
8714 10599 5.925969 CCGTTTGGATTAGCATTTTCTTTGT 59.074 36.000 0.00 0.00 37.49 2.83
8715 10600 7.087639 CCGTTTGGATTAGCATTTTCTTTGTA 58.912 34.615 0.00 0.00 37.49 2.41
8716 10601 7.596995 CCGTTTGGATTAGCATTTTCTTTGTAA 59.403 33.333 0.00 0.00 37.49 2.41
8717 10602 9.139174 CGTTTGGATTAGCATTTTCTTTGTAAT 57.861 29.630 0.00 0.00 0.00 1.89
8722 10607 9.516314 GGATTAGCATTTTCTTTGTAATACACC 57.484 33.333 0.00 0.00 0.00 4.16
8725 10610 7.524717 AGCATTTTCTTTGTAATACACCTGT 57.475 32.000 0.00 0.00 0.00 4.00
8726 10611 8.630054 AGCATTTTCTTTGTAATACACCTGTA 57.370 30.769 0.00 0.00 34.67 2.74
8727 10612 9.073475 AGCATTTTCTTTGTAATACACCTGTAA 57.927 29.630 0.00 0.00 33.76 2.41
8728 10613 9.685828 GCATTTTCTTTGTAATACACCTGTAAA 57.314 29.630 0.00 0.00 33.76 2.01
8746 10631 7.365840 CTGTAAAAGAAATACAGGTCTCCAC 57.634 40.000 5.92 0.00 44.14 4.02
8747 10632 6.235664 TGTAAAAGAAATACAGGTCTCCACC 58.764 40.000 0.00 0.00 44.19 4.61
8764 10649 2.935505 CCGGTCGGTTTCATTTCCA 58.064 52.632 0.55 0.00 0.00 3.53
8765 10650 0.802494 CCGGTCGGTTTCATTTCCAG 59.198 55.000 0.55 0.00 0.00 3.86
8766 10651 0.168128 CGGTCGGTTTCATTTCCAGC 59.832 55.000 0.00 0.00 0.00 4.85
8767 10652 1.534729 GGTCGGTTTCATTTCCAGCT 58.465 50.000 0.00 0.00 0.00 4.24
8768 10653 1.200020 GGTCGGTTTCATTTCCAGCTG 59.800 52.381 6.78 6.78 0.00 4.24
8769 10654 1.200020 GTCGGTTTCATTTCCAGCTGG 59.800 52.381 27.87 27.87 0.00 4.85
8770 10655 1.073125 TCGGTTTCATTTCCAGCTGGA 59.927 47.619 32.00 32.00 43.73 3.86
8785 10670 1.619654 CTGGAAAACAGTCATGCCCA 58.380 50.000 0.00 0.00 42.42 5.36
8786 10671 1.542915 CTGGAAAACAGTCATGCCCAG 59.457 52.381 0.00 0.00 42.42 4.45
8787 10672 1.133513 TGGAAAACAGTCATGCCCAGT 60.134 47.619 0.00 0.00 0.00 4.00
8788 10673 2.107378 TGGAAAACAGTCATGCCCAGTA 59.893 45.455 0.00 0.00 0.00 2.74
8789 10674 3.153919 GGAAAACAGTCATGCCCAGTAA 58.846 45.455 0.00 0.00 0.00 2.24
8790 10675 3.572255 GGAAAACAGTCATGCCCAGTAAA 59.428 43.478 0.00 0.00 0.00 2.01
8791 10676 4.038642 GGAAAACAGTCATGCCCAGTAAAA 59.961 41.667 0.00 0.00 0.00 1.52
8792 10677 5.279456 GGAAAACAGTCATGCCCAGTAAAAT 60.279 40.000 0.00 0.00 0.00 1.82
8793 10678 6.071616 GGAAAACAGTCATGCCCAGTAAAATA 60.072 38.462 0.00 0.00 0.00 1.40
8794 10679 5.897377 AACAGTCATGCCCAGTAAAATAC 57.103 39.130 0.00 0.00 0.00 1.89
8795 10680 4.917385 ACAGTCATGCCCAGTAAAATACA 58.083 39.130 0.00 0.00 0.00 2.29
8796 10681 4.700213 ACAGTCATGCCCAGTAAAATACAC 59.300 41.667 0.00 0.00 0.00 2.90
8797 10682 4.943705 CAGTCATGCCCAGTAAAATACACT 59.056 41.667 0.00 0.00 0.00 3.55
8798 10683 5.415701 CAGTCATGCCCAGTAAAATACACTT 59.584 40.000 0.00 0.00 0.00 3.16
8799 10684 5.415701 AGTCATGCCCAGTAAAATACACTTG 59.584 40.000 0.00 0.00 0.00 3.16
8800 10685 5.183140 GTCATGCCCAGTAAAATACACTTGT 59.817 40.000 0.00 0.00 0.00 3.16
8801 10686 6.373216 GTCATGCCCAGTAAAATACACTTGTA 59.627 38.462 0.00 0.00 34.67 2.41
8802 10687 6.943146 TCATGCCCAGTAAAATACACTTGTAA 59.057 34.615 0.00 0.00 33.76 2.41
8803 10688 7.448777 TCATGCCCAGTAAAATACACTTGTAAA 59.551 33.333 0.00 0.00 33.76 2.01
8804 10689 7.768807 TGCCCAGTAAAATACACTTGTAAAT 57.231 32.000 0.00 0.00 33.76 1.40
8805 10690 7.822658 TGCCCAGTAAAATACACTTGTAAATC 58.177 34.615 0.00 0.00 33.76 2.17
8806 10691 7.668052 TGCCCAGTAAAATACACTTGTAAATCT 59.332 33.333 0.00 0.00 33.76 2.40
