Multiple sequence alignment - TraesCS4B01G163000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G163000 chr4B 100.000 3756 0 0 1 3756 330769750 330765995 0.000000e+00 6937
1 TraesCS4B01G163000 chr4B 94.440 3687 148 23 1 3675 335933217 335929576 0.000000e+00 5620
2 TraesCS4B01G163000 chr4B 90.566 106 6 4 3653 3756 349338327 349338430 1.820000e-28 137
3 TraesCS4B01G163000 chr7B 95.830 3693 136 13 1 3683 527885808 527889492 0.000000e+00 5951
4 TraesCS4B01G163000 chr7B 94.437 3685 182 16 1 3675 697876838 697880509 0.000000e+00 5648
5 TraesCS4B01G163000 chr7B 93.962 3693 172 22 6 3675 412111502 412107838 0.000000e+00 5537
6 TraesCS4B01G163000 chr6B 94.730 3681 155 15 1 3675 123357517 123361164 0.000000e+00 5686
7 TraesCS4B01G163000 chr6B 91.176 102 5 4 3656 3754 330162371 330162471 6.540000e-28 135
8 TraesCS4B01G163000 chr5B 94.714 3689 141 24 1 3675 180050651 180054299 0.000000e+00 5683
9 TraesCS4B01G163000 chr5B 94.703 3681 147 22 1 3675 531751057 531754695 0.000000e+00 5674
10 TraesCS4B01G163000 chr5B 93.852 3692 167 26 1 3675 180707027 180703379 0.000000e+00 5505
11 TraesCS4B01G163000 chr5B 92.965 3696 188 33 2 3675 291232183 291235828 0.000000e+00 5319
12 TraesCS4B01G163000 chr1B 94.595 3700 154 19 1 3683 67110162 67106492 0.000000e+00 5683
13 TraesCS4B01G163000 chr2B 93.070 3694 185 34 1 3675 24654378 24658019 0.000000e+00 5337
14 TraesCS4B01G163000 chr3B 94.680 2989 118 28 697 3675 726418463 726415506 0.000000e+00 4601
15 TraesCS4B01G163000 chr3B 93.944 2609 120 15 1 2594 139365411 139367996 0.000000e+00 3908
16 TraesCS4B01G163000 chr7D 98.810 84 1 0 3673 3756 337027977 337028060 2.340000e-32 150
17 TraesCS4B01G163000 chr3D 96.629 89 3 0 3666 3754 244359617 244359705 8.410000e-32 148
18 TraesCS4B01G163000 chr2D 97.619 84 2 0 3673 3756 269046903 269046820 1.090000e-30 145
19 TraesCS4B01G163000 chr6A 95.556 90 3 1 3668 3756 283092368 283092457 3.910000e-30 143
20 TraesCS4B01G163000 chr5D 95.556 90 2 2 3666 3754 188400139 188400051 3.910000e-30 143
21 TraesCS4B01G163000 chr5D 95.506 89 4 0 3666 3754 188429782 188429694 3.910000e-30 143
22 TraesCS4B01G163000 chr4D 94.624 93 3 1 3666 3756 202645140 202645232 3.910000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G163000 chr4B 330765995 330769750 3755 True 6937 6937 100.000 1 3756 1 chr4B.!!$R1 3755
1 TraesCS4B01G163000 chr4B 335929576 335933217 3641 True 5620 5620 94.440 1 3675 1 chr4B.!!$R2 3674
