Multiple sequence alignment - TraesCS4B01G164500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G164500 chr4B 100.000 9037 0 0 1 9037 342859373 342850337 0.000000e+00 16689.0
1 TraesCS4B01G164500 chr4B 85.629 167 22 2 570 735 653967914 653967749 3.350000e-39 174.0
2 TraesCS4B01G164500 chr4B 98.611 72 1 0 911 982 342858390 342858319 2.650000e-25 128.0
3 TraesCS4B01G164500 chr4B 98.611 72 1 0 984 1055 342858463 342858392 2.650000e-25 128.0
4 TraesCS4B01G164500 chr4B 83.704 135 18 4 8865 8995 367873495 367873629 3.430000e-24 124.0
5 TraesCS4B01G164500 chr4D 94.052 4556 118 30 3691 8154 158894776 158890282 0.000000e+00 6770.0
6 TraesCS4B01G164500 chr4D 97.078 1403 39 2 2298 3699 158901897 158900496 0.000000e+00 2362.0
7 TraesCS4B01G164500 chr4D 96.124 1161 23 2 1076 2216 158903054 158901896 0.000000e+00 1875.0
8 TraesCS4B01G164500 chr4D 88.666 997 89 15 1 982 158904089 158903102 0.000000e+00 1194.0
9 TraesCS4B01G164500 chr4D 93.885 278 4 3 8149 8426 158890251 158889987 3.040000e-109 407.0
10 TraesCS4B01G164500 chr4D 90.769 130 8 2 8879 9007 158889898 158889772 4.340000e-38 171.0
11 TraesCS4B01G164500 chr4D 95.876 97 2 2 2212 2306 489441044 489440948 1.210000e-33 156.0
12 TraesCS4B01G164500 chr4D 87.050 139 15 3 8875 9010 374829288 374829150 4.370000e-33 154.0
13 TraesCS4B01G164500 chr4D 85.075 134 17 3 8877 9007 468406216 468406083 5.690000e-27 134.0
14 TraesCS4B01G164500 chr4D 92.473 93 2 1 984 1076 158903168 158903081 2.650000e-25 128.0
15 TraesCS4B01G164500 chr4D 97.059 34 1 0 907 940 151981593 151981626 3.520000e-04 58.4
16 TraesCS4B01G164500 chr4D 100.000 30 0 0 984 1013 151981597 151981626 1.000000e-03 56.5
17 TraesCS4B01G164500 chr4A 96.501 1715 47 6 3819 5528 281691426 281693132 0.000000e+00 2822.0
18 TraesCS4B01G164500 chr4A 92.719 1703 78 23 6442 8102 281696183 281697881 0.000000e+00 2416.0
19 TraesCS4B01G164500 chr4A 95.087 1201 42 4 1023 2216 281682270 281683460 0.000000e+00 1875.0
20 TraesCS4B01G164500 chr4A 95.882 850 31 2 2298 3143 281683459 281684308 0.000000e+00 1373.0
21 TraesCS4B01G164500 chr4A 90.184 978 44 9 5528 6456 281694247 281695221 0.000000e+00 1227.0
22 TraesCS4B01G164500 chr4A 92.941 425 17 7 3138 3549 281689936 281690360 2.790000e-169 606.0
23 TraesCS4B01G164500 chr4A 86.643 554 47 8 8149 8701 281697992 281698519 1.010000e-163 588.0
24 TraesCS4B01G164500 chr4A 96.154 260 10 0 3559 3818 281691207 281691466 8.390000e-115 425.0
25 TraesCS4B01G164500 chr4A 85.714 112 15 1 235 346 102449972 102449862 5.730000e-22 117.0
26 TraesCS4B01G164500 chr3B 76.321 549 104 18 8215 8743 554995602 554995060 4.160000e-68 270.0
27 TraesCS4B01G164500 chr3B 96.875 96 2 1 2213 2308 138269217 138269311 9.390000e-35 159.0
28 TraesCS4B01G164500 chr3B 83.436 163 22 5 566 724 578758293 578758454 7.310000e-31 147.0
29 TraesCS4B01G164500 chr2D 76.181 487 88 20 8274 8740 405601662 405602140 1.960000e-56 231.0
30 TraesCS4B01G164500 chr2D 95.918 98 3 1 2215 2312 184661139 184661235 3.380000e-34 158.0
31 TraesCS4B01G164500 chr2D 74.101 417 77 21 8334 8729 45948958 45948552 9.460000e-30 143.0
32 TraesCS4B01G164500 chr2D 73.798 416 80 19 8334 8729 46012714 46012308 4.400000e-28 137.0
33 TraesCS4B01G164500 chr2D 73.621 417 79 20 8334 8729 45927438 45927032 2.050000e-26 132.0
34 TraesCS4B01G164500 chr2D 84.091 132 17 4 8868 8995 405603588 405603719 3.430000e-24 124.0
35 TraesCS4B01G164500 chr2D 85.000 100 13 2 6002 6100 106648199 106648297 5.770000e-17 100.0
36 TraesCS4B01G164500 chr2D 83.951 81 13 0 6696 6776 473853036 473852956 2.710000e-10 78.7
37 TraesCS4B01G164500 chr2D 85.484 62 7 2 8790 8850 343561092 343561152 7.570000e-06 63.9
38 TraesCS4B01G164500 chr1B 79.701 335 47 12 8288 8614 465387385 465387064 1.180000e-53 222.0
39 TraesCS4B01G164500 chr1B 74.731 186 38 9 6003 6182 469980944 469980762 3.500000e-09 75.0
40 TraesCS4B01G164500 chr7D 75.306 490 81 27 8264 8726 464214907 464214431 1.990000e-46 198.0
41 TraesCS4B01G164500 chr7D 85.185 135 15 5 8877 9007 235823385 235823518 5.690000e-27 134.0
42 TraesCS4B01G164500 chr7D 83.453 139 20 3 8875 9010 611646643 611646505 9.530000e-25 126.0
43 TraesCS4B01G164500 chr7D 81.818 88 13 3 5994 6079 190087546 190087460 4.530000e-08 71.3
44 TraesCS4B01G164500 chr6A 73.975 488 102 19 8273 8740 49124883 49125365 3.350000e-39 174.0
45 TraesCS4B01G164500 chr6A 84.049 163 21 4 561 719 14658038 14658199 1.570000e-32 152.0
46 TraesCS4B01G164500 chr6A 82.317 164 25 4 560 721 393520483 393520644 1.220000e-28 139.0
47 TraesCS4B01G164500 chr6A 84.848 132 16 3 729 858 612133981 612134110 7.360000e-26 130.0
48 TraesCS4B01G164500 chr6A 83.544 79 7 3 8759 8832 479089171 479089094 1.630000e-07 69.4
49 TraesCS4B01G164500 chr6A 89.796 49 1 1 910 954 612134184 612134232 9.800000e-05 60.2
50 TraesCS4B01G164500 chr6A 89.583 48 1 1 984 1027 612134185 612134232 3.520000e-04 58.4
51 TraesCS4B01G164500 chr5B 96.000 100 3 1 2213 2312 547451173 547451075 2.610000e-35 161.0
52 TraesCS4B01G164500 chr7B 95.960 99 3 1 2203 2300 157681664 157681762 9.390000e-35 159.0
53 TraesCS4B01G164500 chr7B 81.013 158 20 4 729 877 583975932 583975776 5.730000e-22 117.0
54 TraesCS4B01G164500 chr7B 75.743 202 38 9 6002 6195 328166363 328166561 3.470000e-14 91.6
55 TraesCS4B01G164500 chr7B 75.248 202 39 11 6000 6193 614218885 614218687 1.620000e-12 86.1
56 TraesCS4B01G164500 chr2B 95.098 102 4 1 2213 2314 245933609 245933509 9.390000e-35 159.0
57 TraesCS4B01G164500 chr2B 95.833 96 4 0 2215 2310 709839411 709839316 1.210000e-33 156.0
58 TraesCS4B01G164500 chr5A 85.161 155 20 3 567 719 18693631 18693784 1.210000e-33 156.0
59 TraesCS4B01G164500 chr1D 89.516 124 10 3 2188 2310 243753409 243753288 4.370000e-33 154.0
60 TraesCS4B01G164500 chr1D 77.315 216 45 4 8483 8697 42626076 42626288 3.430000e-24 124.0
61 TraesCS4B01G164500 chr1D 80.612 98 17 2 5995 6091 474436532 474436436 3.500000e-09 75.0
62 TraesCS4B01G164500 chr2A 97.727 88 2 0 2212 2299 81757224 81757311 1.570000e-32 152.0
63 TraesCS4B01G164500 chr2A 83.226 155 14 8 729 872 724364944 724364791 2.050000e-26 132.0
64 TraesCS4B01G164500 chr1A 82.456 171 26 4 567 735 310970599 310970767 7.310000e-31 147.0
65 TraesCS4B01G164500 chr1A 83.784 148 19 5 8868 9011 61572878 61572732 1.580000e-27 135.0
66 TraesCS4B01G164500 chr1A 80.420 143 18 7 587 726 566633817 566633682 5.770000e-17 100.0
67 TraesCS4B01G164500 chr6D 79.147 211 40 4 8489 8696 163143027 163143236 9.460000e-30 143.0
68 TraesCS4B01G164500 chr6D 87.952 83 8 2 5998 6079 452308681 452308600 7.470000e-16 97.1
69 TraesCS4B01G164500 chr6D 87.719 57 6 1 6704 6760 212426672 212426617 2.110000e-06 65.8
70 TraesCS4B01G164500 chr6B 84.783 138 19 2 8875 9010 704670081 704669944 4.400000e-28 137.0
71 TraesCS4B01G164500 chr6B 72.764 246 46 12 6697 6928 153527721 153527483 7.570000e-06 63.9
72 TraesCS4B01G164500 chr3D 72.636 497 102 23 8273 8743 135043004 135042516 5.690000e-27 134.0
73 TraesCS4B01G164500 chr3D 90.541 74 5 2 738 809 564925502 564925429 7.470000e-16 97.1
74 TraesCS4B01G164500 chr5D 92.391 92 6 1 567 657 470465462 470465371 7.360000e-26 130.0
75 TraesCS4B01G164500 chr5D 87.879 66 6 2 6696 6760 322506019 322506083 9.730000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G164500 chr4B 342850337 342859373 9036 True 5648.333333 16689 99.074000 1 9037 3 chr4B.!!$R2 9036
1 TraesCS4B01G164500 chr4D 158889772 158894776 5004 True 2449.333333 6770 92.902000 3691 9007 3 chr4D.!!$R4 5316
2 TraesCS4B01G164500 chr4D 158900496 158904089 3593 True 1389.750000 2362 93.585250 1 3699 4 chr4D.!!$R5 3698
3 TraesCS4B01G164500 chr4A 281682270 281684308 2038 False 1624.000000 1875 95.484500 1023 3143 2 chr4A.!!$F1 2120
4 TraesCS4B01G164500 chr4A 281689936 281698519 8583 False 1347.333333 2822 92.523667 3138 8701 6 chr4A.!!$F2 5563
5 TraesCS4B01G164500 chr3B 554995060 554995602 542 True 270.000000 270 76.321000 8215 8743 1 chr3B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 586 0.032952 TATAGCTGGCTAAACGGGCG 59.967 55.0 6.39 0.0 31.73 6.13 F
655 656 0.598158 GACACGACACGGGCTAAACA 60.598 55.0 0.00 0.0 31.12 2.83 F
735 736 0.753262 GGCCGACATGACTATGACCT 59.247 55.0 0.00 0.0 37.73 3.85 F
2228 2296 0.978907 TGTTTTACTCCCTCCGTCCC 59.021 55.0 0.00 0.0 0.00 4.46 F
3584 4506 0.823356 GCCAGCTCAGGGAAACACAA 60.823 55.0 0.00 0.0 0.00 3.33 F
4143 5107 0.595095 CTGCCAGTTCCTTTCAGTGC 59.405 55.0 0.00 0.0 0.00 4.40 F
6030 8164 0.328258 CAATCGGACCCCTCAAACCT 59.672 55.0 0.00 0.0 0.00 3.50 F