8807 10692 8.520351 GCCCAGTAAAATACACTTGTAAATCTT 58.480 33.333 0.00 0.00 33.76 2.40
8816 10701 9.436957 AATACACTTGTAAATCTTACACCTCTG 57.563 33.333 0.00 0.00 33.76 3.35
8817 10702 6.827727 ACACTTGTAAATCTTACACCTCTGT 58.172 36.000 0.00 0.00 0.00 3.41
8818 10703 7.959175 ACACTTGTAAATCTTACACCTCTGTA 58.041 34.615 0.00 0.00 0.00 2.74
8819 10704 8.594550 ACACTTGTAAATCTTACACCTCTGTAT 58.405 33.333 0.00 0.00 32.70 2.29
8820 10705 9.436957 CACTTGTAAATCTTACACCTCTGTATT 57.563 33.333 0.00 0.00 32.70 1.89
8821 10706 9.436957 ACTTGTAAATCTTACACCTCTGTATTG 57.563 33.333 0.00 0.00 32.70 1.90
8822 10707 9.653287 CTTGTAAATCTTACACCTCTGTATTGA 57.347 33.333 0.00 0.00 32.70 2.57
8829 10714 8.997621 TCTTACACCTCTGTATTGAATTACAC 57.002 34.615 0.00 0.00 32.70 2.90
8830 10715 8.038944 TCTTACACCTCTGTATTGAATTACACC 58.961 37.037 0.00 0.00 32.70 4.16
8831 10716 6.374417 ACACCTCTGTATTGAATTACACCT 57.626 37.500 0.00 0.00 0.00 4.00
8832 10717 7.490657 ACACCTCTGTATTGAATTACACCTA 57.509 36.000 0.00 0.00 0.00 3.08
8833 10718 8.090788 ACACCTCTGTATTGAATTACACCTAT 57.909 34.615 0.00 0.00 0.00 2.57
8834 10719 9.209048 ACACCTCTGTATTGAATTACACCTATA 57.791 33.333 0.00 0.00 0.00 1.31
8835 10720 9.477484 CACCTCTGTATTGAATTACACCTATAC 57.523 37.037 0.00 0.00 0.00 1.47
8836 10721 8.648693 ACCTCTGTATTGAATTACACCTATACC 58.351 37.037 0.00 0.00 0.00 2.73
8837 10722 8.647796 CCTCTGTATTGAATTACACCTATACCA 58.352 37.037 0.00 0.00 0.00 3.25
8840 10725 8.671384 TGTATTGAATTACACCTATACCAAGC 57.329 34.615 0.00 0.00 0.00 4.01
8841 10726 6.861065 ATTGAATTACACCTATACCAAGCG 57.139 37.500 0.00 0.00 0.00 4.68
8842 10727 4.124238 TGAATTACACCTATACCAAGCGC 58.876 43.478 0.00 0.00 0.00 5.92
8843 10728 2.212869 TTACACCTATACCAAGCGCG 57.787 50.000 0.00 0.00 0.00 6.86
8844 10729 0.249155 TACACCTATACCAAGCGCGC 60.249 55.000 26.66 26.66 0.00 6.86
8845 10730 2.108362 ACCTATACCAAGCGCGCC 59.892 61.111 30.33 10.31 0.00 6.53
8846 10731 2.665185 CCTATACCAAGCGCGCCC 60.665 66.667 30.33 0.16 0.00 6.13
8922 10807 0.543749 AGTGAGGAGTGCTTATGCCC 59.456 55.000 0.00 0.00 38.71 5.36
8927 10812 1.819632 GAGTGCTTATGCCCCGGTG 60.820 63.158 0.00 0.00 38.71 4.94
9007 11257 9.334693 GCAGAGTGTTTCATACAGATTTTTAAG 57.665 33.333 0.00 0.00 37.45 1.85
9038 11288 3.961480 TGACGGATAGGGATGCATAAG 57.039 47.619 0.00 0.00 0.00 1.73
9040 11290 3.646162 TGACGGATAGGGATGCATAAGTT 59.354 43.478 0.00 0.00 0.00 2.66
9041 11291 3.997021 GACGGATAGGGATGCATAAGTTG 59.003 47.826 0.00 0.00 0.00 3.16
9042 11292 3.391296 ACGGATAGGGATGCATAAGTTGT 59.609 43.478 0.00 0.00 0.00 3.32
9045 11295 1.767759 AGGGATGCATAAGTTGTGGC 58.232 50.000 0.00 0.00 0.00 5.01
9046 11296 1.285962 AGGGATGCATAAGTTGTGGCT 59.714 47.619 0.00 0.00 0.00 4.75
9047 11297 2.102578 GGGATGCATAAGTTGTGGCTT 58.897 47.619 0.00 0.00 0.00 4.35
9072 11360 2.945008 CAGTTTTCTCACAAGCACCTCA 59.055 45.455 0.00 0.00 0.00 3.86
9082 11370 1.264749 AAGCACCTCATAGCACCGGA 61.265 55.000 9.46 0.00 0.00 5.14
9083 11371 1.220749 GCACCTCATAGCACCGGAA 59.779 57.895 9.46 0.00 0.00 4.30
9084 11372 0.811616 GCACCTCATAGCACCGGAAG 60.812 60.000 9.46 0.15 0.00 3.46
9085 11373 0.811616 CACCTCATAGCACCGGAAGC 60.812 60.000 9.46 12.61 0.00 3.86
9086 11374 1.264749 ACCTCATAGCACCGGAAGCA 61.265 55.000 21.98 10.90 0.00 3.91