2 TraesCS4B01G163000 chr7B 527885808 527889492 3684 False 5951 5951 95.830 1 3683 1 chr7B.!!$F1 3682
3 TraesCS4B01G163000 chr7B 697876838 697880509 3671 False 5648 5648 94.437 1 3675 1 chr7B.!!$F2 3674
4 TraesCS4B01G163000 chr7B 412107838 412111502 3664 True 5537 5537 93.962 6 3675 1 chr7B.!!$R1 3669
5 TraesCS4B01G163000 chr6B 123357517 123361164 3647 False 5686 5686 94.730 1 3675 1 chr6B.!!$F1 3674
6 TraesCS4B01G163000 chr5B 180050651 180054299 3648 False 5683 5683 94.714 1 3675 1 chr5B.!!$F1 3674
7 TraesCS4B01G163000 chr5B 531751057 531754695 3638 False 5674 5674 94.703 1 3675 1 chr5B.!!$F3 3674
8 TraesCS4B01G163000 chr5B 180703379 180707027 3648 True 5505 5505 93.852 1 3675 1 chr5B.!!$R1 3674
9 TraesCS4B01G163000 chr5B 291232183 291235828 3645 False 5319 5319 92.965 2 3675 1 chr5B.!!$F2 3673
10 TraesCS4B01G163000 chr1B 67106492 67110162 3670 True 5683 5683 94.595 1 3683 1 chr1B.!!$R1 3682
11 TraesCS4B01G163000 chr2B 24654378 24658019 3641 False 5337 5337 93.070 1 3675 1 chr2B.!!$F1 3674
12 TraesCS4B01G163000 chr3B 726415506 726418463 2957 True 4601 4601 94.680 697 3675 1 chr3B.!!$R1 2978
13 TraesCS4B01G163000 chr3B 139365411 139367996 2585 False 3908 3908 93.944 1 2594 1 chr3B.!!$F1 2593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 915 0.111061 AACTCTGATGCAAGTGGCCA 59.889 50.0 0.0 0.0 43.89 5.36 F
1813 1842 0.536006 GGTGCCAGATCCTATGCCAC 60.536 60.0 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2670 2766 0.178992 CTGCCTCACAAAACCAGGGA 60.179 55.0 0.0 0.0 0.0 4.20 R
3581 3699 0.036164 TGGAACATGGGGAACACGAG 59.964 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 1.033202 AACGCCAACCCGTGTTTCTT 61.033 50.000 0.00 0.00 41.90 2.52
137 139 2.154074 GGTGACACCCCTTCCACCT 61.154 63.158 14.16 0.00 44.13 4.00
229 231 6.486657 CAGTCAAGAAGTAGGTTTTTCCATGA 59.513 38.462 0.00 0.00 39.02 3.07
308 311 1.662629 CACATGGTCTTCTGTCATCGC 59.337 52.381 0.00 0.00 0.00 4.58
498 506 6.275335 CCATACCTAGGTTTGAAATTGCATG 58.725 40.000 28.10 17.33 30.44 4.06
592 600 3.936372 ACTGCTAACTATGTCACACGT 57.064 42.857 0.00 0.00 0.00 4.49
741 766 3.510360 GCAGGGTGAAGAAGACTACTACA 59.490 47.826 0.00 0.00 0.00 2.74
887 915 0.111061 AACTCTGATGCAAGTGGCCA 59.889 50.000 0.00 0.00 43.89 5.36
1251 1279 1.070134 ACTGCTAAGGCGACTGTTTCA 59.930 47.619 0.00 0.00 42.68 2.69
1813 1842 0.536006 GGTGCCAGATCCTATGCCAC 60.536 60.000 0.00 0.00 0.00 5.01
1891 1920 1.815408 GCAGGAAGGCTGTCAAGTTCA 60.815 52.381 0.00 0.00 0.00 3.18
