Multiple sequence alignment - TraesCS4B01G166700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G166700 chr4B 100.000 7950 0 0 1 7950 362139033 362146982 0.000000e+00 14681
1 TraesCS4B01G166700 chr4B 88.845 511 49 6 1 509 434588607 434589111 8.760000e-174 621
2 TraesCS4B01G166700 chr4B 82.143 392 57 13 468 850 25963346 25962959 2.770000e-84 324
3 TraesCS4B01G166700 chr4B 83.060 366 49 12 492 850 602681149 602680790 3.580000e-83 320
4 TraesCS4B01G166700 chr4B 86.770 257 26 7 4946 5196 498391507 498391761 6.080000e-71 279
5 TraesCS4B01G166700 chr4D 97.650 6341 107 10 851 7160 294342106 294348435 0.000000e+00 10846
6 TraesCS4B01G166700 chr4D 92.475 505 13 8 7449 7950 294349062 294349544 0.000000e+00 699
7 TraesCS4B01G166700 chr4D 87.072 263 26 7 4941 5196 402546414 402546675 2.810000e-74 291
8 TraesCS4B01G166700 chr4D 94.915 177 7 2 7156 7331 75782052 75782227 7.860000e-70 276
9 TraesCS4B01G166700 chr4D 92.982 114 8 0 7319 7432 294348432 294348545 4.930000e-37 167
10 TraesCS4B01G166700 chr4A 95.720 2874 98 5 1817 4669 215254257 215251388 0.000000e+00 4602
11 TraesCS4B01G166700 chr4A 95.278 2287 86 7 4883 7160 215251385 215249112 0.000000e+00 3605
12 TraesCS4B01G166700 chr4A 95.683 973 35 5 851 1819 215255305 215254336 0.000000e+00 1557
13 TraesCS4B01G166700 chr4A 93.396 636 27 7 7319 7950 215249115 215248491 0.000000e+00 928
14 TraesCS4B01G166700 chr4A 85.932 263 29 7 4941 5196 60035458 60035719 2.830000e-69 274
15 TraesCS4B01G166700 chr5B 84.668 874 94 25 1 850 102585150 102584293 0.000000e+00 835
16 TraesCS4B01G166700 chr5B 81.398 887 116 37 1 850 445551131 445550257 0.000000e+00 678
17 TraesCS4B01G166700 chr5B 89.084 513 47 8 1 509 344965290 344965797 5.240000e-176 628
18 TraesCS4B01G166700 chr1B 84.180 866 96 20 1 850 450495234 450496074 0.000000e+00 802
19 TraesCS4B01G166700 chr1B 83.941 878 96 20 3 850 670876585 670877447 0.000000e+00 798
20 TraesCS4B01G166700 chr1B 83.240 889 104 24 1 850 653978287 653977405 0.000000e+00 774
21 TraesCS4B01G166700 chr1B 96.512 172 6 0 7149 7320 500968071 500967900 1.310000e-72 285
22 TraesCS4B01G166700 chr2B 84.005 869 91 15 1 845 175894064 175894908 0.000000e+00 791
23 TraesCS4B01G166700 chr2B 83.503 885 104 20 1 850 15408545 15409422 0.000000e+00 787
24 TraesCS4B01G166700 chr2B 81.604 848 101 24 1 816 620823156 620822332 0.000000e+00 651
25 TraesCS4B01G166700 chr2B 98.225 169 3 0 7155 7323 777336930 777336762 6.030000e-76 296
26 TraesCS4B01G166700 chr2B 97.605 167 4 0 7154 7320 390802046 390801880 3.630000e-73 287
27 TraesCS4B01G166700 chr2B 92.771 83 6 0 7867 7949 95799173 95799091 3.900000e-23 121
28 TraesCS4B01G166700 chr7D 82.060 864 121 24 1 850 619996442 619995599 0.000000e+00 706
29 TraesCS4B01G166700 chr3B 81.093 878 113 38 1 850 678165905 678165053 0.000000e+00 652
30 TraesCS4B01G166700 chr3B 87.925 265 26 4 4936 5194 257098933 257099197 2.790000e-79 307
31 TraesCS4B01G166700 chr7B 89.432 511 50 4 1 509 2336644 2337152 6.730000e-180 641
32 TraesCS4B01G166700 chr7B 84.153 366 49 8 492 850 5210604 5210967 5.910000e-91 346
33 TraesCS4B01G166700 chr5D 80.090 889 111 35 1 850 208129029 208128168 1.140000e-167 601
34 TraesCS4B01G166700 chr5D 85.246 366 42 11 492 850 497877847 497877487 4.530000e-97 366
35 TraesCS4B01G166700 chr3D 88.302 265 25 4 4936 5194 178651803 178652067 5.990000e-81 313
36 TraesCS4B01G166700 chr3A 87.547 265 27 4 4936 5194 221274967 221275231 1.300000e-77 302
37 TraesCS4B01G166700 chr1D 96.471 170 6 0 7154 7323 360358221 360358390 1.690000e-71 281
38 TraesCS4B01G166700 chr1D 94.475 181 7 3 7150 7329 128526399 128526221 7.860000e-70 276
39 TraesCS4B01G166700 chr6D 95.455 176 6 2 7152 7325 392897145 392896970 6.080000e-71 279
40 TraesCS4B01G166700 chr6D 96.471 170 5 1 7155 7323 470958518 470958687 6.080000e-71 279
41 TraesCS4B01G166700 chr6D 85.240 271 32 6 4943 5208 123124112 123123845 1.020000e-68 272
42 TraesCS4B01G166700 chr6D 93.923 181 9 2 7149 7328 270689517 270689338 1.020000e-68 272
