AutoCloner

Multiple sequence alignment - TraesCS4B01G160900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G160900	chr4B	100.000	2324	0	0	1	2324	316273325	316271002	0.000000e+00	4292
1	TraesCS4B01G160900	chr4B	84.957	698	78	20	3	681	365580450	365579761	0.000000e+00	682
2	TraesCS4B01G160900	chr5B	91.219	968	85	0	688	1655	520412971	520412004	0.000000e+00	1317
3	TraesCS4B01G160900	chr5B	81.781	988	142	27	685	1664	485731755	485730798	0.000000e+00	793
4	TraesCS4B01G160900	chr5B	80.813	959	145	30	710	1660	462178979	462178052	0.000000e+00	715
5	TraesCS4B01G160900	chr5B	85.216	717	78	19	1	695	203966357	203965647	0.000000e+00	712
6	TraesCS4B01G160900	chr7A	88.422	976	106	7	688	1661	3089920	3090890	0.000000e+00	1170
7	TraesCS4B01G160900	chr7D	93.805	678	32	6	1655	2324	424866077	424865402	0.000000e+00	1011
8	TraesCS4B01G160900	chr7D	92.687	670	44	3	1660	2324	301974642	301975311	0.000000e+00	961
9	TraesCS4B01G160900	chr7D	92.515	668	49	1	1656	2322	371281531	371282198	0.000000e+00	955
10	TraesCS4B01G160900	chr7D	83.418	983	127	20	685	1660	159841682	159842635	0.000000e+00	880
11	TraesCS4B01G160900	chr7D	86.037	709	82	13	1	695	466402531	466403236	0.000000e+00	745
12	TraesCS4B01G160900	chr7D	79.898	985	159	32	691	1658	69435933	69434971	0.000000e+00	686
13	TraesCS4B01G160900	chr3D	93.175	674	42	2	1655	2324	291237531	291238204	0.000000e+00	987
14	TraesCS4B01G160900	chr3D	92.296	675	47	2	1655	2324	357831803	357831129	0.000000e+00	953
15	TraesCS4B01G160900	chr3D	85.495	717	75	23	1	695	427185874	427186583	0.000000e+00	721
16	TraesCS4B01G160900	chr1B	92.899	676	38	5	1655	2322	257900965	257901638	0.000000e+00	974
17	TraesCS4B01G160900	chr2D	92.593	675	44	4	1652	2324	304717054	304717724	0.000000e+00	965
18	TraesCS4B01G160900	chr2D	84.986	706	76	19	1	684	338412302	338411605	0.000000e+00	689
19	TraesCS4B01G160900	chr4D	92.478	678	41	8	1655	2324	119953483	119952808	0.000000e+00	961
20	TraesCS4B01G160900	chr4D	82.675	987	132	25	686	1661	40561515	40560557	0.000000e+00	839
21	TraesCS4B01G160900	chr4D	81.414	990	140	31	686	1662	477514346	477515304	0.000000e+00	769
22	TraesCS4B01G160900	chr4D	80.635	976	145	34	692	1655	82938291	82937348	0.000000e+00	715
23	TraesCS4B01G160900	chr5D	92.467	677	40	6	1655	2324	136487932	136488604	0.000000e+00	957
24	TraesCS4B01G160900	chr5D	86.434	715	70	17	1	695	306599741	306600448	0.000000e+00	758
25	TraesCS4B01G160900	chr4A	81.976	982	141	22	685	1660	558683407	558682456	0.000000e+00	800
26	TraesCS4B01G160900	chr2A	81.893	972	154	18	688	1652	690407548	690408504	0.000000e+00	800
27	TraesCS4B01G160900	chr2A	84.559	272	32	8	1395	1660	592002737	592003004	6.370000e-66	261