2207 2253 2.501316 TGCTGCACTATGTCACCTGTAT 59.499 45.455 0.00 0.00 0.00 2.29
2245 2295 1.885887 TCATTTTTCCACTCGGCAAGG 59.114 47.619 0.00 0.00 0.00 3.61
2325 2375 1.985159 AGTCCAACCAGATGGCAACTA 59.015 47.619 0.00 0.00 40.46 2.24
2326 2376 2.084546 GTCCAACCAGATGGCAACTAC 58.915 52.381 0.00 0.00 40.46 2.73
2670 2766 3.584848 GAGGATACCATTAGGAGTGCCAT 59.415 47.826 0.00 0.00 38.69 4.40
2679 2775 1.142688 AGGAGTGCCATCCCTGGTTT 61.143 55.000 0.80 0.00 45.10 3.27
2731 2827 1.658686 CCGCAGAAGACTACGAGCCT 61.659 60.000 0.00 0.00 35.18 4.58
2753 2849 3.269381 TGAATTCAGGGCCACTAAGGAAT 59.731 43.478 6.18 2.58 41.22 3.01
2787 2883 5.405873 TGTACGATATTGTCAAGCGTTTTGA 59.594 36.000 13.67 1.13 36.51 2.69
2793 2889 5.655893 ATTGTCAAGCGTTTTGAAAATGG 57.344 34.783 15.15 0.37 35.62 3.16
3053 3161 0.608640 GTCGACCTGGGTGATCTTGT 59.391 55.000 3.51 0.00 0.00 3.16
3111 3219 1.949525 GTAGTTGCATGCGGGATTGAT 59.050 47.619 14.09 0.00 0.00 2.57
3362 3476 4.735578 GCAGATGTTTCATGTGGCAATAGG 60.736 45.833 8.51 0.00 0.00 2.57
3449 3565 6.910536 AAATACACGGCAAATTTTGTTCAA 57.089 29.167 10.65 0.00 0.00 2.69
3467 3583 5.069648 TGTTCAAACATGGATGGCAACTTTA 59.930 36.000 0.00 0.00 33.17 1.85
3499 3615 3.566775 CCCCCACCCATAACCAAACATTA 60.567 47.826 0.00 0.00 0.00 1.90
3558 3676 4.548451 TCATGTGAACTCTGCTTCTCAT 57.452 40.909 0.00 0.00 35.65 2.90
3581 3699 4.519540 TTCCCTCACTTTTAAATGCAGC 57.480 40.909 0.00 0.00 0.00 5.25
3584 3702 3.426695 CCCTCACTTTTAAATGCAGCTCG 60.427 47.826 0.00 0.00 0.00 5.03
3605 3723 0.698818 GTTCCCCATGTTCCAGGAGT 59.301 55.000 0.00 0.00 0.00 3.85
3619 3737 2.165167 CAGGAGTTTGCACCACATGAT 58.835 47.619 0.00 0.00 0.00 2.45
3675 3793 5.130477 TCTGTCTTGACCTAAAGAACCAACT 59.870 40.000 0.00 0.00 37.90 3.16
3676 3794 5.123227 TGTCTTGACCTAAAGAACCAACTG 58.877 41.667 0.00 0.00 37.90 3.16
3677 3795 5.104693 TGTCTTGACCTAAAGAACCAACTGA 60.105 40.000 0.00 0.00 37.90 3.41
3679 3797 5.997746 TCTTGACCTAAAGAACCAACTGATG 59.002 40.000 0.00 0.00 33.25 3.07
3680 3798 5.560722 TGACCTAAAGAACCAACTGATGA 57.439 39.130 0.00 0.00 0.00 2.92
3681 3799 5.551233 TGACCTAAAGAACCAACTGATGAG 58.449 41.667 0.00 0.00 0.00 2.90
3683 3801 4.597507 ACCTAAAGAACCAACTGATGAGGA 59.402 41.667 0.00 0.00 0.00 3.71
3684 3802 4.938226 CCTAAAGAACCAACTGATGAGGAC 59.062 45.833 0.00 0.00 0.00 3.85
3685 3803 4.437682 AAAGAACCAACTGATGAGGACA 57.562 40.909 0.00 0.00 0.00 4.02
3686 3804 4.647564 AAGAACCAACTGATGAGGACAT 57.352 40.909 0.00 0.00 39.67 3.06
