Multiple sequence alignment - TraesCS4B01G164000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G164000 chr4B 100.000 5582 0 0 1 5582 339263877 339269458 0.000000e+00 10309
1 TraesCS4B01G164000 chr4B 84.000 175 20 3 2434 2600 285616726 285616552 1.610000e-35 161
2 TraesCS4B01G164000 chr4A 95.441 2018 66 10 1449 3446 312880215 312882226 0.000000e+00 3193
3 TraesCS4B01G164000 chr4A 96.691 1360 36 3 3605 4959 312882223 312883578 0.000000e+00 2254
4 TraesCS4B01G164000 chr4A 92.711 686 22 5 793 1450 312879500 312880185 0.000000e+00 965
5 TraesCS4B01G164000 chr4A 83.784 481 46 11 5054 5532 312971700 312972150 1.440000e-115 427
6 TraesCS4B01G164000 chr4D 95.290 2017 46 13 1449 3446 189697015 189695029 0.000000e+00 3153
7 TraesCS4B01G164000 chr4D 95.921 1520 38 11 3636 5152 189695014 189693516 0.000000e+00 2442
8 TraesCS4B01G164000 chr4D 96.561 756 9 5 711 1450 189697800 189697046 0.000000e+00 1236
9 TraesCS4B01G164000 chr4D 95.035 705 30 2 1 703 93449656 93450357 0.000000e+00 1103
10 TraesCS4B01G164000 chr4D 93.392 227 11 3 5157 5381 189693364 189693140 3.220000e-87 333
11 TraesCS4B01G164000 chr4D 82.323 198 27 7 508 701 93448049 93447856 1.240000e-36 165
12 TraesCS4B01G164000 chr1D 95.875 703 24 2 1 701 239622070 239622769 0.000000e+00 1133
13 TraesCS4B01G164000 chr1D 96.000 175 5 2 3439 3612 178466301 178466474 3.290000e-72 283
14 TraesCS4B01G164000 chr1D 91.667 204 9 7 3426 3624 36612317 36612117 5.510000e-70 276
15 TraesCS4B01G164000 chr1D 86.310 168 15 1 2434 2593 250738610 250738443 5.750000e-40 176
16 TraesCS4B01G164000 chr1D 85.714 168 16 1 2434 2593 122838926 122838759 2.670000e-38 171
17 TraesCS4B01G164000 chr2D 94.595 703 35 2 1 701 118533519 118532818 0.000000e+00 1085
18 TraesCS4B01G164000 chr2D 92.147 191 12 3 3426 3613 316333927 316334117 3.320000e-67 267
19 TraesCS4B01G164000 chr2D 86.228 167 14 2 2436 2593 590154931 590154765 7.430000e-39 172
20 TraesCS4B01G164000 chr2D 82.828 198 27 7 508 702 118535120 118535313 2.670000e-38 171
21 TraesCS4B01G164000 chr2D 85.143 175 16 3 2428 2593 342099806 342099633 2.670000e-38 171
22 TraesCS4B01G164000 chr3B 94.331 688 36 2 1 685 809806696 809806009 0.000000e+00 1051
23 TraesCS4B01G164000 chr3B 95.954 173 7 0 3436 3608 580469263 580469435 1.180000e-71 281
24 TraesCS4B01G164000 chr3B 82.741 197 28 6 508 701 809807592 809807785 2.670000e-38 171
25 TraesCS4B01G164000 chr3B 84.615 169 17 2 2434 2593 332944677 332944509 5.790000e-35 159
26 TraesCS4B01G164000 chr3A 96.474 397 14 0 4 400 431135364 431134968 0.000000e+00 656
27 TraesCS4B01G164000 chr3A 91.393 244 18 2 460 701 431134957 431134715 1.160000e-86 331
28 TraesCS4B01G164000 chr5D 84.553 492 46 10 1 463 441404986 441405476 1.420000e-125 460
29 TraesCS4B01G164000 chr5A 84.553 492 46 11 1 463 558175734 558176224 1.420000e-125 460
30 TraesCS4B01G164000 chr5A 97.006 167 4 1 3445 3610 382566638 382566804 4.260000e-71 279
31 TraesCS4B01G164000 chr5A 96.429 168 5 1 3445 3611 290391861 290391694 5.510000e-70 276
32 TraesCS4B01G164000 chr5B 84.381 493 47 10 1 464 537784270 537784761 1.830000e-124 457
33 TraesCS4B01G164000 chr7D 96.591 176 5 1 3434 3608 69592835 69592660 1.970000e-74 291
34 TraesCS4B01G164000 chr7D 82.955 176 21 5 2428 2594 312466908 312467083 3.480000e-32 150
35 TraesCS4B01G164000 chr7D 89.744 78 8 0 2428 2505 433012851 433012928 3.560000e-17 100
36 TraesCS4B01G164000 chr2B 95.977 174 5 2 3440 3612 719520501 719520673 1.180000e-71 281
37 TraesCS4B01G164000 chr2B 84.000 175 18 3 2428 2593 407236349 407236176 5.790000e-35 159
38 TraesCS4B01G164000 chr6D 94.972 179 6 3 3435 3610 32865158 32865336 1.530000e-70 278
39 TraesCS4B01G164000 chr1A 83.333 192 30 2 511 701 33018882 33019072 5.750000e-40 176
40 TraesCS4B01G164000 chr1A 83.436 163 19 1 2439 2593 320892731 320892569 1.620000e-30 145
41 TraesCS4B01G164000 chr2A 84.483 174 18 2 2428 2593 451810548 451810376 4.470000e-36 163
42 TraesCS4B01G164000 chr7B 94.444 72 4 0 2434 2505 449554203 449554132 1.640000e-20 111
43 TraesCS4B01G164000 chr6B 89.744 78 8 0 2428 2505 310222068 310222145 3.560000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G164000 chr4B 339263877 339269458 5581 False 10309.000000 10309 100.000000 1 5582 1 chr4B.!!$F1 5581
1 TraesCS4B01G164000 chr4A 312879500 312883578 4078 False 2137.333333 3193 94.947667 793 4959 3 chr4A.!!$F2 4166
2 TraesCS4B01G164000 chr4D 189693140 189697800 4660 True 1791.000000 3153 95.291000 711 5381 4 chr4D.!!$R2 4670
3 TraesCS4B01G164000 chr4D 93449656 93450357 701 False 1103.000000 1103 95.035000 1 703 1 chr4D.!!$F1 702
4 TraesCS4B01G164000 chr1D 239622070 239622769 699 False 1133.000000 1133 95.875000 1 701 1 chr1D.!!$F2 700
5 TraesCS4B01G164000 chr2D 118532818 118533519 701 True 1085.000000 1085 94.595000 1 701 1 chr2D.!!$R1 700
6 TraesCS4B01G164000 chr3B 809806009 809806696 687 True 1051.000000 1051 94.331000 1 685 1 chr3B.!!$R2 684
7 TraesCS4B01G164000 chr3A 431134715 431135364 649 True 493.500000 656 93.933500 4 701 2 chr3A.!!$R1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
770 777 0.874607 GGTCATCCATCCGCACGTAC 60.875 60.0 0.00 0.00 0.00 3.67 F
1413 1449 0.255033 GGATCCACCCAGGGTTACAC 59.745 60.0 9.12 0.97 38.24 2.90 F
2883 2965 0.400213 TGAGGGTTCATGTCCACACC 59.600 55.0 10.68 3.17 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1664 0.249868 TTGACTCCAACAGCAGGTCG 60.250 55.0 0.0 0.0 0.0 4.79 R
3234 3328 1.195442 TGAACTCCACCCCACGCATA 61.195 55.0 0.0 0.0 0.0 3.14 R
4684 4785 0.106708 TGCGGATACAAGAGATGCCC 59.893 55.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
