Multiple sequence alignment - TraesCS4B01G162900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G162900 chr4B 100.000 5426 0 0 1 5426 329817906 329812481 0.000000e+00 10021.0
1 TraesCS4B01G162900 chr4B 91.908 346 26 2 5078 5421 647617608 647617953 2.940000e-132 483.0
2 TraesCS4B01G162900 chr4B 74.516 310 47 20 341 639 669603020 669603308 7.430000e-19 106.0
3 TraesCS4B01G162900 chr4B 81.022 137 20 5 726 858 418354858 418354992 2.670000e-18 104.0
4 TraesCS4B01G162900 chr4D 93.302 3001 93 36 1 2921 197775700 197772728 0.000000e+00 4329.0
5 TraesCS4B01G162900 chr4D 96.900 2097 42 8 2916 5000 197772385 197770300 0.000000e+00 3491.0
6 TraesCS4B01G162900 chr4D 96.970 66 2 0 3304 3369 450203791 450203726 1.600000e-20 111.0
7 TraesCS4B01G162900 chr4D 83.505 97 9 4 3304 3394 69190389 69190484 3.480000e-12 84.2
8 TraesCS4B01G162900 chr4D 87.755 49 3 2 723 768 57386235 57386283 3.000000e-03 54.7
9 TraesCS4B01G162900 chr4A 94.415 2668 94 26 640 3262 327253593 327256250 0.000000e+00 4050.0
10 TraesCS4B01G162900 chr4A 94.444 1422 50 16 3296 4715 327259583 327260977 0.000000e+00 2161.0
11 TraesCS4B01G162900 chr4A 82.527 641 96 10 9 642 303105621 303104990 2.860000e-152 549.0
12 TraesCS4B01G162900 chr4A 82.492 634 94 10 9 635 303044591 303043968 1.720000e-149 540.0
13 TraesCS4B01G162900 chr4A 81.043 633 87 13 9 635 311577853 311578458 1.770000e-129 473.0
14 TraesCS4B01G162900 chr4A 91.538 130 11 0 4871 5000 327277975 327278104 4.320000e-41 180.0
15 TraesCS4B01G162900 chr2A 85.959 641 69 4 1 640 350836827 350837447 0.000000e+00 665.0
16 TraesCS4B01G162900 chr2A 95.455 66 3 0 3304 3369 569191476 569191411 7.430000e-19 106.0
17 TraesCS4B01G162900 chr2D 85.647 641 70 5 1 640 271497605 271496986 0.000000e+00 654.0
18 TraesCS4B01G162900 chr2D 82.233 636 107 6 9 640 87675619 87674986 1.330000e-150 544.0
19 TraesCS4B01G162900 chr2D 91.852 135 10 1 3603 3736 271524200 271524334 2.580000e-43 187.0
20 TraesCS4B01G162900 chr2D 91.852 135 9 2 3603 3736 271527344 271527477 2.580000e-43 187.0
21 TraesCS4B01G162900 chr2D 85.294 102 12 3 740 839 187042755 187042855 9.620000e-18 102.0
22 TraesCS4B01G162900 chr2D 87.692 65 4 3 723 783 161989596 161989532 7.540000e-09 73.1
23 TraesCS4B01G162900 chr5D 84.270 623 88 9 9 625 29456112 29456730 2.800000e-167 599.0
24 TraesCS4B01G162900 chr5D 87.749 351 37 5 5074 5421 216823045 216822698 6.540000e-109 405.0
25 TraesCS4B01G162900 chr5D 87.500 104 12 1 735 837 275145215 275145112 9.550000e-23 119.0
26 TraesCS4B01G162900 chr5D 97.143 35 1 0 734 768 565813823 565813857 5.870000e-05 60.2
27 TraesCS4B01G162900 chr3D 82.683 641 97 10 9 640 553473378 553474013 1.710000e-154 556.0
28 TraesCS4B01G162900 chr3B 93.296 358 19 4 5073 5425 780351981 780351624 1.730000e-144 523.0
29 TraesCS4B01G162900 chr3B 89.503 362 28 6 5072 5426 120211957 120211599 2.980000e-122 449.0
30 TraesCS4B01G162900 chr3B 80.063 316 51 10 237 548 464070118 464069811 1.970000e-54 224.0
31 TraesCS4B01G162900 chr3B 87.805 164 12 3 3582 3744 323324962 323324806 9.280000e-43 185.0
32 TraesCS4B01G162900 chr3B 79.615 260 39 11 384 635 422325408 422325661 2.010000e-39 174.0
33 TraesCS4B01G162900 chr3B 85.507 69 3 4 3331 3392 674477252 674477184 1.260000e-06 65.8
34 TraesCS4B01G162900 chr5B 91.899 358 23 6 5074 5425 448230109 448230466 3.770000e-136 496.0
35 TraesCS4B01G162900 chr5B 74.052 343 57 19 310 640 522476627 522476949 1.600000e-20 111.0
36 TraesCS4B01G162900 chr5B 97.561 41 1 0 740 780 622987462 622987422 2.710000e-08 71.3
37 TraesCS4B01G162900 chr6B 91.365 359 26 2 5073 5426 307171756 307172114 2.270000e-133 486.0
38 TraesCS4B01G162900 chr6B 79.430 316 52 11 238 548 672195731 672195424 1.530000e-50 211.0
39 TraesCS4B01G162900 chr6B 87.059 85 11 0 741 825 710780102 710780018 4.470000e-16 97.1
40 TraesCS4B01G162900 chr1B 91.228 342 21 6 5081 5421 12378028 12378361 1.780000e-124 457.0
41 TraesCS4B01G162900 chr1B 91.781 73 6 0 3297 3369 493871873 493871945 9.620000e-18 102.0
42 TraesCS4B01G162900 chr1B 92.500 40 3 0 740 779 176145236 176145197 2.110000e-04 58.4
43 TraesCS4B01G162900 chr7D 88.000 350 37 4 5074 5421 528783820 528784166 5.060000e-110 409.0
44 TraesCS4B01G162900 chr7D 91.852 135 8 3 3603 3735 353915038 353914905 9.280000e-43 185.0
45 TraesCS4B01G162900 chr7D 96.970 66 2 0 3304 3369 119897077 119897012 1.600000e-20 111.0
46 TraesCS4B01G162900 chr7D 89.011 91 7 3 3281 3369 419793222 419793133 5.750000e-20 110.0
47 TraesCS4B01G162900 chr7D 91.525 59 3 1 723 779 119748412 119748470 4.510000e-11 80.5
48 TraesCS4B01G162900 chr3A 87.393 349 37 6 5075 5421 539360489 539360832 1.420000e-105 394.0
49 TraesCS4B01G162900 chr3A 84.211 76 10 1 721 794 106515934 106515859 7.540000e-09 73.1
50 TraesCS4B01G162900 chr5A 92.143 140 10 1 3603 3741 444030282 444030143 4.290000e-46 196.0
51 TraesCS4B01G162900 chr5A 82.222 135 22 2 733 866 6597379 6597512 1.240000e-21 115.0
52 TraesCS4B01G162900 chr7A 93.130 131 8 1 3603 3732 391897563 391897433 1.990000e-44 191.0
53 TraesCS4B01G162900 chr7A 89.773 88 6 3 3282 3367 513221020 513221106 5.750000e-20 110.0
54 TraesCS4B01G162900 chr7A 80.597 134 24 2 734 866 103151090 103151222 9.620000e-18 102.0
55 TraesCS4B01G162900 chr7B 92.481 133 7 2 3603 3732 297411049 297411181 2.580000e-43 187.0
56 TraesCS4B01G162900 chr7B 90.909 44 2 1 726 767 17216048 17216091 2.110000e-04 58.4
57 TraesCS4B01G162900 chr6D 81.250 144 23 3 726 866 298453569 298453711 4.440000e-21 113.0
58 TraesCS4B01G162900 chr6D 87.719 57 4 2 726 779 6013551 6013607 4.540000e-06 63.9
59 TraesCS4B01G162900 chr6D 97.143 35 1 0 734 768 302061516 302061482 5.870000e-05 60.2
60 TraesCS4B01G162900 chr6D 100.000 29 0 0 740 768 472278635 472278607 3.000000e-03 54.7
61 TraesCS4B01G162900 chr2B 94.030 67 4 0 3303 3369 764537698 764537632 9.620000e-18 102.0
62 TraesCS4B01G162900 chr2B 87.719 57 5 1 725 779 727714950 727715006 1.260000e-06 65.8
63 TraesCS4B01G162900 chr1A 85.366 82 12 0 734 815 125994468 125994387 9.680000e-13 86.1
64 TraesCS4B01G162900 chrUn 100.000 29 0 0 740 768 306018049 306018077 3.000000e-03 54.7
65 TraesCS4B01G162900 chrUn 100.000 29 0 0 740 768 324544450 324544478 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G162900 chr4B 329812481 329817906 5425 True 10021.0 10021 100.0000 1 5426 1 chr4B.!!$R1 5425
1 TraesCS4B01G162900 chr4D 197770300 197775700 5400 True 3910.0 4329 95.1010 1 5000 2 chr4D.!!$R2 4999
2 TraesCS4B01G162900 chr4A 327253593 327260977 7384 False 3105.5 4050 94.4295 640 4715 2 chr4A.!!$F3 4075
3 TraesCS4B01G162900 chr4A 303104990 303105621 631 True 549.0 549 82.5270 9 642 1 chr4A.!!$R2 633
