Multiple sequence alignment - TraesCS4B01G164200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G164200 chr4B 100.000 2417 0 0 1 2417 339474505 339476921 0.000000e+00 4464.0
1 TraesCS4B01G164200 chr6A 83.481 2149 332 8 282 2417 39434986 39432848 0.000000e+00 1980.0
2 TraesCS4B01G164200 chr6A 80.552 2427 438 16 8 2417 2158280 2160689 0.000000e+00 1836.0
3 TraesCS4B01G164200 chr1B 81.448 2404 402 31 8 2383 480459254 480461641 0.000000e+00 1929.0
4 TraesCS4B01G164200 chr1B 80.853 2392 429 26 8 2383 453489568 453491946 0.000000e+00 1853.0
5 TraesCS4B01G164200 chr1B 79.771 2442 445 25 1 2417 379625353 379622936 0.000000e+00 1727.0
6 TraesCS4B01G164200 chr1B 75.000 160 29 4 322 471 115446188 115446030 2.010000e-06 63.9
7 TraesCS4B01G164200 chr5B 81.153 2255 385 29 170 2395 239256319 239254076 0.000000e+00 1773.0
8 TraesCS4B01G164200 chr5B 86.193 1014 138 2 562 1573 356217473 356218486 0.000000e+00 1096.0
9 TraesCS4B01G164200 chr5B 88.104 849 99 2 1569 2417 356227011 356227857 0.000000e+00 1007.0
10 TraesCS4B01G164200 chr1A 80.379 2324 413 30 8 2303 527675941 527678249 0.000000e+00 1725.0
11 TraesCS4B01G164200 chr3B 78.770 2374 435 44 8 2345 495715407 495713067 0.000000e+00 1528.0
12 TraesCS4B01G164200 chr2D 84.498 329 45 2 9 331 296706904 296707232 1.080000e-83 320.0
13 TraesCS4B01G164200 chr6B 78.689 122 26 0 1234 1355 163803097 163802976 5.540000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G164200 chr4B 339474505 339476921 2416 False 4464 4464 100.000 1 2417 1 chr4B.!!$F1 2416
1 TraesCS4B01G164200 chr6A 39432848 39434986 2138 True 1980 1980 83.481 282 2417 1 chr6A.!!$R1 2135
2 TraesCS4B01G164200 chr6A 2158280 2160689 2409 False 1836 1836 80.552 8 2417 1 chr6A.!!$F1 2409
3 TraesCS4B01G164200 chr1B 480459254 480461641 2387 False 1929 1929 81.448 8 2383 1 chr1B.!!$F2 2375
4 TraesCS4B01G164200 chr1B 453489568 453491946 2378 False 1853 1853 80.853 8 2383 1 chr1B.!!$F1 2375
5 TraesCS4B01G164200 chr1B 379622936 379625353 2417 True 1727 1727 79.771 1 2417 1 chr1B.!!$R2 2416
6 TraesCS4B01G164200 chr5B 239254076 239256319 2243 True 1773 1773 81.153 170 2395 1 chr5B.!!$R1 2225
7 TraesCS4B01G164200 chr5B 356217473 356218486 1013 False 1096 1096 86.193 562 1573 1 chr5B.!!$F1 1011
8 TraesCS4B01G164200 chr5B 356227011 356227857 846 False 1007 1007 88.104 1569 2417 1 chr5B.!!$F2 848
9 TraesCS4B01G164200 chr1A 527675941 527678249 2308 False 1725 1725 80.379 8 2303 1 chr1A.!!$F1 2295