318 320 1.622312 ACGGAGAACAAGAACCTACCC 59.378 52.381 0.00 0.00 0.00 3.69
499 506 1.377202 GAGGCCAGCGGTTCATGAA 60.377 57.895 5.01 3.38 0.00 2.57
530 537 1.689258 GGGGGTATCTGCAAAATGGCT 60.689 52.381 0.00 0.00 34.04 4.75
542 549 1.940883 AAATGGCTAGCGACGACCGA 61.941 55.000 9.00 0.00 41.76 4.69
632 639 6.658391 ACAAGTTCGAGGACTACATAGTTAGT 59.342 38.462 0.00 0.00 36.50 2.24
703 710 2.483188 CCTGCCGTGGTATTACCTCTTC 60.483 54.545 13.90 5.64 39.58 2.87
704 711 1.483415 TGCCGTGGTATTACCTCTTCC 59.517 52.381 13.90 2.89 39.58 3.46
705 712 1.761198 GCCGTGGTATTACCTCTTCCT 59.239 52.381 13.90 0.00 39.58 3.36
706 713 2.483188 GCCGTGGTATTACCTCTTCCTG 60.483 54.545 13.90 0.00 39.58 3.86
707 714 2.102588 CCGTGGTATTACCTCTTCCTGG 59.897 54.545 13.90 3.50 39.58 4.45
708 715 2.764572 CGTGGTATTACCTCTTCCTGGT 59.235 50.000 13.90 0.00 39.58 4.00
709 716 3.181478 CGTGGTATTACCTCTTCCTGGTC 60.181 52.174 13.90 0.00 39.58 4.02
760 767 2.275418 GGCCAACGGGTCATCCAT 59.725 61.111 0.00 0.00 39.19 3.41
770 777 0.874607 GGTCATCCATCCGCACGTAC 60.875 60.000 0.00 0.00 0.00 3.67
901 920 4.925576 CCTCGCCCCGTCGAATCG 62.926 72.222 0.00 0.00 38.08 3.34
903 922 3.808771 CTCGCCCCGTCGAATCGAG 62.809 68.421 5.25 12.78 40.22 4.04
904 923 4.925576 CGCCCCGTCGAATCGAGG 62.926 72.222 17.19 17.19 40.70 4.63
910 939 2.277084 CCCGTCGAATCGAGGAAAAAT 58.723 47.619 24.35 0.00 43.12 1.82
978 1014 4.785453 CTCGTTGGGAGGGCTGCC 62.785 72.222 11.05 11.05 41.95 4.85
1199 1235 0.725117 CGTTATCCTTGGCCGTGTTC 59.275 55.000 0.00 0.00 0.00 3.18
1224 1260 0.673985 GTTTTGGCAGGGGTTGACTC 59.326 55.000 0.00 0.00 35.09 3.36
1363 1399 0.602106 CTGATGCCCTGGTGCTATCG 60.602 60.000 8.32 0.00 0.00 2.92
1385 1421 3.389206 GCTCCGAAGCGATGTGAC 58.611 61.111 0.00 0.00 39.10 3.67
1413 1449 0.255033 GGATCCACCCAGGGTTACAC 59.745 60.000 9.12 0.97 38.24 2.90
1518 1589 8.068892 TCAATCAATTCATTCATGGATCACAA 57.931 30.769 0.00 0.00 0.00 3.33
1532 1603 5.541845 TGGATCACAAAGAGTTACAGACAG 58.458 41.667 0.00 0.00 0.00 3.51
1591 1664 4.524714 TCAACATGTAGGCCTATAGCTCTC 59.475 45.833 17.38 1.12 43.05 3.20
1709 1782 4.691685 AGTTATGCCATTTACGAACGTGAA 59.308 37.500 10.14 8.46 0.00 3.18
1772 1845 5.954296 AATTGAACAGTCAGGACATTCAG 57.046 39.130 14.67 0.00 38.79 3.02
1877 1953 7.448469 ACTGCATTCTGTTGTAACTAGGAATTT 59.552 33.333 0.00 0.00 0.00 1.82
1979 2057 6.444633 CAAAGAGACATGCTTCTGAAAATGT 58.555 36.000 14.73 14.73 36.00 2.71
2085 2163 4.091365 GCACAGTTTCAGGTCAAAACAAAC 59.909 41.667 2.05 0.00 38.73 2.93
2489 2567 4.935808 CAGTTAATCACTACTTGGTGGGTC 59.064 45.833 0.00 0.00 37.75 4.46
2490 2568 4.595781 AGTTAATCACTACTTGGTGGGTCA 59.404 41.667 0.00 0.00 37.75 4.02
2564 2644 4.651503 CCTACTCACCACCTGACTGATATT 59.348 45.833 0.00 0.00 0.00 1.28
2883 2965 0.400213 TGAGGGTTCATGTCCACACC 59.600 55.000 10.68 3.17 0.00 4.16
3041 3123 7.881775 AACAGTATTTCTCACTCCTTTGTTT 57.118 32.000 0.00 0.00 0.00 2.83
3085 3167 8.764287 GCTTATTTGGTACATTTTATTGATGGC 58.236 33.333 0.00 0.00 39.30 4.40
3175 3257 5.180492 TGGTAAACAACTTAATCCTTCGCAG 59.820 40.000 0.00 0.00 0.00 5.18
3230 3324 3.924144 TGTTTGACAATTATGCCCTTGC 58.076 40.909 0.00 0.00 38.26 4.01
3234 3328 2.102578 GACAATTATGCCCTTGCCTGT 58.897 47.619 0.00 0.00 36.33 4.00
3263 3359 1.000843 GGTGGAGTTCAATTTGCCCAC 59.999 52.381 15.42 15.42 42.29 4.61
3296 3392 3.012959 TCCCTGTTCATCCTTAGGACTCT 59.987 47.826 1.74 0.00 32.98 3.24
3336 3432 9.486497 TGTACGGTTTACAAAGTGAAATATACA 57.514 29.630 0.00 0.00 0.00 2.29
3392 3489 6.800543 AGTATAAGAGTGTATCAGTGTGCAG 58.199 40.000 0.00 0.00 0.00 4.41
3449 3546 9.992910 TTAACAGTATACACTACAATGTACTCG 57.007 33.333 5.50 0.00 37.88 4.18
3450 3547 6.493116 ACAGTATACACTACAATGTACTCGC 58.507 40.000 5.50 0.00 37.88 5.03
3451 3548 6.318144 ACAGTATACACTACAATGTACTCGCT 59.682 38.462 5.50 0.00 37.88 4.93
3452 3549 6.851837 CAGTATACACTACAATGTACTCGCTC 59.148 42.308 5.50 0.00 37.88 5.03
3453 3550 3.505464 ACACTACAATGTACTCGCTCC 57.495 47.619 0.00 0.00 0.00 4.70
3454 3551 2.159421 ACACTACAATGTACTCGCTCCG 60.159 50.000 0.00 0.00 0.00 4.63
3455 3552 2.089980 ACTACAATGTACTCGCTCCGT 58.910 47.619 0.00 0.00 0.00 4.69
3456 3553 2.490903 ACTACAATGTACTCGCTCCGTT 59.509 45.455 0.00 0.00 0.00 4.44
3457 3554 1.992170 ACAATGTACTCGCTCCGTTC 58.008 50.000 0.00 0.00 0.00 3.95
3458 3555 1.278238 CAATGTACTCGCTCCGTTCC 58.722 55.000 0.00 0.00 0.00 3.62
3459 3556 1.135083 CAATGTACTCGCTCCGTTCCT 60.135 52.381 0.00 0.00 0.00 3.36
3460 3557 2.048444 ATGTACTCGCTCCGTTCCTA 57.952 50.000 0.00 0.00 0.00 2.94
3461 3558 1.825090 TGTACTCGCTCCGTTCCTAA 58.175 50.000 0.00 0.00 0.00 2.69
3462 3559 2.161855 TGTACTCGCTCCGTTCCTAAA 58.838 47.619 0.00 0.00 0.00 1.85
3463 3560 2.756760 TGTACTCGCTCCGTTCCTAAAT 59.243 45.455 0.00 0.00 0.00 1.40
3464 3561 3.947196 TGTACTCGCTCCGTTCCTAAATA 59.053 43.478 0.00 0.00 0.00 1.40
3465 3562 4.581824 TGTACTCGCTCCGTTCCTAAATAT 59.418 41.667 0.00 0.00 0.00 1.28
3466 3563 4.667519 ACTCGCTCCGTTCCTAAATATT 57.332 40.909 0.00 0.00 0.00 1.28
3467 3564 5.019785 ACTCGCTCCGTTCCTAAATATTT 57.980 39.130 5.89 5.89 0.00 1.40
3468 3565 4.809426 ACTCGCTCCGTTCCTAAATATTTG 59.191 41.667 11.05 1.40 0.00 2.32
3469 3566 4.761975 TCGCTCCGTTCCTAAATATTTGT 58.238 39.130 11.05 0.00 0.00 2.83
3470 3567 4.807304 TCGCTCCGTTCCTAAATATTTGTC 59.193 41.667 11.05 0.00 0.00 3.18
3471 3568 4.809426 CGCTCCGTTCCTAAATATTTGTCT 59.191 41.667 11.05 0.00 0.00 3.41
3472 3569 5.293569 CGCTCCGTTCCTAAATATTTGTCTT 59.706 40.000 11.05 0.00 0.00 3.01
3473 3570 6.183360 CGCTCCGTTCCTAAATATTTGTCTTT 60.183 38.462 11.05 0.00 0.00 2.52
3474 3571 7.535997 GCTCCGTTCCTAAATATTTGTCTTTT 58.464 34.615 11.05 0.00 0.00 2.27
3475 3572 8.027189 GCTCCGTTCCTAAATATTTGTCTTTTT 58.973 33.333 11.05 0.00 0.00 1.94