4 TraesCS4B01G162900 chr4A 303043968 303044591 623 True 540.0 540 82.4920 9 635 1 chr4A.!!$R1 626
5 TraesCS4B01G162900 chr4A 311577853 311578458 605 False 473.0 473 81.0430 9 635 1 chr4A.!!$F1 626
6 TraesCS4B01G162900 chr2A 350836827 350837447 620 False 665.0 665 85.9590 1 640 1 chr2A.!!$F1 639
7 TraesCS4B01G162900 chr2D 271496986 271497605 619 True 654.0 654 85.6470 1 640 1 chr2D.!!$R3 639
8 TraesCS4B01G162900 chr2D 87674986 87675619 633 True 544.0 544 82.2330 9 640 1 chr2D.!!$R1 631
9 TraesCS4B01G162900 chr5D 29456112 29456730 618 False 599.0 599 84.2700 9 625 1 chr5D.!!$F1 616
10 TraesCS4B01G162900 chr3D 553473378 553474013 635 False 556.0 556 82.6830 9 640 1 chr3D.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 243 2.148768 GAATTGGTTCGTCCGGTTTCT 58.851 47.619 0.00 0.0 39.52 2.52 F
1096 1152 1.451936 GGCGCTATCCCTGTTCCAT 59.548 57.895 7.64 0.0 0.00 3.41 F
2813 2906 0.625849 GCTGATTTGGAGGGAGGGAA 59.374 55.000 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1482 0.898320 AACTACGAGACTGCAGCCAT 59.102 50.0 15.27 0.00 0.00 4.40 R
2824 2917 0.908198 AATCGAGGAGAAAGCAGCCT 59.092 50.0 0.00 0.00 33.97 4.58 R
4499 8279 0.386838 GGTATGCTCCCAATTGCAGC 59.613 55.0 16.85 16.85 42.74 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 5.590259 GGGTGACAACATAGTGAAGCAATAT 59.410 40.000 0.00 0.00 0.00 1.28
235 243 2.148768 GAATTGGTTCGTCCGGTTTCT 58.851 47.619 0.00 0.00 39.52 2.52
243 251 2.662866 TCGTCCGGTTTCTATGGAGAT 58.337 47.619 0.00 0.00 31.04 2.75
342 351 5.185828 GGGTATGAGTTGAGGCAGAATTTTT 59.814 40.000 0.00 0.00 0.00 1.94
411 422 3.820467 TCCTGACATTGTGCGAGAATTTT 59.180 39.130 0.00 0.00 0.00 1.82
476 488 7.618502 AGTTGGATAGTCGCTCTATATGTAG 57.381 40.000 0.00 0.00 39.22 2.74
488 500 6.521477 CGCTCTATATGTAGACATCGTCAAAG 59.479 42.308 0.00 0.00 37.76 2.77
489 501 6.306837 GCTCTATATGTAGACATCGTCAAAGC 59.693 42.308 0.00 0.00 37.76 3.51
490 502 6.678878 TCTATATGTAGACATCGTCAAAGCC 58.321 40.000 0.00 0.00 37.76 4.35
494 506 3.994392 TGTAGACATCGTCAAAGCCTTTC 59.006 43.478 0.00 0.00 34.60 2.62
552 564 8.627208 ACTTCAATTATTGTCAGATTGTGTCT 57.373 30.769 4.77 0.00 37.80 3.41
657 687 3.422343 GCGCATGTATCAGTTATTCGCTC 60.422 47.826 0.30 0.00 37.44 5.03
825 856 8.452989 AAGAGCGTAAATTCATTCATTTTGTC 57.547 30.769 0.00 0.00 0.00 3.18
826 857 7.820648 AGAGCGTAAATTCATTCATTTTGTCT 58.179 30.769 0.00 0.00 0.00 3.41
1096 1152 1.451936 GGCGCTATCCCTGTTCCAT 59.548 57.895 7.64 0.00 0.00 3.41
1108 1164 2.290323 CCTGTTCCATTTTCCGTCTCCT 60.290 50.000 0.00 0.00 0.00 3.69
1237 1293 3.341823 CCTCTCATTCCCTCAACTTGTG 58.658 50.000 0.00 0.00 0.00 3.33
1828 1921 8.087982 AGATAATATTTATCAACACCTGTGCG 57.912 34.615 9.30 0.00 0.00 5.34
1918 2011 2.887151 AAGCTAATGTTGCTGGAGGT 57.113 45.000 0.00 0.00 41.03 3.85
2549 2642 4.225042 TGCTATATTTGATGCGGGATAGGT 59.775 41.667 0.00 0.00 0.00 3.08
2722 2815 6.921486 TTCATAAGTGGTAAGACACACCTA 57.079 37.500 0.00 0.00 43.72 3.08
2806 2899 1.171308 CTGTGTGGCTGATTTGGAGG 58.829 55.000 0.00 0.00 0.00 4.30
2813 2906 0.625849 GCTGATTTGGAGGGAGGGAA 59.374 55.000 0.00 0.00 0.00 3.97
2824 2917 2.844348 GAGGGAGGGAAATGTGGTTAGA 59.156 50.000 0.00 0.00 0.00 2.10
3262 6446 5.586243 ACAGTACTGCAAGCTATTGGTATTG 59.414 40.000 22.90 0.00 37.60 1.90
3757 7526 2.288961 TTTCATCCTACCTCGTTCGC 57.711 50.000 0.00 0.00 0.00 4.70
4141 7921 6.475076 CACAAGAAAGATCTACGATTCTCAGG 59.525 42.308 7.65 4.55 33.77 3.86
4472 8252 6.091441 GTCCACATCTGAAGTGAATCAGTTAC 59.909 42.308 14.09 0.00 45.65 2.50
4478 8258 3.987868 TGAAGTGAATCAGTTACGTCTGC 59.012 43.478 2.94 0.00 35.63 4.26
4499 8279 5.218885 TGCGTAATGTTTGACTTGAAATGG 58.781 37.500 0.00 0.00 0.00 3.16
4685 8465 9.117183 GTGAAGTACTTTTTCTTTAGAGGGAAA 57.883 33.333 10.02 0.00 0.00 3.13
4757 8537 6.426587 AGCCCTAGAATTATTTCTTGCTGAA 58.573 36.000 5.26 0.00 42.29 3.02
4795 8575 9.570468 ACTGATTATATTTTCATGCTCATGACT 57.430 29.630 11.71 3.72 46.49 3.41
4822 8602 8.390921 TCCAGGGTAAGAAGATTATTTTCTTGT 58.609 33.333 17.50 0.00 42.95 3.16
4949 8729 6.595772 AAAATCAATCTAGATGCGTCACTC 57.404 37.500 5.86 0.00 0.00 3.51
4956 8736 1.114627 AGATGCGTCACTCCATGCTA 58.885 50.000 8.99 0.00 0.00 3.49
4963 8743 2.159627 CGTCACTCCATGCTAAAACACC 59.840 50.000 0.00 0.00 0.00 4.16
4968 8748 1.001068 TCCATGCTAAAACACCGTCGA 59.999 47.619 0.00 0.00 0.00 4.20
5010 8790 2.831333 GTGATGATCACTAGTGGCTGG 58.169 52.381 22.48 0.00 43.73 4.85
5011 8791 1.764723 TGATGATCACTAGTGGCTGGG 59.235 52.381 22.48 0.00 0.00 4.45
5012 8792 1.071385 GATGATCACTAGTGGCTGGGG 59.929 57.143 22.48 0.00 0.00 4.96
5013 8793 0.982852 TGATCACTAGTGGCTGGGGG 60.983 60.000 22.48 0.00 0.00 5.40
5032 8812 4.101790 CGCCGTTGGTGTGCCATC 62.102 66.667 0.00 0.00 45.56 3.51
5033 8813 2.672996 GCCGTTGGTGTGCCATCT 60.673 61.111 0.00 0.00 45.56 2.90
5034 8814 2.981560 GCCGTTGGTGTGCCATCTG 61.982 63.158 0.00 0.00 45.56 2.90
5035 8815 1.302431 CCGTTGGTGTGCCATCTGA 60.302 57.895 0.00 0.00 45.56 3.27
5036 8816 1.300971 CCGTTGGTGTGCCATCTGAG 61.301 60.000 0.00 0.00 45.56 3.35
5037 8817 0.320683 CGTTGGTGTGCCATCTGAGA 60.321 55.000 0.00 0.00 45.56 3.27
5038 8818 1.446907 GTTGGTGTGCCATCTGAGAG 58.553 55.000 0.00 0.00 45.56 3.20
5039 8819 0.325933 TTGGTGTGCCATCTGAGAGG 59.674 55.000 0.00 0.00 45.56 3.69
5046 8826 2.131405 CCATCTGAGAGGCATCCGT 58.869 57.895 0.00 0.00 0.00 4.69
5047 8827 1.332195 CCATCTGAGAGGCATCCGTA 58.668 55.000 0.00 0.00 0.00 4.02
5048 8828 1.000283 CCATCTGAGAGGCATCCGTAC 60.000 57.143 0.00 0.00 0.00 3.67
5049 8829 0.955178 ATCTGAGAGGCATCCGTACG 59.045 55.000 8.69 8.69 0.00 3.67
5050 8830 1.101635 TCTGAGAGGCATCCGTACGG 61.102 60.000 28.66 28.66 0.00 4.02
5051 8831 1.379443 TGAGAGGCATCCGTACGGT 60.379 57.895 32.16 17.76 36.47 4.83
5052 8832 1.065928 GAGAGGCATCCGTACGGTG 59.934 63.158 32.16 27.37 36.47 4.94
5053 8833 2.585247 GAGGCATCCGTACGGTGC 60.585 66.667 34.35 34.35 39.68 5.01
5056 8836 2.890474 GCATCCGTACGGTGCCTG 60.890 66.667 33.21 25.85 36.79 4.85
5057 8837 2.202878 CATCCGTACGGTGCCTGG 60.203 66.667 32.16 13.40 36.47 4.45
5058 8838 2.682494 ATCCGTACGGTGCCTGGT 60.682 61.111 32.16 9.35 36.47 4.00
5059 8839 1.380246 ATCCGTACGGTGCCTGGTA 60.380 57.895 32.16 12.32 36.47 3.25
5060 8840 1.389609 ATCCGTACGGTGCCTGGTAG 61.390 60.000 32.16 4.34 36.47 3.18
5061 8841 2.493030 CGTACGGTGCCTGGTAGG 59.507 66.667 7.57 0.00 38.80 3.18
5062 8842 2.897972 GTACGGTGCCTGGTAGGG 59.102 66.667 0.00 0.00 35.37 3.53
5079 8859 2.473457 GGCAACGCCCTTTTATCGA 58.527 52.632 0.00 0.00 44.06 3.59
5080 8860 0.806241 GGCAACGCCCTTTTATCGAA 59.194 50.000 0.00 0.00 44.06 3.71
5081 8861 1.200484 GGCAACGCCCTTTTATCGAAA 59.800 47.619 0.00 0.00 44.06 3.46
5082 8862 2.351932 GGCAACGCCCTTTTATCGAAAA 60.352 45.455 0.00 0.00 44.06 2.29
