Multiple sequence alignment - TraesCS4B01G160500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G160500 chr4B 100.000 5074 0 0 1 5074 314653208 314648135 0.000000e+00 9371.0
1 TraesCS4B01G160500 chr4B 93.478 138 6 3 1822 1958 566413847 566413982 8.610000e-48 202.0
2 TraesCS4B01G160500 chr4B 81.013 79 14 1 4802 4880 295702397 295702320 1.530000e-05 62.1
3 TraesCS4B01G160500 chr4D 96.829 2870 66 21 1943 4794 222018940 222016078 0.000000e+00 4772.0
4 TraesCS4B01G160500 chr4D 96.763 1174 21 10 645 1816 222020156 222018998 0.000000e+00 1941.0
5 TraesCS4B01G160500 chr4D 92.734 289 20 1 4784 5072 222015302 222015015 2.830000e-112 416.0
6 TraesCS4B01G160500 chr4D 88.123 261 28 3 359 618 17534802 17535060 1.770000e-79 307.0
7 TraesCS4B01G160500 chr4A 96.377 2650 83 7 2295 4942 270325314 270322676 0.000000e+00 4349.0
8 TraesCS4B01G160500 chr4A 96.584 1171 31 6 647 1816 270328049 270326887 0.000000e+00 1932.0
9 TraesCS4B01G160500 chr4A 92.562 363 9 7 1943 2297 270326829 270326477 5.860000e-139 505.0
10 TraesCS4B01G160500 chr4A 92.537 134 7 2 4939 5069 270321561 270321428 6.710000e-44 189.0
11 TraesCS4B01G160500 chr4A 86.441 59 8 0 4799 4857 314669964 314670022 1.180000e-06 65.8
12 TraesCS4B01G160500 chr7D 90.244 246 22 2 374 618 459742873 459743117 2.280000e-83 320.0
13 TraesCS4B01G160500 chr7D 89.837 246 21 4 374 618 270700359 270700117 3.810000e-81 313.0
14 TraesCS4B01G160500 chr3D 89.516 248 25 1 371 618 213157222 213157468 3.810000e-81 313.0
15 TraesCS4B01G160500 chr2B 89.837 246 20 4 374 618 205159500 205159259 1.370000e-80 311.0
16 TraesCS4B01G160500 chr2B 89.431 246 23 3 374 618 384650891 384650648 1.770000e-79 307.0
17 TraesCS4B01G160500 chr2B 83.553 152 21 3 62 213 689549404 689549551 6.850000e-29 139.0
18 TraesCS4B01G160500 chr2B 90.741 54 5 0 173 226 220961531 220961584 7.050000e-09 73.1
19 TraesCS4B01G160500 chr5D 88.077 260 30 1 359 618 170735866 170735608 1.770000e-79 307.0
20 TraesCS4B01G160500 chr5D 89.388 245 24 2 374 618 177985782 177985540 1.770000e-79 307.0
21 TraesCS4B01G160500 chr2D 88.123 261 27 3 359 618 316662134 316662391 1.770000e-79 307.0
22 TraesCS4B01G160500 chr2D 96.800 125 4 0 1822 1946 253820581 253820457 5.150000e-50 209.0
23 TraesCS4B01G160500 chr2D 85.784 204 20 8 34 232 281709178 281709377 1.850000e-49 207.0
24 TraesCS4B01G160500 chr7B 96.063 127 5 0 1822 1948 33130220 33130346 1.850000e-49 207.0
25 TraesCS4B01G160500 chr1A 96.063 127 5 0 1822 1948 460350512 460350638 1.850000e-49 207.0
26 TraesCS4B01G160500 chr1A 96.063 127 5 0 1822 1948 530167074 530166948 1.850000e-49 207.0
27 TraesCS4B01G160500 chr1D 96.748 123 4 0 1822 1944 463745360 463745482 6.660000e-49 206.0
28 TraesCS4B01G160500 chr1D 96.748 123 4 0 1822 1944 477357385 477357507 6.660000e-49 206.0
29 TraesCS4B01G160500 chr5B 93.478 138 6 3 1822 1958 478813491 478813626 8.610000e-48 202.0
30 TraesCS4B01G160500 chr3B 95.968 124 3 2 1822 1944 583843950 583843828 3.100000e-47 200.0
31 TraesCS4B01G160500 chr3B 86.022 186 21 4 1 184 441274492 441274674 1.440000e-45 195.0
32 TraesCS4B01G160500 chr3B 85.714 182 22 3 1 181 262651883 262651705 6.710000e-44 189.0
33 TraesCS4B01G160500 chr3B 84.409 186 24 4 1 184 305807783 305807965 1.450000e-40 178.0
34 TraesCS4B01G160500 chr1B 85.204 196 22 5 35 226 559948708 559948516 1.440000e-45 195.0
35 TraesCS4B01G160500 chrUn 86.260 131 14 3 96 223 247470988 247471117 6.850000e-29 139.0
36 TraesCS4B01G160500 chrUn 86.260 131 14 3 96 223 447274283 447274412 6.850000e-29 139.0
37 TraesCS4B01G160500 chr7A 86.719 128 13 3 99 223 171753234 171753108 6.850000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G160500 chr4B 314648135 314653208 5073 True 9371.000000 9371 100.000 1 5074 1 chr4B.!!$R2 5073
1 TraesCS4B01G160500 chr4D 222015015 222020156 5141 True 2376.333333 4772 95.442 645 5072 3 chr4D.!!$R1 4427
2 TraesCS4B01G160500 chr4A 270321428 270328049 6621 True 1743.750000 4349 94.515 647 5069 4 chr4A.!!$R1 4422

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.033601 TGCCCACAACTGAACCAACT 60.034 50.0 0.00 0.00 0.00 3.16 F
1172 1181 0.030369 CCGCCCGTCATAGTGAGTAC 59.970 60.0 0.00 0.00 0.00 2.73 F
1940 1950 0.032813 ACTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
1943 1953 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 F
2861 4045 0.752054 GGAGAGCCATCACTCAGGAG 59.248 60.0 0.00 0.00 39.26 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 1931 0.032813 TCCCTCCGTCCGGAAATAGT 60.033 55.000 5.23 0.0 44.66 2.12 R
2534 3718 0.110486 TCTTTCACTGTGGGGAAGGC 59.890 55.000 8.11 0.0 0.00 4.35 R
3710 4894 0.105246 TTCCAAAAGCCCACCCACAT 60.105 50.000 0.00 0.0 0.00 3.21 R
3841 5025 5.337578 GCCATAAAATGTCAAAAGGCCTA 57.662 39.130 5.16 0.0 34.94 3.93 R
4859 6857 2.741517 ACAGCCAAAGTTGCACAAAAAC 59.258 40.909 0.00 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.701029 CGCAACATGATTTTTAATGGGAC 57.299 39.130 0.00 0.00 0.00 4.46
23 24 5.410067 CGCAACATGATTTTTAATGGGACT 58.590 37.500 0.00 0.00 0.00 3.85
24 25 5.868801 CGCAACATGATTTTTAATGGGACTT 59.131 36.000 0.00 0.00 0.00 3.01
25 26 6.368516 CGCAACATGATTTTTAATGGGACTTT 59.631 34.615 0.00 0.00 0.00 2.66
26 27 7.520686 GCAACATGATTTTTAATGGGACTTTG 58.479 34.615 0.00 0.00 0.00 2.77
27 28 7.361116 GCAACATGATTTTTAATGGGACTTTGG 60.361 37.037 0.00 0.00 0.00 3.28
28 29 6.710278 ACATGATTTTTAATGGGACTTTGGG 58.290 36.000 0.00 0.00 0.00 4.12
29 30 5.159273 TGATTTTTAATGGGACTTTGGGC 57.841 39.130 0.00 0.00 0.00 5.36
30 31 4.843516 TGATTTTTAATGGGACTTTGGGCT 59.156 37.500 0.00 0.00 0.00 5.19
31 32 6.019748 TGATTTTTAATGGGACTTTGGGCTA 58.980 36.000 0.00 0.00 0.00 3.93
32 33 6.671779 TGATTTTTAATGGGACTTTGGGCTAT 59.328 34.615 0.00 0.00 0.00 2.97
33 34 6.538945 TTTTTAATGGGACTTTGGGCTATC 57.461 37.500 0.00 0.00 0.00 2.08
34 35 4.871871 TTAATGGGACTTTGGGCTATCA 57.128 40.909 0.00 0.00 0.00 2.15
35 36 3.756082 AATGGGACTTTGGGCTATCAA 57.244 42.857 0.00 0.00 0.00 2.57
36 37 3.756082 ATGGGACTTTGGGCTATCAAA 57.244 42.857 0.00 0.00 35.60 2.69
37 38 3.756082 TGGGACTTTGGGCTATCAAAT 57.244 42.857 0.00 0.00 36.24 2.32
38 39 4.059773 TGGGACTTTGGGCTATCAAATT 57.940 40.909 0.00 0.00 36.24 1.82
39 40 4.424842 TGGGACTTTGGGCTATCAAATTT 58.575 39.130 0.00 0.00 36.24 1.82
40 41 5.584913 TGGGACTTTGGGCTATCAAATTTA 58.415 37.500 0.00 0.00 36.24 1.40
41 42 6.019748 TGGGACTTTGGGCTATCAAATTTAA 58.980 36.000 0.00 0.00 36.24 1.52
42 43 6.671779 TGGGACTTTGGGCTATCAAATTTAAT 59.328 34.615 0.00 0.00 36.24 1.40
43 44 7.181845 TGGGACTTTGGGCTATCAAATTTAATT 59.818 33.333 0.00 0.00 36.24 1.40
44 45 7.495606 GGGACTTTGGGCTATCAAATTTAATTG 59.504 37.037 0.00 0.00 36.24 2.32
45 46 8.040727 GGACTTTGGGCTATCAAATTTAATTGT 58.959 33.333 0.00 0.00 36.24 2.71
50 51 9.814899 TTGGGCTATCAAATTTAATTGTATGTG 57.185 29.630 0.00 0.00 0.00 3.21
51 52 8.976353 TGGGCTATCAAATTTAATTGTATGTGT 58.024 29.630 0.00 0.00 0.00 3.72
63 64 9.719355 TTTAATTGTATGTGTACATCTCACTGT 57.281 29.630 0.00 0.00 40.35 3.55
65 66 8.932945 AATTGTATGTGTACATCTCACTGTAG 57.067 34.615 0.00 0.00 40.35 2.74
66 67 7.696992 TTGTATGTGTACATCTCACTGTAGA 57.303 36.000 0.00 0.00 40.35 2.59
67 68 7.881775 TGTATGTGTACATCTCACTGTAGAT 57.118 36.000 0.00 0.00 35.94 1.98
68 69 8.974060 TGTATGTGTACATCTCACTGTAGATA 57.026 34.615 0.00 0.00 35.94 1.98
69 70 9.403583 TGTATGTGTACATCTCACTGTAGATAA 57.596 33.333 0.00 0.00 35.94 1.75
70 71 9.666626 GTATGTGTACATCTCACTGTAGATAAC 57.333 37.037 0.00 0.00 37.76 1.89
71 72 7.696992 TGTGTACATCTCACTGTAGATAACA 57.303 36.000 0.00 0.00 34.40 2.41
72 73 8.117813 TGTGTACATCTCACTGTAGATAACAA 57.882 34.615 0.00 0.00 37.74 2.83
73 74 8.244113 TGTGTACATCTCACTGTAGATAACAAG 58.756 37.037 0.00 0.00 37.74 3.16
74 75 7.221067 GTGTACATCTCACTGTAGATAACAAGC 59.779 40.741 0.00 0.00 37.74 4.01
75 76 5.665459 ACATCTCACTGTAGATAACAAGCC 58.335 41.667 0.00 0.00 37.74 4.35
76 77 5.187772 ACATCTCACTGTAGATAACAAGCCA 59.812 40.000 0.00 0.00 37.74 4.75
77 78 5.939764 TCTCACTGTAGATAACAAGCCAT 57.060 39.130 0.00 0.00 37.74 4.40
78 79 5.907207 TCTCACTGTAGATAACAAGCCATC 58.093 41.667 0.00 0.00 37.74 3.51
79 80 4.682787 TCACTGTAGATAACAAGCCATCG 58.317 43.478 0.00 0.00 37.74 3.84