43 TraesCS4B01G166700 chr2D 95.181 83 4 0 7867 7949 61024796 61024714 1.800000e-26 132
44 TraesCS4B01G166700 chr2A 93.976 83 5 0 7867 7949 61491039 61490957 8.380000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G166700 chr4B 362139033 362146982 7949 False 14681 14681 100.00000 1 7950 1 chr4B.!!$F1 7949
1 TraesCS4B01G166700 chr4B 434588607 434589111 504 False 621 621 88.84500 1 509 1 chr4B.!!$F2 508
2 TraesCS4B01G166700 chr4D 294342106 294349544 7438 False 3904 10846 94.36900 851 7950 3 chr4D.!!$F3 7099
3 TraesCS4B01G166700 chr4A 215248491 215255305 6814 True 2673 4602 95.01925 851 7950 4 chr4A.!!$R1 7099
4 TraesCS4B01G166700 chr5B 102584293 102585150 857 True 835 835 84.66800 1 850 1 chr5B.!!$R1 849
5 TraesCS4B01G166700 chr5B 445550257 445551131 874 True 678 678 81.39800 1 850 1 chr5B.!!$R2 849
6 TraesCS4B01G166700 chr5B 344965290 344965797 507 False 628 628 89.08400 1 509 1 chr5B.!!$F1 508
7 TraesCS4B01G166700 chr1B 450495234 450496074 840 False 802 802 84.18000 1 850 1 chr1B.!!$F1 849
8 TraesCS4B01G166700 chr1B 670876585 670877447 862 False 798 798 83.94100 3 850 1 chr1B.!!$F2 847
9 TraesCS4B01G166700 chr1B 653977405 653978287 882 True 774 774 83.24000 1 850 1 chr1B.!!$R2 849
10 TraesCS4B01G166700 chr2B 175894064 175894908 844 False 791 791 84.00500 1 845 1 chr2B.!!$F2 844
11 TraesCS4B01G166700 chr2B 15408545 15409422 877 False 787 787 83.50300 1 850 1 chr2B.!!$F1 849
12 TraesCS4B01G166700 chr2B 620822332 620823156 824 True 651 651 81.60400 1 816 1 chr2B.!!$R3 815
13 TraesCS4B01G166700 chr7D 619995599 619996442 843 True 706 706 82.06000 1 850 1 chr7D.!!$R1 849
14 TraesCS4B01G166700 chr3B 678165053 678165905 852 True 652 652 81.09300 1 850 1 chr3B.!!$R1 849
15 TraesCS4B01G166700 chr7B 2336644 2337152 508 False 641 641 89.43200 1 509 1 chr7B.!!$F1 508
16 TraesCS4B01G166700 chr5D 208128168 208129029 861 True 601 601 80.09000 1 850 1 chr5D.!!$R1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 424 1.075659 GGGAGAGGGCTGCTTTTGT 59.924 57.895 0.0 0.00 32.36 2.83 F
1198 1315 1.081092 CACCTCTCCCTCCTCCCAA 59.919 63.158 0.0 0.00 0.00 4.12 F
1914 2112 0.519077 CGCCTGAAAGAGGAAAGTGC 59.481 55.000 0.0 0.00 46.33 4.40 F
2152 2350 1.123928 GATCCAGGGGACGAAGATGT 58.876 55.000 0.0 0.00 32.98 3.06 F
3431 3651 0.644331 CGTGCATTCTTCGAGCTCAG 59.356 55.000 15.4 4.49 0.00 3.35 F
3992 4212 0.538287 AGCAGGGAGAAAGTTGCACC 60.538 55.000 0.0 0.00 38.97 5.01 F
4705 4925 0.175073 ACGTGAATCCGAGGTAAGCC 59.825 55.000 0.0 0.00 0.00 4.35 F
6689 6912 0.249120 TGATGACGCCGTCCAAGATT 59.751 50.000 15.6 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1519 0.396417 AGGAGCTGATAGGCGAGTGT 60.396 55.000 0.00 0.00 37.29 3.55 R
2914 3133 2.025793 TGAAAGAGTTCCACACCAACCA 60.026 45.455 0.00 0.00 32.28 3.67 R
3411 3631 0.038251 TGAGCTCGAAGAATGCACGT 60.038 50.000 9.64 0.00 34.09 4.49 R
3677 3897 0.676466 TAAGCACCAACAGGATGCCG 60.676 55.000 0.00 0.00 42.53 5.69 R
4326 4546 1.798725 CTTCACAATTGGCTGCGCG 60.799 57.895 10.83 0.00 0.00 6.86 R
5245 5465 3.817647 GACTGAGAACAGCAAGTTTGGAT 59.182 43.478 0.00 0.00 46.95 3.41 R
6691 6914 2.423892 CTCTTCTCCGTCGGATTCAGAA 59.576 50.000 15.81 13.37 0.00 3.02 R
7579 8307 0.392706 TCAGATGTTGCCGAGTGTGT 59.607 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.487452 GCGGCGCTCGAAATACATCA 61.487 55.000 26.86 0.00 42.43 3.07
128 129 1.080025 GCGTACCTTGGCTCGTTCT 60.080 57.895 6.12 0.00 0.00 3.01
255 258 3.422303 GGCACGCGCATGTCTGAA 61.422 61.111 5.73 0.00 41.24 3.02
402 424 1.075659 GGGAGAGGGCTGCTTTTGT 59.924 57.895 0.00 0.00 32.36 2.83
779 881 2.261671 GGGCTTCTGAGACGCGAA 59.738 61.111 15.93 0.00 0.00 4.70
872 985 1.667724 GGTGCAGGATCATTTCTCACG 59.332 52.381 0.00 0.00 0.00 4.35
875 988 2.013563 GCAGGATCATTTCTCACGGCA 61.014 52.381 0.00 0.00 0.00 5.69
892 1005 2.515057 ACGCAGACCCACGCAAAA 60.515 55.556 0.00 0.00 0.00 2.44
935 1052 2.737376 ACGGAAGGCGAGCGAAAC 60.737 61.111 0.00 0.00 0.00 2.78