5083 8863 3.310246 GCAACGCCCTTTTATCGAAAAA 58.690 40.909 0.00 0.00 34.16 1.94
5084 8864 3.363724 GCAACGCCCTTTTATCGAAAAAG 59.636 43.478 18.17 18.17 34.16 2.27
5091 8871 5.992489 CCTTTTATCGAAAAAGGCTTTCG 57.008 39.130 25.26 13.73 46.56 3.46
5092 8872 5.458015 CCTTTTATCGAAAAAGGCTTTCGT 58.542 37.500 25.26 4.30 46.56 3.85
5093 8873 5.567915 CCTTTTATCGAAAAAGGCTTTCGTC 59.432 40.000 25.26 12.48 46.56 4.20
5094 8874 6.567891 CCTTTTATCGAAAAAGGCTTTCGTCT 60.568 38.462 25.26 8.32 46.56 4.18
5095 8875 8.300993 CCTTTTATCGAAAAAGGCTTTCGTCTC 61.301 40.741 25.26 7.04 46.56 3.36
5096 8876 2.212922 CGAAAAAGGCTTTCGTCTCG 57.787 50.000 13.76 14.44 44.25 4.04
5097 8877 1.721804 CGAAAAAGGCTTTCGTCTCGC 60.722 52.381 13.76 0.00 44.25 5.03
5098 8878 1.531578 GAAAAAGGCTTTCGTCTCGCT 59.468 47.619 13.76 0.00 0.00 4.93
5099 8879 1.594331 AAAAGGCTTTCGTCTCGCTT 58.406 45.000 13.76 0.00 0.00 4.68
5100 8880 1.594331 AAAGGCTTTCGTCTCGCTTT 58.406 45.000 6.68 0.00 0.00 3.51
5101 8881 2.450609 AAGGCTTTCGTCTCGCTTTA 57.549 45.000 0.00 0.00 0.00 1.85
5102 8882 2.674796 AGGCTTTCGTCTCGCTTTAT 57.325 45.000 0.00 0.00 0.00 1.40
5103 8883 3.795623 AGGCTTTCGTCTCGCTTTATA 57.204 42.857 0.00 0.00 0.00 0.98
5104 8884 4.119442 AGGCTTTCGTCTCGCTTTATAA 57.881 40.909 0.00 0.00 0.00 0.98
5105 8885 4.501071 AGGCTTTCGTCTCGCTTTATAAA 58.499 39.130 0.00 0.00 0.00 1.40
5106 8886 5.116882 AGGCTTTCGTCTCGCTTTATAAAT 58.883 37.500 0.00 0.00 0.00 1.40
5107 8887 6.278363 AGGCTTTCGTCTCGCTTTATAAATA 58.722 36.000 0.00 0.00 0.00 1.40
5108 8888 6.759827 AGGCTTTCGTCTCGCTTTATAAATAA 59.240 34.615 0.00 0.00 0.00 1.40
5109 8889 7.279313 AGGCTTTCGTCTCGCTTTATAAATAAA 59.721 33.333 0.00 0.00 0.00 1.40
5121 8901 7.820044 CTTTATAAATAAAGCAAACCGCCAA 57.180 32.000 9.01 0.00 41.69 4.52
5122 8902 7.820044 TTTATAAATAAAGCAAACCGCCAAG 57.180 32.000 0.00 0.00 44.04 3.61
5123 8903 5.652994 ATAAATAAAGCAAACCGCCAAGA 57.347 34.783 0.00 0.00 44.04 3.02
5124 8904 3.575965 AATAAAGCAAACCGCCAAGAG 57.424 42.857 0.00 0.00 44.04 2.85
5125 8905 0.596082 TAAAGCAAACCGCCAAGAGC 59.404 50.000 0.00 0.00 44.04 4.09
5126 8906 1.391157 AAAGCAAACCGCCAAGAGCA 61.391 50.000 0.00 0.00 44.04 4.26
5127 8907 1.391157 AAGCAAACCGCCAAGAGCAA 61.391 50.000 0.00 0.00 44.04 3.91
5128 8908 1.661509 GCAAACCGCCAAGAGCAAC 60.662 57.895 0.00 0.00 44.04 4.17
5129 8909 1.732917 CAAACCGCCAAGAGCAACA 59.267 52.632 0.00 0.00 44.04 3.33
5130 8910 0.594796 CAAACCGCCAAGAGCAACAC 60.595 55.000 0.00 0.00 44.04 3.32
5131 8911 1.034838 AAACCGCCAAGAGCAACACA 61.035 50.000 0.00 0.00 44.04 3.72
5132 8912 0.823356 AACCGCCAAGAGCAACACAT 60.823 50.000 0.00 0.00 44.04 3.21
5133 8913 0.036164 ACCGCCAAGAGCAACACATA 59.964 50.000 0.00 0.00 44.04 2.29
5134 8914 1.340017 ACCGCCAAGAGCAACACATAT 60.340 47.619 0.00 0.00 44.04 1.78
5135 8915 2.093181 ACCGCCAAGAGCAACACATATA 60.093 45.455 0.00 0.00 44.04 0.86
5136 8916 2.942376 CCGCCAAGAGCAACACATATAA 59.058 45.455 0.00 0.00 44.04 0.98
5137 8917 3.002656 CCGCCAAGAGCAACACATATAAG 59.997 47.826 0.00 0.00 44.04 1.73
5138 8918 3.002656 CGCCAAGAGCAACACATATAAGG 59.997 47.826 0.00 0.00 44.04 2.69
5139 8919 4.199310 GCCAAGAGCAACACATATAAGGA 58.801 43.478 0.00 0.00 42.97 3.36
5140 8920 4.035675 GCCAAGAGCAACACATATAAGGAC 59.964 45.833 0.00 0.00 42.97 3.85
5141 8921 5.431765 CCAAGAGCAACACATATAAGGACT 58.568 41.667 0.00 0.00 0.00 3.85
5142 8922 6.582636 CCAAGAGCAACACATATAAGGACTA 58.417 40.000 0.00 0.00 0.00 2.59
5143 8923 6.703607 CCAAGAGCAACACATATAAGGACTAG 59.296 42.308 0.00 0.00 0.00 2.57
5144 8924 7.268586 CAAGAGCAACACATATAAGGACTAGT 58.731 38.462 0.00 0.00 0.00 2.57
5145 8925 7.425224 AGAGCAACACATATAAGGACTAGTT 57.575 36.000 0.00 0.00 0.00 2.24
5146 8926 7.493367 AGAGCAACACATATAAGGACTAGTTC 58.507 38.462 0.00 0.00 0.00 3.01
5147 8927 7.124298 AGAGCAACACATATAAGGACTAGTTCA 59.876 37.037 3.42 0.00 0.00 3.18
5148 8928 7.268586 AGCAACACATATAAGGACTAGTTCAG 58.731 38.462 3.42 0.00 0.00 3.02
5149 8929 6.018669 GCAACACATATAAGGACTAGTTCAGC 60.019 42.308 3.42 0.00 0.00 4.26
5150 8930 6.791867 ACACATATAAGGACTAGTTCAGCA 57.208 37.500 3.42 0.00 0.00 4.41
5151 8931 6.574350 ACACATATAAGGACTAGTTCAGCAC 58.426 40.000 3.42 0.00 0.00 4.40
5152 8932 6.154534 ACACATATAAGGACTAGTTCAGCACA 59.845 38.462 3.42 0.00 0.00 4.57
5153 8933 6.477033 CACATATAAGGACTAGTTCAGCACAC 59.523 42.308 3.42 0.00 0.00 3.82
5154 8934 6.154534 ACATATAAGGACTAGTTCAGCACACA 59.845 38.462 3.42 0.00 0.00 3.72
5155 8935 2.821991 AGGACTAGTTCAGCACACAC 57.178 50.000 3.42 0.00 0.00 3.82
5156 8936 2.039418 AGGACTAGTTCAGCACACACA 58.961 47.619 3.42 0.00 0.00 3.72
5157 8937 2.135933 GGACTAGTTCAGCACACACAC 58.864 52.381 0.00 0.00 0.00 3.82
5158 8938 1.787155 GACTAGTTCAGCACACACACG 59.213 52.381 0.00 0.00 0.00 4.49
5159 8939 0.508641 CTAGTTCAGCACACACACGC 59.491 55.000 0.00 0.00 0.00 5.34
5160 8940 0.179097 TAGTTCAGCACACACACGCA 60.179 50.000 0.00 0.00 0.00 5.24
5161 8941 1.297598 GTTCAGCACACACACGCAC 60.298 57.895 0.00 0.00 0.00 5.34
5162 8942 2.468670 TTCAGCACACACACGCACC 61.469 57.895 0.00 0.00 0.00 5.01
5163 8943 3.952675 CAGCACACACACGCACCC 61.953 66.667 0.00 0.00 0.00 4.61
5164 8944 4.481617 AGCACACACACGCACCCA 62.482 61.111 0.00 0.00 0.00 4.51
5165 8945 3.513438 GCACACACACGCACCCAA 61.513 61.111 0.00 0.00 0.00 4.12
5166 8946 2.715005 CACACACACGCACCCAAG 59.285 61.111 0.00 0.00 0.00 3.61
5167 8947 2.112198 CACACACACGCACCCAAGT 61.112 57.895 0.00 0.00 0.00 3.16
5168 8948 1.817941 ACACACACGCACCCAAGTC 60.818 57.895 0.00 0.00 0.00 3.01
5169 8949 1.523711 CACACACGCACCCAAGTCT 60.524 57.895 0.00 0.00 0.00 3.24
5170 8950 1.227556 ACACACGCACCCAAGTCTC 60.228 57.895 0.00 0.00 0.00 3.36
5171 8951 1.227527 CACACGCACCCAAGTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
5172 8952 1.227556 ACACGCACCCAAGTCTCAC 60.228 57.895 0.00 0.00 0.00 3.51
5173 8953 1.227527 CACGCACCCAAGTCTCACA 60.228 57.895 0.00 0.00 0.00 3.58
5174 8954 1.069765 ACGCACCCAAGTCTCACAG 59.930 57.895 0.00 0.00 0.00 3.66
5175 8955 1.669115 CGCACCCAAGTCTCACAGG 60.669 63.158 0.00 0.00 0.00 4.00
5176 8956 1.754745 GCACCCAAGTCTCACAGGA 59.245 57.895 0.00 0.00 0.00 3.86
5177 8957 0.108585 GCACCCAAGTCTCACAGGAA 59.891 55.000 0.00 0.00 0.00 3.36
5178 8958 1.879796 GCACCCAAGTCTCACAGGAAG 60.880 57.143 0.00 0.00 0.00 3.46
5179 8959 1.694150 CACCCAAGTCTCACAGGAAGA 59.306 52.381 0.00 0.00 0.00 2.87
5180 8960 2.104792 CACCCAAGTCTCACAGGAAGAA 59.895 50.000 0.00 0.00 0.00 2.52
5181 8961 2.370189 ACCCAAGTCTCACAGGAAGAAG 59.630 50.000 0.00 0.00 0.00 2.85
5182 8962 2.370189 CCCAAGTCTCACAGGAAGAAGT 59.630 50.000 0.00 0.00 0.00 3.01
5183 8963 3.578716 CCCAAGTCTCACAGGAAGAAGTA 59.421 47.826 0.00 0.00 0.00 2.24