28	TraesCS4B01G160900	chr7B	81.614	979	149	26	688	1654	151379333	151380292	0.000000e+00	782
29	TraesCS4B01G160900	chr7B	90.554	307	26	3	1376	1680	717534882	717534577	1.000000e-108	403
30	TraesCS4B01G160900	chr3A	86.178	709	80	13	1	695	679458351	679457647	0.000000e+00	750
31	TraesCS4B01G160900	chr1D	85.874	715	78	17	1	695	209187989	209188700	0.000000e+00	739
32	TraesCS4B01G160900	chr5A	84.225	710	93	16	1	695	290159108	290158403	0.000000e+00	673
33	TraesCS4B01G160900	chr1A	79.536	733	110	26	938	1662	17334745	17334045	9.650000e-134	486

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G160900	chr4B	316271002	316273325	2323	True	4292	4292	100.000	1	2324	1	chr4B.!!$R1	2323
1	TraesCS4B01G160900	chr4B	365579761	365580450	689	True	682	682	84.957	3	681	1	chr4B.!!$R2	678
2	TraesCS4B01G160900	chr5B	520412004	520412971	967	True	1317	1317	91.219	688	1655	1	chr5B.!!$R4	967
3	TraesCS4B01G160900	chr5B	485730798	485731755	957	True	793	793	81.781	685	1664	1	chr5B.!!$R3	979
4	TraesCS4B01G160900	chr5B	462178052	462178979	927	True	715	715	80.813	710	1660	1	chr5B.!!$R2	950
5	TraesCS4B01G160900	chr5B	203965647	203966357	710	True	712	712	85.216	1	695	1	chr5B.!!$R1	694
6	TraesCS4B01G160900	chr7A	3089920	3090890	970	False	1170	1170	88.422	688	1661	1	chr7A.!!$F1	973
7	TraesCS4B01G160900	chr7D	424865402	424866077	675	True	1011	1011	93.805	1655	2324	1	chr7D.!!$R2	669
8	TraesCS4B01G160900	chr7D	301974642	301975311	669	False	961	961	92.687	1660	2324	1	chr7D.!!$F2	664
9	TraesCS4B01G160900	chr7D	371281531	371282198	667	False	955	955	92.515	1656	2322	1	chr7D.!!$F3	666
10	TraesCS4B01G160900	chr7D	159841682	159842635	953	False	880	880	83.418	685	1660	1	chr7D.!!$F1	975
11	TraesCS4B01G160900	chr7D	466402531	466403236	705	False	745	745	86.037	1	695	1	chr7D.!!$F4	694
12	TraesCS4B01G160900	chr7D	69434971	69435933	962	True	686	686	79.898	691	1658	1	chr7D.!!$R1	967
13	TraesCS4B01G160900	chr3D	291237531	291238204	673	False	987	987	93.175	1655	2324	1	chr3D.!!$F1	669
14	TraesCS4B01G160900	chr3D	357831129	357831803	674	True	953	953	92.296	1655	2324	1	chr3D.!!$R1	669
15	TraesCS4B01G160900	chr3D	427185874	427186583	709	False	721	721	85.495	1	695	1	chr3D.!!$F2	694
16	TraesCS4B01G160900	chr1B	257900965	257901638	673	False	974	974	92.899	1655	2322	1	chr1B.!!$F1	667
17	TraesCS4B01G160900	chr2D	304717054	304717724	670	False	965	965	92.593	1652	2324	1	chr2D.!!$F1	672
18	TraesCS4B01G160900	chr2D	338411605	338412302	697	True	689	689	84.986	1	684	1	chr2D.!!$R1	683
19	TraesCS4B01G160900	chr4D	119952808	119953483	675	True	961	961	92.478	1655	2324	1	chr4D.!!$R3	669