3478 3575 9.783256 CCGTTCCTAAATATTTGTCTTTTTAGG 57.217 33.333 11.05 12.11 46.30 2.69
3479 3576 9.783256 CGTTCCTAAATATTTGTCTTTTTAGGG 57.217 33.333 11.05 2.25 45.55 3.53
3497 3594 9.936759 TTTTTAGGGATTTCAAATGATTACCAC 57.063 29.630 0.00 0.00 0.00 4.16
3498 3595 8.657387 TTTAGGGATTTCAAATGATTACCACA 57.343 30.769 0.00 0.00 0.00 4.17
3499 3596 8.837099 TTAGGGATTTCAAATGATTACCACAT 57.163 30.769 0.00 0.00 0.00 3.21
3500 3597 9.928618 TTAGGGATTTCAAATGATTACCACATA 57.071 29.630 0.00 0.00 0.00 2.29
3501 3598 8.237811 AGGGATTTCAAATGATTACCACATAC 57.762 34.615 0.00 0.00 0.00 2.39
3502 3599 7.013274 AGGGATTTCAAATGATTACCACATACG 59.987 37.037 0.00 0.00 0.00 3.06
3503 3600 7.138736 GGATTTCAAATGATTACCACATACGG 58.861 38.462 0.00 0.00 0.00 4.02
3504 3601 7.012894 GGATTTCAAATGATTACCACATACGGA 59.987 37.037 0.00 0.00 0.00 4.69
3505 3602 7.873719 TTTCAAATGATTACCACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
3506 3603 6.859420 TCAAATGATTACCACATACGGATG 57.141 37.500 5.94 5.94 39.16 3.51
3508 3605 7.501844 TCAAATGATTACCACATACGGATGTA 58.498 34.615 14.23 0.00 44.82 2.29
3509 3606 8.154203 TCAAATGATTACCACATACGGATGTAT 58.846 33.333 14.23 7.46 44.82 2.29
3510 3607 9.430623 CAAATGATTACCACATACGGATGTATA 57.569 33.333 14.23 6.38 44.82 1.47
3514 3611 9.689501 TGATTACCACATACGGATGTATATAGA 57.310 33.333 14.23 0.00 44.82 1.98
3515 3612 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
3516 3613 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
3517 3614 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3519 3616 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3537 3634 8.430801 AGACATATTTTAGAGTGCAGATTCAC 57.569 34.615 0.00 0.00 37.24 3.18
3546 3643 4.170292 AGTGCAGATTCACTCATTTTGC 57.830 40.909 0.00 0.00 43.28 3.68
3547 3644 3.825014 AGTGCAGATTCACTCATTTTGCT 59.175 39.130 0.00 0.00 43.28 3.91
3548 3645 4.082895 AGTGCAGATTCACTCATTTTGCTC 60.083 41.667 0.00 0.00 43.28 4.26
3549 3646 3.192001 TGCAGATTCACTCATTTTGCTCC 59.808 43.478 0.00 0.00 0.00 4.70
3550 3647 3.730061 GCAGATTCACTCATTTTGCTCCG 60.730 47.826 0.00 0.00 0.00 4.63
3551 3648 3.438087 CAGATTCACTCATTTTGCTCCGT 59.562 43.478 0.00 0.00 0.00 4.69
3552 3649 4.631377 CAGATTCACTCATTTTGCTCCGTA 59.369 41.667 0.00 0.00 0.00 4.02
3553 3650 5.295292 CAGATTCACTCATTTTGCTCCGTAT 59.705 40.000 0.00 0.00 0.00 3.06
3554 3651 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3555 3652 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3556 3653 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3557 3654 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3558 3655 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3559 3656 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3560 3657 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3561 3658 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3562 3659 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3563 3660 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3564 3661 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3565 3662 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3566 3663 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3567 3664 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3568 3665 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3569 3666 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3570 3667 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3571 3668 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3572 3669 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3573 3670 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3574 3671 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3575 3672 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3576 3673 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3577 3674 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3578 3675 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3579 3676 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3580 3677 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3581 3678 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3582 3679 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3583 3680 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3584 3681 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3585 3682 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3586 3683 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3599 3696 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3600 3697 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3601 3698 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3602 3699 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3603 3700 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3697 3794 5.415701 TGATTGTAGTTGCTCTTTCATTCCC 59.584 40.000 0.00 0.00 0.00 3.97
3709 3806 4.164221 TCTTTCATTCCCACCAGACCTATC 59.836 45.833 0.00 0.00 0.00 2.08
3786 3883 1.135112 TCTACACTATGTGGCGTGCAG 60.135 52.381 2.72 0.00 37.94 4.41
3824 3921 7.655521 AATATATATGGAGGCTACGTTGCTA 57.344 36.000 20.87 6.18 0.00 3.49
3826 3923 4.682778 ATATGGAGGCTACGTTGCTAAA 57.317 40.909 20.87 5.90 0.00 1.85
4038 4135 1.656652 CAGCCAGGGTATGTTTCGAG 58.343 55.000 0.00 0.00 0.00 4.04
4098 4199 1.400846 CTGCATGCTTGGTCATCTGTC 59.599 52.381 20.33 0.00 0.00 3.51
4406 4507 3.608474 GCGAAACGAATGCTAACAAAGGT 60.608 43.478 0.00 0.00 0.00 3.50
4511 4612 2.158885 TGGAAGATGTTGACGGTGAACA 60.159 45.455 15.25 15.25 37.70 3.18
4761 4863 7.334921 CGGTCCTTTTTGTATATTGTAACAGGA 59.665 37.037 0.00 0.00 0.00 3.86
4789 4891 8.475331 ACTGACTACACCTTGATTTTTATACG 57.525 34.615 0.00 0.00 0.00 3.06