80 81 4.159693 TCACTGTAGATAACAAGCCATCGT 59.840 41.667 0.00 0.00 37.74 3.73
81 82 4.870426 CACTGTAGATAACAAGCCATCGTT 59.130 41.667 0.00 0.00 37.74 3.85
82 83 5.005779 CACTGTAGATAACAAGCCATCGTTC 59.994 44.000 0.00 0.00 37.74 3.95
83 84 5.105310 ACTGTAGATAACAAGCCATCGTTCT 60.105 40.000 0.00 0.00 37.74 3.01
84 85 5.730550 TGTAGATAACAAGCCATCGTTCTT 58.269 37.500 0.00 0.00 34.29 2.52
85 86 5.580691 TGTAGATAACAAGCCATCGTTCTTG 59.419 40.000 0.00 0.00 43.79 3.02
96 97 9.781834 CAAGCCATCGTTCTTGTTTATTATTAA 57.218 29.630 0.00 0.00 36.01 1.40
99 100 9.233232 GCCATCGTTCTTGTTTATTATTAAAGG 57.767 33.333 0.00 0.00 0.00 3.11
100 101 9.730420 CCATCGTTCTTGTTTATTATTAAAGGG 57.270 33.333 0.00 0.00 0.00 3.95
101 102 9.233232 CATCGTTCTTGTTTATTATTAAAGGGC 57.767 33.333 0.00 0.00 0.00 5.19
102 103 7.465989 TCGTTCTTGTTTATTATTAAAGGGCG 58.534 34.615 0.00 0.00 0.00 6.13
103 104 7.119553 TCGTTCTTGTTTATTATTAAAGGGCGT 59.880 33.333 0.00 0.00 0.00 5.68
104 105 7.751793 CGTTCTTGTTTATTATTAAAGGGCGTT 59.248 33.333 0.00 0.00 0.00 4.84
122 123 9.713713 AAGGGCGTTAAATTTGTTATTTTATGT 57.286 25.926 0.00 0.00 0.00 2.29
123 124 9.145865 AGGGCGTTAAATTTGTTATTTTATGTG 57.854 29.630 0.00 0.00 0.00 3.21
124 125 7.900864 GGGCGTTAAATTTGTTATTTTATGTGC 59.099 33.333 0.00 0.00 0.00 4.57
125 126 8.652463 GGCGTTAAATTTGTTATTTTATGTGCT 58.348 29.630 0.00 0.00 0.00 4.40
130 131 6.983474 ATTTGTTATTTTATGTGCTTGCCC 57.017 33.333 0.00 0.00 0.00 5.36
131 132 5.474578 TTGTTATTTTATGTGCTTGCCCA 57.525 34.783 0.00 0.00 0.00 5.36
132 133 4.815269 TGTTATTTTATGTGCTTGCCCAC 58.185 39.130 0.00 0.00 36.28 4.61
137 138 3.524014 TGTGCTTGCCCACAACTG 58.476 55.556 0.15 0.00 42.33 3.16
138 139 1.077140 TGTGCTTGCCCACAACTGA 60.077 52.632 0.15 0.00 42.33 3.41
139 140 0.682532 TGTGCTTGCCCACAACTGAA 60.683 50.000 0.15 0.00 42.33 3.02
140 141 0.249031 GTGCTTGCCCACAACTGAAC 60.249 55.000 0.00 0.00 35.80 3.18
141 142 1.363807 GCTTGCCCACAACTGAACC 59.636 57.895 0.00 0.00 0.00 3.62
142 143 1.391157 GCTTGCCCACAACTGAACCA 61.391 55.000 0.00 0.00 0.00 3.67
143 144 1.110442 CTTGCCCACAACTGAACCAA 58.890 50.000 0.00 0.00 0.00 3.67
144 145 0.820871 TTGCCCACAACTGAACCAAC 59.179 50.000 0.00 0.00 0.00 3.77
145 146 0.033601 TGCCCACAACTGAACCAACT 60.034 50.000 0.00 0.00 0.00 3.16
146 147 1.213182 TGCCCACAACTGAACCAACTA 59.787 47.619 0.00 0.00 0.00 2.24
147 148 2.303175 GCCCACAACTGAACCAACTAA 58.697 47.619 0.00 0.00 0.00 2.24
148 149 2.691011 GCCCACAACTGAACCAACTAAA 59.309 45.455 0.00 0.00 0.00 1.85
149 150 3.490249 GCCCACAACTGAACCAACTAAAC 60.490 47.826 0.00 0.00 0.00 2.01
150 151 3.067601 CCCACAACTGAACCAACTAAACC 59.932 47.826 0.00 0.00 0.00 3.27
151 152 3.697045 CCACAACTGAACCAACTAAACCA 59.303 43.478 0.00 0.00 0.00 3.67
152 153 4.340950 CCACAACTGAACCAACTAAACCAT 59.659 41.667 0.00 0.00 0.00 3.55
153 154 5.280945 CACAACTGAACCAACTAAACCATG 58.719 41.667 0.00 0.00 0.00 3.66
154 155 4.340950 ACAACTGAACCAACTAAACCATGG 59.659 41.667 11.19 11.19 40.16 3.66
155 156 4.447138 ACTGAACCAACTAAACCATGGA 57.553 40.909 21.47 0.00 37.66 3.41
156 157 4.998051 ACTGAACCAACTAAACCATGGAT 58.002 39.130 21.47 2.68 37.66 3.41
157 158 5.393866 ACTGAACCAACTAAACCATGGATT 58.606 37.500 21.47 16.43 37.66 3.01
158 159 5.838521 ACTGAACCAACTAAACCATGGATTT 59.161 36.000 21.47 16.82 37.66 2.17
159 160 6.326323 ACTGAACCAACTAAACCATGGATTTT 59.674 34.615 21.47 12.21 37.66 1.82
160 161 6.754193 TGAACCAACTAAACCATGGATTTTC 58.246 36.000 21.47 12.57 37.66 2.29
161 162 6.553100 TGAACCAACTAAACCATGGATTTTCT 59.447 34.615 21.47 0.00 37.66 2.52
162 163 6.994421 ACCAACTAAACCATGGATTTTCTT 57.006 33.333 21.47 0.00 37.66 2.52
163 164 7.373617 ACCAACTAAACCATGGATTTTCTTT 57.626 32.000 21.47 9.88 37.66 2.52
164 165 7.801104 ACCAACTAAACCATGGATTTTCTTTT 58.199 30.769 21.47 9.11 37.66 2.27
165 166 7.931407 ACCAACTAAACCATGGATTTTCTTTTC 59.069 33.333 21.47 0.00 37.66 2.29
166 167 7.930865 CCAACTAAACCATGGATTTTCTTTTCA 59.069 33.333 21.47 0.00 36.27 2.69
167 168 9.323985 CAACTAAACCATGGATTTTCTTTTCAA 57.676 29.630 21.47 0.00 0.00 2.69
169 170 9.492973 ACTAAACCATGGATTTTCTTTTCAATG 57.507 29.630 21.47 1.53 0.00 2.82
170 171 9.492973 CTAAACCATGGATTTTCTTTTCAATGT 57.507 29.630 21.47 0.00 0.00 2.71
171 172 7.733402 AACCATGGATTTTCTTTTCAATGTG 57.267 32.000 21.47 0.00 0.00 3.21
172 173 7.065120 ACCATGGATTTTCTTTTCAATGTGA 57.935 32.000 21.47 0.00 0.00 3.58
173 174 7.507829 ACCATGGATTTTCTTTTCAATGTGAA 58.492 30.769 21.47 0.00 34.03 3.18
174 175 7.442062 ACCATGGATTTTCTTTTCAATGTGAAC 59.558 33.333 21.47 0.00 35.89 3.18
175 176 7.441760 CCATGGATTTTCTTTTCAATGTGAACA 59.558 33.333 5.56 0.00 35.89 3.18
176 177 8.995220 CATGGATTTTCTTTTCAATGTGAACAT 58.005 29.630 0.00 0.00 35.89 2.71
177 178 8.367943 TGGATTTTCTTTTCAATGTGAACATG 57.632 30.769 0.00 0.00 35.89 3.21
178 179 8.202811 TGGATTTTCTTTTCAATGTGAACATGA 58.797 29.630 0.00 0.00 35.89 3.07
179 180 9.211485 GGATTTTCTTTTCAATGTGAACATGAT 57.789 29.630 0.00 0.00 35.89 2.45
185 186 9.195411 TCTTTTCAATGTGAACATGATTTAAGC 57.805 29.630 0.00 0.00 35.89 3.09
186 187 7.565450 TTTCAATGTGAACATGATTTAAGCG 57.435 32.000 0.00 0.00 35.89 4.68
187 188 6.252967 TCAATGTGAACATGATTTAAGCGT 57.747 33.333 0.00 0.00 36.56 5.07
188 189 6.085573 TCAATGTGAACATGATTTAAGCGTG 58.914 36.000 0.00 0.50 36.56 5.34
189 190 5.627499 ATGTGAACATGATTTAAGCGTGT 57.373 34.783 1.92 1.92 37.09 4.49
190 191 5.029650 TGTGAACATGATTTAAGCGTGTC 57.970 39.130 8.55 3.84 34.59 3.67
191 192 4.754618 TGTGAACATGATTTAAGCGTGTCT 59.245 37.500 8.55 0.02 34.59 3.41
192 193 5.107104 TGTGAACATGATTTAAGCGTGTCTC 60.107 40.000 8.55 8.96 34.59 3.36
193 194 5.120830 GTGAACATGATTTAAGCGTGTCTCT 59.879 40.000 8.55 0.00 34.59 3.10
194 195 5.120674 TGAACATGATTTAAGCGTGTCTCTG 59.879 40.000 8.55 0.00 34.59 3.35
195 196 3.372206 ACATGATTTAAGCGTGTCTCTGC 59.628 43.478 1.92 0.00 29.98 4.26
196 197 1.992667 TGATTTAAGCGTGTCTCTGCG 59.007 47.619 0.00 0.00 35.87 5.18
201 202 3.121030 GCGTGTCTCTGCGCCATT 61.121 61.111 4.18 0.00 46.93 3.16
202 203 2.680913 GCGTGTCTCTGCGCCATTT 61.681 57.895 4.18 0.00 46.93 2.32
203 204 1.133253 CGTGTCTCTGCGCCATTTG 59.867 57.895 4.18 0.00 0.00 2.32
204 205 1.503542 GTGTCTCTGCGCCATTTGG 59.496 57.895 4.18 0.00 38.53 3.28
214 215 2.884367 CCATTTGGCGCAACGGAT 59.116 55.556 10.83 0.00 0.00 4.18
215 216 1.226660 CCATTTGGCGCAACGGATC 60.227 57.895 10.83 0.00 0.00 3.36
216 217 1.226660 CATTTGGCGCAACGGATCC 60.227 57.895 10.83 0.00 0.00 3.36
217 218 1.677300 ATTTGGCGCAACGGATCCA 60.677 52.632 13.41 0.00 0.00 3.41
218 219 1.933115 ATTTGGCGCAACGGATCCAC 61.933 55.000 13.41 0.00 0.00 4.02
219 220 3.545124 TTGGCGCAACGGATCCACT 62.545 57.895 13.41 0.00 0.00 4.00
220 221 2.173758 TTGGCGCAACGGATCCACTA 62.174 55.000 13.41 0.00 0.00 2.74
221 222 1.883084 GGCGCAACGGATCCACTAG 60.883 63.158 13.41 0.00 0.00 2.57
222 223 1.153628 GCGCAACGGATCCACTAGT 60.154 57.895 13.41 0.00 0.00 2.57
223 224 0.101759 GCGCAACGGATCCACTAGTA 59.898 55.000 13.41 0.00 0.00 1.82
224 225 1.269621 GCGCAACGGATCCACTAGTAT 60.270 52.381 13.41 0.00 0.00 2.12
225 226 2.030540 GCGCAACGGATCCACTAGTATA 60.031 50.000 13.41 0.00 0.00 1.47
226 227 3.367087 GCGCAACGGATCCACTAGTATAT 60.367 47.826 13.41 0.00 0.00 0.86
227 228 4.142534 GCGCAACGGATCCACTAGTATATA 60.143 45.833 13.41 0.00 0.00 0.86
228 229 5.450137 GCGCAACGGATCCACTAGTATATAT 60.450 44.000 13.41 0.00 0.00 0.86
229 230 6.238566 GCGCAACGGATCCACTAGTATATATA 60.239 42.308 13.41 0.00 0.00 0.86
230 231 7.521748 GCGCAACGGATCCACTAGTATATATAT 60.522 40.741 13.41 0.00 0.00 0.86
231 232 8.996271 CGCAACGGATCCACTAGTATATATATA 58.004 37.037 13.41 0.00 0.00 0.86
243 244 8.954350 ACTAGTATATATATATAAAGCGGGGCG 58.046 37.037 13.00 0.00 0.00 6.13
244 245 9.170734 CTAGTATATATATATAAAGCGGGGCGA 57.829 37.037 13.00 0.00 0.00 5.54
245 246 8.413309 AGTATATATATATAAAGCGGGGCGAA 57.587 34.615 13.00 0.00 0.00 4.70
246 247 8.863086 AGTATATATATATAAAGCGGGGCGAAA 58.137 33.333 13.00 0.00 0.00 3.46
247 248 9.136952 GTATATATATATAAAGCGGGGCGAAAG 57.863 37.037 13.00 0.00 0.00 2.62
262 263 3.658351 CGAAAGCCCTTTCTTACATCG 57.342 47.619 16.21 1.51 44.93 3.84
263 264 3.259064 CGAAAGCCCTTTCTTACATCGA 58.741 45.455 16.21 0.00 44.93 3.59