9087 11375 0.107703 CCTCATAGCACCGGAAGCAA 60.108 55.000 21.98 7.01 0.00 3.91
9088 11376 1.678728 CCTCATAGCACCGGAAGCAAA 60.679 52.381 21.98 12.13 0.00 3.68
9089 11377 2.083774 CTCATAGCACCGGAAGCAAAA 58.916 47.619 21.98 10.05 0.00 2.44
9090 11378 1.810151 TCATAGCACCGGAAGCAAAAC 59.190 47.619 21.98 0.00 0.00 2.43
9091 11379 1.812571 CATAGCACCGGAAGCAAAACT 59.187 47.619 21.98 6.92 0.00 2.66
9092 11380 1.975660 TAGCACCGGAAGCAAAACTT 58.024 45.000 21.98 6.32 42.98 2.66
9093 11381 1.111277 AGCACCGGAAGCAAAACTTT 58.889 45.000 21.98 0.93 39.29 2.66
9094 11382 1.202405 AGCACCGGAAGCAAAACTTTG 60.202 47.619 21.98 1.53 39.29 2.77
9214 11503 1.544724 TGGCCTAAACAATGGTGAGC 58.455 50.000 3.32 0.00 0.00 4.26
9217 11506 3.245087 TGGCCTAAACAATGGTGAGCTTA 60.245 43.478 3.32 0.00 0.00 3.09
9218 11507 3.378427 GGCCTAAACAATGGTGAGCTTAG 59.622 47.826 0.00 0.00 0.00 2.18
9219 11508 4.010349 GCCTAAACAATGGTGAGCTTAGT 58.990 43.478 0.00 0.00 0.00 2.24
9222 11511 6.612306 CCTAAACAATGGTGAGCTTAGTTTC 58.388 40.000 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 87 2.229784 CTCCTTCGCTTCCAGCAAAAAT 59.770 45.455 0.00 0.00 42.58 1.82
142 147 0.599204 AAACACATCTCGACGCCGTT 60.599 50.000 0.00 0.00 37.05 4.44
453 463 2.223845 CACATGACATTGACGTCTGCAA 59.776 45.455 17.92 3.65 36.82 4.08
459 469 1.298157 CCGCCACATGACATTGACGT 61.298 55.000 0.00 0.00 0.00 4.34
855 1511 2.527123 TCTGGTGGTGCGGGGTTA 60.527 61.111 0.00 0.00 0.00 2.85
870 1526 1.213926 GGGTTTGATGGGCTGATCTCT 59.786 52.381 0.00 0.00 0.00 3.10
1206 1873 2.100631 CGGGAACTTGTAGGCGCTG 61.101 63.158 7.64 0.00 0.00 5.18
1468 2136 2.166821 GCAACCAAATGCATCCAACA 57.833 45.000 0.00 0.00 45.70 3.33
1553 2221 6.042143 ACAGAAAACAAAATTAGGTGTGCAG 58.958 36.000 0.00 0.00 0.00 4.41
1722 2390 6.210796 ACTGAAAAGTGGCGGTAATAAAAAC 58.789 36.000 0.00 0.00 0.00 2.43
1882 2550 5.354513 CCTAGACGAGACATTGAGTTACTCA 59.645 44.000 11.42 11.42 38.87 3.41
1889 2557 5.821516 AACTACCTAGACGAGACATTGAG 57.178 43.478 0.00 0.00 0.00 3.02
1921 2589 8.875803 CAGGCATACGTGATACTTAAGTTAAAA 58.124 33.333 14.49 0.00 33.41 1.52
2201 2869 7.014615 GGAAGAGATTGCAAACCCATACAATAT 59.985 37.037 1.71 0.00 33.07 1.28
2202 2870 6.321181 GGAAGAGATTGCAAACCCATACAATA 59.679 38.462 1.71 0.00 33.07 1.90
2285 2954 6.954487 TGAGAATCAGCTCAATGCATTAAT 57.046 33.333 12.53 0.00 42.56 1.40
2319 2988 0.185901 ACACCAAACTGAGCCCACAT 59.814 50.000 0.00 0.00 0.00 3.21
2326 2995 4.704540 TGGCCATATTAACACCAAACTGAG 59.295 41.667 0.00 0.00 0.00 3.35
2393 3066 4.697514 GCTTATGTCCAAGTATCTCAGCA 58.302 43.478 0.00 0.00 0.00 4.41
2648 3321 7.526142 ACAAAAGGGAAGAATTTCTACCTTC 57.474 36.000 24.33 10.19 40.72 3.46
2665 3338 7.029563 AGCTAATATTCTCGCAAAACAAAAGG 58.970 34.615 0.00 0.00 0.00 3.11
2670 3343 9.502145 CAAAATAGCTAATATTCTCGCAAAACA 57.498 29.630 0.00 0.00 32.71 2.83
2774 3455 1.494296 ACCCCAAAAAGCTTTTGGCAT 59.506 42.857 24.50 14.21 45.70 4.40
2788 3469 4.479156 AAATCTTTTACCCAGACCCCAA 57.521 40.909 0.00 0.00 0.00 4.12
2894 3575 1.470051 TGCAGCCACGACATCTACTA 58.530 50.000 0.00 0.00 0.00 1.82
3043 3724 8.267620 TGCCTATTAGCTATATCCATTAGCAT 57.732 34.615 0.00 0.00 39.16 3.79
3086 3767 4.282957 TCTTACATTCCCAAAATTGCAGCA 59.717 37.500 0.00 0.00 0.00 4.41