4948 5051 2.903678 CCATCGTTGTTGTCAAAGACG 58.096 47.619 13.10 13.10 42.61 4.18
4970 5073 2.015627 CGTGTGTGCCATTTTGCCG 61.016 57.895 0.00 0.00 0.00 5.69
4980 5083 1.135699 CATTTTGCCGATGACGCTGC 61.136 55.000 0.00 0.00 38.29 5.25
5059 5165 2.580815 TGAGCATCAGCGACCAGG 59.419 61.111 0.00 0.00 42.56 4.45
5077 5183 2.679092 CAGGAATGGCCTCCAGCA 59.321 61.111 13.29 0.00 46.97 4.41
5080 5186 1.895707 GGAATGGCCTCCAGCATCG 60.896 63.158 3.32 0.00 46.50 3.84
5095 5201 0.248661 CATCGGACGAGCTGACGATT 60.249 55.000 1.33 0.00 43.38 3.34
5108 5214 3.589982 CGATTTCGTCCTCGCTCG 58.410 61.111 0.00 0.00 36.96 5.03
5131 5237 1.376037 GCGTGAGGTTTAGCTGGCT 60.376 57.895 0.00 0.00 0.00 4.75
5136 5242 2.046314 GGTTTAGCTGGCTGGCGA 60.046 61.111 5.25 0.00 37.29 5.54
5152 5258 1.090052 GCGAAGATGTGGGTACAGCC 61.090 60.000 0.00 0.00 44.08 4.85
5153 5259 0.249120 CGAAGATGTGGGTACAGCCA 59.751 55.000 0.00 0.00 44.08 4.75
5257 5510 2.736995 GCAGCGTGCGGAGTTGTA 60.737 61.111 0.00 0.00 31.71 2.41
5259 5512 2.048503 AGCGTGCGGAGTTGTACC 60.049 61.111 0.00 0.00 0.00 3.34
5301 5554 2.813908 CGTCTACAAGCGGTGGGC 60.814 66.667 0.00 0.00 44.05 5.36
5318 5571 3.470888 CTGGAGCGGTAGTGGGGG 61.471 72.222 0.00 0.00 0.00 5.40
5319 5572 4.326227 TGGAGCGGTAGTGGGGGT 62.326 66.667 0.00 0.00 0.00 4.95
5321 5574 3.782443 GAGCGGTAGTGGGGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
5322 5575 4.326227 AGCGGTAGTGGGGGTGGA 62.326 66.667 0.00 0.00 0.00 4.02
5323 5576 3.782443 GCGGTAGTGGGGGTGGAG 61.782 72.222 0.00 0.00 0.00 3.86
5324 5577 2.284405 CGGTAGTGGGGGTGGAGT 60.284 66.667 0.00 0.00 0.00 3.85
5340 5594 1.534163 GGAGTAACGGCAACTTCAACC 59.466 52.381 0.00 0.00 0.00 3.77
5364 5618 1.613925 CCGACTCAACCTGACAGAAGA 59.386 52.381 3.32 0.00 0.00 2.87
5372 5626 3.045601 ACCTGACAGAAGATTTGTCCG 57.954 47.619 3.32 0.00 43.32 4.79
5376 5630 3.476552 TGACAGAAGATTTGTCCGCTTT 58.523 40.909 3.24 0.00 43.32 3.51
5381 5635 4.676924 CAGAAGATTTGTCCGCTTTTTGTC 59.323 41.667 0.00 0.00 0.00 3.18
5382 5636 3.643159 AGATTTGTCCGCTTTTTGTCC 57.357 42.857 0.00 0.00 0.00 4.02
5383 5637 2.296190 AGATTTGTCCGCTTTTTGTCCC 59.704 45.455 0.00 0.00 0.00 4.46
5384 5638 1.475403 TTTGTCCGCTTTTTGTCCCA 58.525 45.000 0.00 0.00 0.00 4.37
5385 5639 1.475403 TTGTCCGCTTTTTGTCCCAA 58.525 45.000 0.00 0.00 0.00 4.12
5386 5640 0.741915 TGTCCGCTTTTTGTCCCAAC 59.258 50.000 0.00 0.00 0.00 3.77
5387 5641 0.317519 GTCCGCTTTTTGTCCCAACG 60.318 55.000 0.00 0.00 0.00 4.10
5388 5642 1.660264 CCGCTTTTTGTCCCAACGC 60.660 57.895 0.00 0.00 0.00 4.84
5389 5643 2.008697 CGCTTTTTGTCCCAACGCG 61.009 57.895 3.53 3.53 0.00 6.01
5390 5644 1.660264 GCTTTTTGTCCCAACGCGG 60.660 57.895 12.47 0.00 0.00 6.46
5391 5645 2.026522 CTTTTTGTCCCAACGCGGA 58.973 52.632 12.47 0.00 36.56 5.54
5396 5650 3.408851 GTCCCAACGCGGACGAAC 61.409 66.667 12.47 0.00 42.88 3.95
5399 5653 2.428902 CCAACGCGGACGAACGTA 60.429 61.111 12.47 0.00 42.68 3.57
5400 5654 1.802715 CCAACGCGGACGAACGTAT 60.803 57.895 12.47 0.00 42.68 3.06
5401 5655 1.346378 CCAACGCGGACGAACGTATT 61.346 55.000 12.47 0.00 42.68 1.89
5402 5656 0.435769 CAACGCGGACGAACGTATTT 59.564 50.000 12.47 0.00 42.68 1.40
5403 5657 0.710017 AACGCGGACGAACGTATTTC 59.290 50.000 12.47 0.00 42.68 2.17
5404 5658 0.387112 ACGCGGACGAACGTATTTCA 60.387 50.000 12.47 0.00 43.93 2.69
5405 5659 0.022853 CGCGGACGAACGTATTTCAC 59.977 55.000 0.00 0.00 43.93 3.18
5406 5660 1.062258 GCGGACGAACGTATTTCACA 58.938 50.000 0.00 0.00 33.24 3.58
5407 5661 1.657094 GCGGACGAACGTATTTCACAT 59.343 47.619 0.00 0.00 33.24 3.21
5408 5662 2.093152 GCGGACGAACGTATTTCACATT 59.907 45.455 0.00 0.00 33.24 2.71
5409 5663 3.423907 GCGGACGAACGTATTTCACATTT 60.424 43.478 0.00 0.00 33.24 2.32
5410 5664 4.079028 CGGACGAACGTATTTCACATTTG 58.921 43.478 0.00 0.00 33.24 2.32
5411 5665 4.376615 CGGACGAACGTATTTCACATTTGT 60.377 41.667 0.00 0.00 33.24 2.83
5412 5666 4.843984 GGACGAACGTATTTCACATTTGTG 59.156 41.667 4.29 4.29 46.91 3.33
5413 5667 4.215965 ACGAACGTATTTCACATTTGTGC 58.784 39.130 5.81 0.00 45.25 4.57
5414 5668 3.602062 CGAACGTATTTCACATTTGTGCC 59.398 43.478 5.81 0.00 45.25 5.01
5415 5669 3.196007 ACGTATTTCACATTTGTGCCG 57.804 42.857 5.81 5.68 45.25 5.69
5416 5670 2.095466 ACGTATTTCACATTTGTGCCGG 60.095 45.455 5.81 0.00 45.25 6.13
5417 5671 2.095466 CGTATTTCACATTTGTGCCGGT 60.095 45.455 1.90 0.00 45.25 5.28
5418 5672 3.610585 CGTATTTCACATTTGTGCCGGTT 60.611 43.478 1.90 0.00 45.25 4.44
5419 5673 2.969628 TTTCACATTTGTGCCGGTTT 57.030 40.000 1.90 0.00 45.25 3.27
5420 5674 2.969628 TTCACATTTGTGCCGGTTTT 57.030 40.000 1.90 0.00 45.25 2.43
5421 5675 2.500509 TCACATTTGTGCCGGTTTTC 57.499 45.000 1.90 0.00 45.25 2.29
5422 5676 1.067821 TCACATTTGTGCCGGTTTTCC 59.932 47.619 1.90 0.00 45.25 3.13
5423 5677 0.391228 ACATTTGTGCCGGTTTTCCC 59.609 50.000 1.90 0.00 36.42 3.97
5424 5678 0.678950 CATTTGTGCCGGTTTTCCCT 59.321 50.000 1.90 0.00 36.42 4.20
5425 5679 1.069978 CATTTGTGCCGGTTTTCCCTT 59.930 47.619 1.90 0.00 36.42 3.95
5426 5680 1.196012 TTTGTGCCGGTTTTCCCTTT 58.804 45.000 1.90 0.00 36.42 3.11
5427 5681 1.196012 TTGTGCCGGTTTTCCCTTTT 58.804 45.000 1.90 0.00 36.42 2.27
5428 5682 1.196012 TGTGCCGGTTTTCCCTTTTT 58.804 45.000 1.90 0.00 36.42 1.94
5429 5683 2.385803 TGTGCCGGTTTTCCCTTTTTA 58.614 42.857 1.90 0.00 36.42 1.52
5430 5684 2.764572 TGTGCCGGTTTTCCCTTTTTAA 59.235 40.909 1.90 0.00 36.42 1.52
5431 5685 3.388350 TGTGCCGGTTTTCCCTTTTTAAT 59.612 39.130 1.90 0.00 36.42 1.40
5432 5686 3.991773 GTGCCGGTTTTCCCTTTTTAATC 59.008 43.478 1.90 0.00 36.42 1.75
5433 5687 3.007074 TGCCGGTTTTCCCTTTTTAATCC 59.993 43.478 1.90 0.00 36.42 3.01
5434 5688 3.259876 GCCGGTTTTCCCTTTTTAATCCT 59.740 43.478 1.90 0.00 36.42 3.24