20	TraesCS4B01G160900	chr4D	40560557	40561515	958	True	839	839	82.675	686	1661	1	chr4D.!!$R1	975
21	TraesCS4B01G160900	chr4D	477514346	477515304	958	False	769	769	81.414	686	1662	1	chr4D.!!$F1	976
22	TraesCS4B01G160900	chr4D	82937348	82938291	943	True	715	715	80.635	692	1655	1	chr4D.!!$R2	963
23	TraesCS4B01G160900	chr5D	136487932	136488604	672	False	957	957	92.467	1655	2324	1	chr5D.!!$F1	669
24	TraesCS4B01G160900	chr5D	306599741	306600448	707	False	758	758	86.434	1	695	1	chr5D.!!$F2	694
25	TraesCS4B01G160900	chr4A	558682456	558683407	951	True	800	800	81.976	685	1660	1	chr4A.!!$R1	975
26	TraesCS4B01G160900	chr2A	690407548	690408504	956	False	800	800	81.893	688	1652	1	chr2A.!!$F2	964
27	TraesCS4B01G160900	chr7B	151379333	151380292	959	False	782	782	81.614	688	1654	1	chr7B.!!$F1	966
28	TraesCS4B01G160900	chr3A	679457647	679458351	704	True	750	750	86.178	1	695	1	chr3A.!!$R1	694
29	TraesCS4B01G160900	chr1D	209187989	209188700	711	False	739	739	85.874	1	695	1	chr1D.!!$F1	694
30	TraesCS4B01G160900	chr5A	290158403	290159108	705	True	673	673	84.225	1	695	1	chr5A.!!$R1	694
31	TraesCS4B01G160900	chr1A	17334045	17334745	700	True	486	486	79.536	938	1662	1	chr1A.!!$R1	724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
219	230	0.817654	GGTGCTTTCTTGGCCCATAC	59.182	55.0	0.0	0.0	0.0	2.39	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1534	1585	0.467844	ACCCATTGTGAGCACTTGCA	60.468	50.0	3.62	0.0	45.16	4.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	43	5.655090	TGTTAGATTGGATCTCGTGGTTCTA	59.345	40.000	0.00	0.00	40.76	2.10
51	53	1.610038	TCGTGGTTCTAGAACTTGCGA	59.390	47.619	29.66	28.66	40.94	5.10
52	54	2.230508	TCGTGGTTCTAGAACTTGCGAT	59.769	45.455	29.66	0.00	40.94	4.58
75	77	3.129287	GGCTGGAATTGTGTTTCATCGAT	59.871	43.478	0.00	0.00	0.00	3.59
83	85	3.869065	TGTGTTTCATCGATTCCCCTAC	58.131	45.455	0.00	0.00	0.00	3.18
85	87	2.498481	TGTTTCATCGATTCCCCTACGT	59.502	45.455	0.00	0.00	0.00	3.57
86	88	3.055675	TGTTTCATCGATTCCCCTACGTT	60.056	43.478	0.00	0.00	0.00	3.99
176	186	2.032681	GAGCGCCCTGGTGAGTTT	59.967	61.111	2.29	0.00	0.00	2.66
219	230	0.817654	GGTGCTTTCTTGGCCCATAC	59.182	55.000	0.00	0.00	0.00	2.39
220	231	1.544724	GTGCTTTCTTGGCCCATACA	58.455	50.000	0.00	0.00	0.00	2.29
221	232	1.892474	GTGCTTTCTTGGCCCATACAA	59.108	47.619	0.00	0.00	0.00	2.41
287	298	2.028476	TGGACTCCGTTTGGTACTGATG	60.028	50.000	0.00	0.00	36.30	3.07
349	362	3.134804	ACTGGGCACTATGTCAATAGGTC	59.865	47.826	0.00	0.00	40.23	3.85
490	509	5.175859	CAAGCTTAATTCCTACTCGTCCAA	58.824	41.667	0.00	0.00	0.00	3.53
500	519	6.540438	TCCTACTCGTCCAAGTAAATGATT	57.460	37.500	0.00	0.00	31.56	2.57