264 265 3.307242 CGAAAGCCCTTTCTTACATCGAG 59.693 47.826 16.21 0.00 44.93 4.04
265 266 2.317530 AGCCCTTTCTTACATCGAGC 57.682 50.000 0.00 0.00 0.00 5.03
266 267 1.834263 AGCCCTTTCTTACATCGAGCT 59.166 47.619 0.00 0.00 0.00 4.09
267 268 1.936547 GCCCTTTCTTACATCGAGCTG 59.063 52.381 0.00 0.00 0.00 4.24
268 269 1.936547 CCCTTTCTTACATCGAGCTGC 59.063 52.381 0.00 0.00 0.00 5.25
269 270 2.419297 CCCTTTCTTACATCGAGCTGCT 60.419 50.000 0.00 0.00 0.00 4.24
270 271 2.606725 CCTTTCTTACATCGAGCTGCTG 59.393 50.000 7.01 0.00 0.00 4.41
271 272 1.645034 TTCTTACATCGAGCTGCTGC 58.355 50.000 7.01 7.62 40.05 5.25
272 273 0.179100 TCTTACATCGAGCTGCTGCC 60.179 55.000 7.01 3.10 40.80 4.85
273 274 0.460811 CTTACATCGAGCTGCTGCCA 60.461 55.000 7.01 0.00 40.80 4.92
274 275 0.178767 TTACATCGAGCTGCTGCCAT 59.821 50.000 7.01 0.00 40.80 4.40
275 276 0.531311 TACATCGAGCTGCTGCCATG 60.531 55.000 7.01 13.71 40.80 3.66
276 277 1.818363 CATCGAGCTGCTGCCATGT 60.818 57.895 7.01 0.00 40.80 3.21
277 278 0.531311 CATCGAGCTGCTGCCATGTA 60.531 55.000 7.01 0.00 40.80 2.29
278 279 0.395686 ATCGAGCTGCTGCCATGTAT 59.604 50.000 7.01 0.00 40.80 2.29
279 280 0.249615 TCGAGCTGCTGCCATGTATC 60.250 55.000 7.01 1.14 40.80 2.24
280 281 1.554891 CGAGCTGCTGCCATGTATCG 61.555 60.000 7.01 9.85 40.80 2.92
281 282 1.226686 GAGCTGCTGCCATGTATCGG 61.227 60.000 7.01 0.00 40.80 4.18
282 283 2.256591 GCTGCTGCCATGTATCGGG 61.257 63.158 3.85 0.00 0.00 5.14
287 288 3.349006 GCCATGTATCGGGCTGCG 61.349 66.667 0.00 0.00 46.74 5.18
288 289 2.421314 CCATGTATCGGGCTGCGA 59.579 61.111 0.00 0.00 0.00 5.10
289 290 1.227527 CCATGTATCGGGCTGCGAA 60.228 57.895 0.00 0.00 0.00 4.70
290 291 0.603707 CCATGTATCGGGCTGCGAAT 60.604 55.000 0.00 0.00 0.00 3.34
291 292 1.337728 CCATGTATCGGGCTGCGAATA 60.338 52.381 0.00 0.00 0.00 1.75
292 293 2.621338 CATGTATCGGGCTGCGAATAT 58.379 47.619 0.00 0.00 0.00 1.28
293 294 2.078849 TGTATCGGGCTGCGAATATG 57.921 50.000 0.00 0.00 0.00 1.78
294 295 0.721718 GTATCGGGCTGCGAATATGC 59.278 55.000 0.00 0.00 0.00 3.14
295 296 0.320050 TATCGGGCTGCGAATATGCA 59.680 50.000 0.00 0.00 43.95 3.96
296 297 0.321919 ATCGGGCTGCGAATATGCAT 60.322 50.000 3.79 3.79 45.26 3.96
297 298 0.950555 TCGGGCTGCGAATATGCATC 60.951 55.000 0.19 0.00 45.26 3.91
298 299 0.952497 CGGGCTGCGAATATGCATCT 60.952 55.000 0.19 0.00 45.26 2.90
299 300 0.801251 GGGCTGCGAATATGCATCTC 59.199 55.000 0.19 0.00 45.26 2.75
300 301 0.801251 GGCTGCGAATATGCATCTCC 59.199 55.000 0.19 0.00 45.26 3.71
301 302 1.516161 GCTGCGAATATGCATCTCCA 58.484 50.000 0.19 1.64 45.26 3.86
302 303 1.875514 GCTGCGAATATGCATCTCCAA 59.124 47.619 0.19 0.00 45.26 3.53
303 304 2.291465 GCTGCGAATATGCATCTCCAAA 59.709 45.455 0.19 0.00 45.26 3.28
304 305 3.243168 GCTGCGAATATGCATCTCCAAAA 60.243 43.478 0.19 0.00 45.26 2.44
305 306 4.285292 CTGCGAATATGCATCTCCAAAAC 58.715 43.478 0.19 0.00 45.26 2.43
306 307 3.066621 TGCGAATATGCATCTCCAAAACC 59.933 43.478 0.19 0.00 40.62 3.27
307 308 3.849645 GCGAATATGCATCTCCAAAACCG 60.850 47.826 0.19 0.00 34.15 4.44
308 309 3.303990 CGAATATGCATCTCCAAAACCGG 60.304 47.826 0.19 0.00 0.00 5.28
309 310 1.388547 TATGCATCTCCAAAACCGGC 58.611 50.000 0.19 0.00 0.00 6.13
310 311 1.656818 ATGCATCTCCAAAACCGGCG 61.657 55.000 0.00 0.00 0.00 6.46
311 312 2.038269 GCATCTCCAAAACCGGCGA 61.038 57.895 9.30 0.00 0.00 5.54
312 313 1.794222 CATCTCCAAAACCGGCGAC 59.206 57.895 9.30 0.00 0.00 5.19
313 314 1.376812 ATCTCCAAAACCGGCGACC 60.377 57.895 9.30 0.00 0.00 4.79
314 315 2.814913 ATCTCCAAAACCGGCGACCC 62.815 60.000 9.30 0.00 0.00 4.46
333 334 2.143925 CCGAATCGGGAATTAAGAGGC 58.856 52.381 14.91 0.00 44.15 4.70
334 335 2.484770 CCGAATCGGGAATTAAGAGGCA 60.485 50.000 14.91 0.00 44.15 4.75
335 336 3.202906 CGAATCGGGAATTAAGAGGCAA 58.797 45.455 0.00 0.00 0.00 4.52
336 337 3.248602 CGAATCGGGAATTAAGAGGCAAG 59.751 47.826 0.00 0.00 0.00 4.01
337 338 4.451900 GAATCGGGAATTAAGAGGCAAGA 58.548 43.478 0.00 0.00 0.00 3.02
338 339 3.543680 TCGGGAATTAAGAGGCAAGAG 57.456 47.619 0.00 0.00 0.00 2.85
339 340 3.104512 TCGGGAATTAAGAGGCAAGAGA 58.895 45.455 0.00 0.00 0.00 3.10
340 341 3.133003 TCGGGAATTAAGAGGCAAGAGAG 59.867 47.826 0.00 0.00 0.00 3.20
341 342 3.133003 CGGGAATTAAGAGGCAAGAGAGA 59.867 47.826 0.00 0.00 0.00 3.10
342 343 4.202305 CGGGAATTAAGAGGCAAGAGAGAT 60.202 45.833 0.00 0.00 0.00 2.75
343 344 5.062528 GGGAATTAAGAGGCAAGAGAGATG 58.937 45.833 0.00 0.00 0.00 2.90
344 345 5.062528 GGAATTAAGAGGCAAGAGAGATGG 58.937 45.833 0.00 0.00 0.00 3.51
345 346 5.163258 GGAATTAAGAGGCAAGAGAGATGGA 60.163 44.000 0.00 0.00 0.00 3.41
346 347 5.549742 ATTAAGAGGCAAGAGAGATGGAG 57.450 43.478 0.00 0.00 0.00 3.86
347 348 2.844654 AGAGGCAAGAGAGATGGAGA 57.155 50.000 0.00 0.00 0.00 3.71
348 349 2.387757 AGAGGCAAGAGAGATGGAGAC 58.612 52.381 0.00 0.00 0.00 3.36
349 350 1.066908 GAGGCAAGAGAGATGGAGACG 59.933 57.143 0.00 0.00 0.00 4.18
350 351 0.529555 GGCAAGAGAGATGGAGACGC 60.530 60.000 0.00 0.00 0.00 5.19
351 352 0.174389 GCAAGAGAGATGGAGACGCA 59.826 55.000 0.00 0.00 0.00 5.24
352 353 1.919918 CAAGAGAGATGGAGACGCAC 58.080 55.000 0.00 0.00 0.00 5.34
353 354 0.453793 AAGAGAGATGGAGACGCACG 59.546 55.000 0.00 0.00 0.00 5.34
354 355 0.393132 AGAGAGATGGAGACGCACGA 60.393 55.000 0.00 0.00 0.00 4.35
355 356 0.452184 GAGAGATGGAGACGCACGAA 59.548 55.000 0.00 0.00 0.00 3.85
356 357 0.453793 AGAGATGGAGACGCACGAAG 59.546 55.000 0.00 0.00 0.00 3.79
357 358 0.452184 GAGATGGAGACGCACGAAGA 59.548 55.000 0.00 0.00 0.00 2.87
358 359 0.453793 AGATGGAGACGCACGAAGAG 59.546 55.000 0.00 0.00 0.00 2.85
359 360 0.452184 GATGGAGACGCACGAAGAGA 59.548 55.000 0.00 0.00 0.00 3.10
360 361 0.888619 ATGGAGACGCACGAAGAGAA 59.111 50.000 0.00 0.00 0.00 2.87
361 362 0.671796 TGGAGACGCACGAAGAGAAA 59.328 50.000 0.00 0.00 0.00 2.52
362 363 1.335964 TGGAGACGCACGAAGAGAAAG 60.336 52.381 0.00 0.00 0.00 2.62
363 364 1.341606 GAGACGCACGAAGAGAAAGG 58.658 55.000 0.00 0.00 0.00 3.11
364 365 0.959553 AGACGCACGAAGAGAAAGGA 59.040 50.000 0.00 0.00 0.00 3.36
365 366 1.068194 AGACGCACGAAGAGAAAGGAG 60.068 52.381 0.00 0.00 0.00 3.69
366 367 0.959553 ACGCACGAAGAGAAAGGAGA 59.040 50.000 0.00 0.00 0.00 3.71
367 368 1.336056 ACGCACGAAGAGAAAGGAGAC 60.336 52.381 0.00 0.00 0.00 3.36
369 370 2.333014 GCACGAAGAGAAAGGAGACTG 58.667 52.381 0.00 0.00 42.68 3.51
370 371 2.029828 GCACGAAGAGAAAGGAGACTGA 60.030 50.000 0.00 0.00 42.68 3.41
371 372 3.553096 GCACGAAGAGAAAGGAGACTGAA 60.553 47.826 0.00 0.00 42.68 3.02
372 373 4.233789 CACGAAGAGAAAGGAGACTGAAG 58.766 47.826 0.00 0.00 42.68 3.02
373 374 3.892588 ACGAAGAGAAAGGAGACTGAAGT 59.107 43.478 0.00 0.00 42.68 3.01
374 375 5.048643 CACGAAGAGAAAGGAGACTGAAGTA 60.049 44.000 0.00 0.00 42.68 2.24
375 376 5.048573 ACGAAGAGAAAGGAGACTGAAGTAC 60.049 44.000 0.00 0.00 42.68 2.73
376 377 5.620429 CGAAGAGAAAGGAGACTGAAGTACC 60.620 48.000 0.00 0.00 42.68 3.34
377 378 4.090819 AGAGAAAGGAGACTGAAGTACCC 58.909 47.826 0.00 0.00 42.68 3.69
378 379 3.174779 AGAAAGGAGACTGAAGTACCCC 58.825 50.000 0.00 0.00 42.68 4.95
379 380 1.954035 AAGGAGACTGAAGTACCCCC 58.046 55.000 0.00 0.00 42.68 5.40
380 381 1.094269 AGGAGACTGAAGTACCCCCT 58.906 55.000 0.00 0.00 41.13 4.79
381 382 1.007359 AGGAGACTGAAGTACCCCCTC 59.993 57.143 0.00 0.00 41.13 4.30
382 383 1.487300 GAGACTGAAGTACCCCCTCC 58.513 60.000 0.00 0.00 0.00 4.30
383 384 0.324460 AGACTGAAGTACCCCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
384 385 1.305887 ACTGAAGTACCCCCTCCGG 60.306 63.158 0.00 0.00 0.00 5.14
385 386 1.305887 CTGAAGTACCCCCTCCGGT 60.306 63.158 0.00 0.00 40.13 5.28
386 387 1.305549 TGAAGTACCCCCTCCGGTC 60.306 63.158 0.00 0.00 37.34 4.79
387 388 2.040114 AAGTACCCCCTCCGGTCC 59.960 66.667 0.00 0.00 37.34 4.46
388 389 2.526831 GAAGTACCCCCTCCGGTCCT 62.527 65.000 0.00 0.00 37.34 3.85
389 390 2.040114 GTACCCCCTCCGGTCCTT 59.960 66.667 0.00 0.00 37.34 3.36
390 391 1.614525 GTACCCCCTCCGGTCCTTT 60.615 63.158 0.00 0.00 37.34 3.11
391 392 1.161598 TACCCCCTCCGGTCCTTTT 59.838 57.895 0.00 0.00 37.34 2.27
392 393 0.476219 TACCCCCTCCGGTCCTTTTT 60.476 55.000 0.00 0.00 37.34 1.94
393 394 0.476219 ACCCCCTCCGGTCCTTTTTA 60.476 55.000 0.00 0.00 0.00 1.52
394 395 0.034767 CCCCCTCCGGTCCTTTTTAC 60.035 60.000 0.00 0.00 0.00 2.01