5435 5689 4.816392 CCGGTTTTCCCTTTTTAATCCTG 58.184 43.478 0.00 0.00 36.42 3.86
5436 5690 4.322424 CCGGTTTTCCCTTTTTAATCCTGG 60.322 45.833 0.00 0.00 36.42 4.45
5437 5691 4.282449 CGGTTTTCCCTTTTTAATCCTGGT 59.718 41.667 0.00 0.00 36.42 4.00
5438 5692 5.547465 GGTTTTCCCTTTTTAATCCTGGTG 58.453 41.667 0.00 0.00 0.00 4.17
5439 5693 4.882842 TTTCCCTTTTTAATCCTGGTGC 57.117 40.909 0.00 0.00 0.00 5.01
5440 5694 2.815158 TCCCTTTTTAATCCTGGTGCC 58.185 47.619 0.00 0.00 0.00 5.01
5441 5695 1.476488 CCCTTTTTAATCCTGGTGCCG 59.524 52.381 0.00 0.00 0.00 5.69
5442 5696 1.476488 CCTTTTTAATCCTGGTGCCGG 59.524 52.381 0.00 0.00 0.00 6.13
5443 5697 2.442413 CTTTTTAATCCTGGTGCCGGA 58.558 47.619 5.05 1.72 34.52 5.14
5444 5698 2.818751 TTTTAATCCTGGTGCCGGAT 57.181 45.000 5.05 4.00 42.95 4.18
5446 5700 2.818751 TTAATCCTGGTGCCGGATTT 57.181 45.000 22.41 9.70 46.37 2.17
5447 5701 2.341846 TAATCCTGGTGCCGGATTTC 57.658 50.000 22.41 0.00 46.37 2.17
5448 5702 0.331278 AATCCTGGTGCCGGATTTCA 59.669 50.000 5.05 0.00 46.37 2.69
5449 5703 0.107017 ATCCTGGTGCCGGATTTCAG 60.107 55.000 5.05 6.59 38.05 3.02
5450 5704 1.198094 TCCTGGTGCCGGATTTCAGA 61.198 55.000 5.05 0.00 0.00 3.27
5451 5705 0.322456 CCTGGTGCCGGATTTCAGAA 60.322 55.000 5.05 0.00 0.00 3.02
5452 5706 1.683011 CCTGGTGCCGGATTTCAGAAT 60.683 52.381 5.05 0.00 0.00 2.40
5453 5707 2.094675 CTGGTGCCGGATTTCAGAATT 58.905 47.619 5.05 0.00 0.00 2.17
5454 5708 3.278574 CTGGTGCCGGATTTCAGAATTA 58.721 45.455 5.05 0.00 0.00 1.40
5455 5709 3.691575 TGGTGCCGGATTTCAGAATTAA 58.308 40.909 5.05 0.00 0.00 1.40
5456 5710 4.082845 TGGTGCCGGATTTCAGAATTAAA 58.917 39.130 5.05 0.00 0.00 1.52
5457 5711 4.524714 TGGTGCCGGATTTCAGAATTAAAA 59.475 37.500 5.05 0.00 0.00 1.52
5458 5712 5.011125 TGGTGCCGGATTTCAGAATTAAAAA 59.989 36.000 5.05 0.00 0.00 1.94
5481 5735 7.809546 AAAAAGCTAGCAAAAGTCTAGTCTT 57.190 32.000 18.83 0.00 36.71 3.01
5482 5736 8.904099 AAAAAGCTAGCAAAAGTCTAGTCTTA 57.096 30.769 18.83 0.00 36.71 2.10
5483 5737 7.892778 AAAGCTAGCAAAAGTCTAGTCTTAC 57.107 36.000 18.83 0.00 36.71 2.34
5484 5738 6.591750 AGCTAGCAAAAGTCTAGTCTTACA 57.408 37.500 18.83 0.00 36.71 2.41
5485 5739 7.176589 AGCTAGCAAAAGTCTAGTCTTACAT 57.823 36.000 18.83 0.00 36.71 2.29
5486 5740 7.616313 AGCTAGCAAAAGTCTAGTCTTACATT 58.384 34.615 18.83 0.00 36.71 2.71
5487 5741 8.750298 AGCTAGCAAAAGTCTAGTCTTACATTA 58.250 33.333 18.83 0.00 36.71 1.90
5488 5742 9.367444 GCTAGCAAAAGTCTAGTCTTACATTAA 57.633 33.333 10.63 0.00 36.71 1.40
5525 5779 9.958180 AAATATTAAATTAAAAACAGCCAGGCT 57.042 25.926 8.70 8.70 40.77 4.58
5544 5798 4.429212 CCGCGACCGACATCCACA 62.429 66.667 8.23 0.00 36.29 4.17
5545 5799 2.880879 CGCGACCGACATCCACAG 60.881 66.667 0.00 0.00 36.29 3.66
5546 5800 2.509336 GCGACCGACATCCACAGG 60.509 66.667 0.00 0.00 0.00 4.00
5547 5801 3.001902 GCGACCGACATCCACAGGA 62.002 63.158 0.00 0.00 35.55 3.86
5548 5802 1.589630 CGACCGACATCCACAGGAA 59.410 57.895 0.00 0.00 34.34 3.36
5549 5803 0.458543 CGACCGACATCCACAGGAAG 60.459 60.000 0.00 0.00 34.34 3.46
5550 5804 0.108138 GACCGACATCCACAGGAAGG 60.108 60.000 0.00 0.00 34.34 3.46
5551 5805 1.450312 CCGACATCCACAGGAAGGC 60.450 63.158 0.00 0.00 34.34 4.35
5552 5806 1.599047 CGACATCCACAGGAAGGCT 59.401 57.895 0.00 0.00 34.34 4.58
5553 5807 0.742281 CGACATCCACAGGAAGGCTG 60.742 60.000 0.00 0.00 34.34 4.85
5554 5808 0.326264 GACATCCACAGGAAGGCTGT 59.674 55.000 0.00 0.00 38.14 4.40
5555 5809 0.326264 ACATCCACAGGAAGGCTGTC 59.674 55.000 0.00 0.00 30.08 3.51
5556 5810 0.325933 CATCCACAGGAAGGCTGTCA 59.674 55.000 0.00 0.00 34.34 3.58
5557 5811 1.067295 ATCCACAGGAAGGCTGTCAA 58.933 50.000 0.00 0.00 34.34 3.18
5558 5812 0.108585 TCCACAGGAAGGCTGTCAAC 59.891 55.000 0.00 0.00 31.99 3.18
5559 5813 1.230635 CCACAGGAAGGCTGTCAACG 61.231 60.000 0.00 0.00 31.99 4.10
5560 5814 1.598130 ACAGGAAGGCTGTCAACGC 60.598 57.895 0.00 0.00 0.00 4.84
5575 5829 4.147322 CGCCCGACGTTGTGATGC 62.147 66.667 1.30 0.00 36.87 3.91
5576 5830 2.742372 GCCCGACGTTGTGATGCT 60.742 61.111 1.30 0.00 0.00 3.79
5577 5831 3.027170 GCCCGACGTTGTGATGCTG 62.027 63.158 1.30 0.00 0.00 4.41
5578 5832 1.374125 CCCGACGTTGTGATGCTGA 60.374 57.895 1.30 0.00 0.00 4.26
5579 5833 1.354337 CCCGACGTTGTGATGCTGAG 61.354 60.000 1.30 0.00 0.00 3.35
5580 5834 1.417592 CGACGTTGTGATGCTGAGC 59.582 57.895 0.00 0.00 0.00 4.26
5581 5835 1.790387 GACGTTGTGATGCTGAGCC 59.210 57.895 0.23 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.997315 CTCACTCCGGTGGCTCCA 60.997 66.667 8.63 0.00 43.17 3.86
468 473 4.400961 GCCTCGCTCCTTGCCTGT 62.401 66.667 0.00 0.00 38.78 4.00
530 537 3.803082 CCGGTTCGGTCGTCGCTA 61.803 66.667 0.00 0.00 42.73 4.26
632 639 7.971183 ACTTTGGTCTTTAAACTTGCAAAAA 57.029 28.000 0.00 0.00 0.00 1.94
647 654 4.697352 GTCTTGCATGTGATACTTTGGTCT 59.303 41.667 0.00 0.00 0.00 3.85
691 698 6.415573 ACAATTGACCAGGAAGAGGTAATAC 58.584 40.000 13.59 0.00 40.09 1.89
703 710 0.734889 GCGGATGACAATTGACCAGG 59.265 55.000 13.59 4.97 0.00 4.45
704 711 1.131126 GTGCGGATGACAATTGACCAG 59.869 52.381 13.59 7.53 0.00 4.00
705 712 1.164411 GTGCGGATGACAATTGACCA 58.836 50.000 13.59 9.92 0.00 4.02
706 713 0.451783 GGTGCGGATGACAATTGACC 59.548 55.000 13.59 2.52 0.00 4.02
707 714 0.096976 CGGTGCGGATGACAATTGAC 59.903 55.000 13.59 6.72 0.00 3.18
708 715 1.643868 GCGGTGCGGATGACAATTGA 61.644 55.000 13.59 0.00 0.00 2.57
709 716 1.226379 GCGGTGCGGATGACAATTG 60.226 57.895 3.24 3.24 0.00 2.32
760 767 2.337170 CTGGTGTGTACGTGCGGA 59.663 61.111 0.00 0.00 0.00 5.54
770 777 1.771073 TTTTGCGAGCGACTGGTGTG 61.771 55.000 0.00 0.00 0.00 3.82
901 920 7.564292 TCCCTAACCTCTACTCTATTTTTCCTC 59.436 40.741 0.00 0.00 0.00 3.71
903 922 7.672122 TCCCTAACCTCTACTCTATTTTTCC 57.328 40.000 0.00 0.00 0.00 3.13