3139 3820 0.039035 GGGTGGGGCATCAAGTTACA 59.961 55.000 0.00 0.00 0.00 2.41
3211 3892 8.980481 ACCCACAGATTAATACAAAGAATAGG 57.020 34.615 0.00 0.00 0.00 2.57
3300 3983 4.201822 GGGAGTATTCGAGTGACAAATTGC 60.202 45.833 0.00 0.00 0.00 3.56
3522 4205 2.210116 GCATCTTGGGTATGTGTACGG 58.790 52.381 0.00 0.00 0.00 4.02
3651 4334 5.853936 AGTGCAATACAATCGATAAGGCTA 58.146 37.500 0.00 0.00 0.00 3.93
3744 4427 8.698854 GCGATTTGACAAATGAAAGAACATTAA 58.301 29.630 18.00 0.00 39.19 1.40
3768 4451 0.941463 GATACTCATGTCCGCCTGCG 60.941 60.000 4.20 4.20 39.44 5.18
3969 4653 0.037697 TGTGCCTAGGCGTACACTTG 60.038 55.000 28.28 0.00 45.51 3.16
3973 4657 0.323633 TAGGTGTGCCTAGGCGTACA 60.324 55.000 29.98 25.64 44.90 2.90
4137 4821 5.368523 TGGTTTCATATCTAACCTACCCCAG 59.631 44.000 13.83 0.00 43.36 4.45
4147 4831 7.747155 TGTTTCGGTTTGGTTTCATATCTAA 57.253 32.000 0.00 0.00 0.00 2.10
4247 4931 4.362677 AGGTTTGGCTCTTGATAGGACTA 58.637 43.478 0.00 0.00 0.00 2.59
4334 5019 3.118371 CGAAAATACTAAGAGGGGCAGGT 60.118 47.826 0.00 0.00 0.00 4.00
4529 5214 1.339631 TGGCCATACAAGAAAGGACCG 60.340 52.381 0.00 0.00 0.00 4.79
4558 5243 1.205655 ACAGAGATGCACATGCTACGT 59.794 47.619 5.31 0.00 42.66 3.57
4579 5264 2.622942 ACACATCCAACAAATGAGCGTT 59.377 40.909 0.00 0.00 0.00 4.84
4602 5287 4.463891 CAGAATGTTGGCCCACTAAAAGAT 59.536 41.667 8.65 0.00 0.00 2.40
4635 5320 3.273434 GCAGCAATTAGACCAGTGATGA 58.727 45.455 0.00 0.00 28.91 2.92
4640 5325 0.995024 AGGGCAGCAATTAGACCAGT 59.005 50.000 0.00 0.00 0.00 4.00
4642 5327 4.231273 TCTATAGGGCAGCAATTAGACCA 58.769 43.478 0.00 0.00 0.00 4.02
4963 5648 9.793252 TCAGAGAAGACAAAAGATTTGAAAAAG 57.207 29.630 9.62 0.00 0.00 2.27
5147 5832 4.618920 AGACCAAAAGACCACGTAGATT 57.381 40.909 0.00 0.00 0.00 2.40
5153 5838 2.480419 CAGCTAAGACCAAAAGACCACG 59.520 50.000 0.00 0.00 0.00 4.94
5186 5871 9.543783 CTAGGGTAGTACTTATTTTGAACATCC 57.456 37.037 0.00 0.00 0.00 3.51
5332 6019 4.051922 CAAGGATCGAATAGCCTGTACAC 58.948 47.826 0.00 0.00 45.74 2.90
5348 6035 6.982724 GCAAAGAGCTTATAAAATGCAAGGAT 59.017 34.615 0.00 0.00 41.15 3.24
5373 6060 6.867662 ACCAAATAGAAGAAATAGGATGCG 57.132 37.500 0.00 0.00 0.00 4.73
5575 6262 9.199982 ACAATTAATTGCAAAAGTCATCTCAAG 57.800 29.630 24.82 0.00 41.38 3.02
5727 6414 5.721480 AGGCTAAATGGTTTCTTAATTGCCT 59.279 36.000 0.00 0.00 40.64 4.75
5749 6436 8.462016 AGCAAGATAAACAATTAGCAACTTAGG 58.538 33.333 0.00 0.00 29.74 2.69
5789 6476 1.298953 AGCAGGCAAAGGGAGGAATA 58.701 50.000 0.00 0.00 0.00 1.75
5802 6489 2.159327 AAAGCACAATCAAAGCAGGC 57.841 45.000 0.00 0.00 0.00 4.85
6230 6938 1.490490 ACCAGAGGAGACAACAAAGCA 59.510 47.619 0.00 0.00 0.00 3.91
6494 7202 6.724893 TGGACCTATGATAAAGATCGACAA 57.275 37.500 0.00 0.00 34.49 3.18
6550 7258 8.302515 TGTACACCTAACTAATAAAGCTAGCT 57.697 34.615 12.68 12.68 0.00 3.32
6573 7287 5.841957 AGAGTTTCAAAATGTCTTGCTGT 57.158 34.783 0.00 0.00 0.00 4.40
7103 7909 2.733956 TGCCCATTTGAACCACCTATC 58.266 47.619 0.00 0.00 0.00 2.08
7263 8069 7.118245 TCACAGTAACAAGAAGTATGCAGATTG 59.882 37.037 0.00 0.00 0.00 2.67
7594 8402 5.957842 TGCATTTTACTTACAGGGTTCAG 57.042 39.130 0.00 0.00 0.00 3.02
7640 8448 2.017049 CCCACAGGTTATACAGCAAGC 58.983 52.381 0.00 0.00 0.00 4.01