1198 1315 1.081092 CACCTCTCCCTCCTCCCAA 59.919 63.158 0.00 0.00 0.00 4.12
1338 1455 1.141019 CGTGTCATTCCGATCCCGT 59.859 57.895 0.00 0.00 0.00 5.28
1402 1519 1.306997 GATGTCCAGGACCTCCCCA 60.307 63.158 17.59 0.00 36.42 4.96
1451 1568 4.278513 CAAACCGCTCCACCCCCA 62.279 66.667 0.00 0.00 0.00 4.96
1606 1723 0.770557 ACTGGCAAGGGAGGTGGTAA 60.771 55.000 0.00 0.00 0.00 2.85
1789 1906 6.919662 GCATTGTTGTCTAATTGGGATGTATG 59.080 38.462 0.00 0.00 0.00 2.39
1849 2047 6.684613 GCATCCATATTTGTTCTGATTGGCTT 60.685 38.462 0.00 0.00 0.00 4.35
1900 2098 2.046023 TGGTTGCCAGATCGCCTG 60.046 61.111 0.00 0.00 42.55 4.85
1914 2112 0.519077 CGCCTGAAAGAGGAAAGTGC 59.481 55.000 0.00 0.00 46.33 4.40
2152 2350 1.123928 GATCCAGGGGACGAAGATGT 58.876 55.000 0.00 0.00 32.98 3.06
2289 2487 3.433306 TTGTTGGGGAGTCAGTTATGG 57.567 47.619 0.00 0.00 0.00 2.74
2428 2646 3.321111 AGTTCTTCGGTAACAGAAGCTCA 59.679 43.478 8.17 0.00 42.79 4.26
2589 2808 6.860080 ACTATTTTGCCTTCATGAATGACAG 58.140 36.000 14.16 0.00 36.36 3.51
2695 2914 4.209703 CCATGCTTTTGCTGTTGTAAACTG 59.790 41.667 0.00 0.00 45.55 3.16
2846 3065 5.652518 ACAGAGAGCGAGTATAGGAAAAAC 58.347 41.667 0.00 0.00 0.00 2.43
2914 3133 3.935203 CAGCAACCTGAAATACATCGAGT 59.065 43.478 0.00 0.00 41.77 4.18
3023 3242 7.659390 CCACCTATTTGTTCTATCCTTCATCTC 59.341 40.741 0.00 0.00 0.00 2.75
3042 3262 7.770201 TCATCTCTAGCAATGCAGATATAGTC 58.230 38.462 8.35 0.00 0.00 2.59
3411 3631 3.599343 GATTGCCTACTGTCATGTGTCA 58.401 45.455 0.00 0.00 0.00 3.58
3431 3651 0.644331 CGTGCATTCTTCGAGCTCAG 59.356 55.000 15.40 4.49 0.00 3.35
3992 4212 0.538287 AGCAGGGAGAAAGTTGCACC 60.538 55.000 0.00 0.00 38.97 5.01
4132 4352 6.524101 TGTATGAGCTTGTAGTGATGTGTA 57.476 37.500 0.00 0.00 0.00 2.90
4142 4362 6.408107 TGTAGTGATGTGTACCAAACAGTA 57.592 37.500 0.00 0.00 39.29 2.74
4357 4577 3.719268 TTGTGAAGCTCATATGGTGGT 57.281 42.857 2.13 0.00 0.00 4.16
4395 4615 4.410099 AGCAAGAGAATGGTGGATTCAAA 58.590 39.130 0.00 0.00 42.80 2.69
4705 4925 0.175073 ACGTGAATCCGAGGTAAGCC 59.825 55.000 0.00 0.00 0.00 4.35
4739 4959 6.341316 TCTGAGTAGGAAAGCAACATATGAC 58.659 40.000 10.38 0.00 0.00 3.06
4744 4964 4.526970 AGGAAAGCAACATATGACGGATT 58.473 39.130 10.38 0.32 0.00 3.01
4758 4978 5.970317 TGACGGATTCTGTTTCTACTGTA 57.030 39.130 0.00 0.00 0.00 2.74
4795 5015 5.665459 ACTCTTATGATCAGTTGCACCTAC 58.335 41.667 0.09 0.00 0.00 3.18
4842 5062 0.450983 GATGCTTCTGCTTCTGCACC 59.549 55.000 0.00 0.00 45.31 5.01
4919 5139 3.888930 GCCTGCTTATGTTATTTAGGGCA 59.111 43.478 0.00 0.00 36.31 5.36
4951 5171 4.262938 GCCACAGTTTAGTTCTACTCCCTT 60.263 45.833 0.00 0.00 0.00 3.95
5687 5907 6.174049 ACAGAGTTGAAGAAGTTAATAGCCC 58.826 40.000 0.00 0.00 0.00 5.19
5892 6112 1.409802 CCAGCCAGCAGATGAAAGGAT 60.410 52.381 0.00 0.00 0.00 3.24
6281 6501 6.099701 TGGCACTCTATAAATACACTGTCCAT 59.900 38.462 0.00 0.00 0.00 3.41
6317 6537 6.205464 CCTGTGATCTCAGTTTAAAAGCTTCA 59.795 38.462 20.33 0.00 34.02 3.02
6689 6912 0.249120 TGATGACGCCGTCCAAGATT 59.751 50.000 15.60 0.00 0.00 2.40
6690 6913 1.478916 TGATGACGCCGTCCAAGATTA 59.521 47.619 15.60 0.00 0.00 1.75
6691 6914 2.102420 TGATGACGCCGTCCAAGATTAT 59.898 45.455 15.60 0.00 0.00 1.28
7007 7230 8.178964 GTCATACTCGTAGGAAATATAGAGCAG 58.821 40.741 0.00 0.00 0.00 4.24
7025 7248 6.121613 GAGCAGTACTCGTAGATACTGTTT 57.878 41.667 11.81 2.88 43.61 2.83
7026 7249 6.512342 AGCAGTACTCGTAGATACTGTTTT 57.488 37.500 11.81 0.00 43.61 2.43
7027 7250 6.323266 AGCAGTACTCGTAGATACTGTTTTG 58.677 40.000 11.81 0.00 43.61 2.44
7028 7251 6.150641 AGCAGTACTCGTAGATACTGTTTTGA 59.849 38.462 11.81 0.00 43.61 2.69
7035 7262 7.709613 ACTCGTAGATACTGTTTTGAACTGTTT 59.290 33.333 8.31 2.09 42.49 2.83
7042 7269 9.783256 GATACTGTTTTGAACTGTTTGTTAACT 57.217 29.630 7.22 0.00 42.49 2.24
7156 7383 5.163364 ACATTTCTTCTGGAGCGAGACATAT 60.163 40.000 0.00 0.00 0.00 1.78
7157 7384 6.040955 ACATTTCTTCTGGAGCGAGACATATA 59.959 38.462 0.00 0.00 0.00 0.86
7158 7385 5.440234 TTCTTCTGGAGCGAGACATATAC 57.560 43.478 0.00 0.00 0.00 1.47