3701 3819 7.807977 ATGAGGACATCAATACCATTGTTAC 57.192 36.000 0.00 0.00 42.53 2.50
3702 3820 6.716284 TGAGGACATCAATACCATTGTTACA 58.284 36.000 0.00 0.00 34.02 2.41
3703 3821 6.597672 TGAGGACATCAATACCATTGTTACAC 59.402 38.462 0.00 0.00 34.02 2.90
3704 3822 5.885912 AGGACATCAATACCATTGTTACACC 59.114 40.000 0.00 0.00 0.00 4.16
3705 3823 5.067283 GGACATCAATACCATTGTTACACCC 59.933 44.000 0.00 0.00 0.00 4.61
3706 3824 5.575157 ACATCAATACCATTGTTACACCCA 58.425 37.500 0.00 0.00 0.00 4.51
3707 3825 5.417580 ACATCAATACCATTGTTACACCCAC 59.582 40.000 0.00 0.00 0.00 4.61
3708 3826 4.004314 TCAATACCATTGTTACACCCACG 58.996 43.478 0.00 0.00 0.00 4.94
3709 3827 2.476126 TACCATTGTTACACCCACGG 57.524 50.000 0.00 0.00 0.00 4.94
3710 3828 0.891904 ACCATTGTTACACCCACGGC 60.892 55.000 0.00 0.00 0.00 5.68
3711 3829 1.591504 CCATTGTTACACCCACGGCC 61.592 60.000 0.00 0.00 0.00 6.13
3712 3830 1.303806 ATTGTTACACCCACGGCCC 60.304 57.895 0.00 0.00 0.00 5.80
3713 3831 2.774687 ATTGTTACACCCACGGCCCC 62.775 60.000 0.00 0.00 0.00 5.80
3714 3832 3.643554 GTTACACCCACGGCCCCT 61.644 66.667 0.00 0.00 0.00 4.79
3715 3833 3.642503 TTACACCCACGGCCCCTG 61.643 66.667 0.00 0.00 0.00 4.45
3724 3842 2.031163 CGGCCCCTGCTGCTATAC 59.969 66.667 0.00 0.00 36.98 1.47
3725 3843 2.807107 CGGCCCCTGCTGCTATACA 61.807 63.158 0.00 0.00 36.98 2.29
3726 3844 1.763770 GGCCCCTGCTGCTATACAT 59.236 57.895 0.00 0.00 37.74 2.29
3727 3845 0.984230 GGCCCCTGCTGCTATACATA 59.016 55.000 0.00 0.00 37.74 2.29
3728 3846 1.561542 GGCCCCTGCTGCTATACATAT 59.438 52.381 0.00 0.00 37.74 1.78
3729 3847 2.025887 GGCCCCTGCTGCTATACATATT 60.026 50.000 0.00 0.00 37.74 1.28
3730 3848 3.012518 GCCCCTGCTGCTATACATATTG 58.987 50.000 0.00 0.00 33.53 1.90
3731 3849 3.614092 CCCCTGCTGCTATACATATTGG 58.386 50.000 0.00 0.00 0.00 3.16
3732 3850 3.264193 CCCCTGCTGCTATACATATTGGA 59.736 47.826 0.00 0.00 0.00 3.53
3733 3851 4.256920 CCCTGCTGCTATACATATTGGAC 58.743 47.826 0.00 0.00 0.00 4.02
3734 3852 4.256920 CCTGCTGCTATACATATTGGACC 58.743 47.826 0.00 0.00 0.00 4.46
3735 3853 4.263025 CCTGCTGCTATACATATTGGACCA 60.263 45.833 0.00 0.00 0.00 4.02
3736 3854 5.303259 TGCTGCTATACATATTGGACCAA 57.697 39.130 9.92 9.92 0.00 3.67
3737 3855 5.879763 TGCTGCTATACATATTGGACCAAT 58.120 37.500 23.00 23.00 37.80 3.16
3738 3856 6.306199 TGCTGCTATACATATTGGACCAATT 58.694 36.000 24.48 9.87 35.54 2.32
3739 3857 7.457561 TGCTGCTATACATATTGGACCAATTA 58.542 34.615 24.48 11.77 35.54 1.40
3740 3858 7.390440 TGCTGCTATACATATTGGACCAATTAC 59.610 37.037 24.48 6.74 35.54 1.89