5184 8964 4.561105 CCAAGTCTCACAGGAAGAAGTAC 58.439 47.826 0.00 0.00 0.00 2.73
5185 8965 4.039245 CCAAGTCTCACAGGAAGAAGTACA 59.961 45.833 0.00 0.00 0.00 2.90
5186 8966 5.279708 CCAAGTCTCACAGGAAGAAGTACAT 60.280 44.000 0.00 0.00 0.00 2.29
5187 8967 6.071334 CCAAGTCTCACAGGAAGAAGTACATA 60.071 42.308 0.00 0.00 0.00 2.29
5188 8968 6.767524 AGTCTCACAGGAAGAAGTACATAG 57.232 41.667 0.00 0.00 0.00 2.23
5189 8969 5.654650 AGTCTCACAGGAAGAAGTACATAGG 59.345 44.000 0.00 0.00 0.00 2.57
5190 8970 5.419471 GTCTCACAGGAAGAAGTACATAGGT 59.581 44.000 0.00 0.00 0.00 3.08
5191 8971 6.017192 TCTCACAGGAAGAAGTACATAGGTT 58.983 40.000 0.00 0.00 0.00 3.50
5192 8972 6.153000 TCTCACAGGAAGAAGTACATAGGTTC 59.847 42.308 0.00 0.00 0.00 3.62
5193 8973 6.017192 TCACAGGAAGAAGTACATAGGTTCT 58.983 40.000 0.00 0.00 31.71 3.01
5194 8974 6.071334 TCACAGGAAGAAGTACATAGGTTCTG 60.071 42.308 0.00 0.00 30.84 3.02
5195 8975 5.112686 CAGGAAGAAGTACATAGGTTCTGC 58.887 45.833 0.00 0.00 30.84 4.26
5196 8976 5.026790 AGGAAGAAGTACATAGGTTCTGCT 58.973 41.667 0.00 0.00 32.04 4.24
5197 8977 5.105146 AGGAAGAAGTACATAGGTTCTGCTG 60.105 44.000 0.00 0.00 31.22 4.41
5198 8978 5.105310 GGAAGAAGTACATAGGTTCTGCTGA 60.105 44.000 0.00 0.00 31.22 4.26
5199 8979 5.590530 AGAAGTACATAGGTTCTGCTGAG 57.409 43.478 0.00 0.00 29.75 3.35
5200 8980 4.404073 AGAAGTACATAGGTTCTGCTGAGG 59.596 45.833 0.00 0.00 29.75 3.86
5201 8981 3.034635 AGTACATAGGTTCTGCTGAGGG 58.965 50.000 0.00 0.00 0.00 4.30
5202 8982 0.543749 ACATAGGTTCTGCTGAGGGC 59.456 55.000 0.00 0.00 42.22 5.19
5212 8992 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
5213 8993 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
5214 8994 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
5215 8995 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
5216 8996 0.250467 GAGGGCACAGCTCAACAAGA 60.250 55.000 0.00 0.00 0.00 3.02
5217 8997 0.536006 AGGGCACAGCTCAACAAGAC 60.536 55.000 0.00 0.00 0.00 3.01
5218 8998 0.819259 GGGCACAGCTCAACAAGACA 60.819 55.000 0.00 0.00 0.00 3.41
5219 8999 1.024271 GGCACAGCTCAACAAGACAA 58.976 50.000 0.00 0.00 0.00 3.18
5220 9000 1.405105 GGCACAGCTCAACAAGACAAA 59.595 47.619 0.00 0.00 0.00 2.83
5221 9001 2.159254 GGCACAGCTCAACAAGACAAAA 60.159 45.455 0.00 0.00 0.00 2.44
5222 9002 3.510719 GCACAGCTCAACAAGACAAAAA 58.489 40.909 0.00 0.00 0.00 1.94
5243 9023 2.721425 AAAAGAAACAGGACGGTCCA 57.279 45.000 27.87 0.00 39.61 4.02
5244 9024 2.256117 AAAGAAACAGGACGGTCCAG 57.744 50.000 27.87 22.46 39.61 3.86
5245 9025 1.420430 AAGAAACAGGACGGTCCAGA 58.580 50.000 27.87 0.00 39.61 3.86
5246 9026 0.969894 AGAAACAGGACGGTCCAGAG 59.030 55.000 27.87 18.80 39.61 3.35
5247 9027 0.966920 GAAACAGGACGGTCCAGAGA 59.033 55.000 27.87 0.00 39.61 3.10
5248 9028 0.680061 AAACAGGACGGTCCAGAGAC 59.320 55.000 27.87 0.78 39.61 3.36
5249 9029 0.469331 AACAGGACGGTCCAGAGACA 60.469 55.000 27.87 0.00 45.48 3.41
5250 9030 1.179814 ACAGGACGGTCCAGAGACAC 61.180 60.000 27.87 0.00 45.48 3.67
5251 9031 1.972223 AGGACGGTCCAGAGACACG 60.972 63.158 27.87 0.00 45.48 4.49
5252 9032 2.266627 GGACGGTCCAGAGACACGT 61.267 63.158 22.10 8.69 45.99 4.49
5253 9033 3.352524 ACGGTCCAGAGACACGTC 58.647 61.111 0.00 0.00 45.48 4.34
5254 9034 2.266627 ACGGTCCAGAGACACGTCC 61.267 63.158 0.00 0.00 45.48 4.79
5255 9035 2.265904 CGGTCCAGAGACACGTCCA 61.266 63.158 0.00 0.00 45.48 4.02
5256 9036 1.802337 CGGTCCAGAGACACGTCCAA 61.802 60.000 0.00 0.00 45.48 3.53
5257 9037 0.391597 GGTCCAGAGACACGTCCAAA 59.608 55.000 0.00 0.00 45.48 3.28
5258 9038 1.605712 GGTCCAGAGACACGTCCAAAG 60.606 57.143 0.00 0.00 45.48 2.77
5259 9039 1.068741 GTCCAGAGACACGTCCAAAGT 59.931 52.381 0.00 0.00 42.99 2.66
5260 9040 1.340248 TCCAGAGACACGTCCAAAGTC 59.660 52.381 0.00 0.00 0.00 3.01
5261 9041 1.341531 CCAGAGACACGTCCAAAGTCT 59.658 52.381 5.27 5.27 44.71 3.24
5262 9042 2.557056 CCAGAGACACGTCCAAAGTCTA 59.443 50.000 5.56 0.00 42.29 2.59
5263 9043 3.005472 CCAGAGACACGTCCAAAGTCTAA 59.995 47.826 5.56 0.00 42.29 2.10
5264 9044 4.322049 CCAGAGACACGTCCAAAGTCTAAT 60.322 45.833 5.56 0.00 42.29 1.73
5265 9045 4.859798 CAGAGACACGTCCAAAGTCTAATC 59.140 45.833 5.56 0.00 42.29 1.75
5266 9046 4.523173 AGAGACACGTCCAAAGTCTAATCA 59.477 41.667 5.56 0.00 42.29 2.57
5267 9047 4.810790 AGACACGTCCAAAGTCTAATCAG 58.189 43.478 3.84 0.00 40.59 2.90
5268 9048 3.926616 ACACGTCCAAAGTCTAATCAGG 58.073 45.455 0.00 0.00 0.00 3.86
5269 9049 3.576982 ACACGTCCAAAGTCTAATCAGGA 59.423 43.478 0.00 0.00 0.00 3.86
5270 9050 4.223032 ACACGTCCAAAGTCTAATCAGGAT 59.777 41.667 0.00 0.00 0.00 3.24
5271 9051 4.806247 CACGTCCAAAGTCTAATCAGGATC 59.194 45.833 0.00 0.00 0.00 3.36
5272 9052 4.141914 ACGTCCAAAGTCTAATCAGGATCC 60.142 45.833 2.48 2.48 0.00 3.36
5273 9053 4.372656 GTCCAAAGTCTAATCAGGATCCG 58.627 47.826 5.98 1.36 0.00 4.18
5274 9054 3.388024 TCCAAAGTCTAATCAGGATCCGG 59.612 47.826 5.98 5.68 0.00 5.14
5275 9055 3.134458 CAAAGTCTAATCAGGATCCGGC 58.866 50.000 7.07 0.00 0.00 6.13
5276 9056 0.962489 AGTCTAATCAGGATCCGGCG 59.038 55.000 7.07 0.00 0.00 6.46
5277 9057 0.038159 GTCTAATCAGGATCCGGCGG 60.038 60.000 22.51 22.51 0.00 6.13
5278 9058 0.469331 TCTAATCAGGATCCGGCGGT 60.469 55.000 27.32 13.58 0.00 5.68
5279 9059 0.319900 CTAATCAGGATCCGGCGGTG 60.320 60.000 27.32 16.99 0.00 4.94
5280 9060 1.754380 TAATCAGGATCCGGCGGTGG 61.754 60.000 27.32 11.85 0.00 4.61
5294 9074 4.821589 GTGGCGGAGGAAGCGGAG 62.822 72.222 0.00 0.00 35.00 4.63
5299 9079 4.516195 GGAGGAAGCGGAGGCGAC 62.516 72.222 0.00 0.00 46.35 5.19
5300 9080 3.760035 GAGGAAGCGGAGGCGACA 61.760 66.667 0.00 0.00 46.35 4.35
5301 9081 3.708220 GAGGAAGCGGAGGCGACAG 62.708 68.421 0.00 0.00 46.35 3.51
5302 9082 4.821589 GGAAGCGGAGGCGACAGG 62.822 72.222 0.00 0.00 46.35 4.00
5313 9093 4.129737 CGACAGGCGGACGACCAT 62.130 66.667 3.31 0.00 36.03 3.55
5314 9094 2.202756 GACAGGCGGACGACCATC 60.203 66.667 4.48 0.00 35.59 3.51
5315 9095 4.129737 ACAGGCGGACGACCATCG 62.130 66.667 4.48 0.00 46.93 3.84
5316 9096 3.822192 CAGGCGGACGACCATCGA 61.822 66.667 5.04 0.00 43.74 3.59
5317 9097 3.518998 AGGCGGACGACCATCGAG 61.519 66.667 5.04 0.00 43.74 4.04
5320 9100 4.907034 CGGACGACCATCGAGCGG 62.907 72.222 5.04 2.16 43.74 5.52
5321 9101 3.515286 GGACGACCATCGAGCGGA 61.515 66.667 10.50 0.00 43.74 5.54
5322 9102 2.024871 GACGACCATCGAGCGGAG 59.975 66.667 10.50 6.53 43.74 4.63
5323 9103 3.471244 GACGACCATCGAGCGGAGG 62.471 68.421 10.50 4.39 43.74 4.30
5324 9104 3.518998 CGACCATCGAGCGGAGGT 61.519 66.667 10.50 6.83 43.74 3.85
5335 9115 4.796231 CGGAGGTCGGCGGTGAAG 62.796 72.222 7.21 0.00 34.75 3.02
5336 9116 4.452733 GGAGGTCGGCGGTGAAGG 62.453 72.222 7.21 0.00 0.00 3.46
5337 9117 3.692406 GAGGTCGGCGGTGAAGGT 61.692 66.667 7.21 0.00 0.00 3.50
5338 9118 2.283388 AGGTCGGCGGTGAAGGTA 60.283 61.111 7.21 0.00 0.00 3.08