7159 7386 4.720046 TCTTCTGGAGCGAGACATATACT 58.280 43.478 0.00 0.00 0.00 2.12
7160 7387 4.757657 TCTTCTGGAGCGAGACATATACTC 59.242 45.833 0.00 0.00 0.00 2.59
7161 7388 3.413327 TCTGGAGCGAGACATATACTCC 58.587 50.000 0.00 0.00 45.87 3.85
7162 7389 2.490115 CTGGAGCGAGACATATACTCCC 59.510 54.545 4.98 0.00 45.22 4.30
7163 7390 1.819903 GGAGCGAGACATATACTCCCC 59.180 57.143 0.00 0.00 40.91 4.81
7164 7391 1.819903 GAGCGAGACATATACTCCCCC 59.180 57.143 0.00 0.00 0.00 5.40
7183 7410 4.788679 CCCCCGTTCCTAAATATTTGTCT 58.211 43.478 11.05 0.00 0.00 3.41
7184 7411 5.198207 CCCCCGTTCCTAAATATTTGTCTT 58.802 41.667 11.05 0.00 0.00 3.01
7185 7412 5.655090 CCCCCGTTCCTAAATATTTGTCTTT 59.345 40.000 11.05 0.00 0.00 2.52
7186 7413 6.153851 CCCCCGTTCCTAAATATTTGTCTTTT 59.846 38.462 11.05 0.00 0.00 2.27
7187 7414 7.310175 CCCCCGTTCCTAAATATTTGTCTTTTT 60.310 37.037 11.05 0.00 0.00 1.94
7188 7415 8.741841 CCCCGTTCCTAAATATTTGTCTTTTTA 58.258 33.333 11.05 0.00 0.00 1.52
7189 7416 9.783256 CCCGTTCCTAAATATTTGTCTTTTTAG 57.217 33.333 11.05 0.00 33.47 1.85
7209 7436 9.974980 TTTTTAGAGATTTCAAATGGTTACCAC 57.025 29.630 6.10 0.00 35.80 4.16
7210 7437 8.698973 TTTAGAGATTTCAAATGGTTACCACA 57.301 30.769 6.10 0.00 35.80 4.17
7211 7438 8.877864 TTAGAGATTTCAAATGGTTACCACAT 57.122 30.769 6.10 0.00 35.80 3.21
7212 7439 9.967451 TTAGAGATTTCAAATGGTTACCACATA 57.033 29.630 6.10 0.00 35.80 2.29
7213 7440 8.281212 AGAGATTTCAAATGGTTACCACATAC 57.719 34.615 6.10 0.00 35.80 2.39
7214 7441 7.065803 AGAGATTTCAAATGGTTACCACATACG 59.934 37.037 6.10 0.00 35.80 3.06
7215 7442 5.630661 TTTCAAATGGTTACCACATACGG 57.369 39.130 6.10 0.00 35.80 4.02
7216 7443 4.554960 TCAAATGGTTACCACATACGGA 57.445 40.909 6.10 0.00 35.80 4.69
7217 7444 5.105567 TCAAATGGTTACCACATACGGAT 57.894 39.130 6.10 0.00 35.80 4.18
7218 7445 4.878971 TCAAATGGTTACCACATACGGATG 59.121 41.667 6.10 5.94 35.80 3.51
7220 7447 5.617528 AATGGTTACCACATACGGATGTA 57.382 39.130 14.23 0.00 44.82 2.29
7221 7448 5.818678 ATGGTTACCACATACGGATGTAT 57.181 39.130 14.23 7.46 44.82 2.29
7222 7449 6.921486 ATGGTTACCACATACGGATGTATA 57.079 37.500 14.23 6.38 44.82 1.47
7223 7450 6.921486 TGGTTACCACATACGGATGTATAT 57.079 37.500 14.23 4.37 44.82 0.86
7224 7451 8.598202 ATGGTTACCACATACGGATGTATATA 57.402 34.615 14.23 3.33 44.82 0.86
7225 7452 8.058667 TGGTTACCACATACGGATGTATATAG 57.941 38.462 14.23 0.00 44.82 1.31
7226 7453 7.889600 TGGTTACCACATACGGATGTATATAGA 59.110 37.037 14.23 0.00 44.82 1.98
7227 7454 8.186821 GGTTACCACATACGGATGTATATAGAC 58.813 40.741 14.23 7.65 44.82 2.59
7228 7455 8.733458 GTTACCACATACGGATGTATATAGACA 58.267 37.037 14.23 2.07 44.82 3.41
7229 7456 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
7231 7458 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
7261 7488 5.992217 AGTGTAGACTCACTCATTTTGTTCC 59.008 40.000 0.00 0.00 44.07 3.62
7262 7489 4.988540 TGTAGACTCACTCATTTTGTTCCG 59.011 41.667 0.00 0.00 0.00 4.30
7263 7490 4.073293 AGACTCACTCATTTTGTTCCGT 57.927 40.909 0.00 0.00 0.00 4.69
7264 7491 5.209818 AGACTCACTCATTTTGTTCCGTA 57.790 39.130 0.00 0.00 0.00 4.02
7265 7492 5.794894 AGACTCACTCATTTTGTTCCGTAT 58.205 37.500 0.00 0.00 0.00 3.06
7266 7493 5.639506 AGACTCACTCATTTTGTTCCGTATG 59.360 40.000 0.00 0.00 0.00 2.39
7267 7494 5.305585 ACTCACTCATTTTGTTCCGTATGT 58.694 37.500 0.00 0.00 0.00 2.29
7268 7495 6.460781 ACTCACTCATTTTGTTCCGTATGTA 58.539 36.000 0.00 0.00 0.00 2.29
7269 7496 6.590292 ACTCACTCATTTTGTTCCGTATGTAG 59.410 38.462 0.00 0.00 0.00 2.74
7270 7497 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
7271 7498 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
7272 7499 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
7273 7500 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
7274 7501 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
7275 7502 6.932400 TCATTTTGTTCCGTATGTAGTCACTT 59.068 34.615 0.00 0.00 0.00 3.16
7276 7503 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
7277 7504 4.859304 TGTTCCGTATGTAGTCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