3741 3859 7.607991 GCTGCTATACATATTGGACCAATTACT 59.392 37.037 24.48 9.69 35.54 2.24
3747 3865 7.380423 ACATATTGGACCAATTACTAGAGCT 57.620 36.000 24.48 0.00 35.54 4.09
3748 3866 7.445945 ACATATTGGACCAATTACTAGAGCTC 58.554 38.462 24.48 5.27 35.54 4.09
3749 3867 4.386867 TTGGACCAATTACTAGAGCTCG 57.613 45.455 8.37 0.00 0.00 5.03
3750 3868 2.100916 TGGACCAATTACTAGAGCTCGC 59.899 50.000 8.37 0.00 0.00 5.03
3751 3869 2.386249 GACCAATTACTAGAGCTCGCG 58.614 52.381 8.37 0.00 0.00 5.87
3752 3870 1.132588 CCAATTACTAGAGCTCGCGC 58.867 55.000 8.37 0.00 0.00 6.86
3753 3871 1.536072 CCAATTACTAGAGCTCGCGCA 60.536 52.381 8.75 0.00 39.10 6.09
3754 3872 2.398498 CAATTACTAGAGCTCGCGCAT 58.602 47.619 8.75 0.00 39.10 4.73
3755 3873 2.057503 ATTACTAGAGCTCGCGCATG 57.942 50.000 8.75 0.00 39.10 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 1.754226 GGCACCTTTGTTCAACCAAGA 59.246 47.619 2.88 0.00 0.00 3.02
137 139 1.376543 GTCGTACGAGGAGATGACCA 58.623 55.000 20.18 0.00 0.00 4.02
229 231 8.915057 AATATAGCACTATGTCAATGAAAGCT 57.085 30.769 0.30 0.00 0.00 3.74
268 271 2.279741 GACAAGCTGAACGGATGCATA 58.720 47.619 0.00 0.00 0.00 3.14
368 374 9.702253 TTGCCATATAAAAACCAATAGGAGTTA 57.298 29.630 0.00 0.00 38.69 2.24
387 394 1.202806 GCCTAGATGCCAGTTGCCATA 60.203 52.381 0.00 0.00 40.16 2.74
460 467 2.308570 AGGTATGGGATGAGCACACAAA 59.691 45.455 0.00 0.00 28.49 2.83
498 506 7.428020 TGATAAAAATGTCTAATCTGCCATGC 58.572 34.615 0.00 0.00 0.00 4.06
592 600 4.927267 ATGTAAGGGGAACATGAGTTGA 57.073 40.909 0.00 0.00 38.30 3.18
741 766 4.189580 ATATGCTTGGCCCCGCGT 62.190 61.111 4.92 12.11 0.00 6.01
887 915 2.579201 CAGTCGGCGGAGATGGTT 59.421 61.111 7.21 0.00 0.00 3.67
1282 1310 1.213537 CTGTTGATTGCTTGCGGGG 59.786 57.895 0.00 0.00 0.00 5.73
1598 1627 0.533308 GGGCGTGTTGTCAGTGGTAA 60.533 55.000 0.00 0.00 0.00 2.85
1721 1750 1.340399 TGGGTGCCTCTCATGCCTAG 61.340 60.000 0.00 0.00 0.00 3.02
1813 1842 0.390209 CCCGGGAAAGCAAATGCAAG 60.390 55.000 18.48 0.00 45.16 4.01
1891 1920 2.180276 ACCTTGAACTATCGGCTCTGT 58.820 47.619 0.00 0.00 0.00 3.41
2225 2274 1.885887 CCTTGCCGAGTGGAAAAATGA 59.114 47.619 0.00 0.00 37.49 2.57
2245 2295 3.125316 GTGCTAACTACACTTGCCATGTC 59.875 47.826 0.00 0.00 35.12 3.06
2325 2375 0.478072 TTGCCATCTGGTTGGACTGT 59.522 50.000 0.00 0.00 39.25 3.55
2326 2376 0.883833 GTTGCCATCTGGTTGGACTG 59.116 55.000 0.00 0.00 39.25 3.51
2441 2535 3.969312 TGAGAAGATAGGGTGCATGATGA 59.031 43.478 0.00 0.00 0.00 2.92