5339 9119 2.183555 GGTCGGCGGTGAAGGTAG 59.816 66.667 7.21 0.00 0.00 3.18
5340 9120 2.345760 GGTCGGCGGTGAAGGTAGA 61.346 63.158 7.21 0.00 0.00 2.59
5341 9121 1.139095 GTCGGCGGTGAAGGTAGAG 59.861 63.158 7.21 0.00 0.00 2.43
5342 9122 1.001764 TCGGCGGTGAAGGTAGAGA 60.002 57.895 7.21 0.00 0.00 3.10
5343 9123 0.395311 TCGGCGGTGAAGGTAGAGAT 60.395 55.000 7.21 0.00 0.00 2.75
5344 9124 0.249073 CGGCGGTGAAGGTAGAGATG 60.249 60.000 0.00 0.00 0.00 2.90
5345 9125 1.112113 GGCGGTGAAGGTAGAGATGA 58.888 55.000 0.00 0.00 0.00 2.92
5346 9126 1.202428 GGCGGTGAAGGTAGAGATGAC 60.202 57.143 0.00 0.00 0.00 3.06
5347 9127 1.534175 GCGGTGAAGGTAGAGATGACG 60.534 57.143 0.00 0.00 0.00 4.35
5348 9128 1.743958 CGGTGAAGGTAGAGATGACGT 59.256 52.381 0.00 0.00 0.00 4.34
5349 9129 2.223294 CGGTGAAGGTAGAGATGACGTC 60.223 54.545 9.11 9.11 0.00 4.34
5350 9130 2.099427 GGTGAAGGTAGAGATGACGTCC 59.901 54.545 14.12 0.00 0.00 4.79
5351 9131 2.099427 GTGAAGGTAGAGATGACGTCCC 59.901 54.545 14.12 4.80 0.00 4.46
5352 9132 1.334243 GAAGGTAGAGATGACGTCCCG 59.666 57.143 14.12 0.00 0.00 5.14
5353 9133 0.465824 AGGTAGAGATGACGTCCCGG 60.466 60.000 14.12 0.00 0.00 5.73
5354 9134 0.750911 GGTAGAGATGACGTCCCGGT 60.751 60.000 14.12 0.00 0.00 5.28
5355 9135 0.662085 GTAGAGATGACGTCCCGGTC 59.338 60.000 14.12 6.19 37.45 4.79
5356 9136 0.465097 TAGAGATGACGTCCCGGTCC 60.465 60.000 14.12 0.00 36.07 4.46
5357 9137 1.753463 GAGATGACGTCCCGGTCCT 60.753 63.158 14.12 0.75 36.07 3.85
5358 9138 2.005960 GAGATGACGTCCCGGTCCTG 62.006 65.000 14.12 0.00 36.07 3.86
5359 9139 2.036731 ATGACGTCCCGGTCCTGA 59.963 61.111 14.12 0.00 36.07 3.86
5360 9140 2.005960 GATGACGTCCCGGTCCTGAG 62.006 65.000 14.12 0.00 36.07 3.35
5361 9141 3.450115 GACGTCCCGGTCCTGAGG 61.450 72.222 3.51 0.00 0.00 3.86
5369 9149 3.081409 GGTCCTGAGGGCGGCTAA 61.081 66.667 9.56 0.00 0.00 3.09
5370 9150 2.501610 GTCCTGAGGGCGGCTAAG 59.498 66.667 9.56 4.00 0.00 2.18
5371 9151 3.470888 TCCTGAGGGCGGCTAAGC 61.471 66.667 9.56 0.00 0.00 3.09
5372 9152 4.899239 CCTGAGGGCGGCTAAGCG 62.899 72.222 9.56 0.00 38.18 4.68
5373 9153 4.899239 CTGAGGGCGGCTAAGCGG 62.899 72.222 9.56 0.00 38.18 5.52
5391 9171 2.265739 CCGCCAGAGCTGCAAGTA 59.734 61.111 1.02 0.00 36.60 2.24
5392 9172 1.812922 CCGCCAGAGCTGCAAGTAG 60.813 63.158 1.02 0.00 36.60 2.57
5393 9173 2.459442 CGCCAGAGCTGCAAGTAGC 61.459 63.158 1.02 1.67 44.01 3.58
5394 9174 2.111582 GCCAGAGCTGCAAGTAGCC 61.112 63.158 6.53 0.00 44.76 3.93
5395 9175 1.297689 CCAGAGCTGCAAGTAGCCA 59.702 57.895 6.53 0.00 44.76 4.75
5396 9176 0.743701 CCAGAGCTGCAAGTAGCCAG 60.744 60.000 6.53 0.00 44.76 4.85
5397 9177 0.248565 CAGAGCTGCAAGTAGCCAGA 59.751 55.000 6.53 0.00 44.76 3.86
5398 9178 0.248843 AGAGCTGCAAGTAGCCAGAC 59.751 55.000 6.53 0.00 44.76 3.51
5399 9179 0.036952 GAGCTGCAAGTAGCCAGACA 60.037 55.000 6.53 0.00 44.76 3.41
5400 9180 0.036577 AGCTGCAAGTAGCCAGACAG 60.037 55.000 6.53 0.00 44.76 3.51
5401 9181 0.321122 GCTGCAAGTAGCCAGACAGT 60.321 55.000 0.00 0.00 44.83 3.55
5402 9182 1.879796 GCTGCAAGTAGCCAGACAGTT 60.880 52.381 0.00 0.00 44.83 3.16
5403 9183 2.498167 CTGCAAGTAGCCAGACAGTTT 58.502 47.619 0.00 0.00 44.83 2.66
5404 9184 2.221169 TGCAAGTAGCCAGACAGTTTG 58.779 47.619 0.00 0.00 44.83 2.93
5405 9185 2.158827 TGCAAGTAGCCAGACAGTTTGA 60.159 45.455 0.00 0.00 44.83 2.69
5406 9186 2.878406 GCAAGTAGCCAGACAGTTTGAA 59.122 45.455 0.00 0.00 37.23 2.69
5407 9187 3.058639 GCAAGTAGCCAGACAGTTTGAAG 60.059 47.826 0.00 0.00 37.23 3.02
5408 9188 4.380531 CAAGTAGCCAGACAGTTTGAAGA 58.619 43.478 0.00 0.00 0.00 2.87
5409 9189 4.264460 AGTAGCCAGACAGTTTGAAGAG 57.736 45.455 0.00 0.00 0.00 2.85
5410 9190 3.898123 AGTAGCCAGACAGTTTGAAGAGA 59.102 43.478 0.00 0.00 0.00 3.10
5411 9191 3.399440 AGCCAGACAGTTTGAAGAGAG 57.601 47.619 0.00 0.00 0.00 3.20
5412 9192 1.803555 GCCAGACAGTTTGAAGAGAGC 59.196 52.381 0.00 0.00 0.00 4.09
5413 9193 2.064762 CCAGACAGTTTGAAGAGAGCG 58.935 52.381 0.00 0.00 0.00 5.03
5414 9194 2.546795 CCAGACAGTTTGAAGAGAGCGT 60.547 50.000 0.00 0.00 0.00 5.07
5415 9195 2.728839 CAGACAGTTTGAAGAGAGCGTC 59.271 50.000 0.00 0.00 0.00 5.19
5416 9196 2.362397 AGACAGTTTGAAGAGAGCGTCA 59.638 45.455 0.00 0.00 0.00 4.35
5417 9197 2.728839 GACAGTTTGAAGAGAGCGTCAG 59.271 50.000 0.00 0.00 34.09 3.51
5418 9198 2.101582 ACAGTTTGAAGAGAGCGTCAGT 59.898 45.455 0.00 0.00 34.09 3.41
5419 9199 3.318275 ACAGTTTGAAGAGAGCGTCAGTA 59.682 43.478 0.00 0.00 34.09 2.74
5420 9200 3.917380 CAGTTTGAAGAGAGCGTCAGTAG 59.083 47.826 0.00 0.00 34.09 2.57
5421 9201 3.821600 AGTTTGAAGAGAGCGTCAGTAGA 59.178 43.478 0.00 0.00 34.09 2.59
5422 9202 4.461081 AGTTTGAAGAGAGCGTCAGTAGAT 59.539 41.667 0.00 0.00 34.09 1.98
5423 9203 4.624336 TTGAAGAGAGCGTCAGTAGATC 57.376 45.455 0.00 0.00 34.09 2.75
5424 9204 2.609916 TGAAGAGAGCGTCAGTAGATCG 59.390 50.000 0.00 0.00 0.00 3.69
5425 9205 1.588674 AGAGAGCGTCAGTAGATCGG 58.411 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.071479 GTTGTCACCCAGCTCGAAATTA 58.929 45.455 0.00 0.00 0.00 1.40
69 70 1.880027 GTTGTCACCCAGCTCGAAATT 59.120 47.619 0.00 0.00 0.00 1.82
104 105 0.865111 CAACACTTCGGTCATTGCGA 59.135 50.000 0.00 0.00 0.00 5.10
301 309 5.535783 TCATACCCATCCTGCACAAATAATG 59.464 40.000 0.00 0.00 0.00 1.90
368 378 6.149973 CAGGAATGTTGTCTTTAGCTTCATCA 59.850 38.462 0.00 0.00 0.00 3.07
476 488 4.489679 AAAGAAAGGCTTTGACGATGTC 57.510 40.909 18.79 0.00 44.89 3.06
525 537 8.394971 ACACAATCTGACAATAATTGAAGTCA 57.605 30.769 10.31 7.96 38.56 3.41
542 554 9.950496 AGAAAATAGATAACACAGACACAATCT 57.050 29.630 0.00 0.00 38.66 2.40
607 619 5.465056 CACGGGCTTTTGAAATATGTTGTTT 59.535 36.000 0.00 0.00 0.00 2.83
635 647 2.476619 AGCGAATAACTGATACATGCGC 59.523 45.455 0.00 0.00 41.93 6.09
802 833 9.722056 ATAGACAAAATGAATGAATTTACGCTC 57.278 29.630 0.00 0.00 0.00 5.03
826 857 9.981460 AGATATCATCAGTGTGGACTACATATA 57.019 33.333 5.32 0.00 42.24 0.86
866 899 3.328382 TCGGTGGTGAAAACCATCTAG 57.672 47.619 6.59 0.00 42.41 2.43
868 901 2.305927 AGATCGGTGGTGAAAACCATCT 59.694 45.455 6.59 0.48 42.41 2.90
869 902 2.711542 AGATCGGTGGTGAAAACCATC 58.288 47.619 0.11 0.00 42.41 3.51
870 903 2.879103 AGATCGGTGGTGAAAACCAT 57.121 45.000 0.11 0.00 42.41 3.55
873 928 6.984474 TCTGATATAAGATCGGTGGTGAAAAC 59.016 38.462 0.00 0.00 0.00 2.43
892 947 4.649218 TGGAATCATCTTGTCCGTCTGATA 59.351 41.667 0.00 0.00 33.87 2.15
1096 1152 1.823169 CGTGGGGAGGAGACGGAAAA 61.823 60.000 0.00 0.00 0.00 2.29
1383 1448 1.639298 GCTCGCACTGGACCATGAAC 61.639 60.000 0.00 0.00 0.00 3.18
1416 1482 0.898320 AACTACGAGACTGCAGCCAT 59.102 50.000 15.27 0.00 0.00 4.40
1828 1921 1.733912 TGCTCTGCATTGTCACGAATC 59.266 47.619 0.00 0.00 31.71 2.52
1918 2011 1.941294 GGACGCAGAGACTTCGATCTA 59.059 52.381 0.00 0.00 0.00 1.98