6102 8237 0.399519 CCCAACCGTATCCCCTACCT 60.400 60.0 0.00 0.0 0.00 3.08 F
6396 8534 0.402121 GCTTCCCTCTCCCTTTGTGT 59.598 55.0 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2351 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.0 0.00 4.37 R
2284 2352 1.790818 AAATCTACTCCCTCCGTCCC 58.209 55.000 0.00 0.0 0.00 4.46 R
2285 2353 3.908643 AAAAATCTACTCCCTCCGTCC 57.091 47.619 0.00 0.0 0.00 4.79 R
3843 4806 0.263765 AGCTCCGGGGGTTATACTCA 59.736 55.000 0.00 0.0 0.00 3.41 R
5274 6248 3.949113 GGTGTTCCTAACCAAACAACTCA 59.051 43.478 0.00 0.0 39.46 3.41 R
6091 8226 0.046552 TTTGGGCCAGGTAGGGGATA 59.953 55.000 6.23 0.0 38.09 2.59 R
7037 10194 1.447314 GTGAGCCCCTAAACGTCCG 60.447 63.158 0.00 0.0 0.00 4.79 R
7369 10526 1.797635 GTCTCAGCAGCAGTGTCTTTC 59.202 52.381 0.00 0.0 0.00 2.62 R
8255 11523 1.886886 AAAGGCGAAAGTTTAGGCGA 58.113 45.000 14.92 0.0 35.47 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.030529 GTGAATTGCGTTTCGGATCATTTG 59.969 41.667 0.00 0.00 0.00 2.32
104 105 9.321590 GTTAAAAATCATGATTTTGCAAAGCTC 57.678 29.630 35.41 20.45 46.76 4.09
105 106 5.773239 AAATCATGATTTTGCAAAGCTCG 57.227 34.783 24.83 2.03 37.74 5.03
140 141 2.668212 CCGAGGTCTTTGGCGCAA 60.668 61.111 10.83 0.00 0.00 4.85
143 144 0.240945 CGAGGTCTTTGGCGCAAAAT 59.759 50.000 11.07 0.00 32.75 1.82
149 150 3.354397 GTCTTTGGCGCAAAATAGATCG 58.646 45.455 11.07 0.00 32.75 3.69
151 152 2.823196 TTGGCGCAAAATAGATCGTG 57.177 45.000 10.83 0.00 0.00 4.35
155 156 3.685272 TGGCGCAAAATAGATCGTGTAAA 59.315 39.130 10.83 0.00 0.00 2.01
164 165 1.203994 AGATCGTGTAAACTCACCCCG 59.796 52.381 0.00 0.00 35.18 5.73
174 175 3.552132 AACTCACCCCGCAAAATTTTT 57.448 38.095 0.00 0.00 0.00 1.94
175 176 4.674281 AACTCACCCCGCAAAATTTTTA 57.326 36.364 0.00 0.00 0.00 1.52
176 177 4.882842 ACTCACCCCGCAAAATTTTTAT 57.117 36.364 0.00 0.00 0.00 1.40
178 179 6.347859 ACTCACCCCGCAAAATTTTTATAA 57.652 33.333 0.00 0.00 0.00 0.98
179 180 6.394809 ACTCACCCCGCAAAATTTTTATAAG 58.605 36.000 0.00 0.00 0.00 1.73
184 185 5.415221 CCCGCAAAATTTTTATAAGCCTCA 58.585 37.500 0.00 0.00 0.00 3.86
187 188 6.413269 CGCAAAATTTTTATAAGCCTCATGC 58.587 36.000 0.00 0.00 41.71 4.06
193 194 5.888691 TTTTATAAGCCTCATGCAAACGA 57.111 34.783 0.00 0.00 44.83 3.85
201 202 3.859386 GCCTCATGCAAACGAATTTTAGG 59.141 43.478 0.00 0.00 40.77 2.69
215 216 6.209788 ACGAATTTTAGGGGATGCAACTTTAA 59.790 34.615 0.00 0.00 0.00 1.52
221 222 3.201266 AGGGGATGCAACTTTAACGGATA 59.799 43.478 0.00 0.00 0.00 2.59
224 225 4.537015 GGATGCAACTTTAACGGATATGC 58.463 43.478 0.00 0.00 0.00 3.14
233 234 1.700955 AACGGATATGCTAGGACGGT 58.299 50.000 0.00 0.00 0.00 4.83
260 261 1.187567 GGCTGCATCAAACCCAACCT 61.188 55.000 0.50 0.00 0.00 3.50
262 263 1.619654 CTGCATCAAACCCAACCTGA 58.380 50.000 0.00 0.00 0.00 3.86
266 267 2.162681 CATCAAACCCAACCTGACTCC 58.837 52.381 0.00 0.00 0.00 3.85
271 272 2.571216 CCCAACCTGACTCCGACGT 61.571 63.158 0.00 0.00 0.00 4.34
308 309 1.234615 TTTGGTTGCCTAGCTCGCAC 61.235 55.000 7.86 4.38 35.56 5.34
309 310 2.047274 GGTTGCCTAGCTCGCACA 60.047 61.111 7.86 0.00 35.56 4.57
317 318 2.482142 GCCTAGCTCGCACATAGAAACT 60.482 50.000 0.00 0.00 0.00 2.66
384 385 6.402226 GGAACGCTTAGATCAATCGTTTTTCT 60.402 38.462 15.45 0.82 45.96 2.52
386 387 7.223058 ACGCTTAGATCAATCGTTTTTCTAG 57.777 36.000 0.00 0.00 35.56 2.43
405 406 7.962995 TTCTAGATATAGATTGGGCCTACTG 57.037 40.000 4.53 0.00 0.00 2.74
407 408 8.171337 TCTAGATATAGATTGGGCCTACTGTA 57.829 38.462 4.53 4.74 0.00 2.74
418 419 6.818281 TGGGCCTACTGTAATTTACACTAT 57.182 37.500 4.53 0.00 34.46 2.12
421 422 6.053005 GGCCTACTGTAATTTACACTATGCA 58.947 40.000 16.98 0.00 34.46 3.96
427 428 7.796054 ACTGTAATTTACACTATGCAGAGGAT 58.204 34.615 13.85 2.47 34.46 3.24
443 444 5.693814 CAGAGGATGCAAACTAAACTTGAC 58.306 41.667 0.00 0.00 0.00 3.18
445 446 4.134563 AGGATGCAAACTAAACTTGACGT 58.865 39.130 0.00 0.00 0.00 4.34
542 543 2.358039 TCGTGGGGTTTCGACATCT 58.642 52.632 0.00 0.00 0.00 2.90
545 546 1.165270 GTGGGGTTTCGACATCTTGG 58.835 55.000 0.00 0.00 0.00 3.61
552 553 3.306502 GGTTTCGACATCTTGGTCACCTA 60.307 47.826 0.00 0.00 37.66 3.08
571 572 4.523558 ACCTATCTTTCTCCACCGTATAGC 59.476 45.833 0.00 0.00 0.00 2.97
576 577 0.106167 TCTCCACCGTATAGCTGGCT 60.106 55.000 0.00 0.00 0.00 4.75
585 586 0.032952 TATAGCTGGCTAAACGGGCG 59.967 55.000 6.39 0.00 31.73 6.13
607 608 2.036098 CAATCAGGCCAGCCCACA 59.964 61.111 5.01 0.00 36.58 4.17
644 645 2.347114 CCATGGGCAGACACGACA 59.653 61.111 2.85 0.00 0.00 4.35
645 646 2.034879 CCATGGGCAGACACGACAC 61.035 63.158 2.85 0.00 0.00 3.67
646 647 2.048222 ATGGGCAGACACGACACG 60.048 61.111 0.00 0.00 0.00 4.49
655 656 0.598158 GACACGACACGGGCTAAACA 60.598 55.000 0.00 0.00 31.12 2.83
659 660 1.278238 CGACACGGGCTAAACAGATC 58.722 55.000 0.00 0.00 0.00 2.75
667 668 1.227556 CTAAACAGATCGGGCCCGG 60.228 63.158 42.36 28.70 40.25 5.73
695 696 2.672996 GCCATGGGTCGTGCTTGT 60.673 61.111 15.13 0.00 0.00 3.16
729 730 4.201679 CGCGGGCCGACATGACTA 62.202 66.667 33.44 0.00 40.02 2.59
730 731 2.421739 GCGGGCCGACATGACTAT 59.578 61.111 33.44 0.00 0.00 2.12
731 732 1.956170 GCGGGCCGACATGACTATG 60.956 63.158 33.44 0.00 40.24 2.23
732 733 1.739667 CGGGCCGACATGACTATGA 59.260 57.895 24.41 0.00 37.73 2.15
735 736 0.753262 GGCCGACATGACTATGACCT 59.247 55.000 0.00 0.00 37.73 3.85
737 738 2.364324 GGCCGACATGACTATGACCTAA 59.636 50.000 0.00 0.00 37.73 2.69
738 739 3.006967 GGCCGACATGACTATGACCTAAT 59.993 47.826 0.00 0.00 37.73 1.73
739 740 4.219944 GGCCGACATGACTATGACCTAATA 59.780 45.833 0.00 0.00 37.73 0.98
740 741 5.162075 GCCGACATGACTATGACCTAATAC 58.838 45.833 0.00 0.00 37.73 1.89
748 753 8.898761 CATGACTATGACCTAATACTAGCCTAG 58.101 40.741 0.00 0.00 36.36 3.02
790 796 2.875296 AGTCAAATAGGCCAAACAGCA 58.125 42.857 5.01 0.00 0.00 4.41
796 802 2.424842 TAGGCCAAACAGCAGGTGGG 62.425 60.000 5.01 0.00 32.71 4.61
830 844 1.152756 GGCCGGCCCAATTATCAGT 60.153 57.895 36.64 0.00 0.00 3.41
840 854 3.298619 CCAATTATCAGTTGGGCCATGA 58.701 45.455 7.26 10.14 41.90 3.07
845 859 1.679977 CAGTTGGGCCATGACTGGG 60.680 63.158 24.60 6.00 43.36 4.45
902 916 3.600388 CCCGCCAGAGGATGATTATTAC 58.400 50.000 0.00 0.00 0.00 1.89
905 919 4.503123 CCGCCAGAGGATGATTATTACACA 60.503 45.833 0.00 0.00 0.00 3.72
959 973 2.359975 CCCGTTTGGCCACCTCTC 60.360 66.667 3.88 0.00 0.00 3.20
960 974 2.359975 CCGTTTGGCCACCTCTCC 60.360 66.667 3.88 0.00 0.00 3.71
961 975 2.750350 CGTTTGGCCACCTCTCCT 59.250 61.111 3.88 0.00 0.00 3.69
962 976 1.376037 CGTTTGGCCACCTCTCCTC 60.376 63.158 3.88 0.00 0.00 3.71
963 977 1.002011 GTTTGGCCACCTCTCCTCC 60.002 63.158 3.88 0.00 0.00 4.30
964 978 1.463214 TTTGGCCACCTCTCCTCCA 60.463 57.895 3.88 0.00 0.00 3.86
965 979 1.779061 TTTGGCCACCTCTCCTCCAC 61.779 60.000 3.88 0.00 0.00 4.02
966 980 3.403558 GGCCACCTCTCCTCCACC 61.404 72.222 0.00 0.00 0.00 4.61
967 981 3.775654 GCCACCTCTCCTCCACCG 61.776 72.222 0.00 0.00 0.00 4.94
968 982 2.283966 CCACCTCTCCTCCACCGT 60.284 66.667 0.00 0.00 0.00 4.83
969 983 1.913762 CCACCTCTCCTCCACCGTT 60.914 63.158 0.00 0.00 0.00 4.44
970 984 1.293498 CACCTCTCCTCCACCGTTG 59.707 63.158 0.00 0.00 0.00 4.10
971 985 2.266055 CCTCTCCTCCACCGTTGC 59.734 66.667 0.00 0.00 0.00 4.17
972 986 2.125912 CTCTCCTCCACCGTTGCG 60.126 66.667 0.00 0.00 0.00 4.85
1002 1016 3.568000 TGCCAGGCACGATTACAAT 57.432 47.368 11.22 0.00 31.71 2.71
1003 1017 1.378531 TGCCAGGCACGATTACAATC 58.621 50.000 11.22 0.00 31.71 2.67
1011 1025 3.340789 GATTACAATCGGCCGGGC 58.659 61.111 27.83 20.04 0.00 6.13
1012 1026 2.203294 ATTACAATCGGCCGGGCC 60.203 61.111 28.61 28.61 46.75 5.80
1093 1137 8.816894 TCTAGGATTAGGATTAGGTTAATGCAG 58.183 37.037 0.00 0.00 38.75 4.41
1489 1553 5.528690 GTGCTGTCTAATGGATGCAGATTAA 59.471 40.000 0.00 0.00 37.11 1.40
1801 1869 6.942532 TTGTAATAGATTGGATTCAGCCAC 57.057 37.500 0.00 0.00 37.75 5.01
2038 2106 5.743117 AGCTCATTGATAGCAAAACTCTCT 58.257 37.500 0.00 0.00 42.62 3.10
2077 2145 1.338973 TCTCGTTTGAACTGTAGCCGT 59.661 47.619 0.00 0.00 0.00 5.68
2098 2166 8.303876 AGCCGTTTTTATGTTATGACTGAAATT 58.696 29.630 0.00 0.00 0.00 1.82
2115 2183 6.183361 ACTGAAATTTGTTCATCCAAATGGGT 60.183 34.615 0.00 0.00 42.63 4.51
2128 2196 4.642885 TCCAAATGGGTTTAAATCTAGGCG 59.357 41.667 0.00 0.00 38.11 5.52
2143 2211 2.170985 GCGGCATTAGCGCATACG 59.829 61.111 11.47 6.37 43.41 3.06
2163 2231 9.019764 GCATACGCAAAGAATTGTATTGTAAAT 57.980 29.630 0.00 0.00 38.85 1.40
2189 2257 8.908786 ATATTTAGGACAACATGTACATGAGG 57.091 34.615 36.36 28.05 41.20 3.86
2192 2260 2.679837 GGACAACATGTACATGAGGCAG 59.320 50.000 36.36 22.75 41.20 4.85