904 923 9.549078 CATTCCCTAACCTCTACTCTATTTTTC 57.451 37.037 0.00 0.00 0.00 2.29
910 939 5.689564 CGTCCATTCCCTAACCTCTACTCTA 60.690 48.000 0.00 0.00 0.00 2.43
1199 1235 1.413118 ACCCCTGCCAAAACAAAGAG 58.587 50.000 0.00 0.00 0.00 2.85
1224 1260 1.064611 TCTCCCTACACCGAGAGAAGG 60.065 57.143 0.00 0.00 32.58 3.46
1363 1399 3.541713 ATCGCTTCGGAGCTCCCC 61.542 66.667 27.20 11.71 46.96 4.81
1385 1421 0.620030 TGGGTGGATCCATCACACAG 59.380 55.000 26.30 0.00 42.80 3.66
1413 1449 8.281212 ACATAATTAAGCTAAGAAACCACAGG 57.719 34.615 0.00 0.00 0.00 4.00
1518 1589 7.704578 TGTATTCTAGCTGTCTGTAACTCTT 57.295 36.000 0.00 0.00 0.00 2.85
1532 1603 8.148351 TGGTGAACTTACCATATGTATTCTAGC 58.852 37.037 1.24 1.28 45.46 3.42
1591 1664 0.249868 TTGACTCCAACAGCAGGTCG 60.250 55.000 0.00 0.00 0.00 4.79
1709 1782 5.130350 GGAGTTGCTCTCTAGTCTCTACAT 58.870 45.833 8.78 0.00 42.40 2.29
1742 1815 3.640967 CCTGACTGTTCAATTTCCCCAAA 59.359 43.478 0.00 0.00 0.00 3.28
1772 1845 3.127548 TCCGTTTAGACTGTCGACATACC 59.872 47.826 20.40 10.99 0.00 2.73
1902 1980 3.323403 GGATCTACCTGATAGTGCAAGCT 59.677 47.826 0.00 0.00 35.14 3.74
1903 1981 3.070159 TGGATCTACCTGATAGTGCAAGC 59.930 47.826 0.00 0.00 39.86 4.01
2085 2163 6.745907 CAGAATGTTCATGCAATACAGAACTG 59.254 38.462 15.41 13.27 37.34 3.16
2270 2348 7.554959 ACATCCTAACAGAAAGGAGAGTTTA 57.445 36.000 0.00 0.00 46.14 2.01
2278 2356 4.301072 TCCCAACATCCTAACAGAAAGG 57.699 45.455 0.00 0.00 35.26 3.11
2489 2567 3.123621 GCCGATAAATCAGCTATTCGGTG 59.876 47.826 10.44 0.00 41.05 4.94
2490 2568 3.006967 AGCCGATAAATCAGCTATTCGGT 59.993 43.478 10.44 0.00 38.69 4.69
2518 2598 2.385013 AAATGGGCGAAATTTCCAGC 57.615 45.000 12.54 10.57 33.68 4.85
2526 2606 3.456644 TGAGTAGGGATAAATGGGCGAAA 59.543 43.478 0.00 0.00 0.00 3.46
2564 2644 4.795469 TCAGGATATCGGTAACTGGTACA 58.205 43.478 5.08 0.00 34.01 2.90
2754 2836 7.026568 CGCAAGAAAGACACAATTTCATTAC 57.973 36.000 1.73 0.00 38.79 1.89
2883 2965 1.419922 CGTTCGCCATTTCCTGTCG 59.580 57.895 0.00 0.00 0.00 4.35
3041 3123 4.778213 AAGCCAATGCAGAGATAACCTA 57.222 40.909 0.00 0.00 41.13 3.08
3168 3250 9.262472 GTACAAGTAATAACAAAATCTGCGAAG 57.738 33.333 0.00 0.00 0.00 3.79
3171 3253 7.692291 CAGGTACAAGTAATAACAAAATCTGCG 59.308 37.037 0.00 0.00 0.00 5.18
3230 3324 2.124736 CCACCCCACGCATACAGG 60.125 66.667 0.00 0.00 0.00 4.00
3234 3328 1.195442 TGAACTCCACCCCACGCATA 61.195 55.000 0.00 0.00 0.00 3.14
3263 3359 2.364632 TGAACAGGGACTTGTGTTGTG 58.635 47.619 0.00 0.00 37.02 3.33
3296 3392 1.888018 GTACAGCTCCCGTGCACTA 59.112 57.895 16.19 0.00 34.99 2.74
3336 3432 8.102047 CAGAGATTGGCCAGATAGAATCTAATT 58.898 37.037 14.03 2.80 37.58 1.40
3379 3476 5.673337 TGTTTTCTTCTGCACACTGATAC 57.327 39.130 0.00 0.00 0.00 2.24
3392 3489 4.664150 TTTCCCCACACATGTTTTCTTC 57.336 40.909 0.00 0.00 0.00 2.87
3442 3539 1.825090 TTAGGAACGGAGCGAGTACA 58.175 50.000 0.00 0.00 0.00 2.90
3443 3540 2.927553 TTTAGGAACGGAGCGAGTAC 57.072 50.000 0.00 0.00 0.00 2.73
3444 3541 5.779529 AATATTTAGGAACGGAGCGAGTA 57.220 39.130 0.00 0.00 0.00 2.59
3445 3542 4.667519 AATATTTAGGAACGGAGCGAGT 57.332 40.909 0.00 0.00 0.00 4.18
3446 3543 4.809426 ACAAATATTTAGGAACGGAGCGAG 59.191 41.667 0.00 0.00 0.00 5.03
3447 3544 4.761975 ACAAATATTTAGGAACGGAGCGA 58.238 39.130 0.00 0.00 0.00 4.93
3448 3545 4.809426 AGACAAATATTTAGGAACGGAGCG 59.191 41.667 0.00 0.00 0.00 5.03
3449 3546 6.679327 AAGACAAATATTTAGGAACGGAGC 57.321 37.500 0.00 0.00 0.00 4.70
3471 3568 9.936759 GTGGTAATCATTTGAAATCCCTAAAAA 57.063 29.630 0.00 0.00 0.00 1.94
3472 3569 9.094578 TGTGGTAATCATTTGAAATCCCTAAAA 57.905 29.630 0.00 0.00 0.00 1.52
3473 3570 8.657387 TGTGGTAATCATTTGAAATCCCTAAA 57.343 30.769 0.00 0.00 0.00 1.85
3474 3571 8.837099 ATGTGGTAATCATTTGAAATCCCTAA 57.163 30.769 0.00 0.00 0.00 2.69
3475 3572 9.349713 GTATGTGGTAATCATTTGAAATCCCTA 57.650 33.333 0.00 0.00 0.00 3.53
3476 3573 7.013274 CGTATGTGGTAATCATTTGAAATCCCT 59.987 37.037 0.00 0.00 0.00 4.20
3477 3574 7.138736 CGTATGTGGTAATCATTTGAAATCCC 58.861 38.462 0.00 0.00 0.00 3.85
3478 3575 7.012894 TCCGTATGTGGTAATCATTTGAAATCC 59.987 37.037 0.00 0.00 0.00 3.01
3479 3576 7.925993 TCCGTATGTGGTAATCATTTGAAATC 58.074 34.615 0.00 0.00 0.00 2.17
3480 3577 7.873719 TCCGTATGTGGTAATCATTTGAAAT 57.126 32.000 0.00 0.00 0.00 2.17
3481 3578 7.338196 ACATCCGTATGTGGTAATCATTTGAAA 59.662 33.333 0.00 0.00 44.79 2.69
3482 3579 6.826231 ACATCCGTATGTGGTAATCATTTGAA 59.174 34.615 0.00 0.00 44.79 2.69
3483 3580 6.353323 ACATCCGTATGTGGTAATCATTTGA 58.647 36.000 0.00 0.00 44.79 2.69
3484 3581 6.618287 ACATCCGTATGTGGTAATCATTTG 57.382 37.500 0.00 0.00 44.79 2.32
3488 3585 9.689501 TCTATATACATCCGTATGTGGTAATCA 57.310 33.333 3.56 0.00 45.99 2.57
3489 3586 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
3490 3587 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
3491 3588 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
3493 3590 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3511 3608 9.534565 GTGAATCTGCACTCTAAAATATGTCTA 57.465 33.333 0.00 0.00 35.91 2.59
3512 3609 8.263640 AGTGAATCTGCACTCTAAAATATGTCT 58.736 33.333 0.00 0.00 45.54 3.41
3513 3610 8.430801 AGTGAATCTGCACTCTAAAATATGTC 57.569 34.615 0.00 0.00 45.54 3.06
3526 3623 4.164294 GAGCAAAATGAGTGAATCTGCAC 58.836 43.478 0.00 0.00 39.05 4.57
3527 3624 3.192001 GGAGCAAAATGAGTGAATCTGCA 59.808 43.478 0.00 0.00 0.00 4.41
3528 3625 3.730061 CGGAGCAAAATGAGTGAATCTGC 60.730 47.826 0.00 0.00 0.00 4.26
3529 3626 3.438087 ACGGAGCAAAATGAGTGAATCTG 59.562 43.478 0.00 0.00 0.00 2.90