7650 8458 8.429237 AATTAAACATGAATTCCCACAGGTTA 57.571 30.769 0.00 0.00 39.46 2.85
7771 8579 4.228912 AGAGACCAAAGCAAATCAAACG 57.771 40.909 0.00 0.00 0.00 3.60
7835 8643 7.926555 GGAAGCTAGTCTAAAGTACATGCAATA 59.073 37.037 0.00 0.00 0.00 1.90
7879 8850 3.964688 TCCAGCCGAGATATGAAAGGTAA 59.035 43.478 0.00 0.00 0.00 2.85
8062 9033 3.081061 ACCATGATTTTAAGCGCACAGA 58.919 40.909 11.47 0.00 0.00 3.41
8142 9113 2.949177 TAAAGCAGCTTCCTGGAACA 57.051 45.000 8.48 0.00 39.54 3.18
8143 9114 2.095008 GCTTAAAGCAGCTTCCTGGAAC 60.095 50.000 8.48 3.12 41.89 3.62
8145 9116 1.614317 GGCTTAAAGCAGCTTCCTGGA 60.614 52.381 8.48 0.00 44.75 3.86
8297 9268 1.562475 TGCCTTATTTACGGAAGGGCT 59.438 47.619 13.91 0.00 42.24 5.19
8298 9269 2.047002 TGCCTTATTTACGGAAGGGC 57.953 50.000 8.25 8.25 42.24 5.19
8301 9272 3.013921 TGGCTTGCCTTATTTACGGAAG 58.986 45.455 13.18 0.00 0.00 3.46
8302 9273 3.013921 CTGGCTTGCCTTATTTACGGAA 58.986 45.455 13.18 0.00 0.00 4.30
8344 9315 1.668826 ATTAACTCTCCCAGTGGGCA 58.331 50.000 24.75 11.40 43.94 5.36
8372 9343 3.826157 TGTTTTTCTCTGGCACCATTAGG 59.174 43.478 0.00 0.00 42.21 2.69
8473 9445 5.924475 AGTTGGCGTGCTGATAATAATAC 57.076 39.130 0.00 0.00 0.00 1.89
8474 9446 6.935741 AAAGTTGGCGTGCTGATAATAATA 57.064 33.333 0.00 0.00 0.00 0.98
8475 9447 5.835113 AAAGTTGGCGTGCTGATAATAAT 57.165 34.783 0.00 0.00 0.00 1.28
8476 9448 5.637006 AAAAGTTGGCGTGCTGATAATAA 57.363 34.783 0.00 0.00 0.00 1.40
8523 9495 7.143340 TGATTACAATATACGTAGCACTCACC 58.857 38.462 0.08 0.00 0.00 4.02
8524 9496 8.639428 CATGATTACAATATACGTAGCACTCAC 58.361 37.037 0.08 0.00 0.00 3.51
8526 9498 8.744008 ACATGATTACAATATACGTAGCACTC 57.256 34.615 0.00 0.00 0.00 3.51
8605 9760 4.446719 ACCGTCTTATCAACAACGAAACTC 59.553 41.667 0.00 0.00 37.31 3.01
8607 9762 4.720530 ACCGTCTTATCAACAACGAAAC 57.279 40.909 0.00 0.00 37.31 2.78
8608 9763 5.406175 CCTTACCGTCTTATCAACAACGAAA 59.594 40.000 0.00 0.00 37.31 3.46
8609 9764 4.925054 CCTTACCGTCTTATCAACAACGAA 59.075 41.667 0.00 0.00 37.31 3.85
8610 9765 4.487948 CCTTACCGTCTTATCAACAACGA 58.512 43.478 0.00 0.00 37.31 3.85
8611 9766 3.061697 GCCTTACCGTCTTATCAACAACG 59.938 47.826 0.00 0.00 35.01 4.10
8612 9767 3.061697 CGCCTTACCGTCTTATCAACAAC 59.938 47.826 0.00 0.00 0.00 3.32
8613 9768 3.056678 TCGCCTTACCGTCTTATCAACAA 60.057 43.478 0.00 0.00 0.00 2.83
8614 9769 2.492881 TCGCCTTACCGTCTTATCAACA 59.507 45.455 0.00 0.00 0.00 3.33
8615 9770 2.856557 GTCGCCTTACCGTCTTATCAAC 59.143 50.000 0.00 0.00 0.00 3.18
8616 9771 2.756760 AGTCGCCTTACCGTCTTATCAA 59.243 45.455 0.00 0.00 0.00 2.57
8617 9772 2.372264 AGTCGCCTTACCGTCTTATCA 58.628 47.619 0.00 0.00 0.00 2.15
8618 9773 4.535116 CTTAGTCGCCTTACCGTCTTATC 58.465 47.826 0.00 0.00 0.00 1.75
8619 9774 3.317430 CCTTAGTCGCCTTACCGTCTTAT 59.683 47.826 0.00 0.00 0.00 1.73
8620 9775 2.684881 CCTTAGTCGCCTTACCGTCTTA 59.315 50.000 0.00 0.00 0.00 2.10
8621 9776 1.475682 CCTTAGTCGCCTTACCGTCTT 59.524 52.381 0.00 0.00 0.00 3.01
8622 9777 1.101331 CCTTAGTCGCCTTACCGTCT 58.899 55.000 0.00 0.00 0.00 4.18
8623 9778 0.813821 ACCTTAGTCGCCTTACCGTC 59.186 55.000 0.00 0.00 0.00 4.79
8641 9808 0.675633 AGCAAATGGTTGGTGCTCAC 59.324 50.000 0.00 0.00 45.32 3.51
8684 10569 0.181824 GCTAATCCAAACGGGGCCTA 59.818 55.000 0.84 0.00 37.22 3.93