2216 2284 5.519722 ACATAGCAGCTGTTTGTGTTTTAC 58.480 37.500 16.64 0.00 0.00 2.01
2217 2285 5.299279 ACATAGCAGCTGTTTGTGTTTTACT 59.701 36.000 16.64 1.39 0.00 2.24
2218 2286 4.292977 AGCAGCTGTTTGTGTTTTACTC 57.707 40.909 16.64 0.00 0.00 2.59
2219 2287 3.066760 AGCAGCTGTTTGTGTTTTACTCC 59.933 43.478 16.64 0.00 0.00 3.85
2220 2288 3.795488 GCAGCTGTTTGTGTTTTACTCCC 60.795 47.826 16.64 0.00 0.00 4.30
2221 2289 3.632145 CAGCTGTTTGTGTTTTACTCCCT 59.368 43.478 5.25 0.00 0.00 4.20
2222 2290 3.883489 AGCTGTTTGTGTTTTACTCCCTC 59.117 43.478 0.00 0.00 0.00 4.30
2223 2291 3.004419 GCTGTTTGTGTTTTACTCCCTCC 59.996 47.826 0.00 0.00 0.00 4.30
2224 2292 3.207778 TGTTTGTGTTTTACTCCCTCCG 58.792 45.455 0.00 0.00 0.00 4.63
2225 2293 3.208594 GTTTGTGTTTTACTCCCTCCGT 58.791 45.455 0.00 0.00 0.00 4.69
2226 2294 2.825861 TGTGTTTTACTCCCTCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
2227 2295 1.345415 TGTGTTTTACTCCCTCCGTCC 59.655 52.381 0.00 0.00 0.00 4.79
2228 2296 0.978907 TGTTTTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
2229 2297 0.978907 GTTTTACTCCCTCCGTCCCA 59.021 55.000 0.00 0.00 0.00 4.37
2230 2298 1.558294 GTTTTACTCCCTCCGTCCCAT 59.442 52.381 0.00 0.00 0.00 4.00
2231 2299 2.767960 GTTTTACTCCCTCCGTCCCATA 59.232 50.000 0.00 0.00 0.00 2.74
2232 2300 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
2233 2301 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
2234 2302 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
2235 2303 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2236 2304 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2237 2305 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2238 2306 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2239 2307 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2240 2308 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2241 2309 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2242 2310 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2243 2311 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2244 2312 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2245 2313 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2246 2314 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2247 2315 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2248 2316 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
2249 2317 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
2250 2318 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2251 2319 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2252 2320 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2258 2326 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
2259 2327 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
2260 2328 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
2261 2329 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
2274 2342 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
2275 2343 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
2276 2344 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
2277 2345 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
2278 2346 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
2279 2347 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
2280 2348 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
2286 2354 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2287 2355 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
2288 2356 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2289 2357 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
2290 2358 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2291 2359 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2292 2360 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2293 2361 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2294 2362 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2295 2363 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2296 2364 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2297 2365 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2298 2366 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2313 2382 5.595952 GGAGGGAGTAGATTTTTAGTACGGA 59.404 44.000 0.00 0.00 0.00 4.69
2347 2416 8.554528 GGACATGTTTGTGAGTTCTGATATATG 58.445 37.037 0.00 0.00 35.79 1.78
2391 2460 5.392380 CCCTAAAAACTCATCTCACATGTGC 60.392 44.000 21.38 0.00 0.00 4.57
2427 2496 7.499895 ACCAAAGTAGGTTCAGTTCGAATTTTA 59.500 33.333 0.00 0.00 39.34 1.52
2468 2537 3.005472 TGGCTAACATATAGCTCCGACAC 59.995 47.826 7.34 0.00 40.25 3.67
2572 2641 3.853671 CGCTTGAATGTAGCATTTGAACC 59.146 43.478 0.00 0.00 38.55 3.62
2754 2823 1.751924 ACTTCATCCGTGACTCTAGCC 59.248 52.381 0.00 0.00 33.11 3.93
2962 3031 4.920640 TCGTCCTGATGTAAAGGATCTC 57.079 45.455 0.00 0.00 45.47 2.75
3061 3133 3.055021 TGATGAGGCGGGTTTACAACATA 60.055 43.478 0.00 0.00 0.00 2.29
3077 3149 1.133025 ACATATTGCGCAAGAGTTGGC 59.867 47.619 28.62 0.00 43.02 4.52
3180 3252 7.522236 GCTTAAATGGATATCTTAAGTGCCACC 60.522 40.741 17.57 2.57 35.81 4.61
3449 3533 3.319122 GGCCACACCAATATTGAAGGATC 59.681 47.826 17.23 2.22 38.86 3.36
3479 3564 7.823745 ATGTCTTGTCCTTACAAATGTTTCT 57.176 32.000 0.00 0.00 44.79 2.52
3526 3611 6.939132 AAAGCTATTCATCTTGAGTGGATG 57.061 37.500 0.00 0.00 41.14 3.51
3557 4479 5.164620 TGAGCATGGTACTTTCAGATTCA 57.835 39.130 0.00 0.00 0.00 2.57
3584 4506 0.823356 GCCAGCTCAGGGAAACACAA 60.823 55.000 0.00 0.00 0.00 3.33
3589 4511 1.615392 GCTCAGGGAAACACAATTGCT 59.385 47.619 5.05 0.00 0.00 3.91
3593 4515 4.440880 TCAGGGAAACACAATTGCTTTTG 58.559 39.130 5.05 0.00 0.00 2.44
3647 4569 5.689383 TGTCCACAGCTCAAAAGTTTATC 57.311 39.130 0.00 0.00 0.00 1.75
3793 4756 9.179909 CCAGAGTTATGTATCGAGGTCTATTAT 57.820 37.037 0.00 0.00 0.00 1.28
3816 4779 9.537192 TTATGTTGTTACTGAATATAACCCTCG 57.463 33.333 0.00 0.00 32.52 4.63
3817 4780 6.342906 TGTTGTTACTGAATATAACCCTCGG 58.657 40.000 0.00 0.00 32.52 4.63
3818 4781 5.540400 TGTTACTGAATATAACCCTCGGG 57.460 43.478 0.00 0.00 42.03 5.14
3835 4798 3.329386 TCGGGTATCGAGGTCTATTACG 58.671 50.000 0.00 0.00 43.74 3.18
3836 4799 3.070018 CGGGTATCGAGGTCTATTACGT 58.930 50.000 0.00 0.00 42.43 3.57
3837 4800 3.499918 CGGGTATCGAGGTCTATTACGTT 59.500 47.826 0.00 0.00 42.43 3.99
3838 4801 4.612259 CGGGTATCGAGGTCTATTACGTTG 60.612 50.000 0.00 0.00 42.43 4.10
3839 4802 4.276926 GGGTATCGAGGTCTATTACGTTGT 59.723 45.833 0.00 0.00 0.00 3.32
3840 4803 5.221126 GGGTATCGAGGTCTATTACGTTGTT 60.221 44.000 0.00 0.00 0.00 2.83
3841 4804 6.017109 GGGTATCGAGGTCTATTACGTTGTTA 60.017 42.308 0.00 0.00 0.00 2.41
3842 4805 6.853362 GGTATCGAGGTCTATTACGTTGTTAC 59.147 42.308 0.00 0.00 34.56 2.50
3843 4806 6.690194 ATCGAGGTCTATTACGTTGTTACT 57.310 37.500 0.00 0.00 0.00 2.24
3844 4807 5.872635 TCGAGGTCTATTACGTTGTTACTG 58.127 41.667 0.00 0.00 0.00 2.74
3845 4808 5.643348 TCGAGGTCTATTACGTTGTTACTGA 59.357 40.000 0.00 0.00 0.00 3.41
3846 4809 5.964168 CGAGGTCTATTACGTTGTTACTGAG 59.036 44.000 0.00 0.00 0.00 3.35
3847 4810 6.402983 CGAGGTCTATTACGTTGTTACTGAGT 60.403 42.308 0.00 0.00 0.00 3.41
3848 4811 7.201556 CGAGGTCTATTACGTTGTTACTGAGTA 60.202 40.741 0.00 0.00 0.00 2.59
3849 4812 8.517062 AGGTCTATTACGTTGTTACTGAGTAT 57.483 34.615 0.00 0.00 0.00 2.12
3850 4813 9.618890 AGGTCTATTACGTTGTTACTGAGTATA 57.381 33.333 0.00 0.00 0.00 1.47
3854 4817 9.455847 CTATTACGTTGTTACTGAGTATAACCC 57.544 37.037 0.00 0.00 0.00 4.11
3855 4818 5.077134 ACGTTGTTACTGAGTATAACCCC 57.923 43.478 11.95 0.00 0.00 4.95
3856 4819 4.081476 ACGTTGTTACTGAGTATAACCCCC 60.081 45.833 11.95 0.00 0.00 5.40
3930 4893 8.099364 TCTTGGAAAAACTATCACAAAGCTAG 57.901 34.615 0.00 0.00 0.00 3.42
4043 5007 4.448210 TCTGCGGAAGTTACTCTTGTTTT 58.552 39.130 0.00 0.00 36.40 2.43
4143 5107 0.595095 CTGCCAGTTCCTTTCAGTGC 59.405 55.000 0.00 0.00 0.00 4.40
4701 5668 5.349270 TGGGTAAATCGAAATAACAGTGACG 59.651 40.000 0.00 0.00 0.00 4.35
4803 5772 5.443283 TGAAGCATATTCAAGAGGCAGAAT 58.557 37.500 0.00 0.00 38.05 2.40
5274 6248 3.648545 GCTCCCTCCATCCAAGTTATACT 59.351 47.826 0.00 0.00 0.00 2.12
5276 6250 4.890988 TCCCTCCATCCAAGTTATACTGA 58.109 43.478 0.00 0.00 0.00 3.41
5293 6267 8.501580 GTTATACTGAGTTGTTTGGTTAGGAAC 58.498 37.037 0.00 0.00 0.00 3.62
5294 6268 4.850680 ACTGAGTTGTTTGGTTAGGAACA 58.149 39.130 0.00 0.00 34.22 3.18
5472 6446 8.757877 TCAAATAGGTGCTTTTTGGCTTATAAT 58.242 29.630 0.00 0.00 34.70 1.28
5542 7631 6.591834 ACAAGATCTAGACAAATTTGGTCGAG 59.408 38.462 21.74 18.79 40.20 4.04