2670 2766 0.178992 CTGCCTCACAAAACCAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
2679 2775 0.835971 TACCCTCTGCTGCCTCACAA 60.836 55.000 0.00 0.00 0.00 3.33
2731 2827 2.274542 TCCTTAGTGGCCCTGAATTCA 58.725 47.619 8.12 8.12 35.26 2.57
2753 2849 4.212716 ACAATATCGTACAGCTGGGTCTA 58.787 43.478 19.93 3.30 0.00 2.59
2787 2883 0.613012 GCTGCTGGACCTCCCATTTT 60.613 55.000 0.00 0.00 45.57 1.82
2793 2889 2.749441 GCTTGCTGCTGGACCTCC 60.749 66.667 0.00 0.00 38.95 4.30
3053 3161 2.204461 TTTGGCCTCACGGACTCGA 61.204 57.895 3.32 0.00 39.94 4.04
3111 3219 8.623030 CACACATCCATATGATTGTTGATGTAA 58.377 33.333 17.30 0.00 40.42 2.41
3322 3436 1.129251 CTGCCACATAAACAGAGTGCG 59.871 52.381 0.00 0.00 33.10 5.34
3362 3476 1.724582 AAAGTCAGGTTGCACGGCAC 61.725 55.000 0.00 0.00 38.71 5.01
3449 3565 6.357579 TGAAATAAAGTTGCCATCCATGTT 57.642 33.333 0.00 0.00 0.00 2.71
3467 3583 1.462426 TGGGTGGGGGTAGTTGAAAT 58.538 50.000 0.00 0.00 0.00 2.17
3499 3615 8.739972 GGGACAAACAAAAGTAGAATCATGTAT 58.260 33.333 0.00 0.00 0.00 2.29
3517 3635 2.262423 AGAACAGCAGAGGGACAAAC 57.738 50.000 0.00 0.00 0.00 2.93
3558 3676 5.070313 AGCTGCATTTAAAAGTGAGGGAAAA 59.930 36.000 1.02 0.00 0.00 2.29
3581 3699 0.036164 TGGAACATGGGGAACACGAG 59.964 55.000 0.00 0.00 0.00 4.18
3584 3702 0.404040 TCCTGGAACATGGGGAACAC 59.596 55.000 0.00 0.00 38.20 3.32
3605 3723 2.287487 CGTGTTGATCATGTGGTGCAAA 60.287 45.455 0.00 0.00 0.00 3.68
3649 3767 6.187727 TGGTTCTTTAGGTCAAGACAGATT 57.812 37.500 2.29 0.00 32.28 2.40
3677 3795 7.283127 GTGTAACAATGGTATTGATGTCCTCAT 59.717 37.037 8.41 0.00 36.32 2.90
3679 3797 6.038271 GGTGTAACAATGGTATTGATGTCCTC 59.962 42.308 8.41 0.00 39.98 3.71
3680 3798 5.885912 GGTGTAACAATGGTATTGATGTCCT 59.114 40.000 8.41 0.00 39.98 3.85
3681 3799 5.067283 GGGTGTAACAATGGTATTGATGTCC 59.933 44.000 8.41 4.55 39.98 4.02
3683 3801 5.417580 GTGGGTGTAACAATGGTATTGATGT 59.582 40.000 8.41 0.00 39.98 3.06
3684 3802 5.448496 CGTGGGTGTAACAATGGTATTGATG 60.448 44.000 8.41 0.00 39.98 3.07
3685 3803 4.638421 CGTGGGTGTAACAATGGTATTGAT 59.362 41.667 8.41 0.00 39.98 2.57
3686 3804 4.004314 CGTGGGTGTAACAATGGTATTGA 58.996 43.478 8.41 0.00 39.98 2.57
3687 3805 3.127895 CCGTGGGTGTAACAATGGTATTG 59.872 47.826 0.28 0.28 39.98 1.90
3688 3806 3.349022 CCGTGGGTGTAACAATGGTATT 58.651 45.455 0.00 0.00 39.98 1.89
3689 3807 2.942306 GCCGTGGGTGTAACAATGGTAT 60.942 50.000 0.00 0.00 39.98 2.73
3690 3808 1.611148 GCCGTGGGTGTAACAATGGTA 60.611 52.381 0.00 0.00 39.98 3.25