7278 7505 5.204409 TGTTCCGTATGTAGTCACTTGTT 57.796 39.130 0.00 0.00 0.00 2.83
7279 7506 4.986034 TGTTCCGTATGTAGTCACTTGTTG 59.014 41.667 0.00 0.00 0.00 3.33
7280 7507 5.221283 TGTTCCGTATGTAGTCACTTGTTGA 60.221 40.000 0.00 0.00 0.00 3.18
7281 7508 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
7282 7509 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
7283 7510 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
7284 7511 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
7285 7512 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
7286 7513 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
7287 7514 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
7288 7515 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
7289 7516 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
7290 7517 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
7291 7518 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
7292 7519 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
7293 7520 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
7294 7521 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
7295 7522 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
7296 7523 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
7297 7524 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
7298 7525 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
7314 7541 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
7315 7542 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
7316 7543 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
7317 7544 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
7352 7579 7.112122 ACTATGTTGGCAATCTTTGATGACTA 58.888 34.615 1.92 0.00 0.00 2.59
7427 7654 5.869344 TCCTGTATTGAAACGACTTGAGATG 59.131 40.000 0.00 0.00 0.00 2.90
7508 8235 2.243810 CACCCTATCAGGAGGTAGCTC 58.756 57.143 13.67 13.67 37.67 4.09
7517 8244 4.579869 TCAGGAGGTAGCTCATGTTTTTC 58.420 43.478 29.35 9.01 36.62 2.29
7521 8248 6.655003 CAGGAGGTAGCTCATGTTTTTCTTTA 59.345 38.462 24.47 0.00 31.38 1.85
7522 8249 7.174946 CAGGAGGTAGCTCATGTTTTTCTTTAA 59.825 37.037 24.47 0.00 31.38 1.52
7523 8250 7.724061 AGGAGGTAGCTCATGTTTTTCTTTAAA 59.276 33.333 22.66 0.00 0.00 1.52
7524 8251 8.357402 GGAGGTAGCTCATGTTTTTCTTTAAAA 58.643 33.333 22.66 0.00 33.41 1.52
7525 8252 9.744468 GAGGTAGCTCATGTTTTTCTTTAAAAA 57.256 29.630 16.98 0.00 41.21 1.94
7526 8253 9.750125 AGGTAGCTCATGTTTTTCTTTAAAAAG 57.250 29.630 0.00 0.00 43.42 2.27
7561 8289 3.306225 GCTGATGTTTCTGATGGGCAAAA 60.306 43.478 0.00 0.00 0.00 2.44
7645 8373 2.190841 CCGGACCCAACACAACACC 61.191 63.158 0.00 0.00 0.00 4.16
7703 8432 4.773117 GTCGACTCCACCGCCGAC 62.773 72.222 8.70 0.00 43.28 4.79
7713 8442 1.407979 CCACCGCCGACCCTATATATC 59.592 57.143 0.00 0.00 0.00 1.63
7801 8533 0.031917 TAACATACCTCCCGGCCTGA 60.032 55.000 0.00 0.00 0.00 3.86
7807 8539 2.046892 CTCCCGGCCTGACTTGTG 60.047 66.667 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.677052 GAAGAGTAGATCGCCTCCGTT 59.323 52.381 10.07 1.50 35.54 4.44
79 80 2.866156 CGAAACGCTGTGGATGATGTAT 59.134 45.455 0.00 0.00 0.00 2.29
86 87 0.865769 GACAACGAAACGCTGTGGAT 59.134 50.000 5.00 0.00 36.30 3.41
128 129 0.547471 TCCCTGATGGAGGAACAGCA 60.547 55.000 0.00 0.00 46.33 4.41
254 257 3.387947 CCGAGTACCCGGTGCCTT 61.388 66.667 7.80 0.00 44.23 4.35
273 276 2.202570 GCGCGCCTTCTCTACGAA 60.203 61.111 23.24 0.00 0.00 3.85
338 341 1.671742 GAGAGGTTTCCAGGCGACA 59.328 57.895 0.00 0.00 0.00 4.35
402 424 1.541118 TTCCCCTGCATCCACCTCA 60.541 57.895 0.00 0.00 0.00 3.86
511 560 4.124351 CGGGCGGCGTAGTGAAGA 62.124 66.667 9.37 0.00 0.00 2.87
609 696 1.136984 GCTTCGTCGTCCTCATCGT 59.863 57.895 0.00 0.00 0.00 3.73
767 867 1.139734 GGCTCATTCGCGTCTCAGA 59.860 57.895 5.77 0.00 0.00 3.27
801 905 1.135286 GCTTCCAGGCGATTTCTTTGG 60.135 52.381 0.00 0.00 0.00 3.28
875 988 2.115911 TTTTTGCGTGGGTCTGCGT 61.116 52.632 0.00 0.00 0.00 5.24