5562 7651 4.389077 CGAGCTTAAACTACTTGGACTTGG 59.611 45.833 0.00 0.00 0.00 3.61
5567 7656 3.771577 AACTACTTGGACTTGGGACAG 57.228 47.619 0.00 0.00 42.39 3.51
5882 7997 7.882791 ACATGATTACATCCTTACAAACACAGA 59.117 33.333 0.00 0.00 34.15 3.41
6030 8164 0.328258 CAATCGGACCCCTCAAACCT 59.672 55.000 0.00 0.00 0.00 3.50
6032 8166 0.840722 ATCGGACCCCTCAAACCTGT 60.841 55.000 0.00 0.00 0.00 4.00
6091 8226 0.757188 TGAATTTGCCACCCAACCGT 60.757 50.000 0.00 0.00 31.97 4.83
6100 8235 0.466963 CACCCAACCGTATCCCCTAC 59.533 60.000 0.00 0.00 0.00 3.18
6101 8236 0.692083 ACCCAACCGTATCCCCTACC 60.692 60.000 0.00 0.00 0.00 3.18
6102 8237 0.399519 CCCAACCGTATCCCCTACCT 60.400 60.000 0.00 0.00 0.00 3.08
6103 8238 0.756903 CCAACCGTATCCCCTACCTG 59.243 60.000 0.00 0.00 0.00 4.00
6112 8249 2.543797 CCCCTACCTGGCCCAAACA 61.544 63.158 0.00 0.00 0.00 2.83
6348 8486 0.725133 TCCCCATTTCCTCCCTCTCT 59.275 55.000 0.00 0.00 0.00 3.10
6362 8500 1.653094 CTCTCTCTCCTGTTCGCGCT 61.653 60.000 5.56 0.00 0.00 5.92
6394 8532 0.836400 TCGCTTCCCTCTCCCTTTGT 60.836 55.000 0.00 0.00 0.00 2.83
6396 8534 0.402121 GCTTCCCTCTCCCTTTGTGT 59.598 55.000 0.00 0.00 0.00 3.72
6413 8551 1.070786 GTTCTGGCCTCGTTGTCCA 59.929 57.895 3.32 0.00 0.00 4.02
6463 9579 9.338622 GATTATGTACTACAAAATGCTAACCCT 57.661 33.333 0.00 0.00 0.00 4.34
6487 9603 2.547640 ATCCAGGCTGCTCGCATTGT 62.548 55.000 9.56 0.00 41.67 2.71
6580 9699 1.679032 GGCGCCAAAGTAGGAGATGTT 60.679 52.381 24.80 0.00 0.00 2.71
6693 9815 1.871077 CATGCGCAGTTCAAGCTCA 59.129 52.632 18.32 0.00 0.00 4.26
6712 9834 3.458163 CCAAGCGTAGGAGGCGGA 61.458 66.667 0.00 0.00 33.62 5.54
6768 9890 2.915659 TCGAGGTGGCGGTGAACT 60.916 61.111 0.00 0.00 0.00 3.01
6798 9920 1.741770 GGCGAGGCGAATGTGAAGT 60.742 57.895 0.00 0.00 0.00 3.01
6815 9937 1.803519 GTGTGAGGAGCTCTTCGCG 60.804 63.158 27.82 0.00 45.59 5.87
6816 9938 2.202676 GTGAGGAGCTCTTCGCGG 60.203 66.667 21.69 0.00 45.59 6.46
6817 9939 2.361230 TGAGGAGCTCTTCGCGGA 60.361 61.111 19.71 0.00 45.59 5.54
7002 10159 2.094026 TGTGTGAGAATGAGGGATGACG 60.094 50.000 0.00 0.00 0.00 4.35
7037 10194 4.223964 GCTTCCGAACGCATCCGC 62.224 66.667 0.00 0.00 38.22 5.54
7077 10234 5.527582 CACTTTTGCTAGGTCTTGTTGTAGT 59.472 40.000 0.00 0.00 0.00 2.73
7216 10373 2.413310 AAGAAACACCACAGGAACGT 57.587 45.000 0.00 0.00 0.00 3.99
7312 10469 3.007398 GCGATAGTGATCCTGGGAAATCT 59.993 47.826 0.00 0.00 39.35 2.40
7315 10472 3.659183 AGTGATCCTGGGAAATCTTGG 57.341 47.619 0.00 0.00 0.00 3.61
7369 10526 2.479837 TCTGTTTGTGCTACAGTTCGG 58.520 47.619 0.00 1.83 42.77 4.30
7375 10532 2.750948 TGTGCTACAGTTCGGAAAGAC 58.249 47.619 0.00 0.00 0.00 3.01
7724 10884 5.888161 AGAAACCATTCACTTTCACTGTCTT 59.112 36.000 0.00 0.00 38.06 3.01
7882 11042 5.013079 TCAGAACTCATTGGTTGTCTATGGT 59.987 40.000 0.00 0.00 0.00 3.55
7894 11054 0.899019 TCTATGGTGCGTGGTGCTTA 59.101 50.000 0.00 0.00 46.63 3.09
8083 11273 4.188462 TGTTGATAGATTAGGTTGTGCCG 58.812 43.478 0.00 0.00 43.70 5.69
8255 11523 5.853572 TCCATAGTTGTCCCCTAAACTTT 57.146 39.130 0.00 0.00 37.74 2.66
8354 11635 7.815549 TGTTTAATGCGACAGTAGTTCTGATTA 59.184 33.333 3.49 0.00 46.27 1.75
8440 11725 5.707495 TGTTTAGTTGTCCCATTTAACCCT 58.293 37.500 0.00 0.00 0.00 4.34
8444 11729 2.823747 GTTGTCCCATTTAACCCTCCAC 59.176 50.000 0.00 0.00 0.00 4.02
8447 11732 1.638589 TCCCATTTAACCCTCCACAGG 59.361 52.381 0.00 0.00 39.98 4.00
8454 11739 1.772819 AACCCTCCACAGGTGCTCAG 61.773 60.000 0.00 0.00 38.30 3.35
8463 11748 2.740981 CACAGGTGCTCAGTCAAATCTC 59.259 50.000 0.00 0.00 0.00 2.75
8475 11760 4.627467 CAGTCAAATCTCCCTTGAGTTACG 59.373 45.833 0.00 0.00 39.75 3.18
8479 11764 3.870633 ATCTCCCTTGAGTTACGTGAC 57.129 47.619 1.53 1.53 39.75 3.67
8480 11765 1.891150 TCTCCCTTGAGTTACGTGACC 59.109 52.381 6.88 0.00 39.75 4.02
8481 11766 1.616865 CTCCCTTGAGTTACGTGACCA 59.383 52.381 6.88 2.35 33.70 4.02
8487 11783 4.330074 CCTTGAGTTACGTGACCATGAATC 59.670 45.833 6.88 0.00 0.00 2.52
8540 11836 5.210430 TGTGGCTGGATTTTGATATGGAAT 58.790 37.500 0.00 0.00 0.00 3.01
8543 11839 6.703165 GTGGCTGGATTTTGATATGGAATTTC 59.297 38.462 0.00 0.00 0.00 2.17
8573 11869 7.563924 AGGATCATCCATGTTTCTCAAATTCAT 59.436 33.333 6.42 0.00 39.61 2.57
8580 11876 9.246670 TCCATGTTTCTCAAATTCATAAGATGT 57.753 29.630 0.00 0.00 0.00 3.06
8666 11962 4.842531 TTTCATAAGGTCTCTGCATCCA 57.157 40.909 0.00 0.00 0.00 3.41
8683 11979 4.737054 CATCCAAATGTTTAGCAGGTCAC 58.263 43.478 0.00 0.00 0.00 3.67
8684 11980 2.811431 TCCAAATGTTTAGCAGGTCACG 59.189 45.455 0.00 0.00 0.00 4.35
8711 12008 1.251251 GCAAAGTTGGTCTGGAGCAT 58.749 50.000 3.30 0.00 38.73 3.79
8714 12011 1.813513 AAGTTGGTCTGGAGCATTCG 58.186 50.000 3.30 0.00 38.73 3.34
8726 12023 2.019984 GAGCATTCGAAATGCCCTCTT 58.980 47.619 21.22 8.92 45.59 2.85
8733 12030 1.328680 CGAAATGCCCTCTTCACATCG 59.671 52.381 0.00 0.00 0.00 3.84
8735 12032 2.029838 AATGCCCTCTTCACATCGTC 57.970 50.000 0.00 0.00 0.00 4.20
8740 12037 2.223618 GCCCTCTTCACATCGTCTCTAC 60.224 54.545 0.00 0.00 0.00 2.59
8743 12040 3.066064 CCTCTTCACATCGTCTCTACCTG 59.934 52.174 0.00 0.00 0.00 4.00
8744 12041 3.687125 TCTTCACATCGTCTCTACCTGT 58.313 45.455 0.00 0.00 0.00 4.00
8745 12042 3.440522 TCTTCACATCGTCTCTACCTGTG 59.559 47.826 0.00 0.00 37.22 3.66
8746 12043 3.067684 TCACATCGTCTCTACCTGTGA 57.932 47.619 0.00 0.00 40.09 3.58
8747 12044 3.010420 TCACATCGTCTCTACCTGTGAG 58.990 50.000 0.00 0.00 38.70 3.51
8748 12045 3.010420 CACATCGTCTCTACCTGTGAGA 58.990 50.000 0.00 0.00 37.70 3.27
8774 12071 5.902613 TTTTTGGACCAAGATAGCTGATG 57.097 39.130 7.07 0.00 0.00 3.07
8775 12072 4.842531 TTTGGACCAAGATAGCTGATGA 57.157 40.909 7.07 0.00 0.00 2.92
8776 12073 5.378230 TTTGGACCAAGATAGCTGATGAT 57.622 39.130 7.07 0.00 0.00 2.45
8777 12074 4.347360 TGGACCAAGATAGCTGATGATG 57.653 45.455 0.00 0.00 0.00 3.07
8778 12075 3.969312 TGGACCAAGATAGCTGATGATGA 59.031 43.478 0.00 0.00 0.00 2.92
8779 12076 4.596212 TGGACCAAGATAGCTGATGATGAT 59.404 41.667 0.00 0.00 0.00 2.45
8780 12077 4.936411 GGACCAAGATAGCTGATGATGATG 59.064 45.833 0.00 0.00 0.00 3.07
8781 12078 4.907809 ACCAAGATAGCTGATGATGATGG 58.092 43.478 0.00 0.00 0.00 3.51
8782 12079 4.596212 ACCAAGATAGCTGATGATGATGGA 59.404 41.667 0.00 0.00 0.00 3.41
8783 12080 5.251005 ACCAAGATAGCTGATGATGATGGAT 59.749 40.000 0.00 0.00 0.00 3.41
8784 12081 6.442885 ACCAAGATAGCTGATGATGATGGATA 59.557 38.462 0.00 0.00 0.00 2.59
8785 12082 7.127493 ACCAAGATAGCTGATGATGATGGATAT 59.873 37.037 0.00 0.00 0.00 1.63
8786 12083 7.658167 CCAAGATAGCTGATGATGATGGATATC 59.342 40.741 0.00 0.00 0.00 1.63
8787 12084 6.983984 AGATAGCTGATGATGATGGATATCG 58.016 40.000 0.00 0.00 36.04 2.92
8788 12085 6.550481 AGATAGCTGATGATGATGGATATCGT 59.450 38.462 0.00 0.00 36.04 3.73
8789 12086 5.008619 AGCTGATGATGATGGATATCGTC 57.991 43.478 0.00 0.00 45.54 4.20
8799 12096 8.445275 GATGATGGATATCGTCAGATAGTAGT 57.555 38.462 12.96 0.00 44.96 2.73
8800 12097 7.851387 TGATGGATATCGTCAGATAGTAGTC 57.149 40.000 5.58 0.00 42.09 2.59
8801 12098 6.824196 TGATGGATATCGTCAGATAGTAGTCC 59.176 42.308 5.58 0.00 42.09 3.85
8802 12099 6.123045 TGGATATCGTCAGATAGTAGTCCA 57.877 41.667 0.00 5.11 42.09 4.02
8803 12100 6.722328 TGGATATCGTCAGATAGTAGTCCAT 58.278 40.000 0.00 0.00 42.09 3.41
8804 12101 6.599638 TGGATATCGTCAGATAGTAGTCCATG 59.400 42.308 0.00 0.00 42.09 3.66
8805 12102 6.600032 GGATATCGTCAGATAGTAGTCCATGT 59.400 42.308 0.00 0.00 42.09 3.21
8806 12103 7.121463 GGATATCGTCAGATAGTAGTCCATGTT 59.879 40.741 0.00 0.00 42.09 2.71
8807 12104 5.500645 TCGTCAGATAGTAGTCCATGTTG 57.499 43.478 0.00 0.00 0.00 3.33
8808 12105 4.948004 TCGTCAGATAGTAGTCCATGTTGT 59.052 41.667 0.00 0.00 0.00 3.32
8809 12106 6.117488 TCGTCAGATAGTAGTCCATGTTGTA 58.883 40.000 0.00 0.00 0.00 2.41
8810 12107 6.771267 TCGTCAGATAGTAGTCCATGTTGTAT 59.229 38.462 0.00 0.00 0.00 2.29
8811 12108 7.284716 TCGTCAGATAGTAGTCCATGTTGTATT 59.715 37.037 0.00 0.00 0.00 1.89
8812 12109 7.591795 CGTCAGATAGTAGTCCATGTTGTATTC 59.408 40.741 0.00 0.00 0.00 1.75
8813 12110 8.414003 GTCAGATAGTAGTCCATGTTGTATTCA 58.586 37.037 0.00 0.00 0.00 2.57
8814 12111 9.147732 TCAGATAGTAGTCCATGTTGTATTCAT 57.852 33.333 0.00 0.00 0.00 2.57
8815 12112 9.201127 CAGATAGTAGTCCATGTTGTATTCATG 57.799 37.037 0.00 0.00 41.34 3.07
8816 12113 8.928448 AGATAGTAGTCCATGTTGTATTCATGT 58.072 33.333 0.00 0.00 40.43 3.21
8817 12114 9.197694 GATAGTAGTCCATGTTGTATTCATGTC 57.802 37.037 0.00 0.00 40.43 3.06
8818 12115 6.349300 AGTAGTCCATGTTGTATTCATGTCC 58.651 40.000 0.00 0.00 40.43 4.02
8819 12116 5.178096 AGTCCATGTTGTATTCATGTCCA 57.822 39.130 0.00 0.00 40.43 4.02
8820 12117 5.759059 AGTCCATGTTGTATTCATGTCCAT 58.241 37.500 0.00 0.00 40.43 3.41