395 396 0.989602 CCCCTCCGGTCCTTTTTACT 59.010 55.000 0.00 0.00 0.00 2.24
396 397 2.190538 CCCCTCCGGTCCTTTTTACTA 58.809 52.381 0.00 0.00 0.00 1.82
397 398 2.775960 CCCCTCCGGTCCTTTTTACTAT 59.224 50.000 0.00 0.00 0.00 2.12
398 399 3.433173 CCCCTCCGGTCCTTTTTACTATG 60.433 52.174 0.00 0.00 0.00 2.23
399 400 3.203716 CCTCCGGTCCTTTTTACTATGC 58.796 50.000 0.00 0.00 0.00 3.14
400 401 3.370103 CCTCCGGTCCTTTTTACTATGCA 60.370 47.826 0.00 0.00 0.00 3.96
401 402 4.451900 CTCCGGTCCTTTTTACTATGCAT 58.548 43.478 3.79 3.79 0.00 3.96
402 403 5.454187 CCTCCGGTCCTTTTTACTATGCATA 60.454 44.000 6.20 6.20 0.00 3.14
403 404 6.182507 TCCGGTCCTTTTTACTATGCATAT 57.817 37.500 6.92 0.64 0.00 1.78
404 405 7.305813 TCCGGTCCTTTTTACTATGCATATA 57.694 36.000 6.92 0.00 0.00 0.86
405 406 7.737869 TCCGGTCCTTTTTACTATGCATATAA 58.262 34.615 6.92 5.81 0.00 0.98
406 407 8.212312 TCCGGTCCTTTTTACTATGCATATAAA 58.788 33.333 6.92 10.99 0.00 1.40
407 408 8.842280 CCGGTCCTTTTTACTATGCATATAAAA 58.158 33.333 19.29 19.29 0.00 1.52
436 437 9.832445 TGTCTAAAGTCAAACTTCATAAAGTCT 57.168 29.630 0.00 0.00 45.07 3.24
441 442 8.974060 AAGTCAAACTTCATAAAGTCTAACCA 57.026 30.769 0.00 0.00 45.07 3.67
442 443 9.574516 AAGTCAAACTTCATAAAGTCTAACCAT 57.425 29.630 0.00 0.00 45.07 3.55
481 482 9.632638 AAATATCAACATCTACCATGCTAAAGT 57.367 29.630 0.00 0.00 0.00 2.66
482 483 9.632638 AATATCAACATCTACCATGCTAAAGTT 57.367 29.630 0.00 0.00 0.00 2.66
486 487 9.542462 TCAACATCTACCATGCTAAAGTTATAC 57.458 33.333 0.00 0.00 0.00 1.47
487 488 9.325198 CAACATCTACCATGCTAAAGTTATACA 57.675 33.333 0.00 0.00 0.00 2.29
488 489 9.899661 AACATCTACCATGCTAAAGTTATACAA 57.100 29.630 0.00 0.00 0.00 2.41
587 588 9.607988 AAAGTTGGTTAAATTTTAGAAGGGTTG 57.392 29.630 0.00 0.00 30.64 3.77
588 589 8.541899 AGTTGGTTAAATTTTAGAAGGGTTGA 57.458 30.769 0.00 0.00 0.00 3.18
589 590 9.154632 AGTTGGTTAAATTTTAGAAGGGTTGAT 57.845 29.630 0.00 0.00 0.00 2.57
590 591 9.772973 GTTGGTTAAATTTTAGAAGGGTTGATT 57.227 29.630 0.00 0.00 0.00 2.57
602 603 9.807921 TTAGAAGGGTTGATTTTAGACAAATCT 57.192 29.630 8.40 0.00 37.50 2.40
603 604 8.712228 AGAAGGGTTGATTTTAGACAAATCTT 57.288 30.769 8.40 0.00 37.50 2.40
604 605 9.147732 AGAAGGGTTGATTTTAGACAAATCTTT 57.852 29.630 8.40 0.00 37.50 2.52
605 606 9.764363 GAAGGGTTGATTTTAGACAAATCTTTT 57.236 29.630 8.40 0.00 37.50 2.27
608 609 9.124807 GGGTTGATTTTAGACAAATCTTTTACG 57.875 33.333 8.40 0.00 37.50 3.18
609 610 8.635983 GGTTGATTTTAGACAAATCTTTTACGC 58.364 33.333 8.40 0.00 37.50 4.42
610 611 8.355806 GTTGATTTTAGACAAATCTTTTACGCG 58.644 33.333 3.53 3.53 37.50 6.01
611 612 7.798801 TGATTTTAGACAAATCTTTTACGCGA 58.201 30.769 15.93 0.00 37.50 5.87
612 613 8.283992 TGATTTTAGACAAATCTTTTACGCGAA 58.716 29.630 15.93 0.00 37.50 4.70
613 614 7.825627 TTTTAGACAAATCTTTTACGCGAAC 57.174 32.000 15.93 0.00 36.29 3.95
614 615 6.774354 TTAGACAAATCTTTTACGCGAACT 57.226 33.333 15.93 0.00 36.29 3.01
615 616 7.872163 TTAGACAAATCTTTTACGCGAACTA 57.128 32.000 15.93 0.00 36.29 2.24
616 617 6.774354 AGACAAATCTTTTACGCGAACTAA 57.226 33.333 15.93 0.00 0.00 2.24
617 618 7.181143 AGACAAATCTTTTACGCGAACTAAA 57.819 32.000 15.93 4.45 0.00 1.85
618 619 7.067728 AGACAAATCTTTTACGCGAACTAAAC 58.932 34.615 15.93 0.00 0.00 2.01
619 620 6.951643 ACAAATCTTTTACGCGAACTAAACT 58.048 32.000 15.93 0.00 0.00 2.66
620 621 8.075593 ACAAATCTTTTACGCGAACTAAACTA 57.924 30.769 15.93 0.00 0.00 2.24
621 622 8.550376 ACAAATCTTTTACGCGAACTAAACTAA 58.450 29.630 15.93 0.00 0.00 2.24
622 623 9.372541 CAAATCTTTTACGCGAACTAAACTAAA 57.627 29.630 15.93 1.05 0.00 1.85
623 624 9.934190 AAATCTTTTACGCGAACTAAACTAAAA 57.066 25.926 15.93 9.83 0.00 1.52
624 625 9.934190 AATCTTTTACGCGAACTAAACTAAAAA 57.066 25.926 15.93 3.01 0.00 1.94
625 626 8.976715 TCTTTTACGCGAACTAAACTAAAAAG 57.023 30.769 15.93 11.56 34.38 2.27
626 627 8.816144 TCTTTTACGCGAACTAAACTAAAAAGA 58.184 29.630 15.93 13.39 37.81 2.52
627 628 9.424659 CTTTTACGCGAACTAAACTAAAAAGAA 57.575 29.630 15.93 0.00 34.78 2.52
628 629 9.766277 TTTTACGCGAACTAAACTAAAAAGAAA 57.234 25.926 15.93 0.00 0.00 2.52
629 630 8.976715 TTACGCGAACTAAACTAAAAAGAAAG 57.023 30.769 15.93 0.00 0.00 2.62
630 631 6.424683 ACGCGAACTAAACTAAAAAGAAAGG 58.575 36.000 15.93 0.00 0.00 3.11
631 632 6.258507 ACGCGAACTAAACTAAAAAGAAAGGA 59.741 34.615 15.93 0.00 0.00 3.36
632 633 6.572621 CGCGAACTAAACTAAAAAGAAAGGAC 59.427 38.462 0.00 0.00 0.00 3.85
633 634 6.854892 GCGAACTAAACTAAAAAGAAAGGACC 59.145 38.462 0.00 0.00 0.00 4.46
634 635 7.067728 CGAACTAAACTAAAAAGAAAGGACCG 58.932 38.462 0.00 0.00 0.00 4.79
635 636 6.872628 ACTAAACTAAAAAGAAAGGACCGG 57.127 37.500 0.00 0.00 0.00 5.28
636 637 6.594744 ACTAAACTAAAAAGAAAGGACCGGA 58.405 36.000 9.46 0.00 0.00 5.14
637 638 7.229308 ACTAAACTAAAAAGAAAGGACCGGAT 58.771 34.615 9.46 0.00 0.00 4.18
638 639 5.959618 AACTAAAAAGAAAGGACCGGATG 57.040 39.130 9.46 0.00 0.00 3.51
639 640 4.332828 ACTAAAAAGAAAGGACCGGATGG 58.667 43.478 9.46 0.00 42.84 3.51
640 641 3.518992 AAAAAGAAAGGACCGGATGGA 57.481 42.857 9.46 0.00 39.21 3.41
641 642 2.789409 AAAGAAAGGACCGGATGGAG 57.211 50.000 9.46 0.00 39.21 3.86
642 643 1.657804 AAGAAAGGACCGGATGGAGT 58.342 50.000 9.46 0.00 39.21 3.85
643 644 0.905357 AGAAAGGACCGGATGGAGTG 59.095 55.000 9.46 0.00 39.21 3.51
668 669 3.710722 CACCTGCCTCCCTCGCTT 61.711 66.667 0.00 0.00 0.00 4.68
688 689 2.213310 TCCACCCTCAGATCTCTCTCT 58.787 52.381 0.00 0.00 0.00 3.10
689 690 2.174639 TCCACCCTCAGATCTCTCTCTC 59.825 54.545 0.00 0.00 0.00 3.20
690 691 2.175499 CCACCCTCAGATCTCTCTCTCT 59.825 54.545 0.00 0.00 0.00 3.10
691 692 3.480470 CACCCTCAGATCTCTCTCTCTC 58.520 54.545 0.00 0.00 0.00 3.20
692 693 3.137176 CACCCTCAGATCTCTCTCTCTCT 59.863 52.174 0.00 0.00 0.00 3.10
693 694 3.392616 ACCCTCAGATCTCTCTCTCTCTC 59.607 52.174 0.00 0.00 0.00 3.20
694 695 3.649981 CCCTCAGATCTCTCTCTCTCTCT 59.350 52.174 0.00 0.00 0.00 3.10
707 708 7.338710 TCTCTCTCTCTCTCCTTTCTCTAAAG 58.661 42.308 0.00 0.00 41.57 1.85
798 805 0.833409 TTCTGCCTCTCTCAGTGCCA 60.833 55.000 0.00 0.00 33.48 4.92
908 917 1.620323 CGGCACTATCCATGGATGAGA 59.380 52.381 33.41 15.65 36.17 3.27
1172 1181 0.030369 CCGCCCGTCATAGTGAGTAC 59.970 60.000 0.00 0.00 0.00 2.73
1189 1199 1.732259 GTACCTCAAACATGCTCCGTG 59.268 52.381 0.00 0.00 0.00 4.94
1770 1780 1.604378 GTGGGAGGACACCATGGAG 59.396 63.158 21.47 14.24 40.70 3.86
1781 1791 5.653769 AGGACACCATGGAGTATGAAAATTG 59.346 40.000 21.47 3.69 39.21 2.32
1820 1830 8.051901 AGTCAATTTTTAGTAGTATGTTGGCC 57.948 34.615 0.00 0.00 0.00 5.36
1821 1831 7.122204 AGTCAATTTTTAGTAGTATGTTGGCCC 59.878 37.037 0.00 0.00 0.00 5.80
1822 1832 6.378848 TCAATTTTTAGTAGTATGTTGGCCCC 59.621 38.462 0.00 0.00 0.00 5.80
1823 1833 3.937778 TTTAGTAGTATGTTGGCCCCC 57.062 47.619 0.00 0.00 0.00 5.40
1824 1834 2.881266 TAGTAGTATGTTGGCCCCCT 57.119 50.000 0.00 0.00 0.00 4.79
1825 1835 1.508256 AGTAGTATGTTGGCCCCCTC 58.492 55.000 0.00 0.00 0.00 4.30
1826 1836 0.472898 GTAGTATGTTGGCCCCCTCC 59.527 60.000 0.00 0.00 0.00 4.30
1827 1837 1.052124 TAGTATGTTGGCCCCCTCCG 61.052 60.000 0.00 0.00 0.00 4.63
1829 1839 2.372074 TATGTTGGCCCCCTCCGTC 61.372 63.158 0.00 0.00 0.00 4.79
1835 1845 4.024545 GCCCCCTCCGTCCGAAAA 62.025 66.667 0.00 0.00 0.00 2.29
1836 1846 2.995547 CCCCCTCCGTCCGAAAAT 59.004 61.111 0.00 0.00 0.00 1.82
1837 1847 1.974973 GCCCCCTCCGTCCGAAAATA 61.975 60.000 0.00 0.00 0.00 1.40
1838 1848 0.179065 CCCCCTCCGTCCGAAAATAC 60.179 60.000 0.00 0.00 0.00 1.89
1839 1849 0.828677 CCCCTCCGTCCGAAAATACT 59.171 55.000 0.00 0.00 0.00 2.12
1840 1850 1.208776 CCCCTCCGTCCGAAAATACTT 59.791 52.381 0.00 0.00 0.00 2.24
1841 1851 2.277084 CCCTCCGTCCGAAAATACTTG 58.723 52.381 0.00 0.00 0.00 3.16
1842 1852 1.664151 CCTCCGTCCGAAAATACTTGC 59.336 52.381 0.00 0.00 0.00 4.01
1843 1853 1.664151 CTCCGTCCGAAAATACTTGCC 59.336 52.381 0.00 0.00 0.00 4.52
1844 1854 1.002201 TCCGTCCGAAAATACTTGCCA 59.998 47.619 0.00 0.00 0.00 4.92
1845 1855 2.014128 CCGTCCGAAAATACTTGCCAT 58.986 47.619 0.00 0.00 0.00 4.40
1846 1856 2.031683 CCGTCCGAAAATACTTGCCATC 59.968 50.000 0.00 0.00 0.00 3.51
1847 1857 2.675844 CGTCCGAAAATACTTGCCATCA 59.324 45.455 0.00 0.00 0.00 3.07
1848 1858 3.126171 CGTCCGAAAATACTTGCCATCAA 59.874 43.478 0.00 0.00 0.00 2.57