508	528	9.672086	CTCGTCCAAGTAAATGATTAAAACAAA	57.328	29.630	0.00	0.00	0.00	2.83
573	604	4.637276	TCTTTTCTTTCGTAGCATGGACA	58.363	39.130	0.00	0.00	0.00	4.02
593	624	7.319646	TGGACATTTATATGGTTCAAAGCAAC	58.680	34.615	0.00	0.00	40.14	4.17
595	626	7.816995	GGACATTTATATGGTTCAAAGCAACAA	59.183	33.333	0.00	0.00	40.14	2.83
615	646	9.443283	GCAACAATCTATATTTGACATGAAGAC	57.557	33.333	0.00	0.00	0.00	3.01
630	661	5.349817	ACATGAAGACTTCAATACTCAAGCG	59.650	40.000	21.29	3.78	43.95	4.68
667	698	8.702438	CAACCATGTCTTTCAAAATATCAACAC	58.298	33.333	0.00	0.00	0.00	3.32
668	699	8.181904	ACCATGTCTTTCAAAATATCAACACT	57.818	30.769	0.00	0.00	0.00	3.55
669	700	9.295825	ACCATGTCTTTCAAAATATCAACACTA	57.704	29.630	0.00	0.00	0.00	2.74
742	773	8.095169	GGAAGACTTCTTTCACCACTAAATCTA	58.905	37.037	14.72	0.00	36.11	1.98
840	873	9.783081	AAGATTCAAATTTTCTTATGGCAACTT	57.217	25.926	2.44	0.00	37.61	2.66
853	886	5.726980	ATGGCAACTTTTTCAGAATGCTA	57.273	34.783	5.81	0.79	38.30	3.49
886	919	4.264543	GATGTGATGAAACATCGTGGTC	57.735	45.455	1.88	0.87	45.04	4.02
950	984	6.177610	AGACCTCACAACACTTGTTCTTTAA	58.822	36.000	0.00	0.00	43.23	1.52
980	1014	1.902508	TGCTAGGGTGACTTGGAGAAG	59.097	52.381	0.00	0.00	35.07	2.85
1022	1056	4.150897	TGGATCTGTGCCCTAACAATAC	57.849	45.455	0.00	0.00	0.00	1.89
1071	1105	2.649742	TCTTCCCTGGTGGAGAAGAT	57.350	50.000	8.49	0.00	46.24	2.40
1229	1264	3.391049	GGCTACTGAAACAAGAAGACGT	58.609	45.455	0.00	0.00	0.00	4.34
1295	1330	2.666994	CGATGATGATGAGAATCTGCGG	59.333	50.000	0.00	0.00	34.92	5.69
1303	1338	2.751436	GAATCTGCGGGGCAAGCA	60.751	61.111	6.00	6.00	42.99	3.91
1355	1395	2.756400	GGTGGACCTGTGATGCCA	59.244	61.111	0.00	0.00	0.00	4.92
1367	1407	1.243342	TGATGCCAAGTCGCTTTGGG	61.243	55.000	16.33	5.96	46.23	4.12
1381	1422	4.160814	TCGCTTTGGGCTAGTTATGTTCTA	59.839	41.667	0.00	0.00	39.13	2.10
1449	1498	0.829990	TTGTGGTGAGCAGTCTGTGA	59.170	50.000	0.93	0.00	0.00	3.58
1487	1537	2.569404	GGCCTGGGATTCTAGATACTGG	59.431	54.545	0.00	0.00	0.00	4.00
1491	1541	6.195700	GCCTGGGATTCTAGATACTGGTATA	58.804	44.000	0.00	0.00	0.00	1.47
1495	1546	9.480861	CTGGGATTCTAGATACTGGTATATTGA	57.519	37.037	0.00	0.00	0.00	2.57
1534	1585	1.138266	CCACGGTGGGTAATCTCGATT	59.862	52.381	19.63	0.00	32.67	3.34
1537	1588	1.472552	CGGTGGGTAATCTCGATTGCA	60.473	52.381	9.39	0.00	35.50	4.08
1755	1809	6.655078	TGCTCAAGTATGATCATAGTGCTA	57.345	37.500	21.20	10.45	34.37	3.49
1758	1812	6.013842	TCAAGTATGATCATAGTGCTACCG	57.986	41.667	21.20	8.30	0.00	4.02
1785	1839	7.611855	AGTTGGTGTTTTATAAGAGAAGATGGG	59.388	37.037	0.00	0.00	0.00	4.00
1809	1871	9.225436	GGGGACTCAAATAAAAATTGCATAAAA	57.775	29.630	0.00	0.00	0.00	1.52