8821 12118 6.189859 AGTCCATGTTGTATTCATGTCCATT 58.810 36.000 0.00 0.00 40.43 3.16
8822 12119 6.095860 AGTCCATGTTGTATTCATGTCCATTG 59.904 38.462 0.00 0.00 40.43 2.82
8823 12120 6.095300 GTCCATGTTGTATTCATGTCCATTGA 59.905 38.462 0.00 0.00 40.43 2.57
8824 12121 6.834969 TCCATGTTGTATTCATGTCCATTGAT 59.165 34.615 0.00 0.00 40.43 2.57
8825 12122 7.997803 TCCATGTTGTATTCATGTCCATTGATA 59.002 33.333 0.00 0.00 40.43 2.15
8826 12123 8.294577 CCATGTTGTATTCATGTCCATTGATAG 58.705 37.037 0.00 0.00 40.43 2.08
8827 12124 8.843262 CATGTTGTATTCATGTCCATTGATAGT 58.157 33.333 0.00 0.00 38.17 2.12
8828 12125 8.806429 TGTTGTATTCATGTCCATTGATAGTT 57.194 30.769 0.00 0.00 0.00 2.24
8829 12126 9.898152 TGTTGTATTCATGTCCATTGATAGTTA 57.102 29.630 0.00 0.00 0.00 2.24
8840 12137 9.429109 TGTCCATTGATAGTTATACTACAAGGA 57.571 33.333 11.60 11.29 32.84 3.36
8841 12138 9.915629 GTCCATTGATAGTTATACTACAAGGAG 57.084 37.037 11.60 0.00 32.84 3.69
8842 12139 9.090103 TCCATTGATAGTTATACTACAAGGAGG 57.910 37.037 11.60 10.21 32.84 4.30
8843 12140 8.871125 CCATTGATAGTTATACTACAAGGAGGT 58.129 37.037 11.60 0.00 32.84 3.85
8846 12143 9.710818 TTGATAGTTATACTACAAGGAGGTTCT 57.289 33.333 0.00 0.00 32.84 3.01
8847 12144 9.710818 TGATAGTTATACTACAAGGAGGTTCTT 57.289 33.333 0.00 0.00 32.84 2.52
8850 12147 8.667592 AGTTATACTACAAGGAGGTTCTTTCT 57.332 34.615 0.00 0.00 0.00 2.52
8851 12148 8.532819 AGTTATACTACAAGGAGGTTCTTTCTG 58.467 37.037 0.00 0.00 0.00 3.02
8852 12149 4.625607 ACTACAAGGAGGTTCTTTCTGG 57.374 45.455 0.00 0.00 0.00 3.86
8853 12150 3.974642 ACTACAAGGAGGTTCTTTCTGGT 59.025 43.478 0.00 0.00 0.00 4.00
8854 12151 3.214696 ACAAGGAGGTTCTTTCTGGTG 57.785 47.619 0.00 0.00 0.00 4.17
8855 12152 2.777692 ACAAGGAGGTTCTTTCTGGTGA 59.222 45.455 0.00 0.00 0.00 4.02
8856 12153 3.181450 ACAAGGAGGTTCTTTCTGGTGAG 60.181 47.826 0.00 0.00 0.00 3.51
8857 12154 2.977808 AGGAGGTTCTTTCTGGTGAGA 58.022 47.619 0.00 0.00 0.00 3.27
8858 12155 3.525862 AGGAGGTTCTTTCTGGTGAGAT 58.474 45.455 0.00 0.00 0.00 2.75
8859 12156 3.517500 AGGAGGTTCTTTCTGGTGAGATC 59.482 47.826 0.00 0.00 0.00 2.75
8860 12157 3.369997 GGAGGTTCTTTCTGGTGAGATCC 60.370 52.174 0.00 0.00 33.74 3.36
8861 12158 3.517500 GAGGTTCTTTCTGGTGAGATCCT 59.482 47.826 3.34 3.34 42.16 3.24
8862 12159 4.689062 AGGTTCTTTCTGGTGAGATCCTA 58.311 43.478 2.07 0.00 39.28 2.94
8863 12160 5.284582 AGGTTCTTTCTGGTGAGATCCTAT 58.715 41.667 2.07 0.00 39.28 2.57
8875 12172 4.383052 GTGAGATCCTATTGTAATGCGACG 59.617 45.833 0.00 0.00 0.00 5.12
8926 12245 4.860802 TTCCTATGGCATCCTTCTTCAA 57.139 40.909 1.65 0.00 0.00 2.69
8927 12246 4.428294 TCCTATGGCATCCTTCTTCAAG 57.572 45.455 1.65 0.00 0.00 3.02
8928 12247 4.040047 TCCTATGGCATCCTTCTTCAAGA 58.960 43.478 1.65 0.00 0.00 3.02
8954 12273 2.638556 AGTCATCAAAGGACGAGACG 57.361 50.000 0.00 0.00 40.20 4.18
8959 12278 0.317160 TCAAAGGACGAGACGCATGT 59.683 50.000 0.00 0.00 0.00 3.21
8990 12309 6.306397 CGATCGAAGACATTTTTCACATTCA 58.694 36.000 10.26 0.00 42.51 2.57
9007 12326 5.566774 CACATTCAAAAGAGCTAGCGAAAAG 59.433 40.000 9.55 5.74 0.00 2.27
9008 12327 5.239525 ACATTCAAAAGAGCTAGCGAAAAGT 59.760 36.000 9.55 6.31 0.00 2.66
9009 12328 4.732285 TCAAAAGAGCTAGCGAAAAGTG 57.268 40.909 9.55 5.13 0.00 3.16
9010 12329 3.498397 TCAAAAGAGCTAGCGAAAAGTGG 59.502 43.478 9.55 0.00 0.00 4.00
9011 12330 2.100605 AAGAGCTAGCGAAAAGTGGG 57.899 50.000 9.55 0.00 0.00 4.61
9012 12331 0.250513 AGAGCTAGCGAAAAGTGGGG 59.749 55.000 9.55 0.00 0.00 4.96
9013 12332 0.744771 GAGCTAGCGAAAAGTGGGGG 60.745 60.000 9.55 0.00 0.00 5.40
9014 12333 2.407428 GCTAGCGAAAAGTGGGGGC 61.407 63.158 0.00 0.00 0.00 5.80
9015 12334 1.002624 CTAGCGAAAAGTGGGGGCA 60.003 57.895 0.00 0.00 0.00 5.36
9016 12335 0.608035 CTAGCGAAAAGTGGGGGCAA 60.608 55.000 0.00 0.00 0.00 4.52
9017 12336 0.608035 TAGCGAAAAGTGGGGGCAAG 60.608 55.000 0.00 0.00 0.00 4.01
9018 12337 2.931068 GCGAAAAGTGGGGGCAAGG 61.931 63.158 0.00 0.00 0.00 3.61
9019 12338 1.530655 CGAAAAGTGGGGGCAAGGT 60.531 57.895 0.00 0.00 0.00 3.50
9020 12339 0.250989 CGAAAAGTGGGGGCAAGGTA 60.251 55.000 0.00 0.00 0.00 3.08
9021 12340 1.545841 GAAAAGTGGGGGCAAGGTAG 58.454 55.000 0.00 0.00 0.00 3.18
9022 12341 0.541998 AAAAGTGGGGGCAAGGTAGC 60.542 55.000 0.00 0.00 0.00 3.58
9029 12348 4.506255 GGCAAGGTAGCCGCCCAT 62.506 66.667 11.07 0.00 46.12 4.00
9030 12349 2.440247 GCAAGGTAGCCGCCCATT 60.440 61.111 0.00 0.00 0.00 3.16
9031 12350 1.153046 GCAAGGTAGCCGCCCATTA 60.153 57.895 0.00 0.00 0.00 1.90
9032 12351 1.166531 GCAAGGTAGCCGCCCATTAG 61.167 60.000 0.00 0.00 0.00 1.73
9033 12352 1.148498 AAGGTAGCCGCCCATTAGC 59.852 57.895 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 4.320608 AATTTCTCCGAGCTTTGCAAAA 57.679 36.364 13.84 0.00 0.00 2.44
98 99 1.200020 CCGCAAATTTCTCCGAGCTTT 59.800 47.619 0.00 0.00 0.00 3.51
104 105 0.730840 GGGTACCGCAAATTTCTCCG 59.269 55.000 5.65 0.00 40.86 4.63
132 133 2.080693 ACACGATCTATTTTGCGCCAA 58.919 42.857 4.18 0.00 0.00 4.52
140 141 5.425630 GGGGTGAGTTTACACGATCTATTT 58.574 41.667 0.00 0.00 41.12 1.40
143 144 2.424601 CGGGGTGAGTTTACACGATCTA 59.575 50.000 0.00 0.00 41.12 1.98
149 150 1.310904 TTTGCGGGGTGAGTTTACAC 58.689 50.000 0.00 0.00 39.70 2.90
151 152 3.653539 AATTTTGCGGGGTGAGTTTAC 57.346 42.857 0.00 0.00 0.00 2.01
155 156 4.882842 ATAAAAATTTTGCGGGGTGAGT 57.117 36.364 3.73 0.00 0.00 3.41
164 165 7.306205 TGCATGAGGCTTATAAAAATTTTGC 57.694 32.000 3.73 2.96 45.15 3.68
174 175 6.449635 AAATTCGTTTGCATGAGGCTTATA 57.550 33.333 0.00 0.00 45.15 0.98
175 176 4.989279 AATTCGTTTGCATGAGGCTTAT 57.011 36.364 0.00 0.00 45.15 1.73
176 177 4.782019 AAATTCGTTTGCATGAGGCTTA 57.218 36.364 0.00 0.00 45.15 3.09
178 179 3.665745 AAAATTCGTTTGCATGAGGCT 57.334 38.095 0.00 0.00 45.15 4.58
179 180 3.859386 CCTAAAATTCGTTTGCATGAGGC 59.141 43.478 0.00 0.00 45.13 4.70
184 185 4.680440 GCATCCCCTAAAATTCGTTTGCAT 60.680 41.667 0.00 0.00 0.00 3.96
187 188 4.448537 TGCATCCCCTAAAATTCGTTTG 57.551 40.909 0.00 0.00 0.00 2.93
193 194 6.394809 CGTTAAAGTTGCATCCCCTAAAATT 58.605 36.000 0.00 0.00 0.00 1.82
201 202 4.556699 GCATATCCGTTAAAGTTGCATCCC 60.557 45.833 0.00 0.00 0.00 3.85
215 216 1.700955 AACCGTCCTAGCATATCCGT 58.299 50.000 0.00 0.00 0.00 4.69
221 222 2.093128 CCTACCAAAACCGTCCTAGCAT 60.093 50.000 0.00 0.00 0.00 3.79
224 225 1.553704 AGCCTACCAAAACCGTCCTAG 59.446 52.381 0.00 0.00 0.00 3.02
233 234 2.298729 GGTTTGATGCAGCCTACCAAAA 59.701 45.455 15.34 0.00 0.00 2.44
260 261 1.736126 CTACTTAGCACGTCGGAGTCA 59.264 52.381 0.00 0.00 0.00 3.41
262 263 1.467734 CACTACTTAGCACGTCGGAGT 59.532 52.381 0.00 0.00 0.00 3.85
266 267 2.896243 ACTCACTACTTAGCACGTCG 57.104 50.000 0.00 0.00 0.00 5.12
271 272 5.433526 ACCAAAACAACTCACTACTTAGCA 58.566 37.500 0.00 0.00 0.00 3.49
308 309 2.905075 TCATGCGGGTCAGTTTCTATG 58.095 47.619 0.00 0.00 0.00 2.23
309 310 3.627395 TTCATGCGGGTCAGTTTCTAT 57.373 42.857 0.00 0.00 0.00 1.98
317 318 2.227865 GCTTTAAGTTTCATGCGGGTCA 59.772 45.455 0.00 0.00 0.00 4.02
375 376 7.016268 AGGCCCAATCTATATCTAGAAAAACGA 59.984 37.037 0.00 0.00 37.52 3.85
384 385 9.784376 AATTACAGTAGGCCCAATCTATATCTA 57.216 33.333 0.00 0.00 0.00 1.98
390 391 7.126726 AGTGTAAATTACAGTAGGCCCAATCTA 59.873 37.037 11.43 0.00 40.39 1.98
421 422 4.452455 CGTCAAGTTTAGTTTGCATCCTCT 59.548 41.667 0.00 0.00 0.00 3.69
427 428 5.110598 TGACTACGTCAAGTTTAGTTTGCA 58.889 37.500 0.00 0.00 39.78 4.08
443 444 2.069273 CTGAGCTTTGGGTTGACTACG 58.931 52.381 0.00 0.00 0.00 3.51
445 446 2.054799 ACCTGAGCTTTGGGTTGACTA 58.945 47.619 10.14 0.00 0.00 2.59
482 483 1.665442 GGCCACATGTCACCCAAAC 59.335 57.895 0.00 0.00 0.00 2.93
542 543 3.263425 GGTGGAGAAAGATAGGTGACCAA 59.737 47.826 3.63 0.00 0.00 3.67
545 546 2.496470 ACGGTGGAGAAAGATAGGTGAC 59.504 50.000 0.00 0.00 0.00 3.67
552 553 4.592485 CAGCTATACGGTGGAGAAAGAT 57.408 45.455 0.00 0.00 37.47 2.40
594 595 4.980702 TGCTTGTGGGCTGGCCTG 62.981 66.667 21.72 4.26 36.10 4.85
634 635 0.319211 TTTAGCCCGTGTCGTGTCTG 60.319 55.000 0.00 0.00 0.00 3.51
635 636 0.319297 GTTTAGCCCGTGTCGTGTCT 60.319 55.000 0.00 0.00 0.00 3.41
636 637 0.598158 TGTTTAGCCCGTGTCGTGTC 60.598 55.000 0.00 0.00 0.00 3.67
637 638 0.599204 CTGTTTAGCCCGTGTCGTGT 60.599 55.000 0.00 0.00 0.00 4.49
638 639 0.319211 TCTGTTTAGCCCGTGTCGTG 60.319 55.000 0.00 0.00 0.00 4.35
639 640 0.606604 ATCTGTTTAGCCCGTGTCGT 59.393 50.000 0.00 0.00 0.00 4.34
640 641 1.278238 GATCTGTTTAGCCCGTGTCG 58.722 55.000 0.00 0.00 0.00 4.35
641 642 1.278238 CGATCTGTTTAGCCCGTGTC 58.722 55.000 0.00 0.00 0.00 3.67
642 643 0.108329 CCGATCTGTTTAGCCCGTGT 60.108 55.000 0.00 0.00 0.00 4.49