1850 1860 5.465935 GTCCGAAAATACTTGCCATCAAAA 58.534 37.500 0.00 0.00 0.00 2.44
1851 1861 6.099341 GTCCGAAAATACTTGCCATCAAAAT 58.901 36.000 0.00 0.00 0.00 1.82
1852 1862 6.034898 GTCCGAAAATACTTGCCATCAAAATG 59.965 38.462 0.00 0.00 0.00 2.32
1909 1919 9.132923 ACGTCTAGATACATCTTCTTTTATCCA 57.867 33.333 0.00 0.00 38.32 3.41
1922 1932 9.912634 TCTTCTTTTATCCATTTTGATGACAAC 57.087 29.630 0.00 0.00 35.63 3.32
1923 1933 9.918630 CTTCTTTTATCCATTTTGATGACAACT 57.081 29.630 0.00 0.00 35.63 3.16
1930 1940 6.851609 TCCATTTTGATGACAACTATTTCCG 58.148 36.000 0.00 0.00 35.63 4.30
1931 1941 6.035843 CCATTTTGATGACAACTATTTCCGG 58.964 40.000 0.00 0.00 35.63 5.14
1932 1942 6.127758 CCATTTTGATGACAACTATTTCCGGA 60.128 38.462 0.00 0.00 35.63 5.14
1933 1943 5.873179 TTTGATGACAACTATTTCCGGAC 57.127 39.130 1.83 0.00 35.63 4.79
1934 1944 3.517602 TGATGACAACTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1935 1945 2.373540 TGACAACTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1936 1946 1.894466 TGACAACTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1937 1947 2.094390 TGACAACTATTTCCGGACGGAG 60.094 50.000 13.64 3.57 46.06 4.63
1938 1948 1.206371 ACAACTATTTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30
1939 1949 0.828677 AACTATTTCCGGACGGAGGG 59.171 55.000 13.64 7.89 46.06 4.30
1940 1950 0.032813 ACTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1941 1951 0.674534 CTATTTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
1942 1952 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1943 1953 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1944 1954 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1945 1955 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
1990 2001 1.937899 GCATTGCCTGCCATGATTTTC 59.062 47.619 7.33 0.00 45.66 2.29
2110 2129 7.278868 GTCACATTAGTTTCTCTTGGTATCCAG 59.721 40.741 0.00 0.00 33.81 3.86
2289 2308 9.653287 TTGATGTATAGTTCTTTCTGTGGTAAG 57.347 33.333 0.00 0.00 0.00 2.34
2415 3599 3.317150 TGATGACAGCTGTTCAGTAACG 58.683 45.455 22.65 0.00 38.53 3.18
2428 3612 9.099820 GCTGTTCAGTAACGTTTAATTTTAGTC 57.900 33.333 5.91 0.00 38.53 2.59
2661 3845 7.732222 ACTGAAGAAGTTTCTCCTGAGATAT 57.268 36.000 0.00 0.00 34.57 1.63
2705 3889 2.494059 AGCAGTACATCTTTTGCACGT 58.506 42.857 5.46 0.00 38.97 4.49
2790 3974 1.250328 TCAGCTTGCATGGGAACTTG 58.750 50.000 1.34 0.00 38.46 3.16
2861 4045 0.752054 GGAGAGCCATCACTCAGGAG 59.248 60.000 0.00 0.00 39.26 3.69
2893 4077 3.244078 CCTATAATAACTCGGCTGGCACA 60.244 47.826 1.08 0.00 0.00 4.57
3170 4354 9.926751 GACAATAATCTGTATCATTTCTGTGTG 57.073 33.333 0.00 0.00 0.00 3.82
3323 4507 5.393461 CCTGATAAATGACTTCAAAGGGTGC 60.393 44.000 0.00 0.00 0.00 5.01
3437 4621 1.070134 TCCTCTGGTGGTTTGAAGACG 59.930 52.381 0.00 0.00 0.00 4.18
3710 4894 5.587443 CAGCTCAAAGATTGATCCACATACA 59.413 40.000 0.00 0.00 39.30 2.29
3841 5025 1.227853 GAACGGGCACACTTCCAGT 60.228 57.895 0.00 0.00 33.46 4.00
4087 5271 2.768253 CACTAGGGAGTGTGCAATCA 57.232 50.000 2.12 0.00 46.88 2.57
4093 5277 1.956477 GGGAGTGTGCAATCACTGTTT 59.044 47.619 14.16 0.00 46.81 2.83
4131 5315 1.070134 ACGGCACTGAAGCTAGAAACA 59.930 47.619 0.00 0.00 34.17 2.83
4381 5592 5.220931 GGAGATACAGTTGTTGGATTGATGC 60.221 44.000 0.00 0.00 27.37 3.91
4442 5653 1.642952 GCTGTGCAGAGCTTACTGGC 61.643 60.000 27.35 0.00 38.22 4.85
4459 5670 2.554032 CTGGCGTTCATTCTTTTCAGGT 59.446 45.455 0.00 0.00 0.00 4.00
4521 5732 9.810545 TCCTTTTCCTTTTTGTATAAACAGTTG 57.189 29.630 0.00 0.00 36.83 3.16
4544 5755 6.978338 TGAGTATTCTTCACAGTACGAACTT 58.022 36.000 0.00 0.00 31.97 2.66
4615 5826 6.533730 AGTTGAGTTTCTCATGTTCCATACA 58.466 36.000 0.24 0.00 40.39 2.29
4674 5886 8.314751 TGTTTGATTGGTTTTTAGTTCCAGAAA 58.685 29.630 0.00 0.00 32.63 2.52
4722 5934 6.451393 TGCCTTTACAATTTGTGTGGATTAC 58.549 36.000 12.30 0.75 41.89 1.89
4749 5961 4.082026 GTCAATTTTTGTAGCAGATGCCCT 60.082 41.667 0.14 0.00 43.38 5.19
4760 5972 1.561542 CAGATGCCCTAAGTCCAAGGT 59.438 52.381 0.00 0.00 31.70 3.50
4859 6857 5.105797 TGGTGCTAGTAATGCAAAGATTTGG 60.106 40.000 7.38 0.00 42.41 3.28
4868 6866 4.612932 TGCAAAGATTTGGTTTTTGTGC 57.387 36.364 7.38 0.00 38.57 4.57
4892 6890 4.528920 ACTTTGGCTGTGTTGTAACCTTA 58.471 39.130 0.00 0.00 0.00 2.69
4896 6894 3.325425 TGGCTGTGTTGTAACCTTAGCTA 59.675 43.478 11.81 0.00 32.39 3.32
4906 6904 5.594926 TGTAACCTTAGCTATAACCTTCGC 58.405 41.667 0.00 0.00 0.00 4.70
4929 6927 4.572389 CAGTGATGTGAACCTTGGCTATAC 59.428 45.833 0.00 0.00 0.00 1.47
4948 8064 2.561569 ACTGTGACCACTAAGTGTTGC 58.438 47.619 1.62 0.00 0.00 4.17
4949 8065 1.873591 CTGTGACCACTAAGTGTTGCC 59.126 52.381 1.62 0.00 0.00 4.52
5015 8132 6.814506 AGTCTCATGTTGAAATTCTCCTTG 57.185 37.500 0.00 0.00 0.00 3.61
5024 8141 6.811170 TGTTGAAATTCTCCTTGTGTTTGTTC 59.189 34.615 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.410067 AGTCCCATTAAAAATCATGTTGCG 58.590 37.500 0.00 0.00 0.00 4.85
1 2 7.361116 CCAAAGTCCCATTAAAAATCATGTTGC 60.361 37.037 0.00 0.00 0.00 4.17
2 3 7.119553 CCCAAAGTCCCATTAAAAATCATGTTG 59.880 37.037 0.00 0.00 0.00 3.33
3 4 7.167535 CCCAAAGTCCCATTAAAAATCATGTT 58.832 34.615 0.00 0.00 0.00 2.71
4 5 6.710278 CCCAAAGTCCCATTAAAAATCATGT 58.290 36.000 0.00 0.00 0.00 3.21
5 6 5.585844 GCCCAAAGTCCCATTAAAAATCATG 59.414 40.000 0.00 0.00 0.00 3.07
6 7 5.488561 AGCCCAAAGTCCCATTAAAAATCAT 59.511 36.000 0.00 0.00 0.00 2.45
7 8 4.843516 AGCCCAAAGTCCCATTAAAAATCA 59.156 37.500 0.00 0.00 0.00 2.57
8 9 5.420725 AGCCCAAAGTCCCATTAAAAATC 57.579 39.130 0.00 0.00 0.00 2.17
9 10 6.671779 TGATAGCCCAAAGTCCCATTAAAAAT 59.328 34.615 0.00 0.00 0.00 1.82
10 11 6.019748 TGATAGCCCAAAGTCCCATTAAAAA 58.980 36.000 0.00 0.00 0.00 1.94
11 12 5.584913 TGATAGCCCAAAGTCCCATTAAAA 58.415 37.500 0.00 0.00 0.00 1.52
12 13 5.199982 TGATAGCCCAAAGTCCCATTAAA 57.800 39.130 0.00 0.00 0.00 1.52
13 14 4.871871 TGATAGCCCAAAGTCCCATTAA 57.128 40.909 0.00 0.00 0.00 1.40
14 15 4.871871 TTGATAGCCCAAAGTCCCATTA 57.128 40.909 0.00 0.00 0.00 1.90
15 16 3.756082 TTGATAGCCCAAAGTCCCATT 57.244 42.857 0.00 0.00 0.00 3.16
16 17 3.756082 TTTGATAGCCCAAAGTCCCAT 57.244 42.857 0.00 0.00 32.77 4.00
17 18 3.756082 ATTTGATAGCCCAAAGTCCCA 57.244 42.857 0.00 0.00 39.13 4.37
18 19 6.538945 TTAAATTTGATAGCCCAAAGTCCC 57.461 37.500 0.00 0.00 39.13 4.46
19 20 8.040727 ACAATTAAATTTGATAGCCCAAAGTCC 58.959 33.333 0.00 0.00 39.13 3.85
24 25 9.814899 CACATACAATTAAATTTGATAGCCCAA 57.185 29.630 0.00 0.00 0.00 4.12
25 26 8.976353 ACACATACAATTAAATTTGATAGCCCA 58.024 29.630 0.00 0.00 0.00 5.36
37 38 9.719355 ACAGTGAGATGTACACATACAATTAAA 57.281 29.630 0.00 0.00 44.47 1.52
40 41 8.749354 TCTACAGTGAGATGTACACATACAATT 58.251 33.333 0.00 0.00 44.47 2.32
41 42 8.293699 TCTACAGTGAGATGTACACATACAAT 57.706 34.615 0.00 0.00 44.47 2.71
42 43 7.696992 TCTACAGTGAGATGTACACATACAA 57.303 36.000 0.00 0.00 44.47 2.41
43 44 7.881775 ATCTACAGTGAGATGTACACATACA 57.118 36.000 0.00 0.00 45.37 2.29
44 45 9.666626 GTTATCTACAGTGAGATGTACACATAC 57.333 37.037 0.00 0.00 40.25 2.39
45 46 9.403583 TGTTATCTACAGTGAGATGTACACATA 57.596 33.333 0.00 0.00 40.25 2.29
46 47 8.293699 TGTTATCTACAGTGAGATGTACACAT 57.706 34.615 0.00 0.00 40.25 3.21
47 48 7.696992 TGTTATCTACAGTGAGATGTACACA 57.303 36.000 0.00 0.00 40.25 3.72
48 49 7.221067 GCTTGTTATCTACAGTGAGATGTACAC 59.779 40.741 0.00 0.00 38.19 2.90
49 50 7.258441 GCTTGTTATCTACAGTGAGATGTACA 58.742 38.462 0.00 0.00 38.19 2.90
50 51 6.697892 GGCTTGTTATCTACAGTGAGATGTAC 59.302 42.308 12.59 11.03 38.19 2.90
51 52 6.379988 TGGCTTGTTATCTACAGTGAGATGTA 59.620 38.462 12.59 0.00 38.19 2.29
52 53 5.187772 TGGCTTGTTATCTACAGTGAGATGT 59.812 40.000 12.59 0.00 38.19 3.06
53 54 5.664457 TGGCTTGTTATCTACAGTGAGATG 58.336 41.667 12.59 1.36 38.19 2.90
54 55 5.939764 TGGCTTGTTATCTACAGTGAGAT 57.060 39.130 0.00 3.82 38.19 2.75
55 56 5.450550 CGATGGCTTGTTATCTACAGTGAGA 60.451 44.000 0.00 0.00 38.19 3.27
56 57 4.742167 CGATGGCTTGTTATCTACAGTGAG 59.258 45.833 0.00 0.00 38.19 3.51
57 58 4.159693 ACGATGGCTTGTTATCTACAGTGA 59.840 41.667 0.00 0.00 38.19 3.41
58 59 4.433615 ACGATGGCTTGTTATCTACAGTG 58.566 43.478 0.00 0.00 38.19 3.66
59 60 4.737855 ACGATGGCTTGTTATCTACAGT 57.262 40.909 0.00 0.00 38.19 3.55