8685 10570 1.076995 GCTAATCCAAACGGGGCCT 60.077 57.895 0.84 0.00 37.22 5.19
8686 10571 0.755327 ATGCTAATCCAAACGGGGCC 60.755 55.000 0.00 0.00 37.22 5.80
8687 10572 1.111277 AATGCTAATCCAAACGGGGC 58.889 50.000 0.00 0.00 37.22 5.80
8688 10573 3.447229 AGAAAATGCTAATCCAAACGGGG 59.553 43.478 0.00 0.00 37.22 5.73
8689 10574 4.718940 AGAAAATGCTAATCCAAACGGG 57.281 40.909 0.00 0.00 38.37 5.28
8690 10575 5.925969 ACAAAGAAAATGCTAATCCAAACGG 59.074 36.000 0.00 0.00 0.00 4.44
8691 10576 8.514136 TTACAAAGAAAATGCTAATCCAAACG 57.486 30.769 0.00 0.00 0.00 3.60
8696 10581 9.516314 GGTGTATTACAAAGAAAATGCTAATCC 57.484 33.333 0.00 0.00 0.00 3.01
8699 10584 9.073475 ACAGGTGTATTACAAAGAAAATGCTAA 57.927 29.630 0.00 0.00 0.00 3.09
8700 10585 8.630054 ACAGGTGTATTACAAAGAAAATGCTA 57.370 30.769 0.00 0.00 0.00 3.49
8701 10586 7.524717 ACAGGTGTATTACAAAGAAAATGCT 57.475 32.000 0.00 0.00 0.00 3.79
8702 10587 9.685828 TTTACAGGTGTATTACAAAGAAAATGC 57.314 29.630 0.00 0.00 0.00 3.56
8722 10607 6.371825 GGTGGAGACCTGTATTTCTTTTACAG 59.628 42.308 4.29 4.29 43.97 2.74
8723 10608 6.235664 GGTGGAGACCTGTATTTCTTTTACA 58.764 40.000 0.00 0.00 39.47 2.41
8724 10609 5.350640 CGGTGGAGACCTGTATTTCTTTTAC 59.649 44.000 0.00 0.00 40.58 2.01
8725 10610 5.484715 CGGTGGAGACCTGTATTTCTTTTA 58.515 41.667 0.00 0.00 40.58 1.52
8726 10611 4.324267 CGGTGGAGACCTGTATTTCTTTT 58.676 43.478 0.00 0.00 40.58 2.27
8727 10612 3.307480 CCGGTGGAGACCTGTATTTCTTT 60.307 47.826 0.00 0.00 40.58 2.52
8728 10613 2.236395 CCGGTGGAGACCTGTATTTCTT 59.764 50.000 0.00 0.00 40.58 2.52
8729 10614 1.831736 CCGGTGGAGACCTGTATTTCT 59.168 52.381 0.00 0.00 40.58 2.52
8730 10615 1.553704 ACCGGTGGAGACCTGTATTTC 59.446 52.381 6.12 0.00 37.88 2.17
8731 10616 1.553704 GACCGGTGGAGACCTGTATTT 59.446 52.381 14.63 0.00 39.63 1.40
8732 10617 1.192428 GACCGGTGGAGACCTGTATT 58.808 55.000 14.63 0.00 39.63 1.89
8733 10618 1.035932 CGACCGGTGGAGACCTGTAT 61.036 60.000 14.63 0.00 39.63 2.29
8734 10619 1.676635 CGACCGGTGGAGACCTGTA 60.677 63.158 14.63 0.00 39.63 2.74
8735 10620 2.989824 CGACCGGTGGAGACCTGT 60.990 66.667 14.63 0.00 42.05 4.00
8736 10621 3.760035 CCGACCGGTGGAGACCTG 61.760 72.222 19.32 0.00 40.58 4.00
8746 10631 0.802494 CTGGAAATGAAACCGACCGG 59.198 55.000 6.94 6.94 42.03 5.28
8747 10632 0.168128 GCTGGAAATGAAACCGACCG 59.832 55.000 0.00 0.00 0.00 4.79
8748 10633 1.200020 CAGCTGGAAATGAAACCGACC 59.800 52.381 5.57 0.00 0.00 4.79
8749 10634 1.200020 CCAGCTGGAAATGAAACCGAC 59.800 52.381 29.88 0.00 37.39 4.79
8750 10635 1.073125 TCCAGCTGGAAATGAAACCGA 59.927 47.619 33.41 5.54 42.18 4.69
8751 10636 1.533625 TCCAGCTGGAAATGAAACCG 58.466 50.000 33.41 2.12 42.18 4.44
8761 10646 2.507484 CATGACTGTTTTCCAGCTGGA 58.493 47.619 32.00 32.00 45.68 3.86
8762 10647 1.068055 GCATGACTGTTTTCCAGCTGG 60.068 52.381 27.87 27.87 45.68 4.85
8763 10648 1.068055 GGCATGACTGTTTTCCAGCTG 60.068 52.381 6.78 6.78 45.68 4.24
8764 10649 1.251251 GGCATGACTGTTTTCCAGCT 58.749 50.000 0.00 0.00 45.68 4.24
8765 10650 0.244721 GGGCATGACTGTTTTCCAGC 59.755 55.000 0.00 0.00 45.68 4.85
8767 10652 1.133513 ACTGGGCATGACTGTTTTCCA 60.134 47.619 0.00 0.00 0.00 3.53
8768 10653 1.620822 ACTGGGCATGACTGTTTTCC 58.379 50.000 0.00 0.00 0.00 3.13
8769 10654 4.846779 TTTACTGGGCATGACTGTTTTC 57.153 40.909 0.00 0.00 0.00 2.29