3530 3627 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3531 3628 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3532 3629 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3533 3630 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3534 3631 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3535 3632 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3536 3633 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3537 3634 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3538 3635 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3539 3636 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3540 3637 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3541 3638 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3542 3639 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3543 3640 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3544 3641 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3545 3642 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3546 3643 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3547 3644 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3548 3645 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3549 3646 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3550 3647 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3552 3649 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3553 3650 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3554 3651 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3555 3652 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3556 3653 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3557 3654 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3558 3655 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3559 3656 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3560 3657 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3573 3670 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3574 3671 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3575 3672 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3576 3673 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3577 3674 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3578 3675 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3579 3676 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3580 3677 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3581 3678 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3582 3679 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3583 3680 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3584 3681 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3585 3682 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
3586 3683 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3587 3684 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3588 3685 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3589 3686 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3590 3687 3.203710 TCATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
3591 3688 2.781757 TCATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
3592 3689 1.569548 TCATCTACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
3593 3690 2.068834 TCATCTACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
3594 3691 3.700038 TCTTTCATCTACTCCCTCCGTTC 59.300 47.826 0.00 0.00 0.00 3.95
3595 3692 3.709587 TCTTTCATCTACTCCCTCCGTT 58.290 45.455 0.00 0.00 0.00 4.44
3596 3693 3.383698 TCTTTCATCTACTCCCTCCGT 57.616 47.619 0.00 0.00 0.00 4.69
3597 3694 3.639094 ACATCTTTCATCTACTCCCTCCG 59.361 47.826 0.00 0.00 0.00 4.63
3598 3695 6.268847 ACATACATCTTTCATCTACTCCCTCC 59.731 42.308 0.00 0.00 0.00 4.30
3599 3696 7.296628 ACATACATCTTTCATCTACTCCCTC 57.703 40.000 0.00 0.00 0.00 4.30
3600 3697 7.345653 TCAACATACATCTTTCATCTACTCCCT 59.654 37.037 0.00 0.00 0.00 4.20
3601 3698 7.500992 TCAACATACATCTTTCATCTACTCCC 58.499 38.462 0.00 0.00 0.00 4.30
3602 3699 8.948631 TTCAACATACATCTTTCATCTACTCC 57.051 34.615 0.00 0.00 0.00 3.85
3697 3794 5.745227 ACAAACTAATGGATAGGTCTGGTG 58.255 41.667 0.00 0.00 35.81 4.17
3709 3806 9.393249 CACGGCATAAATATAACAAACTAATGG 57.607 33.333 0.00 0.00 0.00 3.16
3732 3829 6.657966 TGATACCCTAGTATTAGTCCATCACG 59.342 42.308 0.00 0.00 39.36 4.35
3824 3921 8.090214 GGGCAACATAAGTGCATCATATATTTT 58.910 33.333 0.00 0.00 39.74 1.82
3826 3923 6.720748 TGGGCAACATAAGTGCATCATATATT 59.279 34.615 0.00 0.00 39.74 1.28
4098 4199 1.000955 AGGAAGGTGAGCGTACAACAG 59.999 52.381 0.00 0.00 0.00 3.16
4406 4507 1.117994 CTCAGGGATAGCAGTGCTCA 58.882 55.000 23.64 8.83 40.44 4.26
4684 4785 0.106708 TGCGGATACAAGAGATGCCC 59.893 55.000 0.00 0.00 0.00 5.36
4970 5073 3.545481 CACGACGGCAGCGTCATC 61.545 66.667 14.47 0.00 40.44 2.92
5026 5129 1.407437 GCTCACTATTGTCCCTGGTGG 60.407 57.143 0.00 0.00 0.00 4.61
5036 5139 1.863454 GGTCGCTGATGCTCACTATTG 59.137 52.381 0.00 0.00 36.97 1.90
5043 5149 2.894387 GCCTGGTCGCTGATGCTC 60.894 66.667 0.00 0.00 36.97 4.26
5077 5183 0.456221 AAATCGTCAGCTCGTCCGAT 59.544 50.000 0.00 0.00 41.41 4.18
5080 5186 2.279469 CGAAATCGTCAGCTCGTCC 58.721 57.895 0.00 0.00 34.11 4.79
5095 5201 3.626680 CTTGCCGAGCGAGGACGAA 62.627 63.158 4.64 0.00 42.66 3.85
5108 5214 0.955919 AGCTAAACCTCACGCTTGCC 60.956 55.000 0.00 0.00 0.00 4.52
5120 5226 0.673644 TCTTCGCCAGCCAGCTAAAC 60.674 55.000 0.00 0.00 0.00 2.01
5121 5227 0.253044 ATCTTCGCCAGCCAGCTAAA 59.747 50.000 0.00 0.00 0.00 1.85
5122 5228 0.462581 CATCTTCGCCAGCCAGCTAA 60.463 55.000 0.00 0.00 0.00 3.09
5123 5229 1.144716 CATCTTCGCCAGCCAGCTA 59.855 57.895 0.00 0.00 0.00 3.32
5124 5230 2.124819 CATCTTCGCCAGCCAGCT 60.125 61.111 0.00 0.00 0.00 4.24
5131 5237 0.249120 CTGTACCCACATCTTCGCCA 59.751 55.000 0.00 0.00 33.14 5.69