10 TraesCS4B01G164200 chr3B 495713067 495715407 2340 True 1528 1528 78.770 8 2345 1 chr3B.!!$R1 2337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 513 0.833287 CGACCCTGTTGGATCCATCT 59.167 55.0 17.06 0.0 38.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 2394 0.035317 CTGTAGAGTTGGCCAGCACA 59.965 55.0 22.64 15.72 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.624838 CCACTTTGTGCATCAGGAGTTT 59.375 45.455 0.00 0.00 31.34 2.66
38 39 1.527311 GTTTCTTCTCCACGTCTGCAC 59.473 52.381 0.00 0.00 0.00 4.57
66 67 1.078143 GAAGATGCCGCTCCACCTT 60.078 57.895 0.00 0.00 0.00 3.50
78 79 2.487265 GCTCCACCTTTGGTCTCTTGAA 60.487 50.000 0.00 0.00 44.35 2.69
87 88 4.082523 TCTCTTGAAGGGGCGGCG 62.083 66.667 0.51 0.51 0.00 6.46
130 131 2.046988 TCGACCGCCTCGACAGTA 60.047 61.111 0.00 0.00 46.75 2.74
134 135 1.303888 ACCGCCTCGACAGTAGGAA 60.304 57.895 0.00 0.00 36.08 3.36
144 145 1.177256 ACAGTAGGAACCACGAGCGT 61.177 55.000 0.00 0.00 0.00 5.07
192 193 3.181530 TGGGTGTGGGATGTGGCA 61.182 61.111 0.00 0.00 0.00 4.92
358 372 4.057428 GACTGGTCACCGCGCTCT 62.057 66.667 5.56 0.00 0.00 4.09
400 414 1.118965 TGCCCTTGTCGGAGTCTGAA 61.119 55.000 2.39 0.00 33.16 3.02
442 456 4.402528 TGGCCGGGAACATGGACG 62.403 66.667 2.18 0.00 36.07 4.79
492 506 3.246112 CCACCCGACCCTGTTGGA 61.246 66.667 1.92 0.00 39.36 3.53
499 513 0.833287 CGACCCTGTTGGATCCATCT 59.167 55.000 17.06 0.00 38.00 2.90
871 891 1.812922 GCTGCCTCGTGTGGATGAG 60.813 63.158 0.00 0.00 35.26 2.90
903 923 1.667154 CTCGAGGAGTCCATCGCCAA 61.667 60.000 19.94 7.87 38.50 4.52
993 1014 1.603842 CCAGACCAGCCTGCATGTA 59.396 57.895 0.00 0.00 32.97 2.29
996 1017 0.911525 AGACCAGCCTGCATGTAGGT 60.912 55.000 27.95 11.62 40.11 3.08
1007 1028 1.521457 ATGTAGGTGCCATGACGCG 60.521 57.895 3.53 3.53 0.00 6.01
1020 1041 0.670239 TGACGCGACAAGTCATGCAT 60.670 50.000 15.93 0.00 42.91 3.96
1036 1057 1.730501 GCATCTGCAGCTCAACAGTA 58.269 50.000 9.47 0.00 41.59 2.74
1072 1099 1.429825 CGCCTCTTCGTCGATGTCT 59.570 57.895 4.21 0.00 0.00 3.41
1083 1110 2.786495 CGATGTCTCCCCTCCCGTG 61.786 68.421 0.00 0.00 0.00 4.94
1095 1122 2.835431 CCCGTGATCTCCGCTCCT 60.835 66.667 0.00 0.00 0.00 3.69
1100 1127 0.537188 GTGATCTCCGCTCCTCCAAA 59.463 55.000 0.00 0.00 0.00 3.28
1125 1155 3.551496 CTCCGCTGCACCTCCCAAA 62.551 63.158 0.00 0.00 0.00 3.28
1132 1162 0.482446 TGCACCTCCCAAAACCAGAT 59.518 50.000 0.00 0.00 0.00 2.90
1136 1166 2.003072 ACCTCCCAAAACCAGATCCAT 58.997 47.619 0.00 0.00 0.00 3.41