2549 2642 9.029243 CAAGTGAATAAGTTTGCAAATGTTGTA 57.971 29.630 16.21 4.20 0.00 2.41
2722 2815 5.613329 TCTGATTGCCAAAAAGCAGAAAAT 58.387 33.333 2.64 0.00 46.50 1.82
2806 2899 2.684038 GCCTCTAACCACATTTCCCTCC 60.684 54.545 0.00 0.00 0.00 4.30
2813 2906 2.887151 AAGCAGCCTCTAACCACATT 57.113 45.000 0.00 0.00 0.00 2.71
2824 2917 0.908198 AATCGAGGAGAAAGCAGCCT 59.092 50.000 0.00 0.00 33.97 4.58
3262 6446 4.583871 AGTCAAGAACTCCCATTGTCATC 58.416 43.478 0.00 0.00 30.02 2.92
3407 7176 6.293735 GCAGTGTAGTTGCCACAACTAAAATA 60.294 38.462 18.87 6.40 34.84 1.40
3803 7572 4.378149 GCAGATAGCATGATGAATGAACGG 60.378 45.833 0.00 0.00 44.79 4.44
4141 7921 4.700700 AGAACTACTTGTGTGGTACCAAC 58.299 43.478 18.31 16.84 36.88 3.77
4294 8074 6.591750 TTTTACCTCAACAAAGTCACCAAA 57.408 33.333 0.00 0.00 0.00 3.28
4478 8258 5.343058 CAGCCATTTCAAGTCAAACATTACG 59.657 40.000 0.00 0.00 0.00 3.18
4499 8279 0.386838 GGTATGCTCCCAATTGCAGC 59.613 55.000 16.85 16.85 42.74 5.25
4645 8425 3.334583 ACTTCACCACACGATTAGCAT 57.665 42.857 0.00 0.00 0.00 3.79
4789 8569 4.826274 TCTTCTTACCCTGGAAGTCATG 57.174 45.455 0.00 0.00 39.67 3.07
4795 8575 9.243105 CAAGAAAATAATCTTCTTACCCTGGAA 57.757 33.333 0.00 0.00 40.37 3.53
4796 8576 8.390921 ACAAGAAAATAATCTTCTTACCCTGGA 58.609 33.333 0.00 0.00 40.37 3.86
4851 8631 7.120923 AGTTACCTGAGTAGTCACAAAAAGA 57.879 36.000 0.00 0.00 0.00 2.52
4865 8645 5.180680 CGGGGAAAGTTAAAAGTTACCTGAG 59.819 44.000 6.82 0.00 31.54 3.35
4867 8647 4.823442 ACGGGGAAAGTTAAAAGTTACCTG 59.177 41.667 9.52 9.52 34.00 4.00
4884 8664 2.841266 TCTTCCACATTATTCACGGGGA 59.159 45.455 0.00 0.00 0.00 4.81
4889 8669 3.938963 TCGGCTTCTTCCACATTATTCAC 59.061 43.478 0.00 0.00 0.00 3.18
4949 8729 1.393539 CTCGACGGTGTTTTAGCATGG 59.606 52.381 0.00 0.00 0.00 3.66
4956 8736 0.878961 GTGGCTCTCGACGGTGTTTT 60.879 55.000 0.00 0.00 0.00 2.43
4963 8743 4.180946 CTCCCGTGGCTCTCGACG 62.181 72.222 0.00 0.00 35.31 5.12
5028 8808 1.000283 GTACGGATGCCTCTCAGATGG 60.000 57.143 0.00 0.00 0.00 3.51
5029 8809 1.335415 CGTACGGATGCCTCTCAGATG 60.335 57.143 7.57 0.00 0.00 2.90
5030 8810 0.955178 CGTACGGATGCCTCTCAGAT 59.045 55.000 7.57 0.00 0.00 2.90
5031 8811 1.101635 CCGTACGGATGCCTCTCAGA 61.102 60.000 30.64 0.00 37.50 3.27
5032 8812 1.360551 CCGTACGGATGCCTCTCAG 59.639 63.158 30.64 0.00 37.50 3.35
5033 8813 1.379443 ACCGTACGGATGCCTCTCA 60.379 57.895 39.52 0.00 38.96 3.27
5034 8814 1.065928 CACCGTACGGATGCCTCTC 59.934 63.158 39.52 0.00 38.96 3.20
5035 8815 3.077519 GCACCGTACGGATGCCTCT 62.078 63.158 39.52 13.69 38.96 3.69
5036 8816 2.585247 GCACCGTACGGATGCCTC 60.585 66.667 39.52 16.64 38.96 4.70
5039 8819 2.890474 CAGGCACCGTACGGATGC 60.890 66.667 39.52 36.34 38.96 3.91
5040 8820 1.669049 TACCAGGCACCGTACGGATG 61.669 60.000 39.52 30.36 38.96 3.51
5041 8821 1.380246 TACCAGGCACCGTACGGAT 60.380 57.895 39.52 21.15 38.96 4.18
5042 8822 2.035469 TACCAGGCACCGTACGGA 59.965 61.111 39.52 12.87 38.96 4.69
5043 8823 2.493030 CTACCAGGCACCGTACGG 59.507 66.667 32.22 32.22 42.03 4.02
5044 8824 2.493030 CCTACCAGGCACCGTACG 59.507 66.667 8.69 8.69 0.00 3.67
5045 8825 2.897972 CCCTACCAGGCACCGTAC 59.102 66.667 0.00 0.00 32.73 3.67
5061 8841 2.351932 TTTTCGATAAAAGGGCGTTGCC 60.352 45.455 0.00 0.00 37.55 4.52
5062 8842 2.622546 TTTCGATAAAAGGGCGTTGC 57.377 45.000 0.00 0.00 0.00 4.17
5078 8858 1.531578 AGCGAGACGAAAGCCTTTTTC 59.468 47.619 0.00 0.00 0.00 2.29
5079 8859 1.594331 AGCGAGACGAAAGCCTTTTT 58.406 45.000 0.00 0.00 0.00 1.94
5080 8860 1.594331 AAGCGAGACGAAAGCCTTTT 58.406 45.000 0.00 0.00 0.00 2.27
5081 8861 1.594331 AAAGCGAGACGAAAGCCTTT 58.406 45.000 0.00 0.00 0.00 3.11
5082 8862 2.450609 TAAAGCGAGACGAAAGCCTT 57.549 45.000 0.00 0.00 0.00 4.35
5083 8863 2.674796 ATAAAGCGAGACGAAAGCCT 57.325 45.000 0.00 0.00 0.00 4.58
5084 8864 4.852609 TTTATAAAGCGAGACGAAAGCC 57.147 40.909 0.00 0.00 0.00 4.35
5085 8865 8.464288 CTTTATTTATAAAGCGAGACGAAAGC 57.536 34.615 8.78 0.00 41.69 3.51
5098 8878 7.603651 TCTTGGCGGTTTGCTTTATTTATAAA 58.396 30.769 0.00 0.00 45.43 1.40
5099 8879 7.159322 TCTTGGCGGTTTGCTTTATTTATAA 57.841 32.000 0.00 0.00 45.43 0.98
5100 8880 6.679392 GCTCTTGGCGGTTTGCTTTATTTATA 60.679 38.462 0.00 0.00 45.43 0.98
5101 8881 5.650543 CTCTTGGCGGTTTGCTTTATTTAT 58.349 37.500 0.00 0.00 45.43 1.40
5102 8882 4.617298 GCTCTTGGCGGTTTGCTTTATTTA 60.617 41.667 0.00 0.00 45.43 1.40
5103 8883 3.860754 GCTCTTGGCGGTTTGCTTTATTT 60.861 43.478 0.00 0.00 45.43 1.40
5104 8884 2.352715 GCTCTTGGCGGTTTGCTTTATT 60.353 45.455 0.00 0.00 45.43 1.40
5105 8885 1.202348 GCTCTTGGCGGTTTGCTTTAT 59.798 47.619 0.00 0.00 45.43 1.40
5106 8886 0.596082 GCTCTTGGCGGTTTGCTTTA 59.404 50.000 0.00 0.00 45.43 1.85
5107 8887 1.363807 GCTCTTGGCGGTTTGCTTT 59.636 52.632 0.00 0.00 45.43 3.51
5108 8888 1.391157 TTGCTCTTGGCGGTTTGCTT 61.391 50.000 0.00 0.00 45.43 3.91
5109 8889 1.827789 TTGCTCTTGGCGGTTTGCT 60.828 52.632 0.00 0.00 45.43 3.91
5110 8890 1.661509 GTTGCTCTTGGCGGTTTGC 60.662 57.895 0.00 0.00 45.43 3.68
5111 8891 0.594796 GTGTTGCTCTTGGCGGTTTG 60.595 55.000 0.00 0.00 45.43 2.93
5112 8892 1.034838 TGTGTTGCTCTTGGCGGTTT 61.035 50.000 0.00 0.00 45.43 3.27
5113 8893 0.823356 ATGTGTTGCTCTTGGCGGTT 60.823 50.000 0.00 0.00 45.43 4.44
5114 8894 0.036164 TATGTGTTGCTCTTGGCGGT 59.964 50.000 0.00 0.00 45.43 5.68
5115 8895 1.382522 ATATGTGTTGCTCTTGGCGG 58.617 50.000 0.00 0.00 45.43 6.13
5116 8896 3.002656 CCTTATATGTGTTGCTCTTGGCG 59.997 47.826 0.00 0.00 45.43 5.69
5117 8897 4.035675 GTCCTTATATGTGTTGCTCTTGGC 59.964 45.833 0.00 0.00 42.22 4.52
5118 8898 5.431765 AGTCCTTATATGTGTTGCTCTTGG 58.568 41.667 0.00 0.00 0.00 3.61
5119 8899 7.268586 ACTAGTCCTTATATGTGTTGCTCTTG 58.731 38.462 0.00 0.00 0.00 3.02
5120 8900 7.425224 ACTAGTCCTTATATGTGTTGCTCTT 57.575 36.000 0.00 0.00 0.00 2.85
5121 8901 7.124298 TGAACTAGTCCTTATATGTGTTGCTCT 59.876 37.037 0.00 0.00 0.00 4.09
5122 8902 7.265673 TGAACTAGTCCTTATATGTGTTGCTC 58.734 38.462 0.00 0.00 0.00 4.26
5123 8903 7.182817 TGAACTAGTCCTTATATGTGTTGCT 57.817 36.000 0.00 0.00 0.00 3.91
5124 8904 6.018669 GCTGAACTAGTCCTTATATGTGTTGC 60.019 42.308 0.00 0.00 0.00 4.17
5125 8905 7.010552 GTGCTGAACTAGTCCTTATATGTGTTG 59.989 40.741 0.00 0.00 0.00 3.33
5126 8906 7.042335 GTGCTGAACTAGTCCTTATATGTGTT 58.958 38.462 0.00 0.00 0.00 3.32
5127 8907 6.154534 TGTGCTGAACTAGTCCTTATATGTGT 59.845 38.462 0.00 0.00 0.00 3.72
5128 8908 6.477033 GTGTGCTGAACTAGTCCTTATATGTG 59.523 42.308 0.00 0.00 0.00 3.21
5129 8909 6.154534 TGTGTGCTGAACTAGTCCTTATATGT 59.845 38.462 0.00 0.00 0.00 2.29
5130 8910 6.477033 GTGTGTGCTGAACTAGTCCTTATATG 59.523 42.308 0.00 0.00 0.00 1.78
5131 8911 6.154534 TGTGTGTGCTGAACTAGTCCTTATAT 59.845 38.462 0.00 0.00 0.00 0.86