1974	2042	5.860941	AGATATATCATAGGCGGTTCCTG	57.139	43.478	15.08	0.00	46.98	3.86
2025	2093	4.221262	CCACCATTCTTTCACAATCCATGT	59.779	41.667	0.00	0.00	45.34	3.21
2067	2135	3.506067	CCTTCCATACCAACACTTTCCAC	59.494	47.826	0.00	0.00	0.00	4.02
2299	2369	6.934056	TGGCACATACAAATTTGCTTAGAAT	58.066	32.000	18.12	0.00	38.57	2.40
2302	2372	6.813152	GCACATACAAATTTGCTTAGAATGGT	59.187	34.615	18.12	1.61	36.15	3.55
2318	2388	2.502213	TGGTACGAGAATACCGCATG	57.498	50.000	0.00	0.00	46.72	4.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	6.931281	CACGAGATCCAATCTAACACCATAAT	59.069	38.462	0.00	0.00	40.38	1.28
12	13	5.221441	CCACGAGATCCAATCTAACACCATA	60.221	44.000	0.00	0.00	40.38	2.74
41	43	0.036732	TTCCAGCCATCGCAAGTTCT	59.963	50.000	0.00	0.00	37.52	3.01
51	53	3.119388	CGATGAAACACAATTCCAGCCAT	60.119	43.478	0.00	0.00	0.00	4.40
52	54	2.228582	CGATGAAACACAATTCCAGCCA	59.771	45.455	0.00	0.00	0.00	4.75
90	93	8.798402	CGCCCTATAAATTACCAAATATTCCAA	58.202	33.333	0.00	0.00	0.00	3.53
103	106	3.306502	CCGCCTCTTCGCCCTATAAATTA	60.307	47.826	0.00	0.00	0.00	1.40
132	139	4.522975	GTGCCCCCATGTAGCCCC	62.523	72.222	0.00	0.00	0.00	5.80
160	170	1.898574	CAAAACTCACCAGGGCGCT	60.899	57.895	7.64	0.00	0.00	5.92
194	205	0.250901	GCCAAGAAAGCACCAGAGGA	60.251	55.000	0.00	0.00	0.00	3.71
253	264	2.288458	CGGAGTCCAAACGTAGCAAAAA	59.712	45.455	10.49	0.00	0.00	1.94
600	631	9.942850	TGAGTATTGAAGTCTTCATGTCAAATA	57.057	29.630	15.95	7.13	39.84	1.40
601	632	8.853077	TGAGTATTGAAGTCTTCATGTCAAAT	57.147	30.769	15.95	8.05	39.84	2.32
615	646	8.006590	GCTTATTGATACGCTTGAGTATTGAAG	58.993	37.037	0.00	0.00	37.43	3.02
630	661	7.761409	TGAAAGACATGGTTGCTTATTGATAC	58.239	34.615	0.00	0.00	0.00	2.24
667	698	7.509546	TCATTGGCTAGGGATAACTTTCTTAG	58.490	38.462	0.00	0.00	0.00	2.18
668	699	7.446106	TCATTGGCTAGGGATAACTTTCTTA	57.554	36.000	0.00	0.00	0.00	2.10
669	700	6.327386	TCATTGGCTAGGGATAACTTTCTT	57.673	37.500	0.00	0.00	0.00	2.52
670	701	5.975988	TCATTGGCTAGGGATAACTTTCT	57.024	39.130	0.00	0.00	0.00	2.52
671	702	6.016777	CACATCATTGGCTAGGGATAACTTTC	60.017	42.308	0.00	0.00	0.00	2.62
672	703	5.829924	CACATCATTGGCTAGGGATAACTTT	59.170	40.000	0.00	0.00	0.00	2.66
673	704	5.132648	TCACATCATTGGCTAGGGATAACTT	59.867	40.000	0.00	0.00	0.00	2.66
674	705	4.660303	TCACATCATTGGCTAGGGATAACT	59.340	41.667	0.00	0.00	0.00	2.24
675	706	4.973168	TCACATCATTGGCTAGGGATAAC	58.027	43.478	0.00	0.00	0.00	1.89
676	707	5.848286	ATCACATCATTGGCTAGGGATAA	57.152	39.130	0.00	0.00	0.00	1.75
677	708	5.848286	AATCACATCATTGGCTAGGGATA	57.152	39.130	0.00	0.00	0.00	2.59
678	709	4.736611	AATCACATCATTGGCTAGGGAT	57.263	40.909	0.00	0.00	0.00	3.85