1145 1175 0.030297 ACCAGATCCATCTCTGCCCT 60.030 55.000 0.00 0.00 41.12 5.19
1232 1262 4.373116 GGTGGTCAAGCGCCTCGA 62.373 66.667 2.29 0.00 0.00 4.04
1259 1289 1.916181 GGGACCCAAGGAGAAGATGAA 59.084 52.381 5.33 0.00 0.00 2.57
1268 1298 4.313020 AGGAGAAGATGAATGCAAAGGT 57.687 40.909 0.00 0.00 0.00 3.50
1270 1300 3.760684 GGAGAAGATGAATGCAAAGGTGT 59.239 43.478 0.00 0.00 0.00 4.16
1281 1311 2.225467 GCAAAGGTGTCTGAAGCTCTT 58.775 47.619 0.00 0.00 0.00 2.85
1285 1315 5.048434 GCAAAGGTGTCTGAAGCTCTTATTT 60.048 40.000 0.00 0.00 0.00 1.40
1305 1335 2.202388 CGTTTCGACGAGCCGCTA 60.202 61.111 0.00 0.00 34.64 4.26
1307 1337 1.138047 CGTTTCGACGAGCCGCTAAT 61.138 55.000 0.00 0.00 34.64 1.73
1341 1371 0.745486 CCATCATCGCCAAGCTCACA 60.745 55.000 0.00 0.00 0.00 3.58
1342 1372 1.306148 CATCATCGCCAAGCTCACAT 58.694 50.000 0.00 0.00 0.00 3.21
1355 1385 4.082523 CACATGCCTCGACCCGGT 62.083 66.667 0.00 0.00 0.00 5.28
1356 1386 2.363276 ACATGCCTCGACCCGGTA 60.363 61.111 0.00 0.00 0.00 4.02
1371 1401 2.190578 GTAGCCCTCCGCATTGCT 59.809 61.111 7.12 0.00 41.38 3.91
1375 1405 2.825836 CCCTCCGCATTGCTGGTC 60.826 66.667 15.72 0.00 0.00 4.02
1472 1509 0.468771 GCAGGGATTGGCATTAGGCT 60.469 55.000 0.00 0.00 44.01 4.58
1508 1545 6.321435 AGGTTTCATGATCGATGACTGTAGTA 59.679 38.462 0.54 0.00 41.02 1.82
1515 1552 5.748630 TGATCGATGACTGTAGTATTTGTGC 59.251 40.000 0.54 0.00 0.00 4.57
1556 1594 0.605319 CGCCAGAGTAGTTTTGGGCA 60.605 55.000 0.00 0.00 41.41 5.36
1611 1649 2.228138 TGGTGTACTTGTGTTCGTCC 57.772 50.000 0.00 0.00 0.00 4.79
1630 1668 4.024556 CGTCCCAGATCAATAGAATGTTGC 60.025 45.833 0.00 0.00 0.00 4.17
1632 1670 5.591877 GTCCCAGATCAATAGAATGTTGCTT 59.408 40.000 0.00 0.00 0.00 3.91
1667 1705 8.650143 AAAACCATTGTTCCATATGAGTAACT 57.350 30.769 3.65 0.00 32.15 2.24
1708 1746 1.003580 TGGAATGTGAGAGGGCTGAAC 59.996 52.381 0.00 0.00 0.00 3.18
1713 1751 1.537397 TGAGAGGGCTGAACTGGCT 60.537 57.895 5.43 0.00 0.00 4.75
1743 1781 2.047844 AGCTGTGCGCGAGATTGT 60.048 55.556 12.10 0.00 45.59 2.71
1757 1795 1.137872 AGATTGTGGAGGCTCATCGAC 59.862 52.381 17.69 7.48 0.00 4.20
1808 1846 4.096003 AATCCTGGACACCCGCCG 62.096 66.667 0.00 0.00 34.29 6.46
1825 1863 1.672356 CGTTGTTCAGGAGCTGGGG 60.672 63.158 0.00 0.00 31.51 4.96
1847 1885 1.748122 CGCAAGCTTGAGGGATGCT 60.748 57.895 30.39 0.00 36.64 3.79
1862 1900 0.829333 ATGCTCTGTCCTGCCTACAG 59.171 55.000 4.31 4.31 44.66 2.74
1889 1927 3.168528 GGGGAGGAGCGGCCATTA 61.169 66.667 2.24 0.00 40.02 1.90