60 61 5.352284 AGAACGATGGCTTGTTATCTACAG 58.648 41.667 0.00 0.00 38.19 2.74
61 62 5.339008 AGAACGATGGCTTGTTATCTACA 57.661 39.130 0.00 0.00 34.12 2.74
62 63 6.037423 CAAGAACGATGGCTTGTTATCTAC 57.963 41.667 0.00 0.00 37.35 2.59
70 71 9.781834 TTAATAATAAACAAGAACGATGGCTTG 57.218 29.630 0.00 0.00 45.27 4.01
73 74 9.233232 CCTTTAATAATAAACAAGAACGATGGC 57.767 33.333 0.00 0.00 0.00 4.40
74 75 9.730420 CCCTTTAATAATAAACAAGAACGATGG 57.270 33.333 0.00 0.00 0.00 3.51
75 76 9.233232 GCCCTTTAATAATAAACAAGAACGATG 57.767 33.333 0.00 0.00 0.00 3.84
76 77 8.126700 CGCCCTTTAATAATAAACAAGAACGAT 58.873 33.333 0.00 0.00 0.00 3.73
77 78 7.119553 ACGCCCTTTAATAATAAACAAGAACGA 59.880 33.333 0.00 0.00 0.00 3.85
78 79 7.245604 ACGCCCTTTAATAATAAACAAGAACG 58.754 34.615 0.00 0.00 0.00 3.95
79 80 8.975410 AACGCCCTTTAATAATAAACAAGAAC 57.025 30.769 0.00 0.00 0.00 3.01
96 97 9.713713 ACATAAAATAACAAATTTAACGCCCTT 57.286 25.926 0.00 0.00 0.00 3.95
97 98 9.145865 CACATAAAATAACAAATTTAACGCCCT 57.854 29.630 0.00 0.00 0.00 5.19
98 99 7.900864 GCACATAAAATAACAAATTTAACGCCC 59.099 33.333 0.00 0.00 0.00 6.13
99 100 8.652463 AGCACATAAAATAACAAATTTAACGCC 58.348 29.630 0.00 0.00 0.00 5.68
104 105 8.940952 GGGCAAGCACATAAAATAACAAATTTA 58.059 29.630 0.00 0.00 0.00 1.40
105 106 7.446625 TGGGCAAGCACATAAAATAACAAATTT 59.553 29.630 0.00 0.00 0.00 1.82
106 107 6.939163 TGGGCAAGCACATAAAATAACAAATT 59.061 30.769 0.00 0.00 0.00 1.82
107 108 6.371271 GTGGGCAAGCACATAAAATAACAAAT 59.629 34.615 0.00 0.00 0.00 2.32
108 109 5.698545 GTGGGCAAGCACATAAAATAACAAA 59.301 36.000 0.00 0.00 0.00 2.83
109 110 5.221521 TGTGGGCAAGCACATAAAATAACAA 60.222 36.000 0.00 0.00 0.00 2.83
110 111 4.281941 TGTGGGCAAGCACATAAAATAACA 59.718 37.500 0.00 0.00 0.00 2.41
111 112 4.815269 TGTGGGCAAGCACATAAAATAAC 58.185 39.130 0.00 0.00 0.00 1.89
112 113 5.011533 AGTTGTGGGCAAGCACATAAAATAA 59.988 36.000 8.07 0.00 32.48 1.40
113 114 4.526262 AGTTGTGGGCAAGCACATAAAATA 59.474 37.500 8.07 0.00 32.48 1.40
114 115 3.324556 AGTTGTGGGCAAGCACATAAAAT 59.675 39.130 8.07 0.00 32.48 1.82
115 116 2.697751 AGTTGTGGGCAAGCACATAAAA 59.302 40.909 8.07 0.00 32.48 1.52
116 117 2.035704 CAGTTGTGGGCAAGCACATAAA 59.964 45.455 8.07 0.00 32.48 1.40
117 118 1.612950 CAGTTGTGGGCAAGCACATAA 59.387 47.619 0.00 0.41 34.94 1.90
118 119 1.202867 TCAGTTGTGGGCAAGCACATA 60.203 47.619 0.00 0.00 34.94 2.29
119 120 0.467844 TCAGTTGTGGGCAAGCACAT 60.468 50.000 0.00 0.00 34.94 3.21
120 121 0.682532 TTCAGTTGTGGGCAAGCACA 60.683 50.000 0.00 0.00 34.94 4.57
121 122 0.249031 GTTCAGTTGTGGGCAAGCAC 60.249 55.000 0.00 0.00 34.94 4.40
122 123 1.391157 GGTTCAGTTGTGGGCAAGCA 61.391 55.000 0.00 0.00 34.94 3.91
123 124 1.363807 GGTTCAGTTGTGGGCAAGC 59.636 57.895 0.00 0.00 34.94 4.01
124 125 1.110442 TTGGTTCAGTTGTGGGCAAG 58.890 50.000 0.00 0.00 34.94 4.01
125 126 0.820871 GTTGGTTCAGTTGTGGGCAA 59.179 50.000 0.00 0.00 0.00 4.52
126 127 0.033601 AGTTGGTTCAGTTGTGGGCA 60.034 50.000 0.00 0.00 0.00 5.36
127 128 1.975660 TAGTTGGTTCAGTTGTGGGC 58.024 50.000 0.00 0.00 0.00 5.36
128 129 3.067601 GGTTTAGTTGGTTCAGTTGTGGG 59.932 47.826 0.00 0.00 0.00 4.61
129 130 3.697045 TGGTTTAGTTGGTTCAGTTGTGG 59.303 43.478 0.00 0.00 0.00 4.17
130 131 4.974368 TGGTTTAGTTGGTTCAGTTGTG 57.026 40.909 0.00 0.00 0.00 3.33
131 132 4.340950 CCATGGTTTAGTTGGTTCAGTTGT 59.659 41.667 2.57 0.00 0.00 3.32
132 133 4.582656 TCCATGGTTTAGTTGGTTCAGTTG 59.417 41.667 12.58 0.00 0.00 3.16
133 134 4.798882 TCCATGGTTTAGTTGGTTCAGTT 58.201 39.130 12.58 0.00 0.00 3.16
134 135 4.447138 TCCATGGTTTAGTTGGTTCAGT 57.553 40.909 12.58 0.00 0.00 3.41
135 136 5.982890 AATCCATGGTTTAGTTGGTTCAG 57.017 39.130 12.58 0.00 0.00 3.02
136 137 6.553100 AGAAAATCCATGGTTTAGTTGGTTCA 59.447 34.615 12.58 0.00 0.00 3.18
137 138 6.993079 AGAAAATCCATGGTTTAGTTGGTTC 58.007 36.000 12.58 9.09 0.00 3.62
138 139 6.994421 AGAAAATCCATGGTTTAGTTGGTT 57.006 33.333 12.58 0.00 0.00 3.67
139 140 6.994421 AAGAAAATCCATGGTTTAGTTGGT 57.006 33.333 12.58 0.00 0.00 3.67
140 141 7.930865 TGAAAAGAAAATCCATGGTTTAGTTGG 59.069 33.333 12.58 0.00 0.00 3.77
141 142 8.885494 TGAAAAGAAAATCCATGGTTTAGTTG 57.115 30.769 12.58 0.00 0.00 3.16
143 144 9.492973 CATTGAAAAGAAAATCCATGGTTTAGT 57.507 29.630 12.58 1.48 0.00 2.24
144 145 9.492973 ACATTGAAAAGAAAATCCATGGTTTAG 57.507 29.630 12.58 0.00 0.00 1.85
145 146 9.270640 CACATTGAAAAGAAAATCCATGGTTTA 57.729 29.630 12.58 0.00 0.00 2.01
146 147 7.992033 TCACATTGAAAAGAAAATCCATGGTTT 59.008 29.630 12.58 6.97 0.00 3.27
147 148 7.507829 TCACATTGAAAAGAAAATCCATGGTT 58.492 30.769 12.58 0.00 0.00 3.67
148 149 7.065120 TCACATTGAAAAGAAAATCCATGGT 57.935 32.000 12.58 0.00 0.00 3.55
149 150 7.441760 TGTTCACATTGAAAAGAAAATCCATGG 59.558 33.333 4.97 4.97 38.22 3.66
150 151 8.367943 TGTTCACATTGAAAAGAAAATCCATG 57.632 30.769 0.00 0.00 38.22 3.66
151 152 8.995220 CATGTTCACATTGAAAAGAAAATCCAT 58.005 29.630 0.00 0.00 38.22 3.41
152 153 8.202811 TCATGTTCACATTGAAAAGAAAATCCA 58.797 29.630 0.00 0.00 38.22 3.41
153 154 8.592105 TCATGTTCACATTGAAAAGAAAATCC 57.408 30.769 0.00 0.00 38.22 3.01
159 160 9.195411 GCTTAAATCATGTTCACATTGAAAAGA 57.805 29.630 0.00 0.00 38.22 2.52
160 161 8.157813 CGCTTAAATCATGTTCACATTGAAAAG 58.842 33.333 0.00 1.13 38.22 2.27
161 162 7.651304 ACGCTTAAATCATGTTCACATTGAAAA 59.349 29.630 0.00 0.00 38.22 2.29
162 163 7.114670 CACGCTTAAATCATGTTCACATTGAAA 59.885 33.333 0.00 0.00 38.22 2.69
163 164 6.581919 CACGCTTAAATCATGTTCACATTGAA 59.418 34.615 0.00 0.00 33.61 2.69
164 165 6.085573 CACGCTTAAATCATGTTCACATTGA 58.914 36.000 0.00 0.00 33.61 2.57
165 166 5.858049 ACACGCTTAAATCATGTTCACATTG 59.142 36.000 0.00 0.00 33.61 2.82
166 167 6.012658 ACACGCTTAAATCATGTTCACATT 57.987 33.333 0.00 0.00 33.61 2.71
167 168 5.412594 AGACACGCTTAAATCATGTTCACAT 59.587 36.000 0.00 0.00 36.96 3.21
168 169 4.754618 AGACACGCTTAAATCATGTTCACA 59.245 37.500 0.00 0.00 0.00 3.58
169 170 5.120830 AGAGACACGCTTAAATCATGTTCAC 59.879 40.000 0.00 0.00 0.00 3.18
170 171 5.120674 CAGAGACACGCTTAAATCATGTTCA 59.879 40.000 0.00 0.00 0.00 3.18
171 172 5.554636 CAGAGACACGCTTAAATCATGTTC 58.445 41.667 0.00 0.00 0.00 3.18
172 173 4.142816 GCAGAGACACGCTTAAATCATGTT 60.143 41.667 0.00 0.00 0.00 2.71
173 174 3.372206 GCAGAGACACGCTTAAATCATGT 59.628 43.478 0.00 0.00 0.00 3.21
174 175 3.542875 CGCAGAGACACGCTTAAATCATG 60.543 47.826 0.00 0.00 0.00 3.07
175 176 2.604914 CGCAGAGACACGCTTAAATCAT 59.395 45.455 0.00 0.00 0.00 2.45
176 177 1.992667 CGCAGAGACACGCTTAAATCA 59.007 47.619 0.00 0.00 0.00 2.57
177 178 2.703190 CGCAGAGACACGCTTAAATC 57.297 50.000 0.00 0.00 0.00 2.17
185 186 1.133253 CAAATGGCGCAGAGACACG 59.867 57.895 10.83 0.00 43.31 4.49
186 187 1.503542 CCAAATGGCGCAGAGACAC 59.496 57.895 10.83 0.00 43.31 3.67
187 188 3.985877 CCAAATGGCGCAGAGACA 58.014 55.556 10.83 0.00 45.56 3.41
197 198 1.226660 GATCCGTTGCGCCAAATGG 60.227 57.895 4.18 8.82 37.53 3.16
198 199 1.226660 GGATCCGTTGCGCCAAATG 60.227 57.895 4.18 0.00 0.00 2.32
199 200 1.677300 TGGATCCGTTGCGCCAAAT 60.677 52.632 4.18 0.00 0.00 2.32
200 201 2.281831 TGGATCCGTTGCGCCAAA 60.282 55.556 4.18 0.00 0.00 3.28
201 202 2.173758 TAGTGGATCCGTTGCGCCAA 62.174 55.000 4.18 0.00 31.18 4.52
202 203 2.572095 CTAGTGGATCCGTTGCGCCA 62.572 60.000 4.18 0.00 0.00 5.69
203 204 1.883084 CTAGTGGATCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
204 205 0.101759 TACTAGTGGATCCGTTGCGC 59.898 55.000 7.39 0.00 0.00 6.09
205 206 2.795175 ATACTAGTGGATCCGTTGCG 57.205 50.000 7.39 0.00 0.00 4.85
217 218 8.954350 CGCCCCGCTTTATATATATATACTAGT 58.046 37.037 11.30 0.00 0.00 2.57
218 219 9.170734 TCGCCCCGCTTTATATATATATACTAG 57.829 37.037 11.30 12.10 0.00 2.57
219 220 9.519191 TTCGCCCCGCTTTATATATATATACTA 57.481 33.333 11.30 3.61 0.00 1.82
220 221 8.413309 TTCGCCCCGCTTTATATATATATACT 57.587 34.615 11.30 0.00 0.00 2.12
221 222 9.136952 CTTTCGCCCCGCTTTATATATATATAC 57.863 37.037 11.30 1.52 0.00 1.47
222 223 7.816031 GCTTTCGCCCCGCTTTATATATATATA 59.184 37.037 8.16 8.16 0.00 0.86
223 224 6.649557 GCTTTCGCCCCGCTTTATATATATAT 59.350 38.462 10.10 10.10 0.00 0.86
224 225 5.987347 GCTTTCGCCCCGCTTTATATATATA 59.013 40.000 0.00 0.00 0.00 0.86
225 226 4.814771 GCTTTCGCCCCGCTTTATATATAT 59.185 41.667 0.00 0.00 0.00 0.86