643 644 0.810031 CCCGATCTGTTTAGCCCGTG 60.810 60.000 0.00 0.00 0.00 4.94
644 645 1.520666 CCCGATCTGTTTAGCCCGT 59.479 57.895 0.00 0.00 0.00 5.28
645 646 1.887707 GCCCGATCTGTTTAGCCCG 60.888 63.158 0.00 0.00 0.00 6.13
646 647 1.526225 GGCCCGATCTGTTTAGCCC 60.526 63.158 0.00 0.00 34.23 5.19
675 676 2.949909 AAGCACGACCCATGGCGTA 61.950 57.895 15.75 0.00 34.79 4.42
681 682 1.968017 CAGCACAAGCACGACCCAT 60.968 57.895 0.00 0.00 45.49 4.00
686 687 1.374631 CCTAGCAGCACAAGCACGA 60.375 57.895 0.00 0.00 45.49 4.35
712 713 3.499929 ATAGTCATGTCGGCCCGCG 62.500 63.158 0.00 0.00 0.00 6.46
721 722 7.242359 AGGCTAGTATTAGGTCATAGTCATGT 58.758 38.462 0.00 0.00 33.57 3.21
724 725 7.986704 ACTAGGCTAGTATTAGGTCATAGTCA 58.013 38.462 25.19 0.00 37.23 3.41
725 726 9.603921 CTACTAGGCTAGTATTAGGTCATAGTC 57.396 40.741 29.32 0.00 40.25 2.59
728 729 8.691194 TCCTACTAGGCTAGTATTAGGTCATA 57.309 38.462 29.32 13.74 40.25 2.15
729 730 7.585884 TCCTACTAGGCTAGTATTAGGTCAT 57.414 40.000 29.32 6.98 40.25 3.06
730 731 7.398289 TTCCTACTAGGCTAGTATTAGGTCA 57.602 40.000 29.32 18.51 40.25 4.02
731 732 8.703378 TTTTCCTACTAGGCTAGTATTAGGTC 57.297 38.462 29.32 0.00 40.25 3.85
809 815 1.152756 GATAATTGGGCCGGCCTGT 60.153 57.895 42.70 26.38 36.10 4.00
821 835 3.956199 CAGTCATGGCCCAACTGATAATT 59.044 43.478 19.36 0.00 42.37 1.40
889 903 3.391296 ACGGCCTGTGTAATAATCATCCT 59.609 43.478 0.00 0.00 0.00 3.24
891 905 4.732285 CACGGCCTGTGTAATAATCATC 57.268 45.455 16.51 0.00 43.88 2.92
944 958 1.376037 GAGGAGAGGTGGCCAAACG 60.376 63.158 7.24 0.00 0.00 3.60
955 969 2.125912 CGCAACGGTGGAGGAGAG 60.126 66.667 0.90 0.00 0.00 3.20
984 998 1.378531 GATTGTAATCGTGCCTGGCA 58.621 50.000 19.30 19.30 35.60 4.92
994 1008 2.258726 GGCCCGGCCGATTGTAATC 61.259 63.158 30.73 5.56 39.62 1.75
995 1009 2.203294 GGCCCGGCCGATTGTAAT 60.203 61.111 30.73 0.00 39.62 1.89
1015 1029 2.359975 GAGAGGTGGCCAAACGGG 60.360 66.667 7.24 0.00 40.85 5.28
1016 1030 0.955919 GAAGAGAGGTGGCCAAACGG 60.956 60.000 7.24 0.00 0.00 4.44
1017 1031 0.955919 GGAAGAGAGGTGGCCAAACG 60.956 60.000 7.24 0.00 0.00 3.60
1018 1032 0.110486 TGGAAGAGAGGTGGCCAAAC 59.890 55.000 7.24 3.12 0.00 2.93
1019 1033 0.110486 GTGGAAGAGAGGTGGCCAAA 59.890 55.000 7.24 0.00 0.00 3.28
1020 1034 1.761174 GTGGAAGAGAGGTGGCCAA 59.239 57.895 7.24 0.00 0.00 4.52
1021 1035 2.224159 GGTGGAAGAGAGGTGGCCA 61.224 63.158 0.00 0.00 0.00 5.36
1024 1038 0.320771 CAACGGTGGAAGAGAGGTGG 60.321 60.000 0.00 0.00 0.00 4.61
1058 1075 5.652994 ATCCTAATCCTAGACGAAGATGC 57.347 43.478 0.00 0.00 0.00 3.91
1093 1137 4.475135 GCTCTGGGGAGGCGGTTC 62.475 72.222 0.00 0.00 39.80 3.62
1489 1553 4.180817 TCGTTGCACGATATCATGAAACT 58.819 39.130 18.09 0.00 46.73 2.66
1605 1673 7.571613 CGTCCTAACTATTCATAGAAGAGACGG 60.572 44.444 19.74 5.57 37.23 4.79
1809 1877 5.543405 AGCTAGGAACTGATCAATCTATGCT 59.457 40.000 0.00 6.67 41.52 3.79
1890 1958 0.670162 CCTGGTTTCCTGCAACACAG 59.330 55.000 0.00 0.00 46.77 3.66
1997 2065 2.932614 AGCTTGCTTCTACAACTATGCG 59.067 45.455 0.00 0.00 0.00 4.73
2038 2106 7.615582 ACGAGATGAAATGCTCTGAAAAATA 57.384 32.000 0.00 0.00 0.00 1.40
2098 2166 7.972301 AGATTTAAACCCATTTGGATGAACAA 58.028 30.769 0.00 0.00 37.39 2.83
2115 2183 3.496884 CGCTAATGCCGCCTAGATTTAAA 59.503 43.478 0.00 0.00 35.36 1.52
2163 2231 9.996554 CCTCATGTACATGTTGTCCTAAATATA 57.003 33.333 30.03 9.29 39.72 0.86
2189 2257 1.808945 ACAAACAGCTGCTATGTCTGC 59.191 47.619 15.27 0.00 0.00 4.26
2192 2260 3.904136 AACACAAACAGCTGCTATGTC 57.096 42.857 15.27 0.00 0.00 3.06
2216 2284 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2217 2285 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2218 2286 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
2219 2287 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
2220 2288 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
2221 2289 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
2222 2290 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
2223 2291 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
2224 2292 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
2225 2293 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
2226 2294 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
2232 2300 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
2233 2301 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
2234 2302 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
2235 2303 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
2236 2304 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
2237 2305 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
2238 2306 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
2251 2319 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
2252 2320 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
2253 2321 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
2260 2328 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2261 2329 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2262 2330 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2263 2331 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
2264 2332 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
2265 2333 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
2266 2334 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2267 2335 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2268 2336 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
2269 2337 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2270 2338 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2271 2339 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2272 2340 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2273 2341 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2274 2342 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2275 2343 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2276 2344 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2277 2345 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2278 2346 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
2279 2347 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
2280 2348 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
2281 2349 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
2282 2350 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
2283 2351 0.635009 AATCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
2284 2352 1.790818 AAATCTACTCCCTCCGTCCC 58.209 55.000 0.00 0.00 0.00 4.46
2285 2353 3.908643 AAAAATCTACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
2286 2354 5.595257 ACTAAAAATCTACTCCCTCCGTC 57.405 43.478 0.00 0.00 0.00 4.79
2287 2355 5.067023 CGTACTAAAAATCTACTCCCTCCGT 59.933 44.000 0.00 0.00 0.00 4.69
2288 2356 5.506982 CCGTACTAAAAATCTACTCCCTCCG 60.507 48.000 0.00 0.00 0.00 4.63
2289 2357 5.595952 TCCGTACTAAAAATCTACTCCCTCC 59.404 44.000 0.00 0.00 0.00 4.30
2290 2358 6.705863 TCCGTACTAAAAATCTACTCCCTC 57.294 41.667 0.00 0.00 0.00 4.30
2291 2359 6.837568 TCATCCGTACTAAAAATCTACTCCCT 59.162 38.462 0.00 0.00 0.00 4.20
2292 2360 7.047460 TCATCCGTACTAAAAATCTACTCCC 57.953 40.000 0.00 0.00 0.00 4.30
2293 2361 8.937634 TTTCATCCGTACTAAAAATCTACTCC 57.062 34.615 0.00 0.00 0.00 3.85
2294 2362 9.583765 ACTTTCATCCGTACTAAAAATCTACTC 57.416 33.333 0.00 0.00 0.00 2.59
2295 2363 9.367444 CACTTTCATCCGTACTAAAAATCTACT 57.633 33.333 0.00 0.00 0.00 2.57
2296 2364 8.601476 CCACTTTCATCCGTACTAAAAATCTAC 58.399 37.037 0.00 0.00 0.00 2.59
2297 2365 8.533657 TCCACTTTCATCCGTACTAAAAATCTA 58.466 33.333 0.00 0.00 0.00 1.98
2298 2366 7.333672 GTCCACTTTCATCCGTACTAAAAATCT 59.666 37.037 0.00 0.00 0.00 2.40
2313 2382 4.889409 ACTCACAAACATGTCCACTTTCAT 59.111 37.500 0.00 0.00 0.00 2.57
2347 2416 5.488341 AGGGTCATGTAACACATTAGACAC 58.512 41.667 10.24 7.58 36.53 3.67
2391 2460 5.479375 TGAACCTACTTTGGTAGTACTCCAG 59.521 44.000 0.00 0.00 42.71 3.86
2427 2496 9.369904 GTTAGCCATGTCATTGTCATTTTAAAT 57.630 29.630 0.00 0.00 0.00 1.40
2754 2823 2.808543 CCTGAGTTTGAAAAGACCGAGG 59.191 50.000 0.00 0.00 0.00 4.63
2962 3031 4.013267 AGACCAGACAGATGGAAAAGTG 57.987 45.455 0.00 0.00 43.57 3.16
3061 3133 1.582968 CTGCCAACTCTTGCGCAAT 59.417 52.632 25.26 6.01 36.75 3.56
3180 3252 3.686726 GCACTCCACTTCAACTCTTATGG 59.313 47.826 0.00 0.00 0.00 2.74
3249 3321 6.894682 TGCATCACCCATTAGTAAACATAGA 58.105 36.000 0.00 0.00 0.00 1.98
3327 3411 2.100584 AGAAAGTGCTCCTATGCTCGAG 59.899 50.000 8.45 8.45 0.00 4.04
3526 3611 3.480470 AGTACCATGCTCATATTGGCAC 58.520 45.455 2.00 0.00 41.39 5.01