1988 2026 1.557269 GGGCTGCTCCTCTTTCTGGA 61.557 60.000 0.00 0.00 34.39 3.86
1997 2035 3.948473 CTCCTCTTTCTGGATGACGACTA 59.052 47.826 0.00 0.00 32.56 2.59
2008 2046 4.235360 GGATGACGACTATTTATGGACCG 58.765 47.826 0.00 0.00 0.00 4.79
2014 2052 3.391049 GACTATTTATGGACCGGCTGAC 58.609 50.000 0.00 0.00 0.00 3.51
2065 2103 2.987547 GCACATGCTGCACCACCT 60.988 61.111 3.57 0.00 46.29 4.00
2086 2124 3.909662 CGGGAGCCTTGGTTGATG 58.090 61.111 0.00 0.00 0.00 3.07
2091 2129 2.621407 GGGAGCCTTGGTTGATGAATGA 60.621 50.000 0.00 0.00 0.00 2.57
2093 2131 3.703052 GGAGCCTTGGTTGATGAATGAAT 59.297 43.478 0.00 0.00 0.00 2.57
2145 2183 7.706179 GGACAAGAACAATCTGAATTTGAACAA 59.294 33.333 0.00 0.00 35.59 2.83
2191 2229 2.231964 AGCTATTGACACGACGGGTTTA 59.768 45.455 3.25 0.00 0.00 2.01
2217 2255 7.499895 ACGTGAGGTAAAGTGGAAAAATAGAAA 59.500 33.333 0.00 0.00 0.00 2.52
2239 2277 0.103390 TCACTTGGACAAACGAGCGA 59.897 50.000 0.00 0.00 0.00 4.93
2242 2280 1.148310 CTTGGACAAACGAGCGACAT 58.852 50.000 0.00 0.00 0.00 3.06
2245 2283 1.337728 TGGACAAACGAGCGACATGAT 60.338 47.619 0.00 0.00 0.00 2.45
2272 2310 3.753294 ATGGTATCCATCGACAAGGTC 57.247 47.619 0.00 0.00 40.74 3.85
2284 2322 2.345641 CGACAAGGTCTTCTGTAATGCG 59.654 50.000 0.00 0.00 0.00 4.73
2295 2333 2.172505 TCTGTAATGCGGAATGGGATGT 59.827 45.455 0.00 0.00 0.00 3.06
2304 2342 2.171448 CGGAATGGGATGTCCTCTTTCT 59.829 50.000 0.00 0.00 36.20 2.52
2311 2349 5.982391 TGGGATGTCCTCTTTCTATCCTAT 58.018 41.667 0.00 0.00 37.90 2.57
2356 2394 3.376935 CTCGGATCACTGCCCGCTT 62.377 63.158 0.00 0.00 44.96 4.68
2377 2415 4.625800 CTGGCCAACTCTACAGCC 57.374 61.111 7.01 0.00 45.96 4.85
2396 2434 0.681175 CCCAAAAAGGAGGCCTGTTG 59.319 55.000 12.00 6.36 41.22 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.666011 GGTGCAGACGTGGAGAAGA 59.334 57.895 0.00 0.00 0.00 2.87
66 67 1.374947 CGCCCCTTCAAGAGACCAA 59.625 57.895 0.00 0.00 0.00 3.67
87 88 1.216710 CTTGTCGCTGAGGACCTCC 59.783 63.158 19.11 3.36 36.07 4.30
96 97 0.025898 CGATGATGCACTTGTCGCTG 59.974 55.000 0.00 0.00 0.00 5.18
97 98 0.108662 TCGATGATGCACTTGTCGCT 60.109 50.000 0.00 0.00 32.74 4.93
144 145 0.178992 CAAAGGTCTTCAGGTGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
151 152 2.029649 CCCAACATGCAAAGGTCTTCAG 60.030 50.000 0.00 0.00 0.00 3.02
192 193 1.607612 GTGTCGGGTGGGGATGAAT 59.392 57.895 0.00 0.00 0.00 2.57
302 307 2.202743 GAGCATGTCGTGGCGCTA 60.203 61.111 7.64 0.00 34.12 4.26
387 401 0.889638 AGCGTCTTCAGACTCCGACA 60.890 55.000 5.44 0.00 42.66 4.35