906 1023 1.757699 GCCTTCCGTGATAGGAGAAGT 59.242 52.381 0.00 0.00 41.98 3.01
913 1030 1.658717 CGCTCGCCTTCCGTGATAG 60.659 63.158 0.00 0.00 38.35 2.08
915 1032 2.501223 TTTCGCTCGCCTTCCGTGAT 62.501 55.000 0.00 0.00 38.35 3.06
952 1069 4.295199 AGTTTGGGGGTTCGGGGC 62.295 66.667 0.00 0.00 0.00 5.80
953 1070 2.035155 GAGTTTGGGGGTTCGGGG 59.965 66.667 0.00 0.00 0.00 5.73
1104 1221 4.159108 AGAGCGGGTAGGAGGGGG 62.159 72.222 0.00 0.00 0.00 5.40
1198 1315 2.366570 GGAGAGGGAGAGCAGGGT 59.633 66.667 0.00 0.00 0.00 4.34
1338 1455 2.447408 TAGATAGGCAGTCGGGAACA 57.553 50.000 0.00 0.00 0.00 3.18
1402 1519 0.396417 AGGAGCTGATAGGCGAGTGT 60.396 55.000 0.00 0.00 37.29 3.55
1751 1868 1.811266 CAATGCCCTCACCTCGACG 60.811 63.158 0.00 0.00 0.00 5.12
1789 1906 5.276270 TCTCGGAACAAATATGTACGCTAC 58.724 41.667 0.00 0.00 39.40 3.58
1808 1925 9.809096 AATATGGATGCTAAATAGTACATCTCG 57.191 33.333 0.00 0.00 39.10 4.04
1849 2047 6.314400 GCCTATAAGACATTGGTTACGAAACA 59.686 38.462 0.00 0.00 37.34 2.83
1900 2098 1.443802 CCTCCGCACTTTCCTCTTTC 58.556 55.000 0.00 0.00 0.00 2.62
1914 2112 0.957395 AACACAATGAGCAGCCTCCG 60.957 55.000 0.00 0.00 37.29 4.63
2016 2214 3.370421 GGCCCAATTTACAATCCCAAAGG 60.370 47.826 0.00 0.00 0.00 3.11
2152 2350 2.500098 CTCATAACCCCTTCGTCTGGAA 59.500 50.000 0.00 0.00 0.00 3.53
2428 2646 3.313690 CGCAAGCTTTTAACGGGATTTT 58.686 40.909 0.00 0.00 0.00 1.82
2477 2696 4.821805 TCCAAGCAACCTGTAGAAAAAGAG 59.178 41.667 0.00 0.00 0.00 2.85
2589 2808 4.778534 TTTATCAGACCCGTCGATATCC 57.221 45.455 0.00 0.00 31.01 2.59
2667 2886 5.410355 ACAACAGCAAAAGCATGGAATAT 57.590 34.783 0.00 0.00 0.00 1.28
2683 2902 4.295141 TCATACCCCCAGTTTACAACAG 57.705 45.455 0.00 0.00 0.00 3.16
2695 2914 2.586425 CACCACAATCATCATACCCCC 58.414 52.381 0.00 0.00 0.00 5.40
2742 2961 2.505819 ACATGGCCTTCCTTACTACCAG 59.494 50.000 3.32 0.00 0.00 4.00
2846 3065 7.076842 TGAATCTTGAAAAGGATTAGCTTCG 57.923 36.000 0.00 0.00 46.24 3.79
2914 3133 2.025793 TGAAAGAGTTCCACACCAACCA 60.026 45.455 0.00 0.00 32.28 3.67
3023 3242 5.186603 TCAGGGACTATATCTGCATTGCTAG 59.813 44.000 10.49 5.36 36.02 3.42
3042 3262 2.315176 AGCAGAGTAGCTATGTCAGGG 58.685 52.381 0.00 0.00 44.50 4.45
3411 3631 0.038251 TGAGCTCGAAGAATGCACGT 60.038 50.000 9.64 0.00 34.09 4.49
3431 3651 5.106475 TGGTCGGTGACATTTACTATTTTGC 60.106 40.000 0.00 0.00 33.68 3.68
3677 3897 0.676466 TAAGCACCAACAGGATGCCG 60.676 55.000 0.00 0.00 42.53 5.69
3992 4212 3.265479 ACCTCTTGAATCCCCTCTTCTTG 59.735 47.826 0.00 0.00 0.00 3.02
4132 4352 2.949177 TCAGCATGGTACTGTTTGGT 57.051 45.000 0.00 0.00 36.50 3.67
4142 4362 7.670979 TGCCTTTATCATATTTATCAGCATGGT 59.329 33.333 0.00 0.00 36.16 3.55
4326 4546 1.798725 CTTCACAATTGGCTGCGCG 60.799 57.895 10.83 0.00 0.00 6.86
4357 4577 6.475504 TCTCTTGCTCTGAATCCAACATAAA 58.524 36.000 0.00 0.00 0.00 1.40
4395 4615 2.838637 TCCCTTGGGTTGTGTTCTTT 57.161 45.000 5.51 0.00 0.00 2.52
4705 4925 7.500992 TGCTTTCCTACTCAGATTACCATTAG 58.499 38.462 0.00 0.00 0.00 1.73
4739 4959 8.873215 ATGTAATACAGTAGAAACAGAATCCG 57.127 34.615 0.00 0.00 0.00 4.18
4777 4997 5.128663 TGCTAAGTAGGTGCAACTGATCATA 59.871 40.000 16.44 1.66 36.74 2.15
4795 5015 8.509690 ACTGTGCATTATGCTTATTATGCTAAG 58.490 33.333 18.44 13.07 45.31 2.18
4839 5059 8.859156 CAAATATTTCCAACTAAATGAACGGTG 58.141 33.333 0.00 0.00 31.63 4.94
4842 5062 8.372521 GTGCAAATATTTCCAACTAAATGAACG 58.627 33.333 0.00 0.00 31.63 3.95
4919 5139 3.886123 ACTAAACTGTGGCACAACTTCT 58.114 40.909 22.31 7.14 44.16 2.85
5245 5465 3.817647 GACTGAGAACAGCAAGTTTGGAT 59.182 43.478 0.00 0.00 46.95 3.41
5432 5652 7.768120 ACATGAACTTTAGTTTTTCCATTTGCA 59.232 29.630 0.00 0.00 38.56 4.08
5892 6112 3.831323 TCCTCCAGAAACATTCTTTGCA 58.169 40.909 0.00 0.00 38.11 4.08
5918 6138 8.354711 ACTACTGATGTTGATCTTGAGTAGAA 57.645 34.615 0.00 0.00 36.08 2.10
6281 6501 6.252532 CTGAGATCACAGGAGCCATAAGCA 62.253 50.000 11.93 0.00 37.85 3.91
6317 6537 7.696453 CACACAAGAAAGTAAACGAGAAAACAT 59.304 33.333 0.00 0.00 0.00 2.71
6371 6591 4.811557 CCTTTTAATCTTCGCGAGGATTCT 59.188 41.667 39.04 25.03 38.04 2.40