226 227 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
227 228 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
228 229 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
229 230 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
230 231 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
231 232 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
243 244 3.064134 GCTCGATGTAAGAAAGGGCTTTC 59.936 47.826 0.00 0.00 46.85 2.62
244 245 3.010420 GCTCGATGTAAGAAAGGGCTTT 58.990 45.455 0.00 0.00 35.14 3.51
245 246 2.237392 AGCTCGATGTAAGAAAGGGCTT 59.763 45.455 0.00 0.00 0.00 4.35
246 247 1.834263 AGCTCGATGTAAGAAAGGGCT 59.166 47.619 0.00 0.00 0.00 5.19
247 248 1.936547 CAGCTCGATGTAAGAAAGGGC 59.063 52.381 0.00 0.00 0.00 5.19
248 249 1.936547 GCAGCTCGATGTAAGAAAGGG 59.063 52.381 0.00 0.00 0.00 3.95
249 250 2.606725 CAGCAGCTCGATGTAAGAAAGG 59.393 50.000 0.00 0.00 0.00 3.11
250 251 2.030213 GCAGCAGCTCGATGTAAGAAAG 59.970 50.000 0.00 0.00 37.91 2.62
251 252 2.002586 GCAGCAGCTCGATGTAAGAAA 58.997 47.619 0.00 0.00 37.91 2.52
252 253 1.645034 GCAGCAGCTCGATGTAAGAA 58.355 50.000 0.00 0.00 37.91 2.52
253 254 0.179100 GGCAGCAGCTCGATGTAAGA 60.179 55.000 0.00 0.00 41.70 2.10
254 255 0.460811 TGGCAGCAGCTCGATGTAAG 60.461 55.000 0.00 0.00 41.70 2.34
255 256 0.178767 ATGGCAGCAGCTCGATGTAA 59.821 50.000 0.00 0.00 41.70 2.41
256 257 0.531311 CATGGCAGCAGCTCGATGTA 60.531 55.000 0.00 0.00 41.70 2.29
257 258 1.818363 CATGGCAGCAGCTCGATGT 60.818 57.895 0.00 0.00 41.70 3.06
258 259 0.531311 TACATGGCAGCAGCTCGATG 60.531 55.000 0.00 12.25 41.70 3.84
259 260 0.395686 ATACATGGCAGCAGCTCGAT 59.604 50.000 0.00 0.00 41.70 3.59
260 261 0.249615 GATACATGGCAGCAGCTCGA 60.250 55.000 0.00 0.00 41.70 4.04
261 262 1.554891 CGATACATGGCAGCAGCTCG 61.555 60.000 0.00 0.00 41.70 5.03
262 263 1.226686 CCGATACATGGCAGCAGCTC 61.227 60.000 0.00 0.00 41.70 4.09
263 264 1.227764 CCGATACATGGCAGCAGCT 60.228 57.895 0.00 0.00 41.70 4.24
264 265 2.256591 CCCGATACATGGCAGCAGC 61.257 63.158 0.00 0.00 41.10 5.25
265 266 4.054085 CCCGATACATGGCAGCAG 57.946 61.111 0.00 0.00 0.00 4.24
271 272 0.603707 ATTCGCAGCCCGATACATGG 60.604 55.000 0.00 0.00 46.81 3.66
272 273 2.078849 TATTCGCAGCCCGATACATG 57.921 50.000 0.00 0.00 46.81 3.21
273 274 2.621338 CATATTCGCAGCCCGATACAT 58.379 47.619 0.00 0.00 46.81 2.29
274 275 1.939381 GCATATTCGCAGCCCGATACA 60.939 52.381 0.00 0.00 46.81 2.29
275 276 0.721718 GCATATTCGCAGCCCGATAC 59.278 55.000 0.00 0.00 46.81 2.24
276 277 0.320050 TGCATATTCGCAGCCCGATA 59.680 50.000 0.00 0.00 46.81 2.92
277 278 0.321919 ATGCATATTCGCAGCCCGAT 60.322 50.000 0.00 0.00 46.99 4.18
278 279 0.950555 GATGCATATTCGCAGCCCGA 60.951 55.000 0.00 0.00 46.99 5.14
279 280 1.499056 GATGCATATTCGCAGCCCG 59.501 57.895 0.00 0.00 46.99 6.13
283 284 4.285292 GTTTTGGAGATGCATATTCGCAG 58.715 43.478 0.00 0.00 46.99 5.18
285 286 3.632189 GGTTTTGGAGATGCATATTCGC 58.368 45.455 0.00 0.00 0.00 4.70
286 287 3.303990 CCGGTTTTGGAGATGCATATTCG 60.304 47.826 0.00 0.00 0.00 3.34
287 288 3.550842 GCCGGTTTTGGAGATGCATATTC 60.551 47.826 1.90 0.00 0.00 1.75
288 289 2.362077 GCCGGTTTTGGAGATGCATATT 59.638 45.455 1.90 0.00 0.00 1.28
289 290 1.956477 GCCGGTTTTGGAGATGCATAT 59.044 47.619 1.90 0.00 0.00 1.78
290 291 1.388547 GCCGGTTTTGGAGATGCATA 58.611 50.000 1.90 0.00 0.00 3.14
291 292 1.656818 CGCCGGTTTTGGAGATGCAT 61.657 55.000 1.90 0.00 0.00 3.96
292 293 2.331893 CGCCGGTTTTGGAGATGCA 61.332 57.895 1.90 0.00 0.00 3.96
293 294 2.038269 TCGCCGGTTTTGGAGATGC 61.038 57.895 1.90 0.00 32.50 3.91
294 295 1.644786 GGTCGCCGGTTTTGGAGATG 61.645 60.000 1.90 0.00 40.08 2.90
295 296 1.376812 GGTCGCCGGTTTTGGAGAT 60.377 57.895 1.90 0.00 40.08 2.75
296 297 2.031465 GGTCGCCGGTTTTGGAGA 59.969 61.111 1.90 0.00 35.30 3.71
297 298 3.053896 GGGTCGCCGGTTTTGGAG 61.054 66.667 1.90 0.00 0.00 3.86
298 299 4.992511 CGGGTCGCCGGTTTTGGA 62.993 66.667 1.90 0.00 0.00 3.53
299 300 4.992511 TCGGGTCGCCGGTTTTGG 62.993 66.667 1.90 0.00 0.00 3.28
300 301 2.248274 GATTCGGGTCGCCGGTTTTG 62.248 60.000 1.90 0.00 0.00 2.44
301 302 2.032987 ATTCGGGTCGCCGGTTTT 59.967 55.556 1.90 0.00 0.00 2.43
302 303 2.435410 GATTCGGGTCGCCGGTTT 60.435 61.111 1.90 0.00 0.00 3.27
303 304 4.807039 CGATTCGGGTCGCCGGTT 62.807 66.667 1.90 0.00 34.56 4.44
314 315 2.833794 TGCCTCTTAATTCCCGATTCG 58.166 47.619 0.00 0.00 0.00 3.34
315 316 4.451900 TCTTGCCTCTTAATTCCCGATTC 58.548 43.478 0.00 0.00 0.00 2.52
316 317 4.164221 TCTCTTGCCTCTTAATTCCCGATT 59.836 41.667 0.00 0.00 0.00 3.34
317 318 3.711704 TCTCTTGCCTCTTAATTCCCGAT 59.288 43.478 0.00 0.00 0.00 4.18
318 319 3.104512 TCTCTTGCCTCTTAATTCCCGA 58.895 45.455 0.00 0.00 0.00 5.14
319 320 3.133003 TCTCTCTTGCCTCTTAATTCCCG 59.867 47.826 0.00 0.00 0.00 5.14
320 321 4.762289 TCTCTCTTGCCTCTTAATTCCC 57.238 45.455 0.00 0.00 0.00 3.97
321 322 5.062528 CCATCTCTCTTGCCTCTTAATTCC 58.937 45.833 0.00 0.00 0.00 3.01
322 323 5.923204 TCCATCTCTCTTGCCTCTTAATTC 58.077 41.667 0.00 0.00 0.00 2.17
323 324 5.664908 TCTCCATCTCTCTTGCCTCTTAATT 59.335 40.000 0.00 0.00 0.00 1.40
324 325 5.070313 GTCTCCATCTCTCTTGCCTCTTAAT 59.930 44.000 0.00 0.00 0.00 1.40
325 326 4.404073 GTCTCCATCTCTCTTGCCTCTTAA 59.596 45.833 0.00 0.00 0.00 1.85
326 327 3.957497 GTCTCCATCTCTCTTGCCTCTTA 59.043 47.826 0.00 0.00 0.00 2.10
327 328 2.765699 GTCTCCATCTCTCTTGCCTCTT 59.234 50.000 0.00 0.00 0.00 2.85
328 329 2.387757 GTCTCCATCTCTCTTGCCTCT 58.612 52.381 0.00 0.00 0.00 3.69
329 330 1.066908 CGTCTCCATCTCTCTTGCCTC 59.933 57.143 0.00 0.00 0.00 4.70
330 331 1.110442 CGTCTCCATCTCTCTTGCCT 58.890 55.000 0.00 0.00 0.00 4.75
331 332 0.529555 GCGTCTCCATCTCTCTTGCC 60.530 60.000 0.00 0.00 0.00 4.52
332 333 0.174389 TGCGTCTCCATCTCTCTTGC 59.826 55.000 0.00 0.00 0.00 4.01
333 334 1.796982 CGTGCGTCTCCATCTCTCTTG 60.797 57.143 0.00 0.00 0.00 3.02
334 335 0.453793 CGTGCGTCTCCATCTCTCTT 59.546 55.000 0.00 0.00 0.00 2.85
335 336 0.393132 TCGTGCGTCTCCATCTCTCT 60.393 55.000 0.00 0.00 0.00 3.10
336 337 0.452184 TTCGTGCGTCTCCATCTCTC 59.548 55.000 0.00 0.00 0.00 3.20
337 338 0.453793 CTTCGTGCGTCTCCATCTCT 59.546 55.000 0.00 0.00 0.00 3.10
338 339 0.452184 TCTTCGTGCGTCTCCATCTC 59.548 55.000 0.00 0.00 0.00 2.75
339 340 0.453793 CTCTTCGTGCGTCTCCATCT 59.546 55.000 0.00 0.00 0.00 2.90
340 341 0.452184 TCTCTTCGTGCGTCTCCATC 59.548 55.000 0.00 0.00 0.00 3.51
341 342 0.888619 TTCTCTTCGTGCGTCTCCAT 59.111 50.000 0.00 0.00 0.00 3.41
342 343 0.671796 TTTCTCTTCGTGCGTCTCCA 59.328 50.000 0.00 0.00 0.00 3.86
343 344 1.341606 CTTTCTCTTCGTGCGTCTCC 58.658 55.000 0.00 0.00 0.00 3.71
344 345 1.068472 TCCTTTCTCTTCGTGCGTCTC 60.068 52.381 0.00 0.00 0.00 3.36
345 346 0.959553 TCCTTTCTCTTCGTGCGTCT 59.040 50.000 0.00 0.00 0.00 4.18
346 347 1.068472 TCTCCTTTCTCTTCGTGCGTC 60.068 52.381 0.00 0.00 0.00 5.19
347 348 0.959553 TCTCCTTTCTCTTCGTGCGT 59.040 50.000 0.00 0.00 0.00 5.24
348 349 1.068194 AGTCTCCTTTCTCTTCGTGCG 60.068 52.381 0.00 0.00 0.00 5.34
349 350 2.029828 TCAGTCTCCTTTCTCTTCGTGC 60.030 50.000 0.00 0.00 0.00 5.34
350 351 3.924918 TCAGTCTCCTTTCTCTTCGTG 57.075 47.619 0.00 0.00 0.00 4.35
351 352 3.892588 ACTTCAGTCTCCTTTCTCTTCGT 59.107 43.478 0.00 0.00 0.00 3.85
352 353 4.513198 ACTTCAGTCTCCTTTCTCTTCG 57.487 45.455 0.00 0.00 0.00 3.79
353 354 5.336929 GGGTACTTCAGTCTCCTTTCTCTTC 60.337 48.000 0.00 0.00 0.00 2.87
354 355 4.528987 GGGTACTTCAGTCTCCTTTCTCTT 59.471 45.833 0.00 0.00 0.00 2.85
355 356 4.090819 GGGTACTTCAGTCTCCTTTCTCT 58.909 47.826 0.00 0.00 0.00 3.10
356 357 3.196039 GGGGTACTTCAGTCTCCTTTCTC 59.804 52.174 0.00 0.00 0.00 2.87
357 358 3.174779 GGGGTACTTCAGTCTCCTTTCT 58.825 50.000 0.00 0.00 0.00 2.52
358 359 2.236644 GGGGGTACTTCAGTCTCCTTTC 59.763 54.545 0.00 0.00 0.00 2.62
359 360 2.157989 AGGGGGTACTTCAGTCTCCTTT 60.158 50.000 0.00 0.00 0.00 3.11
360 361 1.437547 AGGGGGTACTTCAGTCTCCTT 59.562 52.381 0.00 0.00 0.00 3.36
361 362 1.007359 GAGGGGGTACTTCAGTCTCCT 59.993 57.143 0.00 0.00 0.00 3.69
362 363 1.487300 GAGGGGGTACTTCAGTCTCC 58.513 60.000 0.00 0.00 0.00 3.71
363 364 1.487300 GGAGGGGGTACTTCAGTCTC 58.513 60.000 0.00 0.00 0.00 3.36
364 365 0.324460 CGGAGGGGGTACTTCAGTCT 60.324 60.000 0.00 0.00 0.00 3.24