473 487 4.263572 CAACAGGGTCGGGTGGCA 62.264 66.667 0.00 0.00 0.00 4.92
482 496 0.921896 CCAGATGGATCCAACAGGGT 59.078 55.000 20.67 0.00 35.97 4.34
488 502 1.153107 CGCAGCCAGATGGATCCAA 60.153 57.895 20.67 1.96 37.39 3.53
492 506 3.769369 CTGCCGCAGCCAGATGGAT 62.769 63.158 7.61 0.00 38.69 3.41
634 654 2.125391 CGGCTTGAGCTAGCAGCA 60.125 61.111 22.64 15.23 45.56 4.41
852 872 2.046988 CATCCACACGAGGCAGCA 60.047 61.111 0.00 0.00 0.00 4.41
889 909 3.195698 GCGTTGGCGATGGACTCC 61.196 66.667 0.00 0.00 41.33 3.85
993 1014 3.529341 TTGTCGCGTCATGGCACCT 62.529 57.895 6.92 0.00 0.00 4.00
996 1017 2.027073 GACTTGTCGCGTCATGGCA 61.027 57.895 17.72 0.00 0.00 4.92
1020 1041 1.047801 TGGTACTGTTGAGCTGCAGA 58.952 50.000 20.43 0.00 36.62 4.26
1072 1099 2.282446 GGAGATCACGGGAGGGGA 59.718 66.667 0.00 0.00 0.00 4.81
1083 1110 0.531753 GCTTTGGAGGAGCGGAGATC 60.532 60.000 0.00 0.00 45.39 2.75
1119 1149 3.054139 CAGAGATGGATCTGGTTTTGGGA 60.054 47.826 0.00 0.00 42.52 4.37
1125 1155 0.842635 GGGCAGAGATGGATCTGGTT 59.157 55.000 5.92 0.00 45.66 3.67
1132 1162 1.412217 CCTGACTAGGGCAGAGATGGA 60.412 57.143 14.37 0.00 40.63 3.41
1145 1175 3.118454 GCGCGCTTTGCCTGACTA 61.118 61.111 26.67 0.00 42.08 2.59
1232 1262 1.852157 TCCTTGGGTCCCAGCATGT 60.852 57.895 11.40 0.00 33.81 3.21
1259 1289 2.157738 GAGCTTCAGACACCTTTGCAT 58.842 47.619 0.00 0.00 0.00 3.96
1268 1298 3.002791 CGGCAAATAAGAGCTTCAGACA 58.997 45.455 0.00 0.00 0.00 3.41
1270 1300 3.334583 ACGGCAAATAAGAGCTTCAGA 57.665 42.857 0.00 0.00 0.00 3.27
1305 1335 4.042884 TGATGGAGATGTCCTCTTCCATT 58.957 43.478 10.72 0.00 44.30 3.16
1307 1337 3.120468 TGATGGAGATGTCCTCTTCCA 57.880 47.619 10.72 0.00 44.30 3.53
1341 1371 3.537874 GCTACCGGGTCGAGGCAT 61.538 66.667 6.32 0.00 0.00 4.40
1355 1385 2.190313 CAGCAATGCGGAGGGCTA 59.810 61.111 0.00 0.00 44.05 3.93
1356 1386 4.809496 CCAGCAATGCGGAGGGCT 62.809 66.667 7.00 0.00 44.05 5.19
1472 1509 7.102993 TCGATCATGAAACCTAACTCAAATCA 58.897 34.615 0.00 0.00 0.00 2.57
1508 1545 0.323725 CCCACAGCCCTAGCACAAAT 60.324 55.000 0.00 0.00 43.56 2.32
1515 1552 0.257039 AAGCAATCCCACAGCCCTAG 59.743 55.000 0.00 0.00 0.00 3.02
1556 1594 1.003355 CGCCAGAGACCACCAACAT 60.003 57.895 0.00 0.00 0.00 2.71
1611 1649 6.726230 CAGAAGCAACATTCTATTGATCTGG 58.274 40.000 10.62 0.00 37.43 3.86
1630 1668 3.571401 ACAATGGTTTTCTCCAGCAGAAG 59.429 43.478 0.00 0.00 42.37 2.85
1632 1670 3.228188 ACAATGGTTTTCTCCAGCAGA 57.772 42.857 0.00 0.00 41.05 4.26