5132 8912 5.479027 TGTGTGTGCTGAACTAGTCCTTATA 59.521 40.000 0.00 0.00 0.00 0.98
5133 8913 4.283467 TGTGTGTGCTGAACTAGTCCTTAT 59.717 41.667 0.00 0.00 0.00 1.73
5134 8914 3.639561 TGTGTGTGCTGAACTAGTCCTTA 59.360 43.478 0.00 0.00 0.00 2.69
5135 8915 2.434336 TGTGTGTGCTGAACTAGTCCTT 59.566 45.455 0.00 0.00 0.00 3.36
5136 8916 2.039418 TGTGTGTGCTGAACTAGTCCT 58.961 47.619 0.00 0.00 0.00 3.85
5137 8917 2.135933 GTGTGTGTGCTGAACTAGTCC 58.864 52.381 0.00 0.00 0.00 3.85
5138 8918 1.787155 CGTGTGTGTGCTGAACTAGTC 59.213 52.381 0.00 0.00 0.00 2.59
5139 8919 1.852942 CGTGTGTGTGCTGAACTAGT 58.147 50.000 0.00 0.00 0.00 2.57
5140 8920 0.508641 GCGTGTGTGTGCTGAACTAG 59.491 55.000 0.00 0.00 0.00 2.57
5141 8921 0.179097 TGCGTGTGTGTGCTGAACTA 60.179 50.000 0.00 0.00 0.00 2.24
5142 8922 1.449423 TGCGTGTGTGTGCTGAACT 60.449 52.632 0.00 0.00 0.00 3.01
5143 8923 1.297598 GTGCGTGTGTGTGCTGAAC 60.298 57.895 0.00 0.00 0.00 3.18
5144 8924 2.468670 GGTGCGTGTGTGTGCTGAA 61.469 57.895 0.00 0.00 0.00 3.02
5145 8925 2.894879 GGTGCGTGTGTGTGCTGA 60.895 61.111 0.00 0.00 0.00 4.26
5146 8926 3.952675 GGGTGCGTGTGTGTGCTG 61.953 66.667 0.00 0.00 0.00 4.41
5147 8927 3.986072 TTGGGTGCGTGTGTGTGCT 62.986 57.895 0.00 0.00 0.00 4.40
5148 8928 3.468266 CTTGGGTGCGTGTGTGTGC 62.468 63.158 0.00 0.00 0.00 4.57
5149 8929 2.047151 GACTTGGGTGCGTGTGTGTG 62.047 60.000 0.00 0.00 0.00 3.82
5150 8930 1.817941 GACTTGGGTGCGTGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
5151 8931 1.498865 GAGACTTGGGTGCGTGTGTG 61.499 60.000 0.00 0.00 0.00 3.82
5152 8932 1.227556 GAGACTTGGGTGCGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
5153 8933 1.227527 TGAGACTTGGGTGCGTGTG 60.228 57.895 0.00 0.00 0.00 3.82
5154 8934 1.227556 GTGAGACTTGGGTGCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
5155 8935 1.224069 CTGTGAGACTTGGGTGCGTG 61.224 60.000 0.00 0.00 0.00 5.34
5156 8936 1.069765 CTGTGAGACTTGGGTGCGT 59.930 57.895 0.00 0.00 0.00 5.24
5157 8937 1.669115 CCTGTGAGACTTGGGTGCG 60.669 63.158 0.00 0.00 0.00 5.34
5158 8938 0.108585 TTCCTGTGAGACTTGGGTGC 59.891 55.000 0.00 0.00 0.00 5.01
5159 8939 1.694150 TCTTCCTGTGAGACTTGGGTG 59.306 52.381 0.00 0.00 0.00 4.61
5160 8940 2.103153 TCTTCCTGTGAGACTTGGGT 57.897 50.000 0.00 0.00 0.00 4.51
5161 8941 2.370189 ACTTCTTCCTGTGAGACTTGGG 59.630 50.000 0.00 0.00 0.00 4.12
5162 8942 3.760580 ACTTCTTCCTGTGAGACTTGG 57.239 47.619 0.00 0.00 0.00 3.61
5163 8943 5.201713 TGTACTTCTTCCTGTGAGACTTG 57.798 43.478 0.00 0.00 0.00 3.16
5164 8944 6.153680 CCTATGTACTTCTTCCTGTGAGACTT 59.846 42.308 0.00 0.00 0.00 3.01
5165 8945 5.654650 CCTATGTACTTCTTCCTGTGAGACT 59.345 44.000 0.00 0.00 0.00 3.24
5166 8946 5.419471 ACCTATGTACTTCTTCCTGTGAGAC 59.581 44.000 0.00 0.00 0.00 3.36
5167 8947 5.580998 ACCTATGTACTTCTTCCTGTGAGA 58.419 41.667 0.00 0.00 0.00 3.27
5168 8948 5.923733 ACCTATGTACTTCTTCCTGTGAG 57.076 43.478 0.00 0.00 0.00 3.51
5169 8949 6.017192 AGAACCTATGTACTTCTTCCTGTGA 58.983 40.000 0.00 0.00 0.00 3.58
5170 8950 6.102663 CAGAACCTATGTACTTCTTCCTGTG 58.897 44.000 0.00 0.00 0.00 3.66
5171 8951 5.337652 GCAGAACCTATGTACTTCTTCCTGT 60.338 44.000 0.00 0.00 0.00 4.00
5172 8952 5.105146 AGCAGAACCTATGTACTTCTTCCTG 60.105 44.000 0.00 0.00 0.00 3.86
5173 8953 5.026790 AGCAGAACCTATGTACTTCTTCCT 58.973 41.667 0.00 0.00 0.00 3.36
5174 8954 5.105310 TCAGCAGAACCTATGTACTTCTTCC 60.105 44.000 0.00 0.00 0.00 3.46
5175 8955 5.967088 TCAGCAGAACCTATGTACTTCTTC 58.033 41.667 0.00 0.00 0.00 2.87
5176 8956 5.105146 CCTCAGCAGAACCTATGTACTTCTT 60.105 44.000 0.00 0.00 0.00 2.52
5177 8957 4.404073 CCTCAGCAGAACCTATGTACTTCT 59.596 45.833 0.00 0.00 0.00 2.85
5178 8958 4.442192 CCCTCAGCAGAACCTATGTACTTC 60.442 50.000 0.00 0.00 0.00 3.01
5179 8959 3.452627 CCCTCAGCAGAACCTATGTACTT 59.547 47.826 0.00 0.00 0.00 2.24
5180 8960 3.034635 CCCTCAGCAGAACCTATGTACT 58.965 50.000 0.00 0.00 0.00 2.73
5181 8961 2.483889 GCCCTCAGCAGAACCTATGTAC 60.484 54.545 0.00 0.00 42.97 2.90
5182 8962 1.762957 GCCCTCAGCAGAACCTATGTA 59.237 52.381 0.00 0.00 42.97 2.29
5183 8963 0.543749 GCCCTCAGCAGAACCTATGT 59.456 55.000 0.00 0.00 42.97 2.29
5184 8964 3.393472 GCCCTCAGCAGAACCTATG 57.607 57.895 0.00 0.00 42.97 2.23
5195 8975 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
5196 8976 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
5197 8977 0.250467 TCTTGTTGAGCTGTGCCCTC 60.250 55.000 0.00 0.00 0.00 4.30
5198 8978 0.536006 GTCTTGTTGAGCTGTGCCCT 60.536 55.000 0.00 0.00 0.00 5.19
5199 8979 0.819259 TGTCTTGTTGAGCTGTGCCC 60.819 55.000 0.00 0.00 0.00 5.36
5200 8980 1.024271 TTGTCTTGTTGAGCTGTGCC 58.976 50.000 0.00 0.00 0.00 5.01
5201 8981 2.849880 TTTGTCTTGTTGAGCTGTGC 57.150 45.000 0.00 0.00 0.00 4.57
5223 9003 2.949644 CTGGACCGTCCTGTTTCTTTTT 59.050 45.455 18.54 0.00 37.46 1.94
5224 9004 2.171870 TCTGGACCGTCCTGTTTCTTTT 59.828 45.455 18.54 0.00 37.46 2.27
5225 9005 1.766496 TCTGGACCGTCCTGTTTCTTT 59.234 47.619 18.54 0.00 37.46 2.52
5226 9006 1.344763 CTCTGGACCGTCCTGTTTCTT 59.655 52.381 18.54 0.00 37.46 2.52
5227 9007 0.969894 CTCTGGACCGTCCTGTTTCT 59.030 55.000 18.54 0.00 37.46 2.52
5228 9008 0.966920 TCTCTGGACCGTCCTGTTTC 59.033 55.000 18.54 0.00 37.46 2.78
5229 9009 0.680061 GTCTCTGGACCGTCCTGTTT 59.320 55.000 18.54 0.00 37.46 2.83
5230 9010 0.469331 TGTCTCTGGACCGTCCTGTT 60.469 55.000 18.54 0.00 41.47 3.16
5231 9011 1.153061 TGTCTCTGGACCGTCCTGT 59.847 57.895 18.54 0.00 41.47 4.00
5232 9012 1.587054 GTGTCTCTGGACCGTCCTG 59.413 63.158 18.54 17.43 41.47 3.86
5233 9013 1.972223 CGTGTCTCTGGACCGTCCT 60.972 63.158 18.54 0.00 41.47 3.85
5234 9014 2.197643 GACGTGTCTCTGGACCGTCC 62.198 65.000 10.96 10.96 46.95 4.79
5235 9015 1.209640 GACGTGTCTCTGGACCGTC 59.790 63.158 17.07 17.07 46.85 4.79
5236 9016 2.266627 GGACGTGTCTCTGGACCGT 61.267 63.158 0.00 10.55 44.99 4.83
5237 9017 1.802337 TTGGACGTGTCTCTGGACCG 61.802 60.000 0.00 0.00 41.47 4.79
5238 9018 0.391597 TTTGGACGTGTCTCTGGACC 59.608 55.000 0.00 0.00 41.47 4.46
5239 9019 1.068741 ACTTTGGACGTGTCTCTGGAC 59.931 52.381 0.00 0.00 42.42 4.02
5240 9020 1.340248 GACTTTGGACGTGTCTCTGGA 59.660 52.381 0.00 0.00 0.00 3.86
5241 9021 1.341531 AGACTTTGGACGTGTCTCTGG 59.658 52.381 0.00 0.00 36.45 3.86
5242 9022 2.802787 AGACTTTGGACGTGTCTCTG 57.197 50.000 0.00 0.00 36.45 3.35
5243 9023 4.523173 TGATTAGACTTTGGACGTGTCTCT 59.477 41.667 8.59 0.00 40.86 3.10
5244 9024 4.806330 TGATTAGACTTTGGACGTGTCTC 58.194 43.478 8.59 0.00 40.86 3.36
5245 9025 4.322049 CCTGATTAGACTTTGGACGTGTCT 60.322 45.833 10.00 10.00 42.74 3.41
5246 9026 3.927142 CCTGATTAGACTTTGGACGTGTC 59.073 47.826 0.00 0.00 0.00 3.67
5247 9027 3.576982 TCCTGATTAGACTTTGGACGTGT 59.423 43.478 0.00 0.00 0.00 4.49