6689 6912 4.204799 TCTTCTCCGTCGGATTCAGAATA 58.795 43.478 15.81 4.81 0.00 1.75
6690 6913 3.024547 TCTTCTCCGTCGGATTCAGAAT 58.975 45.455 15.81 0.00 0.00 2.40
6691 6914 2.423892 CTCTTCTCCGTCGGATTCAGAA 59.576 50.000 15.81 13.37 0.00 3.02
6775 6998 3.481559 ACTTCCTCCTCTTCTCCATCA 57.518 47.619 0.00 0.00 0.00 3.07
7007 7230 7.806960 ACAGTTCAAAACAGTATCTACGAGTAC 59.193 37.037 0.00 0.00 28.61 2.73
7020 7243 8.293114 ACAAGTTAACAAACAGTTCAAAACAG 57.707 30.769 8.61 0.00 41.64 3.16
7022 7245 8.756864 TCAACAAGTTAACAAACAGTTCAAAAC 58.243 29.630 8.61 0.00 41.64 2.43
7025 7248 9.482627 AAATCAACAAGTTAACAAACAGTTCAA 57.517 25.926 8.61 0.00 41.64 2.69
7026 7249 9.482627 AAAATCAACAAGTTAACAAACAGTTCA 57.517 25.926 8.61 0.00 41.64 3.18
7161 7388 4.788679 AGACAAATATTTAGGAACGGGGG 58.211 43.478 0.00 0.00 0.00 5.40
7162 7389 6.769134 AAAGACAAATATTTAGGAACGGGG 57.231 37.500 0.00 0.00 0.00 5.73
7163 7390 9.783256 CTAAAAAGACAAATATTTAGGAACGGG 57.217 33.333 0.00 0.00 33.69 5.28
7183 7410 9.974980 GTGGTAACCATTTGAAATCTCTAAAAA 57.025 29.630 0.00 0.00 35.28 1.94
7184 7411 9.137459 TGTGGTAACCATTTGAAATCTCTAAAA 57.863 29.630 0.00 0.00 35.28 1.52
7185 7412 8.698973 TGTGGTAACCATTTGAAATCTCTAAA 57.301 30.769 0.00 0.00 35.28 1.85
7186 7413 8.877864 ATGTGGTAACCATTTGAAATCTCTAA 57.122 30.769 0.00 0.00 35.28 2.10
7187 7414 9.391006 GTATGTGGTAACCATTTGAAATCTCTA 57.609 33.333 0.00 0.00 35.28 2.43
7188 7415 7.065803 CGTATGTGGTAACCATTTGAAATCTCT 59.934 37.037 0.00 0.00 35.28 3.10
7189 7416 7.186804 CGTATGTGGTAACCATTTGAAATCTC 58.813 38.462 0.00 0.00 35.28 2.75
7190 7417 6.094881 CCGTATGTGGTAACCATTTGAAATCT 59.905 38.462 0.00 0.00 35.28 2.40
7191 7418 6.094325 TCCGTATGTGGTAACCATTTGAAATC 59.906 38.462 0.00 0.00 35.28 2.17
7192 7419 5.946972 TCCGTATGTGGTAACCATTTGAAAT 59.053 36.000 0.00 0.00 35.28 2.17
7193 7420 5.314529 TCCGTATGTGGTAACCATTTGAAA 58.685 37.500 0.00 0.00 35.28 2.69
7194 7421 4.907809 TCCGTATGTGGTAACCATTTGAA 58.092 39.130 0.00 0.00 35.28 2.69
7195 7422 4.554960 TCCGTATGTGGTAACCATTTGA 57.445 40.909 0.00 0.00 35.28 2.69
7196 7423 4.638421 ACATCCGTATGTGGTAACCATTTG 59.362 41.667 0.00 0.00 44.79 2.32
7197 7424 4.850680 ACATCCGTATGTGGTAACCATTT 58.149 39.130 0.00 0.00 44.79 2.32
7198 7425 4.497291 ACATCCGTATGTGGTAACCATT 57.503 40.909 0.00 0.00 44.79 3.16
7199 7426 5.818678 ATACATCCGTATGTGGTAACCAT 57.181 39.130 3.56 0.00 45.99 3.55
7200 7427 6.921486 ATATACATCCGTATGTGGTAACCA 57.079 37.500 3.56 0.00 45.99 3.67
7201 7428 8.186821 GTCTATATACATCCGTATGTGGTAACC 58.813 40.741 3.56 0.00 45.99 2.85
7202 7429 8.733458 TGTCTATATACATCCGTATGTGGTAAC 58.267 37.037 3.56 0.00 45.99 2.50
7203 7430 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
7205 7432 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
7238 7465 5.107453 CGGAACAAAATGAGTGAGTCTACAC 60.107 44.000 0.00 0.00 40.60 2.90
7239 7466 4.988540 CGGAACAAAATGAGTGAGTCTACA 59.011 41.667 0.00 0.00 0.00 2.74
7240 7467 4.989168 ACGGAACAAAATGAGTGAGTCTAC 59.011 41.667 0.00 0.00 0.00 2.59
7241 7468 5.209818 ACGGAACAAAATGAGTGAGTCTA 57.790 39.130 0.00 0.00 0.00 2.59
7242 7469 4.073293 ACGGAACAAAATGAGTGAGTCT 57.927 40.909 0.00 0.00 0.00 3.24
7243 7470 5.408604 ACATACGGAACAAAATGAGTGAGTC 59.591 40.000 0.00 0.00 0.00 3.36
7244 7471 5.305585 ACATACGGAACAAAATGAGTGAGT 58.694 37.500 0.00 0.00 0.00 3.41
7245 7472 5.862924 ACATACGGAACAAAATGAGTGAG 57.137 39.130 0.00 0.00 0.00 3.51
7246 7473 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
7247 7474 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
7248 7475 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
7249 7476 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
7250 7477 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
7251 7478 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
7252 7479 6.708949 ACAAGTGACTACATACGGAACAAAAT 59.291 34.615 0.00 0.00 0.00 1.82
7253 7480 6.050432 ACAAGTGACTACATACGGAACAAAA 58.950 36.000 0.00 0.00 0.00 2.44