3557 4479 1.690219 CCCTGAGCTGGCTTATCCGT 61.690 60.000 0.00 0.00 37.80 4.69
3647 4569 1.267806 CTTGTGTTACAGGCTGGCTTG 59.732 52.381 20.34 3.18 0.00 4.01
3793 4756 6.342906 CCGAGGGTTATATTCAGTAACAACA 58.657 40.000 0.00 0.00 34.51 3.33
3816 4779 4.276926 ACAACGTAATAGACCTCGATACCC 59.723 45.833 0.00 0.00 0.00 3.69
3817 4780 5.429957 ACAACGTAATAGACCTCGATACC 57.570 43.478 0.00 0.00 0.00 2.73
3818 4781 7.585573 CAGTAACAACGTAATAGACCTCGATAC 59.414 40.741 0.00 0.00 0.00 2.24
3819 4782 7.495606 TCAGTAACAACGTAATAGACCTCGATA 59.504 37.037 0.00 0.00 0.00 2.92
3820 4783 6.317140 TCAGTAACAACGTAATAGACCTCGAT 59.683 38.462 0.00 0.00 0.00 3.59
3821 4784 5.643348 TCAGTAACAACGTAATAGACCTCGA 59.357 40.000 0.00 0.00 0.00 4.04
3822 4785 5.872635 TCAGTAACAACGTAATAGACCTCG 58.127 41.667 0.00 0.00 0.00 4.63
3823 4786 6.850555 ACTCAGTAACAACGTAATAGACCTC 58.149 40.000 0.00 0.00 0.00 3.85
3824 4787 6.830873 ACTCAGTAACAACGTAATAGACCT 57.169 37.500 0.00 0.00 0.00 3.85
3828 4791 9.455847 GGGTTATACTCAGTAACAACGTAATAG 57.544 37.037 0.00 0.00 34.51 1.73
3829 4792 8.413229 GGGGTTATACTCAGTAACAACGTAATA 58.587 37.037 0.00 0.00 34.51 0.98
3830 4793 7.267857 GGGGTTATACTCAGTAACAACGTAAT 58.732 38.462 0.00 0.00 34.51 1.89
3831 4794 6.350949 GGGGGTTATACTCAGTAACAACGTAA 60.351 42.308 0.00 0.00 34.51 3.18
3832 4795 5.127031 GGGGGTTATACTCAGTAACAACGTA 59.873 44.000 0.00 0.00 34.51 3.57
3833 4796 4.081476 GGGGGTTATACTCAGTAACAACGT 60.081 45.833 0.00 0.00 34.51 3.99
3834 4797 4.436332 GGGGGTTATACTCAGTAACAACG 58.564 47.826 0.00 0.00 34.51 4.10
3835 4798 4.436332 CGGGGGTTATACTCAGTAACAAC 58.564 47.826 0.00 0.00 34.51 3.32
3836 4799 3.451902 CCGGGGGTTATACTCAGTAACAA 59.548 47.826 0.00 0.00 34.51 2.83
3837 4800 3.033184 CCGGGGGTTATACTCAGTAACA 58.967 50.000 0.00 0.00 34.51 2.41
3838 4801 3.299503 TCCGGGGGTTATACTCAGTAAC 58.700 50.000 0.00 0.00 0.00 2.50
3839 4802 3.569491 CTCCGGGGGTTATACTCAGTAA 58.431 50.000 0.00 0.00 0.00 2.24
3840 4803 2.754186 GCTCCGGGGGTTATACTCAGTA 60.754 54.545 1.90 0.00 0.00 2.74
3841 4804 2.033208 GCTCCGGGGGTTATACTCAGT 61.033 57.143 1.90 0.00 0.00 3.41
3842 4805 0.680061 GCTCCGGGGGTTATACTCAG 59.320 60.000 1.90 0.00 0.00 3.35
3843 4806 0.263765 AGCTCCGGGGGTTATACTCA 59.736 55.000 0.00 0.00 0.00 3.41
3844 4807 0.967662 GAGCTCCGGGGGTTATACTC 59.032 60.000 7.85 0.00 0.00 2.59
3845 4808 0.826672 CGAGCTCCGGGGGTTATACT 60.827 60.000 7.85 0.00 33.91 2.12
3846 4809 1.111715 ACGAGCTCCGGGGGTTATAC 61.112 60.000 7.85 0.00 43.93 1.47
3847 4810 1.111116 CACGAGCTCCGGGGGTTATA 61.111 60.000 7.85 0.00 43.93 0.98
3848 4811 2.042230 ACGAGCTCCGGGGGTTAT 60.042 61.111 7.85 0.00 43.93 1.89
3849 4812 3.072468 CACGAGCTCCGGGGGTTA 61.072 66.667 7.85 0.00 43.93 2.85
3855 4818 1.006102 AGACAAACACGAGCTCCGG 60.006 57.895 8.47 0.00 43.93 5.14
3856 4819 0.597637 ACAGACAAACACGAGCTCCG 60.598 55.000 8.47 6.07 45.44 4.63
3930 4893 4.130118 CCTGGCATACAAGATACAACCTC 58.870 47.826 0.00 0.00 0.00 3.85
4143 5107 8.776376 AAAATAAATGAAGCATAAACTGGGTG 57.224 30.769 0.00 0.00 0.00 4.61
4551 5518 4.715534 TCCTTCTATCTCTCCGACTCAT 57.284 45.455 0.00 0.00 0.00 2.90
4701 5668 5.790593 TCAGACATGGTAGTCAGTAAAACC 58.209 41.667 0.00 0.00 40.98 3.27
4803 5772 6.156256 ACCAACAAGAAGGATAGTAGCATACA 59.844 38.462 0.00 0.00 46.26 2.29
4950 5924 4.748277 AGCCTTGCTTCGGTAATTACTA 57.252 40.909 15.05 1.72 33.89 1.82
5019 5993 4.318332 CTGTAACTTTCAGATCACTGGCA 58.682 43.478 0.00 0.00 43.60 4.92
5274 6248 3.949113 GGTGTTCCTAACCAAACAACTCA 59.051 43.478 0.00 0.00 39.46 3.41
5276 6250 4.245251 AGGTGTTCCTAACCAAACAACT 57.755 40.909 0.14 0.14 46.01 3.16
5293 6267 7.962964 TGACTTAAGACAAGATTAACAGGTG 57.037 36.000 10.09 0.00 0.00 4.00
5294 6268 8.837389 GTTTGACTTAAGACAAGATTAACAGGT 58.163 33.333 17.54 0.00 32.04 4.00
5432 6406 5.466393 CACCTATTTGAAAACCAAAGCCAAG 59.534 40.000 0.00 0.00 46.72 3.61
5472 6446 8.839343 GTTTAGTTAGGTTTACTGTGGCTTTAA 58.161 33.333 0.00 0.00 0.00 1.52
5487 6461 5.131475 TGACTTGGGAGTTGTTTAGTTAGGT 59.869 40.000 0.00 0.00 35.88 3.08
5542 7631 4.454847 GTCCCAAGTCCAAGTAGTTTAAGC 59.545 45.833 0.00 0.00 0.00 3.09
5562 7651 9.722184 GGTTTATAAGACCTATTATTCCTGTCC 57.278 37.037 8.66 0.00 34.27 4.02
5882 7997 1.270550 GCTTGGTTGCACATACAGCTT 59.729 47.619 0.00 0.00 0.00 3.74
6014 8148 1.460689 ACAGGTTTGAGGGGTCCGA 60.461 57.895 0.00 0.00 0.00 4.55
6032 8166 2.123208 TCCGGCGGACATATGGGA 60.123 61.111 27.46 0.00 0.00 4.37
6091 8226 0.046552 TTTGGGCCAGGTAGGGGATA 59.953 55.000 6.23 0.00 38.09 2.59
6100 8235 2.755469 CCGGATGTTTGGGCCAGG 60.755 66.667 6.23 0.00 0.00 4.45
6101 8236 2.755469 CCCGGATGTTTGGGCCAG 60.755 66.667 6.23 0.00 38.90 4.85
6131 8268 2.379567 CCACATATGGGATGGGATTGGA 59.620 50.000 6.51 0.00 43.04 3.53
6348 8486 4.742201 GGCAGCGCGAACAGGAGA 62.742 66.667 12.10 0.00 0.00 3.71
6394 8532 4.771127 GACAACGAGGCCAGAACA 57.229 55.556 5.01 0.00 0.00 3.18
6463 9579 2.429767 CGAGCAGCCTGGATCTCCA 61.430 63.158 0.00 0.00 45.30 3.86
6507 9623 0.524862 TACTCCTCAAACTCCGTCGC 59.475 55.000 0.00 0.00 0.00 5.19
6693 9815 2.797278 CCGCCTCCTACGCTTGGAT 61.797 63.158 0.00 0.00 32.56 3.41
6702 9824 1.150992 GCTACTCCTCCGCCTCCTA 59.849 63.158 0.00 0.00 0.00 2.94
6712 9834 1.316266 AGGATGGCCTGCTACTCCT 59.684 57.895 3.32 3.06 44.90 3.69
6763 9885 1.086696 GCCGATAAAGCAGCAGTTCA 58.913 50.000 0.00 0.00 0.00 3.18
6768 9890 1.521457 CCTCGCCGATAAAGCAGCA 60.521 57.895 0.00 0.00 0.00 4.41
6798 9920 2.568612 CGCGAAGAGCTCCTCACA 59.431 61.111 10.93 0.00 45.59 3.58
6815 9937 2.442272 TACAGCGCCTCCTCCTCC 60.442 66.667 2.29 0.00 0.00 4.30
6816 9938 0.825840 ATCTACAGCGCCTCCTCCTC 60.826 60.000 2.29 0.00 0.00 3.71
6817 9939 0.397816 AATCTACAGCGCCTCCTCCT 60.398 55.000 2.29 0.00 0.00 3.69
7037 10194 1.447314 GTGAGCCCCTAAACGTCCG 60.447 63.158 0.00 0.00 0.00 4.79
7077 10234 4.286297 AGTACATGCCTACAAAGAGCAA 57.714 40.909 0.00 0.00 40.46 3.91
7216 10373 7.538575 GCTGTTTGCTCATTATCCTTTTAAGA 58.461 34.615 0.00 0.00 38.95 2.10
7369 10526 1.797635 GTCTCAGCAGCAGTGTCTTTC 59.202 52.381 0.00 0.00 0.00 2.62
7375 10532 3.117171 GCGGTCTCAGCAGCAGTG 61.117 66.667 0.00 0.00 34.19 3.66
7863 11023 3.347216 GCACCATAGACAACCAATGAGT 58.653 45.455 0.00 0.00 0.00 3.41
7882 11042 7.371936 AGTAAATAAAAATTAAGCACCACGCA 58.628 30.769 0.00 0.00 46.13 5.24
7894 11054 9.321532 ACCAGGAAGCCTAAGTAAATAAAAATT 57.678 29.630 0.00 0.00 29.64 1.82
8083 11273 3.898741 AGCCCTAATACTCTAGAGCAACC 59.101 47.826 19.97 0.84 0.00 3.77
8124 11332 3.641906 AGTCTATAGGGTGTCCGATTTGG 59.358 47.826 0.00 0.00 38.33 3.28
8125 11333 4.501571 CCAGTCTATAGGGTGTCCGATTTG 60.502 50.000 0.00 0.00 38.33 2.32
8255 11523 1.886886 AAAGGCGAAAGTTTAGGCGA 58.113 45.000 14.92 0.00 35.47 5.54
8283 11551 7.600960 TGATATGTTGTTATTTTGAGCTTGCA 58.399 30.769 0.00 0.00 0.00 4.08
8440 11725 0.836606 TTTGACTGAGCACCTGTGGA 59.163 50.000 0.00 0.00 0.00 4.02
8444 11729 2.354259 GGAGATTTGACTGAGCACCTG 58.646 52.381 0.00 0.00 0.00 4.00
8447 11732 2.746362 CAAGGGAGATTTGACTGAGCAC 59.254 50.000 0.00 0.00 0.00 4.40
8454 11739 4.389077 CACGTAACTCAAGGGAGATTTGAC 59.611 45.833 0.00 0.00 44.26 3.18
8463 11748 2.028476 TCATGGTCACGTAACTCAAGGG 60.028 50.000 0.00 0.00 0.00 3.95
8475 11760 6.932356 ATACATCAACAGATTCATGGTCAC 57.068 37.500 0.00 0.00 0.00 3.67
8479 11764 8.245491 TGTTCAAATACATCAACAGATTCATGG 58.755 33.333 0.00 0.00 0.00 3.66
8480 11765 9.628746 TTGTTCAAATACATCAACAGATTCATG 57.371 29.630 0.00 0.00 30.66 3.07
8487 11783 8.509690 AGTGAGATTGTTCAAATACATCAACAG 58.490 33.333 0.00 0.00 30.66 3.16
8540 11836 3.912496 ACATGGATGATCCTGTCGAAA 57.088 42.857 13.44 0.00 37.46 3.46
8543 11839 3.801698 AGAAACATGGATGATCCTGTCG 58.198 45.455 13.44 1.07 37.46 4.35
8580 11876 1.288188 TGAGGGTGAAGATGATGCCA 58.712 50.000 0.00 0.00 0.00 4.92
8647 11943 4.842531 TTTGGATGCAGAGACCTTATGA 57.157 40.909 0.00 0.00 0.00 2.15
8666 11962 3.880490 TGTTCGTGACCTGCTAAACATTT 59.120 39.130 0.00 0.00 0.00 2.32
8702 11999 1.382522 GGCATTTCGAATGCTCCAGA 58.617 50.000 22.80 0.00 44.02 3.86
8703 12000 0.383231 GGGCATTTCGAATGCTCCAG 59.617 55.000 22.80 3.27 44.02 3.86
8711 12008 2.559698 TGTGAAGAGGGCATTTCGAA 57.440 45.000 0.00 0.00 0.00 3.71
8714 12011 2.352960 GACGATGTGAAGAGGGCATTTC 59.647 50.000 0.00 0.00 0.00 2.17
8726 12023 3.010420 CTCACAGGTAGAGACGATGTGA 58.990 50.000 6.21 6.21 44.37 3.58
8752 12049 5.569355 TCATCAGCTATCTTGGTCCAAAAA 58.431 37.500 5.64 0.00 0.00 1.94
8753 12050 5.178096 TCATCAGCTATCTTGGTCCAAAA 57.822 39.130 5.64 0.00 0.00 2.44
8754 12051 4.842531 TCATCAGCTATCTTGGTCCAAA 57.157 40.909 5.64 0.00 0.00 3.28