679	710	5.132648	ACTTAATCACATCATTGGCTAGGGA	59.867	40.000	0.00	0.00	0.00	4.20
680	711	5.240183	CACTTAATCACATCATTGGCTAGGG	59.760	44.000	0.00	0.00	0.00	3.53
681	712	5.240183	CCACTTAATCACATCATTGGCTAGG	59.760	44.000	0.00	0.00	0.00	3.02
682	713	5.240183	CCCACTTAATCACATCATTGGCTAG	59.760	44.000	0.00	0.00	0.00	3.42
683	714	5.132502	CCCACTTAATCACATCATTGGCTA	58.867	41.667	0.00	0.00	0.00	3.93
840	873	9.725019	TCTCTAGTCAAAATAGCATTCTGAAAA	57.275	29.630	0.00	0.00	0.00	2.29
853	886	8.853077	TGTTTCATCACATCTCTAGTCAAAAT	57.147	30.769	0.00	0.00	0.00	1.82
886	919	5.652452	AGGAACATTTAGGATTTCCTTTCCG	59.348	40.000	16.14	3.89	45.83	4.30
980	1014	1.818060	TGCCAAACATACATGCCACTC	59.182	47.619	0.00	0.00	0.00	3.51
1001	1035	3.780294	AGTATTGTTAGGGCACAGATCCA	59.220	43.478	0.00	0.00	0.00	3.41
1015	1049	4.158394	CACATAGGCTTGCCAAGTATTGTT	59.842	41.667	14.54	0.00	46.99	2.83
1022	1056	0.813184	CCACACATAGGCTTGCCAAG	59.187	55.000	14.54	0.00	0.00	3.61
1071	1105	4.739137	GCAGCAATTCCCACTGTGTAAAAA	60.739	41.667	7.08	0.00	33.87	1.94
1229	1264	3.770040	CGTCCCTCATGGTCGCCA	61.770	66.667	1.01	1.01	38.77	5.69
1295	1330	1.067354	CCATTTCTTCACTGCTTGCCC	60.067	52.381	0.00	0.00	0.00	5.36
1303	1338	3.126001	TCAACGAGCCATTTCTTCACT	57.874	42.857	0.00	0.00	0.00	3.41
1367	1407	8.766151	GTTTAAGCAGGATAGAACATAACTAGC	58.234	37.037	0.00	0.00	0.00	3.42
1381	1422	4.600062	CAGGGGTAAAGTTTAAGCAGGAT	58.400	43.478	0.00	0.00	0.00	3.24
1449	1498	1.677552	CCTACAGCCCCAACGAACT	59.322	57.895	0.00	0.00	0.00	3.01
1487	1537	6.590357	CGAAAACCCGATGACATCAATATAC	58.410	40.000	15.58	0.95	0.00	1.47
1491	1541	2.097466	GCGAAAACCCGATGACATCAAT	59.903	45.455	15.58	0.00	0.00	2.57
1495	1546	1.029947	GGGCGAAAACCCGATGACAT	61.030	55.000	0.00	0.00	40.98	3.06
1534	1585	0.467844	ACCCATTGTGAGCACTTGCA	60.468	50.000	3.62	0.00	45.16	4.08
1537	1588	1.963515	GGAAACCCATTGTGAGCACTT	59.036	47.619	1.99	0.00	0.00	3.16
1565	1616	3.312736	AAGGGGAAAGCAAGTTCAAGA	57.687	42.857	0.00	0.00	0.00	3.02
1758	1812	8.669243	CCATCTTCTCTTATAAAACACCAACTC	58.331	37.037	0.00	0.00	0.00	3.01
1767	1821	7.749377	TGAGTCCCCATCTTCTCTTATAAAA	57.251	36.000	0.00	0.00	0.00	1.52
1809	1871	6.214412	CCTCTGTGAAGGGCCTATCTATTTAT	59.786	42.308	6.41	0.00	32.35	1.40
1892	1957	2.304761	TGACGGGAAAAGTATGCCTCTT	59.695	45.455	0.00	0.00	0.00	2.85
2097	2165	6.989759	GCCCAGTCCTGAAATTAAAAAGAAAA	59.010	34.615	0.00	0.00	0.00	2.29
2107	2175	1.342374	GGGATGCCCAGTCCTGAAATT	60.342	52.381	0.00	0.00	44.65	1.82
2299	2369	1.752498	ACATGCGGTATTCTCGTACCA	59.248	47.619	0.00	0.00	43.53	3.25
2302	2372	3.216800	ACCTACATGCGGTATTCTCGTA	58.783	45.455	5.53	0.00	31.69	3.43

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.