8770 10655 5.806654 ATTTTACTGGGCATGACTGTTTT 57.193 34.783 0.00 0.00 0.00 2.43
8771 10656 5.772672 TGTATTTTACTGGGCATGACTGTTT 59.227 36.000 0.00 0.00 0.00 2.83
8772 10657 5.183140 GTGTATTTTACTGGGCATGACTGTT 59.817 40.000 0.00 0.00 0.00 3.16
8773 10658 4.700213 GTGTATTTTACTGGGCATGACTGT 59.300 41.667 0.00 0.21 0.00 3.55
8774 10659 4.943705 AGTGTATTTTACTGGGCATGACTG 59.056 41.667 0.00 0.00 0.00 3.51
8775 10660 5.179452 AGTGTATTTTACTGGGCATGACT 57.821 39.130 0.00 0.00 0.00 3.41
8776 10661 5.183140 ACAAGTGTATTTTACTGGGCATGAC 59.817 40.000 0.00 0.00 0.00 3.06
8777 10662 5.321102 ACAAGTGTATTTTACTGGGCATGA 58.679 37.500 0.00 0.00 0.00 3.07
8778 10663 5.643379 ACAAGTGTATTTTACTGGGCATG 57.357 39.130 0.00 0.00 0.00 4.06
8779 10664 7.768807 TTTACAAGTGTATTTTACTGGGCAT 57.231 32.000 0.00 0.00 0.00 4.40
8780 10665 7.668052 AGATTTACAAGTGTATTTTACTGGGCA 59.332 33.333 0.00 0.00 0.00 5.36
8781 10666 8.051901 AGATTTACAAGTGTATTTTACTGGGC 57.948 34.615 0.00 0.00 0.00 5.36
8790 10675 9.436957 CAGAGGTGTAAGATTTACAAGTGTATT 57.563 33.333 3.44 0.00 0.00 1.89
8791 10676 8.594550 ACAGAGGTGTAAGATTTACAAGTGTAT 58.405 33.333 3.44 0.00 34.05 2.29
8792 10677 7.959175 ACAGAGGTGTAAGATTTACAAGTGTA 58.041 34.615 3.44 0.00 34.05 2.90
8793 10678 6.827727 ACAGAGGTGTAAGATTTACAAGTGT 58.172 36.000 3.44 3.24 34.05 3.55
8794 10679 9.436957 AATACAGAGGTGTAAGATTTACAAGTG 57.563 33.333 3.44 2.74 42.54 3.16
8795 10680 9.436957 CAATACAGAGGTGTAAGATTTACAAGT 57.563 33.333 3.44 2.06 42.54 3.16
8796 10681 9.653287 TCAATACAGAGGTGTAAGATTTACAAG 57.347 33.333 3.44 0.00 42.54 3.16
8803 10688 9.601217 GTGTAATTCAATACAGAGGTGTAAGAT 57.399 33.333 0.00 0.00 42.54 2.40
8804 10689 8.038944 GGTGTAATTCAATACAGAGGTGTAAGA 58.961 37.037 0.00 0.00 42.54 2.10
8805 10690 8.041323 AGGTGTAATTCAATACAGAGGTGTAAG 58.959 37.037 0.00 0.00 42.54 2.34
8806 10691 7.913789 AGGTGTAATTCAATACAGAGGTGTAA 58.086 34.615 0.00 0.00 42.54 2.41
8807 10692 7.490657 AGGTGTAATTCAATACAGAGGTGTA 57.509 36.000 0.00 0.00 43.43 2.90
8808 10693 6.374417 AGGTGTAATTCAATACAGAGGTGT 57.626 37.500 0.00 0.00 36.51 4.16
8809 10694 9.477484 GTATAGGTGTAATTCAATACAGAGGTG 57.523 37.037 0.00 0.00 36.51 4.00
8810 10695 8.648693 GGTATAGGTGTAATTCAATACAGAGGT 58.351 37.037 0.00 0.00 36.51 3.85
8811 10696 8.647796 TGGTATAGGTGTAATTCAATACAGAGG 58.352 37.037 0.00 0.00 36.51 3.69
8814 10699 8.774586 GCTTGGTATAGGTGTAATTCAATACAG 58.225 37.037 0.00 0.00 36.51 2.74
8815 10700 7.439955 CGCTTGGTATAGGTGTAATTCAATACA 59.560 37.037 0.00 0.00 33.52 2.29
8816 10701 7.570691 GCGCTTGGTATAGGTGTAATTCAATAC 60.571 40.741 0.00 0.00 0.00 1.89
8817 10702 6.425721 GCGCTTGGTATAGGTGTAATTCAATA 59.574 38.462 0.00 0.00 0.00 1.90
8818 10703 5.238650 GCGCTTGGTATAGGTGTAATTCAAT 59.761 40.000 0.00 0.00 0.00 2.57
8819 10704 4.573201 GCGCTTGGTATAGGTGTAATTCAA 59.427 41.667 0.00 0.00 0.00 2.69
8820 10705 4.124238 GCGCTTGGTATAGGTGTAATTCA 58.876 43.478 0.00 0.00 0.00 2.57
8821 10706 3.183775 CGCGCTTGGTATAGGTGTAATTC 59.816 47.826 5.56 0.00 0.00 2.17
8822 10707 3.128349 CGCGCTTGGTATAGGTGTAATT 58.872 45.455 5.56 0.00 0.00 1.40
8823 10708 2.750948 CGCGCTTGGTATAGGTGTAAT 58.249 47.619 5.56 0.00 0.00 1.89
8824 10709 1.803625 GCGCGCTTGGTATAGGTGTAA 60.804 52.381 26.67 0.00 0.00 2.41