5136 5242 2.308570 TGATTGGCTGTACCCACATCTT 59.691 45.455 0.00 0.00 37.83 2.40
5257 5510 4.021925 GCCTCCCTTGACGCAGGT 62.022 66.667 0.00 0.00 30.96 4.00
5259 5512 3.997064 CTCGCCTCCCTTGACGCAG 62.997 68.421 0.00 0.00 0.00 5.18
5301 5554 3.470888 CCCCCACTACCGCTCCAG 61.471 72.222 0.00 0.00 0.00 3.86
5308 5561 0.907486 GTTACTCCACCCCCACTACC 59.093 60.000 0.00 0.00 0.00 3.18
5318 5571 1.873698 TGAAGTTGCCGTTACTCCAC 58.126 50.000 0.00 0.00 0.00 4.02
5319 5572 2.215196 GTTGAAGTTGCCGTTACTCCA 58.785 47.619 0.00 0.00 0.00 3.86
5321 5574 1.193874 CGGTTGAAGTTGCCGTTACTC 59.806 52.381 0.00 0.00 40.53 2.59
5322 5575 1.202557 TCGGTTGAAGTTGCCGTTACT 60.203 47.619 9.13 0.00 45.11 2.24
5323 5576 1.070376 GTCGGTTGAAGTTGCCGTTAC 60.070 52.381 9.13 0.34 45.11 2.50
5324 5577 1.219646 GTCGGTTGAAGTTGCCGTTA 58.780 50.000 9.13 0.00 45.11 3.18
5340 5594 1.080705 GTCAGGTTGAGTCGGGTCG 60.081 63.158 0.00 0.00 0.00 4.79
5343 5597 0.679505 TTCTGTCAGGTTGAGTCGGG 59.320 55.000 0.00 0.00 0.00 5.14
5364 5618 2.035632 TGGGACAAAAAGCGGACAAAT 58.964 42.857 0.00 0.00 31.92 2.32
5381 5635 3.895102 TACGTTCGTCCGCGTTGGG 62.895 63.158 4.92 0.00 41.77 4.12
5382 5636 1.346378 AATACGTTCGTCCGCGTTGG 61.346 55.000 4.92 0.00 41.77 3.77
5383 5637 0.435769 AAATACGTTCGTCCGCGTTG 59.564 50.000 4.92 0.00 41.77 4.10
5384 5638 0.710017 GAAATACGTTCGTCCGCGTT 59.290 50.000 4.92 0.00 41.77 4.84
5385 5639 0.387112 TGAAATACGTTCGTCCGCGT 60.387 50.000 4.92 0.00 44.02 6.01
5386 5640 0.022853 GTGAAATACGTTCGTCCGCG 59.977 55.000 0.00 0.00 39.30 6.46
5387 5641 1.062258 TGTGAAATACGTTCGTCCGC 58.938 50.000 0.00 0.00 39.30 5.54
5388 5642 3.984018 AATGTGAAATACGTTCGTCCG 57.016 42.857 0.00 0.00 39.30 4.79
5389 5643 5.025986 ACAAATGTGAAATACGTTCGTCC 57.974 39.130 0.00 0.00 37.53 4.79
5403 5657 4.174786 AGGGAAAACCGGCACAAATGTG 62.175 50.000 0.00 9.17 46.96 3.21
5404 5658 0.391228 GGGAAAACCGGCACAAATGT 59.609 50.000 0.00 0.00 0.00 2.71
5405 5659 0.678950 AGGGAAAACCGGCACAAATG 59.321 50.000 0.00 0.00 46.96 2.32
5406 5660 1.419381 AAGGGAAAACCGGCACAAAT 58.581 45.000 0.00 0.00 46.96 2.32
5407 5661 1.196012 AAAGGGAAAACCGGCACAAA 58.804 45.000 0.00 0.00 46.96 2.83
5408 5662 1.196012 AAAAGGGAAAACCGGCACAA 58.804 45.000 0.00 0.00 46.96 3.33
5409 5663 1.196012 AAAAAGGGAAAACCGGCACA 58.804 45.000 0.00 0.00 46.96 4.57
5410 5664 3.455990 TTAAAAAGGGAAAACCGGCAC 57.544 42.857 0.00 0.00 46.96 5.01
5411 5665 3.007074 GGATTAAAAAGGGAAAACCGGCA 59.993 43.478 0.00 0.00 46.96 5.69
5412 5666 3.259876 AGGATTAAAAAGGGAAAACCGGC 59.740 43.478 0.00 0.00 46.96 6.13
5413 5667 4.322424 CCAGGATTAAAAAGGGAAAACCGG 60.322 45.833 0.00 0.00 46.96 5.28
5414 5668 4.282449 ACCAGGATTAAAAAGGGAAAACCG 59.718 41.667 0.00 0.00 46.96 4.44
5415 5669 5.547465 CACCAGGATTAAAAAGGGAAAACC 58.453 41.667 0.00 0.00 40.67 3.27
5416 5670 4.994852 GCACCAGGATTAAAAAGGGAAAAC 59.005 41.667 0.00 0.00 0.00 2.43
5417 5671 4.041075 GGCACCAGGATTAAAAAGGGAAAA 59.959 41.667 0.00 0.00 0.00 2.29
5418 5672 3.580895 GGCACCAGGATTAAAAAGGGAAA 59.419 43.478 0.00 0.00 0.00 3.13
5419 5673 3.169908 GGCACCAGGATTAAAAAGGGAA 58.830 45.455 0.00 0.00 0.00 3.97
5420 5674 2.815158 GGCACCAGGATTAAAAAGGGA 58.185 47.619 0.00 0.00 0.00 4.20
5421 5675 1.476488 CGGCACCAGGATTAAAAAGGG 59.524 52.381 0.00 0.00 0.00 3.95
5422 5676 1.476488 CCGGCACCAGGATTAAAAAGG 59.524 52.381 0.00 0.00 0.00 3.11
5423 5677 2.442413 TCCGGCACCAGGATTAAAAAG 58.558 47.619 0.00 0.00 31.86 2.27
5424 5678 2.588464 TCCGGCACCAGGATTAAAAA 57.412 45.000 0.00 0.00 31.86 1.94
5425 5679 2.818751 ATCCGGCACCAGGATTAAAA 57.181 45.000 0.00 0.00 45.59 1.52
5431 5685 1.198094 TCTGAAATCCGGCACCAGGA 61.198 55.000 0.00 3.32 42.69 3.86
5432 5686 0.322456 TTCTGAAATCCGGCACCAGG 60.322 55.000 0.00 0.00 0.00 4.45
5433 5687 1.755179 ATTCTGAAATCCGGCACCAG 58.245 50.000 0.00 1.34 0.00 4.00
5434 5688 2.214376 AATTCTGAAATCCGGCACCA 57.786 45.000 0.00 0.00 0.00 4.17
5435 5689 4.712122 TTTAATTCTGAAATCCGGCACC 57.288 40.909 0.00 0.00 0.00 5.01
5457 5711 7.809546 AAGACTAGACTTTTGCTAGCTTTTT 57.190 32.000 17.23 0.00 39.10 1.94
5458 5712 7.931948 TGTAAGACTAGACTTTTGCTAGCTTTT 59.068 33.333 17.23 0.00 39.10 2.27
5459 5713 7.442656 TGTAAGACTAGACTTTTGCTAGCTTT 58.557 34.615 17.23 0.00 39.10 3.51
5460 5714 6.994221 TGTAAGACTAGACTTTTGCTAGCTT 58.006 36.000 17.23 0.00 39.10 3.74
5461 5715 6.591750 TGTAAGACTAGACTTTTGCTAGCT 57.408 37.500 17.23 0.00 39.10 3.32
5462 5716 7.835634 AATGTAAGACTAGACTTTTGCTAGC 57.164 36.000 12.62 8.10 39.10 3.42
5499 5753 9.958180 AGCCTGGCTGTTTTTAATTTAATATTT 57.042 25.926 22.71 0.00 37.57 1.40
5527 5781 4.429212 TGTGGATGTCGGTCGCGG 62.429 66.667 6.13 0.00 0.00 6.46
5528 5782 2.880879 CTGTGGATGTCGGTCGCG 60.881 66.667 0.00 0.00 0.00 5.87
5529 5783 2.501223 TTCCTGTGGATGTCGGTCGC 62.501 60.000 0.00 0.00 0.00 5.19
5530 5784 0.458543 CTTCCTGTGGATGTCGGTCG 60.459 60.000 0.00 0.00 0.00 4.79
5531 5785 0.108138 CCTTCCTGTGGATGTCGGTC 60.108 60.000 0.00 0.00 0.00 4.79
5532 5786 1.983224 CCTTCCTGTGGATGTCGGT 59.017 57.895 0.00 0.00 0.00 4.69
5533 5787 1.450312 GCCTTCCTGTGGATGTCGG 60.450 63.158 0.00 0.00 0.00 4.79
5534 5788 0.742281 CAGCCTTCCTGTGGATGTCG 60.742 60.000 0.00 0.00 36.35 4.35
5535 5789 3.165606 CAGCCTTCCTGTGGATGTC 57.834 57.895 0.00 0.00 36.35 3.06
5559 5813 2.742372 AGCATCACAACGTCGGGC 60.742 61.111 0.00 0.00 0.00 6.13
5560 5814 1.354337 CTCAGCATCACAACGTCGGG 61.354 60.000 0.00 0.00 0.00 5.14
5561 5815 1.959899 GCTCAGCATCACAACGTCGG 61.960 60.000 0.00 0.00 0.00 4.79
5562 5816 1.417592 GCTCAGCATCACAACGTCG 59.582 57.895 0.00 0.00 0.00 5.12
5563 5817 1.790387 GGCTCAGCATCACAACGTC 59.210 57.895 0.00 0.00 0.00 4.34
5564 5818 3.972227 GGCTCAGCATCACAACGT 58.028 55.556 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.