5248 9028 4.188247 TCCTGATTAGACTTTGGACGTG 57.812 45.455 0.00 0.00 0.00 4.49
5249 9029 4.141914 GGATCCTGATTAGACTTTGGACGT 60.142 45.833 3.84 0.00 0.00 4.34
5250 9030 4.372656 GGATCCTGATTAGACTTTGGACG 58.627 47.826 3.84 0.00 0.00 4.79
5251 9031 4.372656 CGGATCCTGATTAGACTTTGGAC 58.627 47.826 10.75 0.00 0.00 4.02
5252 9032 3.388024 CCGGATCCTGATTAGACTTTGGA 59.612 47.826 10.75 0.00 0.00 3.53
5253 9033 3.733337 CCGGATCCTGATTAGACTTTGG 58.267 50.000 10.75 0.00 0.00 3.28
5254 9034 3.134458 GCCGGATCCTGATTAGACTTTG 58.866 50.000 5.05 0.00 0.00 2.77
5255 9035 2.224066 CGCCGGATCCTGATTAGACTTT 60.224 50.000 5.05 0.00 0.00 2.66
5256 9036 1.341531 CGCCGGATCCTGATTAGACTT 59.658 52.381 5.05 0.00 0.00 3.01
5257 9037 0.962489 CGCCGGATCCTGATTAGACT 59.038 55.000 5.05 0.00 0.00 3.24
5258 9038 0.038159 CCGCCGGATCCTGATTAGAC 60.038 60.000 5.05 0.00 0.00 2.59
5259 9039 0.469331 ACCGCCGGATCCTGATTAGA 60.469 55.000 11.71 0.00 0.00 2.10
5260 9040 0.319900 CACCGCCGGATCCTGATTAG 60.320 60.000 11.71 0.00 0.00 1.73
5261 9041 1.745890 CACCGCCGGATCCTGATTA 59.254 57.895 11.71 0.00 0.00 1.75
5262 9042 2.505982 CACCGCCGGATCCTGATT 59.494 61.111 11.71 0.00 0.00 2.57
5263 9043 3.550431 CCACCGCCGGATCCTGAT 61.550 66.667 11.71 0.00 0.00 2.90
5277 9057 4.821589 CTCCGCTTCCTCCGCCAC 62.822 72.222 0.00 0.00 0.00 5.01
5282 9062 4.516195 GTCGCCTCCGCTTCCTCC 62.516 72.222 0.00 0.00 0.00 4.30
5283 9063 3.708220 CTGTCGCCTCCGCTTCCTC 62.708 68.421 0.00 0.00 0.00 3.71
5284 9064 3.764466 CTGTCGCCTCCGCTTCCT 61.764 66.667 0.00 0.00 0.00 3.36
5285 9065 4.821589 CCTGTCGCCTCCGCTTCC 62.822 72.222 0.00 0.00 0.00 3.46
5296 9076 4.129737 ATGGTCGTCCGCCTGTCG 62.130 66.667 0.00 0.00 36.30 4.35
5297 9077 2.202756 GATGGTCGTCCGCCTGTC 60.203 66.667 0.00 0.00 36.30 3.51
5298 9078 4.129737 CGATGGTCGTCCGCCTGT 62.130 66.667 0.00 0.00 34.72 4.00
5299 9079 3.758088 CTCGATGGTCGTCCGCCTG 62.758 68.421 0.00 0.00 41.35 4.85
5300 9080 3.518998 CTCGATGGTCGTCCGCCT 61.519 66.667 0.00 0.00 41.35 5.52
5303 9083 4.907034 CCGCTCGATGGTCGTCCG 62.907 72.222 0.00 3.91 41.35 4.79
5304 9084 3.471244 CTCCGCTCGATGGTCGTCC 62.471 68.421 3.99 0.00 41.35 4.79
5305 9085 2.024871 CTCCGCTCGATGGTCGTC 59.975 66.667 3.99 0.00 41.35 4.20
5306 9086 3.518998 CCTCCGCTCGATGGTCGT 61.519 66.667 3.99 0.00 41.35 4.34
5307 9087 3.471244 GACCTCCGCTCGATGGTCG 62.471 68.421 14.10 0.00 39.39 4.79
5308 9088 2.413765 GACCTCCGCTCGATGGTC 59.586 66.667 14.10 14.10 41.52 4.02
5309 9089 3.518998 CGACCTCCGCTCGATGGT 61.519 66.667 3.99 6.03 32.65 3.55
5310 9090 4.271816 CCGACCTCCGCTCGATGG 62.272 72.222 0.00 0.00 36.84 3.51
5311 9091 4.933064 GCCGACCTCCGCTCGATG 62.933 72.222 0.00 0.00 36.84 3.84
5318 9098 4.796231 CTTCACCGCCGACCTCCG 62.796 72.222 0.00 0.00 38.18 4.63
5319 9099 4.452733 CCTTCACCGCCGACCTCC 62.453 72.222 0.00 0.00 0.00 4.30
5320 9100 2.280823 CTACCTTCACCGCCGACCTC 62.281 65.000 0.00 0.00 0.00 3.85
5321 9101 2.283388 TACCTTCACCGCCGACCT 60.283 61.111 0.00 0.00 0.00 3.85
5322 9102 2.183555 CTACCTTCACCGCCGACC 59.816 66.667 0.00 0.00 0.00 4.79
5323 9103 1.139095 CTCTACCTTCACCGCCGAC 59.861 63.158 0.00 0.00 0.00 4.79
5324 9104 0.395311 ATCTCTACCTTCACCGCCGA 60.395 55.000 0.00 0.00 0.00 5.54
5325 9105 0.249073 CATCTCTACCTTCACCGCCG 60.249 60.000 0.00 0.00 0.00 6.46
5326 9106 1.112113 TCATCTCTACCTTCACCGCC 58.888 55.000 0.00 0.00 0.00 6.13
5327 9107 1.534175 CGTCATCTCTACCTTCACCGC 60.534 57.143 0.00 0.00 0.00 5.68
5328 9108 1.743958 ACGTCATCTCTACCTTCACCG 59.256 52.381 0.00 0.00 0.00 4.94
5329 9109 2.099427 GGACGTCATCTCTACCTTCACC 59.901 54.545 18.91 0.00 0.00 4.02
5330 9110 2.099427 GGGACGTCATCTCTACCTTCAC 59.901 54.545 18.91 0.00 0.00 3.18
5331 9111 2.376109 GGGACGTCATCTCTACCTTCA 58.624 52.381 18.91 0.00 0.00 3.02
5352 9132 3.081409 TTAGCCGCCCTCAGGACC 61.081 66.667 0.00 0.00 33.47 4.46
5353 9133 2.501610 CTTAGCCGCCCTCAGGAC 59.498 66.667 0.00 0.00 33.47 3.85
5354 9134 3.470888 GCTTAGCCGCCCTCAGGA 61.471 66.667 0.00 0.00 33.47 3.86
5355 9135 4.899239 CGCTTAGCCGCCCTCAGG 62.899 72.222 0.00 0.00 0.00 3.86
5356 9136 4.899239 CCGCTTAGCCGCCCTCAG 62.899 72.222 0.00 0.00 0.00 3.35
5374 9154 1.812922 CTACTTGCAGCTCTGGCGG 60.813 63.158 0.00 0.00 44.37 6.13
5375 9155 2.459442 GCTACTTGCAGCTCTGGCG 61.459 63.158 0.00 0.00 44.37 5.69
5376 9156 2.111582 GGCTACTTGCAGCTCTGGC 61.112 63.158 0.00 0.00 45.15 4.85
5377 9157 0.743701 CTGGCTACTTGCAGCTCTGG 60.744 60.000 0.00 0.00 45.15 3.86
5378 9158 0.248565 TCTGGCTACTTGCAGCTCTG 59.751 55.000 0.00 0.00 45.15 3.35
5379 9159 0.248843 GTCTGGCTACTTGCAGCTCT 59.751 55.000 0.00 0.00 45.15 4.09
5380 9160 0.036952 TGTCTGGCTACTTGCAGCTC 60.037 55.000 0.00 0.00 45.15 4.09
5381 9161 0.036577 CTGTCTGGCTACTTGCAGCT 60.037 55.000 0.00 0.00 45.15 4.24
5382 9162 0.321122 ACTGTCTGGCTACTTGCAGC 60.321 55.000 0.00 0.00 45.15 5.25
5383 9163 2.175878 AACTGTCTGGCTACTTGCAG 57.824 50.000 0.00 0.00 45.15 4.41
5384 9164 2.158827 TCAAACTGTCTGGCTACTTGCA 60.159 45.455 0.00 0.00 45.15 4.08
5385 9165 2.494059 TCAAACTGTCTGGCTACTTGC 58.506 47.619 0.00 0.00 41.94 4.01
5386 9166 4.380531 TCTTCAAACTGTCTGGCTACTTG 58.619 43.478 0.00 0.00 0.00 3.16
5387 9167 4.345257 TCTCTTCAAACTGTCTGGCTACTT 59.655 41.667 0.00 0.00 0.00 2.24
5388 9168 3.898123 TCTCTTCAAACTGTCTGGCTACT 59.102 43.478 0.00 0.00 0.00 2.57
5389 9169 4.241681 CTCTCTTCAAACTGTCTGGCTAC 58.758 47.826 0.00 0.00 0.00 3.58
5390 9170 3.306364 GCTCTCTTCAAACTGTCTGGCTA 60.306 47.826 0.00 0.00 0.00 3.93
5391 9171 2.549778 GCTCTCTTCAAACTGTCTGGCT 60.550 50.000 0.00 0.00 0.00 4.75
5392 9172 1.803555 GCTCTCTTCAAACTGTCTGGC 59.196 52.381 0.00 0.00 0.00 4.85
5393 9173 2.064762 CGCTCTCTTCAAACTGTCTGG 58.935 52.381 0.00 0.00 0.00 3.86
5394 9174 2.728839 GACGCTCTCTTCAAACTGTCTG 59.271 50.000 0.00 0.00 0.00 3.51
5395 9175 2.362397 TGACGCTCTCTTCAAACTGTCT 59.638 45.455 0.00 0.00 0.00 3.41
5396 9176 2.728839 CTGACGCTCTCTTCAAACTGTC 59.271 50.000 0.00 0.00 0.00 3.51
5397 9177 2.101582 ACTGACGCTCTCTTCAAACTGT 59.898 45.455 0.00 0.00 0.00 3.55
5398 9178 2.748605 ACTGACGCTCTCTTCAAACTG 58.251 47.619 0.00 0.00 0.00 3.16
5399 9179 3.821600 TCTACTGACGCTCTCTTCAAACT 59.178 43.478 0.00 0.00 0.00 2.66
5400 9180 4.162096 TCTACTGACGCTCTCTTCAAAC 57.838 45.455 0.00 0.00 0.00 2.93
5401 9181 4.437524 CGATCTACTGACGCTCTCTTCAAA 60.438 45.833 0.00 0.00 0.00 2.69
5402 9182 3.064134 CGATCTACTGACGCTCTCTTCAA 59.936 47.826 0.00 0.00 0.00 2.69
5403 9183 2.609916 CGATCTACTGACGCTCTCTTCA 59.390 50.000 0.00 0.00 0.00 3.02
5404 9184 2.032377 CCGATCTACTGACGCTCTCTTC 60.032 54.545 0.00 0.00 0.00 2.87
5405 9185 1.944024 CCGATCTACTGACGCTCTCTT 59.056 52.381 0.00 0.00 0.00 2.85
5406 9186 1.588674 CCGATCTACTGACGCTCTCT 58.411 55.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.