1667 1705 3.213206 ACTCAAGATTGCACCAGTTGA 57.787 42.857 0.00 0.00 0.00 3.18
1743 1781 1.900351 CTTGGTCGATGAGCCTCCA 59.100 57.895 0.00 0.00 0.00 3.86
1808 1846 1.303643 CCCCCAGCTCCTGAACAAC 60.304 63.158 0.00 0.00 32.44 3.32
1825 1863 2.543067 ATCCCTCAAGCTTGCGACCC 62.543 60.000 21.99 0.00 0.00 4.46
1847 1885 0.904865 CCCACTGTAGGCAGGACAGA 60.905 60.000 17.68 0.00 46.01 3.41
1889 1927 4.910304 ACTAATGACAGCCTTATCCCAGAT 59.090 41.667 0.00 0.00 0.00 2.90
1973 2011 1.205655 CGTCATCCAGAAAGAGGAGCA 59.794 52.381 0.00 0.00 38.83 4.26
1974 2012 1.478510 TCGTCATCCAGAAAGAGGAGC 59.521 52.381 0.00 0.00 38.83 4.70
1988 2026 3.554337 GCCGGTCCATAAATAGTCGTCAT 60.554 47.826 1.90 0.00 0.00 3.06
1997 2035 0.828022 TCGTCAGCCGGTCCATAAAT 59.172 50.000 1.90 0.00 37.11 1.40
2008 2046 2.839324 CTTTGCGTGCATCGTCAGCC 62.839 60.000 9.76 0.00 42.13 4.85
2014 2052 2.571611 GCGTCTTTGCGTGCATCG 60.572 61.111 0.00 0.00 43.12 3.84
2069 2107 0.322456 TTCATCAACCAAGGCTCCCG 60.322 55.000 0.00 0.00 0.00 5.14
2091 2129 9.276590 TCGCTTCATAGATGACATTGAAATATT 57.723 29.630 3.34 0.00 36.36 1.28
2093 2131 7.386025 CCTCGCTTCATAGATGACATTGAAATA 59.614 37.037 3.34 0.00 36.36 1.40
2145 2183 4.202440 CCCTGAACATGCTCATAATCCTCT 60.202 45.833 0.00 0.00 0.00 3.69
2191 2229 6.527423 TCTATTTTTCCACTTTACCTCACGT 58.473 36.000 0.00 0.00 0.00 4.49
2206 2244 9.581099 TTTGTCCAAGTGAACTTTCTATTTTTC 57.419 29.630 0.00 0.00 33.11 2.29
2217 2255 1.940613 GCTCGTTTGTCCAAGTGAACT 59.059 47.619 0.00 0.00 0.00 3.01
2239 2277 5.128033 TGGATACCATTGTTGGATCATGT 57.872 39.130 0.00 0.00 46.92 3.21
2242 2280 4.102367 TCGATGGATACCATTGTTGGATCA 59.898 41.667 15.07 0.00 45.26 2.92
2245 2283 3.198853 TGTCGATGGATACCATTGTTGGA 59.801 43.478 15.07 3.01 45.26 3.53
2257 2295 2.834549 ACAGAAGACCTTGTCGATGGAT 59.165 45.455 8.69 0.00 37.67 3.41
2259 2297 2.751166 ACAGAAGACCTTGTCGATGG 57.249 50.000 0.00 0.00 37.67 3.51
2272 2310 2.917933 TCCCATTCCGCATTACAGAAG 58.082 47.619 0.00 0.00 0.00 2.85
2284 2322 3.941704 AGAAAGAGGACATCCCATTCC 57.058 47.619 0.00 0.00 37.41 3.01
2304 2342 5.670485 CCGCAGCAATTACCATATAGGATA 58.330 41.667 0.00 0.00 41.22 2.59
2334 2372 2.265739 GGCAGTGATCCGAGCACA 59.734 61.111 18.52 0.00 38.70 4.57
2356 2394 0.035317 CTGTAGAGTTGGCCAGCACA 59.965 55.000 22.64 15.72 0.00 4.57
2377 2415 0.681175 CAACAGGCCTCCTTTTTGGG 59.319 55.000 0.00 0.00 36.20 4.12
2396 2434 2.230660 CCAGAAAGACCCAAACCTGAC 58.769 52.381 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.