7254 7481 5.603596 ACAAGTGACTACATACGGAACAAA 58.396 37.500 0.00 0.00 0.00 2.83
7255 7482 5.204409 ACAAGTGACTACATACGGAACAA 57.796 39.130 0.00 0.00 0.00 2.83
7256 7483 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
7257 7484 5.224888 TCAACAAGTGACTACATACGGAAC 58.775 41.667 0.00 0.00 0.00 3.62
7258 7485 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
7259 7486 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
7260 7487 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
7261 7488 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
7262 7489 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
7264 7491 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
7265 7492 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
7266 7493 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
7267 7494 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
7268 7495 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
7269 7496 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
7270 7497 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
7271 7498 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
7272 7499 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
7288 7515 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
7289 7516 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
7290 7517 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
7291 7518 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
7292 7519 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
7293 7520 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
7294 7521 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
7295 7522 7.985752 AGTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
7296 7523 8.087303 AGTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
7297 7524 7.672122 AGTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
7298 7525 8.003629 AGTAGTACTCCCTCCGTTTCTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
7299 7526 7.284034 CAGTAGTACTCCCTCCGTTTCTAAATA 59.716 40.741 0.00 0.00 0.00 1.40
7300 7527 6.096564 CAGTAGTACTCCCTCCGTTTCTAAAT 59.903 42.308 0.00 0.00 0.00 1.40
7301 7528 5.416952 CAGTAGTACTCCCTCCGTTTCTAAA 59.583 44.000 0.00 0.00 0.00 1.85
7302 7529 4.946157 CAGTAGTACTCCCTCCGTTTCTAA 59.054 45.833 0.00 0.00 0.00 2.10
7303 7530 4.018960 ACAGTAGTACTCCCTCCGTTTCTA 60.019 45.833 0.00 0.00 0.00 2.10
7304 7531 3.245193 ACAGTAGTACTCCCTCCGTTTCT 60.245 47.826 0.00 0.00 0.00 2.52
7305 7532 3.087781 ACAGTAGTACTCCCTCCGTTTC 58.912 50.000 0.00 0.00 0.00 2.78
7306 7533 3.166560 ACAGTAGTACTCCCTCCGTTT 57.833 47.619 0.00 0.00 0.00 3.60
7307 7534 2.895242 ACAGTAGTACTCCCTCCGTT 57.105 50.000 0.00 0.00 0.00 4.44
7308 7535 3.274095 GTACAGTAGTACTCCCTCCGT 57.726 52.381 0.00 0.00 45.66 4.69
7352 7579 7.746703 ACAGTAAGACAGGAAGGACTAAATTT 58.253 34.615 0.00 0.00 0.00 1.82
7427 7654 0.532196 GCCCCGTCTACAGCCAATAC 60.532 60.000 0.00 0.00 0.00 1.89
7517 8244 5.236263 AGCAACCGCCATTTTCTTTTTAAAG 59.764 36.000 0.00 0.00 39.83 1.85
7521 8248 2.871633 CAGCAACCGCCATTTTCTTTTT 59.128 40.909 0.00 0.00 39.83 1.94
7522 8249 2.102252 TCAGCAACCGCCATTTTCTTTT 59.898 40.909 0.00 0.00 39.83 2.27
7523 8250 1.686052 TCAGCAACCGCCATTTTCTTT 59.314 42.857 0.00 0.00 39.83 2.52
7524 8251 1.327303 TCAGCAACCGCCATTTTCTT 58.673 45.000 0.00 0.00 39.83 2.52
7525 8252 1.203052 CATCAGCAACCGCCATTTTCT 59.797 47.619 0.00 0.00 39.83 2.52
7526 8253 1.067635 ACATCAGCAACCGCCATTTTC 60.068 47.619 0.00 0.00 39.83 2.29
7538 8266 1.272037 TGCCCATCAGAAACATCAGCA 60.272 47.619 0.00 0.00 0.00 4.41
7579 8307 0.392706 TCAGATGTTGCCGAGTGTGT 59.607 50.000 0.00 0.00 0.00 3.72
7703 8432 5.361285 CCGAAAGAGTGAGGGATATATAGGG 59.639 48.000 0.00 0.00 0.00 3.53
7713 8442 1.153745 CGAGCCGAAAGAGTGAGGG 60.154 63.158 0.00 0.00 0.00 4.30
7801 8533 2.497675 ACATAGATCAGCGTCCACAAGT 59.502 45.455 0.00 0.00 0.00 3.16
7807 8539 2.034305 ACGGTTACATAGATCAGCGTCC 59.966 50.000 0.00 0.00 38.97 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.