8825 10710 0.249155 GCGCGCTTGGTATAGGTGTA 60.249 55.000 26.67 0.00 0.00 2.90
8826 10711 1.520787 GCGCGCTTGGTATAGGTGT 60.521 57.895 26.67 0.00 0.00 4.16
8827 10712 2.244651 GGCGCGCTTGGTATAGGTG 61.245 63.158 32.29 0.00 0.00 4.00
8828 10713 2.108362 GGCGCGCTTGGTATAGGT 59.892 61.111 32.29 0.00 0.00 3.08
8829 10714 1.812686 TAGGGCGCGCTTGGTATAGG 61.813 60.000 32.72 0.00 0.00 2.57
8830 10715 0.032952 TTAGGGCGCGCTTGGTATAG 59.967 55.000 32.72 0.00 0.00 1.31
8831 10716 0.032952 CTTAGGGCGCGCTTGGTATA 59.967 55.000 32.72 10.53 0.00 1.47
8832 10717 1.227556 CTTAGGGCGCGCTTGGTAT 60.228 57.895 32.72 9.72 0.00 2.73
8833 10718 2.185867 CTTAGGGCGCGCTTGGTA 59.814 61.111 32.72 11.79 0.00 3.25
8834 10719 4.778143 CCTTAGGGCGCGCTTGGT 62.778 66.667 32.72 15.18 0.00 3.67
8922 10807 0.395862 TCTCTCTCCCTAAGCACCGG 60.396 60.000 0.00 0.00 0.00 5.28
8927 10812 1.877443 CGCTACTCTCTCTCCCTAAGC 59.123 57.143 0.00 0.00 0.00 3.09
8977 10866 4.176271 TCTGTATGAAACACTCTGCATCG 58.824 43.478 0.00 0.00 33.45 3.84
9015 11265 3.576078 ATGCATCCCTATCCGTCAAAA 57.424 42.857 0.00 0.00 0.00 2.44
9016 11266 4.102524 ACTTATGCATCCCTATCCGTCAAA 59.897 41.667 0.19 0.00 0.00 2.69
9017 11267 3.646162 ACTTATGCATCCCTATCCGTCAA 59.354 43.478 0.19 0.00 0.00 3.18
9019 11269 3.963428 ACTTATGCATCCCTATCCGTC 57.037 47.619 0.19 0.00 0.00 4.79
9020 11270 3.391296 ACAACTTATGCATCCCTATCCGT 59.609 43.478 0.19 0.00 0.00 4.69
9021 11271 3.748048 CACAACTTATGCATCCCTATCCG 59.252 47.826 0.19 0.00 0.00 4.18
9022 11272 4.074970 CCACAACTTATGCATCCCTATCC 58.925 47.826 0.19 0.00 0.00 2.59
9023 11273 3.503748 GCCACAACTTATGCATCCCTATC 59.496 47.826 0.19 0.00 0.00 2.08
9024 11274 3.139025 AGCCACAACTTATGCATCCCTAT 59.861 43.478 0.19 0.00 0.00 2.57
9028 11278 2.754552 TGAAGCCACAACTTATGCATCC 59.245 45.455 0.19 0.00 0.00 3.51
9029 11279 4.168760 GTTGAAGCCACAACTTATGCATC 58.831 43.478 0.19 0.00 44.34 3.91
9032 11282 3.004734 ACTGTTGAAGCCACAACTTATGC 59.995 43.478 19.32 0.00 46.79 3.14
9033 11283 4.836125 ACTGTTGAAGCCACAACTTATG 57.164 40.909 19.32 11.81 46.79 1.90
9038 11288 4.105486 GAGAAAACTGTTGAAGCCACAAC 58.895 43.478 14.15 14.15 46.83 3.32
9040 11290 3.128589 GTGAGAAAACTGTTGAAGCCACA 59.871 43.478 0.00 0.00 0.00 4.17
9041 11291 3.128589 TGTGAGAAAACTGTTGAAGCCAC 59.871 43.478 0.00 0.74 0.00 5.01
9042 11292 3.351740 TGTGAGAAAACTGTTGAAGCCA 58.648 40.909 0.00 0.00 0.00 4.75
9045 11295 4.795278 GTGCTTGTGAGAAAACTGTTGAAG 59.205 41.667 0.00 0.00 0.00 3.02
9046 11296 4.380444 GGTGCTTGTGAGAAAACTGTTGAA 60.380 41.667 0.00 0.00 0.00 2.69
9047 11297 3.128589 GGTGCTTGTGAGAAAACTGTTGA 59.871 43.478 0.00 0.00 0.00 3.18
9072 11360 2.200373 AGTTTTGCTTCCGGTGCTAT 57.800 45.000 19.31 0.00 0.00 2.97
9155 11444 9.627123 TGCTAAAGTGAGTGCCTAAATAATAAT 57.373 29.630 0.00 0.00 0.00 1.28
9156 11445 8.889717 GTGCTAAAGTGAGTGCCTAAATAATAA 58.110 33.333 0.00 0.00 0.00 1.40
9157 11446 7.223971 CGTGCTAAAGTGAGTGCCTAAATAATA 59.776 37.037 0.00 0.00 0.00 0.98
9158 11447 6.037172 CGTGCTAAAGTGAGTGCCTAAATAAT 59.963 38.462 0.00 0.00 0.00 1.28
9162 11451 3.064207 CGTGCTAAAGTGAGTGCCTAAA 58.936 45.455 0.00 0.00 0.00 1.85
9195 11484 1.075374 AGCTCACCATTGTTTAGGCCA 59.925 47.619 5.01 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.