8755 12052 4.409901 TCATCATCAGCTATCTTGGTCCAA 59.590 41.667 3.76 3.76 0.00 3.53
8756 12053 3.969312 TCATCATCAGCTATCTTGGTCCA 59.031 43.478 0.00 0.00 0.00 4.02
8757 12054 4.613925 TCATCATCAGCTATCTTGGTCC 57.386 45.455 0.00 0.00 0.00 4.46
8758 12055 4.936411 CCATCATCATCAGCTATCTTGGTC 59.064 45.833 0.00 0.00 0.00 4.02
8759 12056 4.596212 TCCATCATCATCAGCTATCTTGGT 59.404 41.667 0.00 0.00 0.00 3.67
8760 12057 5.161943 TCCATCATCATCAGCTATCTTGG 57.838 43.478 0.00 0.00 0.00 3.61
8761 12058 7.382759 CGATATCCATCATCATCAGCTATCTTG 59.617 40.741 0.00 0.00 0.00 3.02
8762 12059 7.069702 ACGATATCCATCATCATCAGCTATCTT 59.930 37.037 0.00 0.00 0.00 2.40
8763 12060 6.550481 ACGATATCCATCATCATCAGCTATCT 59.450 38.462 0.00 0.00 0.00 1.98
8764 12061 6.747125 ACGATATCCATCATCATCAGCTATC 58.253 40.000 0.00 0.00 0.00 2.08
8765 12062 6.323225 TGACGATATCCATCATCATCAGCTAT 59.677 38.462 0.00 0.00 28.75 2.97
8766 12063 5.653769 TGACGATATCCATCATCATCAGCTA 59.346 40.000 0.00 0.00 28.75 3.32
8767 12064 4.465305 TGACGATATCCATCATCATCAGCT 59.535 41.667 0.00 0.00 28.75 4.24
8768 12065 4.752146 TGACGATATCCATCATCATCAGC 58.248 43.478 0.00 0.00 28.75 4.26
8769 12066 6.205101 TCTGACGATATCCATCATCATCAG 57.795 41.667 5.10 2.81 33.22 2.90
8770 12067 6.786967 ATCTGACGATATCCATCATCATCA 57.213 37.500 5.10 0.00 33.22 3.07
8771 12068 7.939782 ACTATCTGACGATATCCATCATCATC 58.060 38.462 5.10 0.00 33.22 2.92
8772 12069 7.894753 ACTATCTGACGATATCCATCATCAT 57.105 36.000 5.10 4.18 33.22 2.45
8773 12070 8.049721 ACTACTATCTGACGATATCCATCATCA 58.950 37.037 5.10 0.00 32.71 3.07
8774 12071 8.445275 ACTACTATCTGACGATATCCATCATC 57.555 38.462 5.10 0.00 31.98 2.92
8775 12072 7.500892 GGACTACTATCTGACGATATCCATCAT 59.499 40.741 5.10 0.00 31.92 2.45
8776 12073 6.824196 GGACTACTATCTGACGATATCCATCA 59.176 42.308 0.00 0.85 31.92 3.07
8777 12074 6.824196 TGGACTACTATCTGACGATATCCATC 59.176 42.308 0.00 0.00 34.76 3.51
8778 12075 6.722328 TGGACTACTATCTGACGATATCCAT 58.278 40.000 0.00 0.00 34.76 3.41
8779 12076 6.123045 TGGACTACTATCTGACGATATCCA 57.877 41.667 0.00 0.00 36.18 3.41
8780 12077 6.600032 ACATGGACTACTATCTGACGATATCC 59.400 42.308 0.00 0.00 32.11 2.59
8781 12078 7.618502 ACATGGACTACTATCTGACGATATC 57.381 40.000 0.00 0.00 31.98 1.63
8782 12079 7.448777 ACAACATGGACTACTATCTGACGATAT 59.551 37.037 0.00 0.00 31.98 1.63
8783 12080 6.771267 ACAACATGGACTACTATCTGACGATA 59.229 38.462 0.00 0.00 0.00 2.92
8784 12081 5.594725 ACAACATGGACTACTATCTGACGAT 59.405 40.000 0.00 0.00 0.00 3.73
8785 12082 4.948004 ACAACATGGACTACTATCTGACGA 59.052 41.667 0.00 0.00 0.00 4.20
8786 12083 5.250235 ACAACATGGACTACTATCTGACG 57.750 43.478 0.00 0.00 0.00 4.35
8787 12084 8.414003 TGAATACAACATGGACTACTATCTGAC 58.586 37.037 0.00 0.00 0.00 3.51
8788 12085 8.533569 TGAATACAACATGGACTACTATCTGA 57.466 34.615 0.00 0.00 0.00 3.27
8789 12086 9.201127 CATGAATACAACATGGACTACTATCTG 57.799 37.037 0.00 0.00 40.66 2.90
8790 12087 8.928448 ACATGAATACAACATGGACTACTATCT 58.072 33.333 0.00 0.00 46.19 1.98
8791 12088 9.197694 GACATGAATACAACATGGACTACTATC 57.802 37.037 0.00 0.00 46.19 2.08
8792 12089 8.150945 GGACATGAATACAACATGGACTACTAT 58.849 37.037 0.00 0.00 46.19 2.12
8793 12090 7.125053 TGGACATGAATACAACATGGACTACTA 59.875 37.037 0.00 0.00 46.19 1.82
8794 12091 6.070251 TGGACATGAATACAACATGGACTACT 60.070 38.462 0.00 0.00 46.19 2.57
8795 12092 6.112734 TGGACATGAATACAACATGGACTAC 58.887 40.000 0.00 0.00 46.19 2.73
8796 12093 6.306643 TGGACATGAATACAACATGGACTA 57.693 37.500 0.00 0.00 46.19 2.59
8797 12094 5.178096 TGGACATGAATACAACATGGACT 57.822 39.130 0.00 0.00 46.19 3.85
8798 12095 6.095300 TCAATGGACATGAATACAACATGGAC 59.905 38.462 0.00 0.00 46.19 4.02
8799 12096 6.186234 TCAATGGACATGAATACAACATGGA 58.814 36.000 0.00 0.00 46.19 3.41
8800 12097 6.453926 TCAATGGACATGAATACAACATGG 57.546 37.500 0.00 0.00 46.19 3.66
8801 12098 8.843262 ACTATCAATGGACATGAATACAACATG 58.157 33.333 0.00 0.00 46.96 3.21
8802 12099 8.985315 ACTATCAATGGACATGAATACAACAT 57.015 30.769 0.00 0.00 0.00 2.71
8803 12100 8.806429 AACTATCAATGGACATGAATACAACA 57.194 30.769 0.00 0.00 0.00 3.33
8814 12111 9.429109 TCCTTGTAGTATAACTATCAATGGACA 57.571 33.333 0.00 0.00 32.65 4.02
8815 12112 9.915629 CTCCTTGTAGTATAACTATCAATGGAC 57.084 37.037 0.00 0.00 32.65 4.02
8816 12113 9.090103 CCTCCTTGTAGTATAACTATCAATGGA 57.910 37.037 0.00 0.00 32.65 3.41
8817 12114 8.871125 ACCTCCTTGTAGTATAACTATCAATGG 58.129 37.037 0.00 0.00 32.65 3.16
8820 12117 9.710818 AGAACCTCCTTGTAGTATAACTATCAA 57.289 33.333 0.00 0.00 32.65 2.57
8821 12118 9.710818 AAGAACCTCCTTGTAGTATAACTATCA 57.289 33.333 0.00 0.00 32.65 2.15
8824 12121 9.765295 AGAAAGAACCTCCTTGTAGTATAACTA 57.235 33.333 0.00 0.00 0.00 2.24
8825 12122 8.532819 CAGAAAGAACCTCCTTGTAGTATAACT 58.467 37.037 0.00 0.00 0.00 2.24
8826 12123 7.764901 CCAGAAAGAACCTCCTTGTAGTATAAC 59.235 40.741 0.00 0.00 0.00 1.89
8827 12124 7.456902 ACCAGAAAGAACCTCCTTGTAGTATAA 59.543 37.037 0.00 0.00 0.00 0.98
8828 12125 6.958192 ACCAGAAAGAACCTCCTTGTAGTATA 59.042 38.462 0.00 0.00 0.00 1.47
8829 12126 5.785940 ACCAGAAAGAACCTCCTTGTAGTAT 59.214 40.000 0.00 0.00 0.00 2.12
8830 12127 5.011738 CACCAGAAAGAACCTCCTTGTAGTA 59.988 44.000 0.00 0.00 0.00 1.82
8831 12128 3.974642 ACCAGAAAGAACCTCCTTGTAGT 59.025 43.478 0.00 0.00 0.00 2.73
8832 12129 4.040461 TCACCAGAAAGAACCTCCTTGTAG 59.960 45.833 0.00 0.00 0.00 2.74
8833 12130 3.971305 TCACCAGAAAGAACCTCCTTGTA 59.029 43.478 0.00 0.00 0.00 2.41
8834 12131 2.777692 TCACCAGAAAGAACCTCCTTGT 59.222 45.455 0.00 0.00 0.00 3.16
8835 12132 3.071602 TCTCACCAGAAAGAACCTCCTTG 59.928 47.826 0.00 0.00 0.00 3.61
8836 12133 3.318313 TCTCACCAGAAAGAACCTCCTT 58.682 45.455 0.00 0.00 0.00 3.36
8837 12134 2.977808 TCTCACCAGAAAGAACCTCCT 58.022 47.619 0.00 0.00 0.00 3.69
8838 12135 3.369997 GGATCTCACCAGAAAGAACCTCC 60.370 52.174 0.00 0.00 33.08 4.30
8839 12136 3.517500 AGGATCTCACCAGAAAGAACCTC 59.482 47.826 0.00 0.00 39.79 3.85
8840 12137 3.525862 AGGATCTCACCAGAAAGAACCT 58.474 45.455 0.00 0.00 39.29 3.50
8841 12138 3.990959 AGGATCTCACCAGAAAGAACC 57.009 47.619 0.00 0.00 35.33 3.62
8842 12139 6.410540 ACAATAGGATCTCACCAGAAAGAAC 58.589 40.000 0.00 0.00 30.24 3.01
8843 12140 6.627087 ACAATAGGATCTCACCAGAAAGAA 57.373 37.500 0.00 0.00 30.24 2.52
8844 12141 7.733773 TTACAATAGGATCTCACCAGAAAGA 57.266 36.000 0.00 0.00 30.24 2.52
8845 12142 7.041508 GCATTACAATAGGATCTCACCAGAAAG 60.042 40.741 0.00 0.00 30.24 2.62
8846 12143 6.767902 GCATTACAATAGGATCTCACCAGAAA 59.232 38.462 0.00 0.00 30.24 2.52
8847 12144 6.291377 GCATTACAATAGGATCTCACCAGAA 58.709 40.000 0.00 0.00 30.24 3.02
8848 12145 5.509670 CGCATTACAATAGGATCTCACCAGA 60.510 44.000 0.00 0.00 0.00 3.86
8849 12146 4.687948 CGCATTACAATAGGATCTCACCAG 59.312 45.833 0.00 0.00 0.00 4.00
8850 12147 4.343814 TCGCATTACAATAGGATCTCACCA 59.656 41.667 0.00 0.00 0.00 4.17
8851 12148 4.686554 GTCGCATTACAATAGGATCTCACC 59.313 45.833 0.00 0.00 0.00 4.02
8852 12149 4.383052 CGTCGCATTACAATAGGATCTCAC 59.617 45.833 0.00 0.00 0.00 3.51
8853 12150 4.037565 ACGTCGCATTACAATAGGATCTCA 59.962 41.667 0.00 0.00 0.00 3.27
8854 12151 4.383052 CACGTCGCATTACAATAGGATCTC 59.617 45.833 0.00 0.00 0.00 2.75
8855 12152 4.299155 CACGTCGCATTACAATAGGATCT 58.701 43.478 0.00 0.00 0.00 2.75
8856 12153 3.120991 GCACGTCGCATTACAATAGGATC 60.121 47.826 5.30 0.00 41.79 3.36
8857 12154 2.800544 GCACGTCGCATTACAATAGGAT 59.199 45.455 5.30 0.00 41.79 3.24
8858 12155 2.198406 GCACGTCGCATTACAATAGGA 58.802 47.619 5.30 0.00 41.79 2.94
8859 12156 2.645628 GCACGTCGCATTACAATAGG 57.354 50.000 5.30 0.00 41.79 2.57
8883 12180 8.814931 AGGAATGATTAGATCTCTGATTACCAG 58.185 37.037 0.00 0.00 44.27 4.00
8899 12218 6.708885 AGAAGGATGCCATAGGAATGATTA 57.291 37.500 0.00 0.00 34.84 1.75
8904 12223 5.133322 TCTTGAAGAAGGATGCCATAGGAAT 59.867 40.000 0.00 0.00 0.00 3.01
8933 12252 3.427243 CGTCTCGTCCTTTGATGACTAC 58.573 50.000 0.00 0.00 33.03 2.73
8947 12266 0.179134 GCCTCTAACATGCGTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
8954 12273 1.789464 CTTCGATCGCCTCTAACATGC 59.211 52.381 11.09 0.00 0.00 4.06
8959 12278 4.386867 AAATGTCTTCGATCGCCTCTAA 57.613 40.909 11.09 0.00 0.00 2.10
8990 12309 2.814336 CCCACTTTTCGCTAGCTCTTTT 59.186 45.455 13.93 0.00 0.00 2.27
9013 12332 1.153046 TAATGGGCGGCTACCTTGC 60.153 57.895 9.56 0.00 0.00 4.01
9014 12333 1.166531 GCTAATGGGCGGCTACCTTG 61.167 60.000 9.56 0.00 0.00 3.61
9015 12334 1.148498 GCTAATGGGCGGCTACCTT 59.852 57.895 9.56 0.00 0.00 3.50
9016 12335 2.829592 GCTAATGGGCGGCTACCT 59.170 61.111 9.56 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.