3691 3809 0.891904 GCCGTGGGTGTAACAATGGT 60.892 55.000 0.00 0.00 39.98 3.55
3692 3810 1.591504 GGCCGTGGGTGTAACAATGG 61.592 60.000 0.00 0.00 39.98 3.16
3693 3811 1.591504 GGGCCGTGGGTGTAACAATG 61.592 60.000 0.00 0.00 39.98 2.82
3694 3812 1.303806 GGGCCGTGGGTGTAACAAT 60.304 57.895 0.00 0.00 39.98 2.71
3695 3813 2.113562 GGGCCGTGGGTGTAACAA 59.886 61.111 0.00 0.00 39.98 2.83
3696 3814 3.956314 GGGGCCGTGGGTGTAACA 61.956 66.667 0.00 0.00 39.98 2.41
3697 3815 3.643554 AGGGGCCGTGGGTGTAAC 61.644 66.667 0.00 0.00 0.00 2.50
3698 3816 3.642503 CAGGGGCCGTGGGTGTAA 61.643 66.667 18.37 0.00 0.00 2.41
3705 3823 2.807107 TATAGCAGCAGGGGCCGTG 61.807 63.158 21.55 21.55 42.56 4.94
3706 3824 2.445845 TATAGCAGCAGGGGCCGT 60.446 61.111 0.00 0.00 42.56 5.68
3707 3825 2.031163 GTATAGCAGCAGGGGCCG 59.969 66.667 0.00 0.00 42.56 6.13
3708 3826 0.984230 TATGTATAGCAGCAGGGGCC 59.016 55.000 0.00 0.00 42.56 5.80
3709 3827 3.012518 CAATATGTATAGCAGCAGGGGC 58.987 50.000 0.00 0.00 41.61 5.80
3710 3828 3.264193 TCCAATATGTATAGCAGCAGGGG 59.736 47.826 0.00 0.00 0.00 4.79
3711 3829 4.256920 GTCCAATATGTATAGCAGCAGGG 58.743 47.826 0.00 0.00 0.00 4.45
3712 3830 4.256920 GGTCCAATATGTATAGCAGCAGG 58.743 47.826 0.00 0.00 0.00 4.85
3713 3831 4.898320 TGGTCCAATATGTATAGCAGCAG 58.102 43.478 0.00 0.00 0.00 4.24
3714 3832 4.972751 TGGTCCAATATGTATAGCAGCA 57.027 40.909 0.00 0.00 0.00 4.41
3715 3833 6.824305 AATTGGTCCAATATGTATAGCAGC 57.176 37.500 17.63 0.00 32.43 5.25
3721 3839 9.105844 AGCTCTAGTAATTGGTCCAATATGTAT 57.894 33.333 17.63 4.33 32.43 2.29
3722 3840 8.492415 AGCTCTAGTAATTGGTCCAATATGTA 57.508 34.615 17.63 4.07 32.43 2.29
3723 3841 7.380423 AGCTCTAGTAATTGGTCCAATATGT 57.620 36.000 17.63 5.07 32.43 2.29
3724 3842 6.587990 CGAGCTCTAGTAATTGGTCCAATATG 59.412 42.308 17.63 6.69 32.43 1.78
3725 3843 6.692486 CGAGCTCTAGTAATTGGTCCAATAT 58.308 40.000 17.63 9.38 32.43 1.28
3726 3844 5.509163 GCGAGCTCTAGTAATTGGTCCAATA 60.509 44.000 17.63 1.11 32.43 1.90
3727 3845 4.740934 GCGAGCTCTAGTAATTGGTCCAAT 60.741 45.833 11.59 11.59 35.39 3.16
3728 3846 3.430374 GCGAGCTCTAGTAATTGGTCCAA 60.430 47.826 12.85 6.80 0.00 3.53
3729 3847 2.100916 GCGAGCTCTAGTAATTGGTCCA 59.899 50.000 12.85 0.00 0.00 4.02
3730 3848 2.745102 GCGAGCTCTAGTAATTGGTCC 58.255 52.381 12.85 0.00 0.00 4.46
3731 3849 2.386249 CGCGAGCTCTAGTAATTGGTC 58.614 52.381 12.85 0.00 0.00 4.02
3732 3850 2.493713 CGCGAGCTCTAGTAATTGGT 57.506 50.000 12.85 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.