365 366 2.200052 CGGAGGGGGTACTTCAGTC 58.800 63.158 0.00 0.00 0.00 3.51
366 367 4.455366 CGGAGGGGGTACTTCAGT 57.545 61.111 0.00 0.00 0.00 3.41
379 380 3.869065 TGCATAGTAAAAAGGACCGGAG 58.131 45.455 9.46 0.00 0.00 4.63
380 381 3.985019 TGCATAGTAAAAAGGACCGGA 57.015 42.857 9.46 0.00 0.00 5.14
381 382 7.972832 TTATATGCATAGTAAAAAGGACCGG 57.027 36.000 12.79 0.00 0.00 5.28
410 411 9.832445 AGACTTTATGAAGTTTGACTTTAGACA 57.168 29.630 4.16 0.00 45.88 3.41
415 416 9.403583 TGGTTAGACTTTATGAAGTTTGACTTT 57.596 29.630 13.03 0.00 45.88 2.66
416 417 8.974060 TGGTTAGACTTTATGAAGTTTGACTT 57.026 30.769 13.03 0.00 45.88 3.01
455 456 9.632638 ACTTTAGCATGGTAGATGTTGATATTT 57.367 29.630 4.57 0.00 0.00 1.40
456 457 9.632638 AACTTTAGCATGGTAGATGTTGATATT 57.367 29.630 4.57 0.00 0.00 1.28
460 461 9.542462 GTATAACTTTAGCATGGTAGATGTTGA 57.458 33.333 19.77 11.00 0.00 3.18
461 462 9.325198 TGTATAACTTTAGCATGGTAGATGTTG 57.675 33.333 19.77 4.56 0.00 3.33
462 463 9.899661 TTGTATAACTTTAGCATGGTAGATGTT 57.100 29.630 17.07 17.07 0.00 2.71
561 562 9.607988 CAACCCTTCTAAAATTTAACCAACTTT 57.392 29.630 0.00 0.00 0.00 2.66
562 563 8.983789 TCAACCCTTCTAAAATTTAACCAACTT 58.016 29.630 0.00 0.00 0.00 2.66
563 564 8.541899 TCAACCCTTCTAAAATTTAACCAACT 57.458 30.769 0.00 0.00 0.00 3.16
564 565 9.772973 AATCAACCCTTCTAAAATTTAACCAAC 57.227 29.630 0.00 0.00 0.00 3.77
576 577 9.807921 AGATTTGTCTAAAATCAACCCTTCTAA 57.192 29.630 12.05 0.00 38.70 2.10
577 578 9.807921 AAGATTTGTCTAAAATCAACCCTTCTA 57.192 29.630 12.05 0.00 38.70 2.10
578 579 8.712228 AAGATTTGTCTAAAATCAACCCTTCT 57.288 30.769 12.05 0.00 38.70 2.85
579 580 9.764363 AAAAGATTTGTCTAAAATCAACCCTTC 57.236 29.630 12.05 0.00 38.70 3.46
582 583 9.124807 CGTAAAAGATTTGTCTAAAATCAACCC 57.875 33.333 12.05 0.00 38.70 4.11
583 584 8.635983 GCGTAAAAGATTTGTCTAAAATCAACC 58.364 33.333 12.05 0.00 38.70 3.77
584 585 8.355806 CGCGTAAAAGATTTGTCTAAAATCAAC 58.644 33.333 12.05 5.20 38.70 3.18
585 586 8.283992 TCGCGTAAAAGATTTGTCTAAAATCAA 58.716 29.630 5.77 0.00 38.70 2.57
586 587 7.798801 TCGCGTAAAAGATTTGTCTAAAATCA 58.201 30.769 5.77 0.00 38.70 2.57
587 588 8.564766 GTTCGCGTAAAAGATTTGTCTAAAATC 58.435 33.333 5.77 3.18 37.01 2.17
588 589 8.287503 AGTTCGCGTAAAAGATTTGTCTAAAAT 58.712 29.630 5.77 0.00 0.00 1.82
589 590 7.632721 AGTTCGCGTAAAAGATTTGTCTAAAA 58.367 30.769 5.77 0.00 0.00 1.52
590 591 7.181143 AGTTCGCGTAAAAGATTTGTCTAAA 57.819 32.000 5.77 0.00 0.00 1.85
591 592 6.774354 AGTTCGCGTAAAAGATTTGTCTAA 57.226 33.333 5.77 0.00 0.00 2.10
592 593 7.872163 TTAGTTCGCGTAAAAGATTTGTCTA 57.128 32.000 5.77 0.00 0.00 2.59
593 594 6.774354 TTAGTTCGCGTAAAAGATTTGTCT 57.226 33.333 5.77 0.00 0.00 3.41
594 595 7.067728 AGTTTAGTTCGCGTAAAAGATTTGTC 58.932 34.615 5.77 0.00 0.00 3.18
595 596 6.951643 AGTTTAGTTCGCGTAAAAGATTTGT 58.048 32.000 5.77 0.00 0.00 2.83
596 597 8.922738 TTAGTTTAGTTCGCGTAAAAGATTTG 57.077 30.769 5.77 0.00 0.00 2.32
597 598 9.934190 TTTTAGTTTAGTTCGCGTAAAAGATTT 57.066 25.926 5.77 0.00 0.00 2.17
598 599 9.934190 TTTTTAGTTTAGTTCGCGTAAAAGATT 57.066 25.926 5.77 0.00 0.00 2.40
599 600 9.590088 CTTTTTAGTTTAGTTCGCGTAAAAGAT 57.410 29.630 5.77 0.00 33.94 2.40
600 601 8.816144 TCTTTTTAGTTTAGTTCGCGTAAAAGA 58.184 29.630 5.77 2.75 36.99 2.52
601 602 8.976715 TCTTTTTAGTTTAGTTCGCGTAAAAG 57.023 30.769 5.77 0.20 33.59 2.27
602 603 9.766277 TTTCTTTTTAGTTTAGTTCGCGTAAAA 57.234 25.926 5.77 4.47 0.00 1.52
603 604 9.424659 CTTTCTTTTTAGTTTAGTTCGCGTAAA 57.575 29.630 5.77 0.51 0.00 2.01
604 605 8.063630 CCTTTCTTTTTAGTTTAGTTCGCGTAA 58.936 33.333 5.77 0.00 0.00 3.18
605 606 7.437862 TCCTTTCTTTTTAGTTTAGTTCGCGTA 59.562 33.333 5.77 0.00 0.00 4.42
606 607 6.258507 TCCTTTCTTTTTAGTTTAGTTCGCGT 59.741 34.615 5.77 0.00 0.00 6.01
607 608 6.572621 GTCCTTTCTTTTTAGTTTAGTTCGCG 59.427 38.462 0.00 0.00 0.00 5.87
608 609 6.854892 GGTCCTTTCTTTTTAGTTTAGTTCGC 59.145 38.462 0.00 0.00 0.00 4.70
609 610 7.067728 CGGTCCTTTCTTTTTAGTTTAGTTCG 58.932 38.462 0.00 0.00 0.00 3.95
610 611 7.227314 TCCGGTCCTTTCTTTTTAGTTTAGTTC 59.773 37.037 0.00 0.00 0.00 3.01
611 612 7.056006 TCCGGTCCTTTCTTTTTAGTTTAGTT 58.944 34.615 0.00 0.00 0.00 2.24
612 613 6.594744 TCCGGTCCTTTCTTTTTAGTTTAGT 58.405 36.000 0.00 0.00 0.00 2.24
613 614 7.361799 CCATCCGGTCCTTTCTTTTTAGTTTAG 60.362 40.741 0.00 0.00 0.00 1.85
614 615 6.431852 CCATCCGGTCCTTTCTTTTTAGTTTA 59.568 38.462 0.00 0.00 0.00 2.01
615 616 5.243060 CCATCCGGTCCTTTCTTTTTAGTTT 59.757 40.000 0.00 0.00 0.00 2.66
616 617 4.765339 CCATCCGGTCCTTTCTTTTTAGTT 59.235 41.667 0.00 0.00 0.00 2.24
617 618 4.042435 TCCATCCGGTCCTTTCTTTTTAGT 59.958 41.667 0.00 0.00 0.00 2.24
618 619 4.585879 TCCATCCGGTCCTTTCTTTTTAG 58.414 43.478 0.00 0.00 0.00 1.85
619 620 4.042435 ACTCCATCCGGTCCTTTCTTTTTA 59.958 41.667 0.00 0.00 0.00 1.52
620 621 3.181433 ACTCCATCCGGTCCTTTCTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
621 622 2.375509 ACTCCATCCGGTCCTTTCTTTT 59.624 45.455 0.00 0.00 0.00 2.27
622 623 1.985895 ACTCCATCCGGTCCTTTCTTT 59.014 47.619 0.00 0.00 0.00 2.52
623 624 1.279271 CACTCCATCCGGTCCTTTCTT 59.721 52.381 0.00 0.00 0.00 2.52
624 625 0.905357 CACTCCATCCGGTCCTTTCT 59.095 55.000 0.00 0.00 0.00 2.52
625 626 0.744771 GCACTCCATCCGGTCCTTTC 60.745 60.000 0.00 0.00 0.00 2.62
626 627 1.201429 AGCACTCCATCCGGTCCTTT 61.201 55.000 0.00 0.00 0.00 3.11
627 628 0.325296 TAGCACTCCATCCGGTCCTT 60.325 55.000 0.00 0.00 0.00 3.36
628 629 1.043673 GTAGCACTCCATCCGGTCCT 61.044 60.000 0.00 0.00 0.00 3.85
629 630 1.043673 AGTAGCACTCCATCCGGTCC 61.044 60.000 0.00 0.00 0.00 4.46
630 631 0.824759 AAGTAGCACTCCATCCGGTC 59.175 55.000 0.00 0.00 0.00 4.79
631 632 0.824759 GAAGTAGCACTCCATCCGGT 59.175 55.000 0.00 0.00 0.00 5.28
632 633 0.105039 GGAAGTAGCACTCCATCCGG 59.895 60.000 0.00 0.00 0.00 5.14
633 634 0.824109 TGGAAGTAGCACTCCATCCG 59.176 55.000 0.00 0.00 0.00 4.18
634 635 1.134371 GGTGGAAGTAGCACTCCATCC 60.134 57.143 0.00 0.65 31.50 3.51
635 636 1.834263 AGGTGGAAGTAGCACTCCATC 59.166 52.381 0.00 0.00 31.50 3.51
636 637 1.556911 CAGGTGGAAGTAGCACTCCAT 59.443 52.381 0.00 0.00 31.50 3.41
637 638 0.976641 CAGGTGGAAGTAGCACTCCA 59.023 55.000 0.00 0.00 0.00 3.86
638 639 0.391793 GCAGGTGGAAGTAGCACTCC 60.392 60.000 0.00 0.00 0.00 3.85
639 640 0.391793 GGCAGGTGGAAGTAGCACTC 60.392 60.000 0.00 0.00 0.00 3.51
640 641 0.838122 AGGCAGGTGGAAGTAGCACT 60.838 55.000 0.00 0.00 0.00 4.40
641 642 0.391793 GAGGCAGGTGGAAGTAGCAC 60.392 60.000 0.00 0.00 0.00 4.40
642 643 1.553690 GGAGGCAGGTGGAAGTAGCA 61.554 60.000 0.00 0.00 0.00 3.49
643 644 1.222113 GGAGGCAGGTGGAAGTAGC 59.778 63.158 0.00 0.00 0.00 3.58
668 669 2.174639 GAGAGAGAGATCTGAGGGTGGA 59.825 54.545 0.00 0.00 0.00 4.02
688 689 3.129638 GCGCTTTAGAGAAAGGAGAGAGA 59.870 47.826 0.00 0.00 42.12 3.10
689 690 3.443976 GCGCTTTAGAGAAAGGAGAGAG 58.556 50.000 0.00 0.00 42.12 3.20
690 691 2.159366 CGCGCTTTAGAGAAAGGAGAGA 60.159 50.000 5.56 0.00 42.12 3.10
691 692 2.189342 CGCGCTTTAGAGAAAGGAGAG 58.811 52.381 5.56 0.00 42.12 3.20
692 693 1.736032 GCGCGCTTTAGAGAAAGGAGA 60.736 52.381 26.67 0.00 42.12 3.71
693 694 0.647925 GCGCGCTTTAGAGAAAGGAG 59.352 55.000 26.67 0.00 42.12 3.69
694 695 0.739813 GGCGCGCTTTAGAGAAAGGA 60.740 55.000 32.29 0.00 42.12 3.36
815 822 3.024547 TCACCCCGAACAGATAAGAGAG 58.975 50.000 0.00 0.00 0.00 3.20
908 917 2.809601 CTGCCGTCGCGCTAAACT 60.810 61.111 5.56 0.00 38.08 2.66
1172 1181 0.518636 CACACGGAGCATGTTTGAGG 59.481 55.000 0.00 0.00 0.00 3.86
1189 1199 3.863142 ATTCAGCAAGCAGGAAATCAC 57.137 42.857 0.00 0.00 0.00 3.06
1249 1259 6.227522 TCCACGTATTTTCAGAATTGACAGA 58.772 36.000 0.00 0.00 31.71 3.41
1770 1780 9.559958 CTTATGGTGTGAGTTCAATTTTCATAC 57.440 33.333 0.00 0.00 33.74 2.39
1781 1791 9.612620 CTAAAAATTGACTTATGGTGTGAGTTC 57.387 33.333 0.00 0.00 0.00 3.01
1818 1828 1.974973 TATTTTCGGACGGAGGGGGC 61.975 60.000 0.00 0.00 0.00 5.80
1819 1829 0.179065 GTATTTTCGGACGGAGGGGG 60.179 60.000 0.00 0.00 0.00 5.40
1820 1830 0.828677 AGTATTTTCGGACGGAGGGG 59.171 55.000 0.00 0.00 0.00 4.79
1821 1831 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1822 1832 1.664151 GCAAGTATTTTCGGACGGAGG 59.336 52.381 0.00 0.00 0.00 4.30
1823 1833 1.664151 GGCAAGTATTTTCGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
1824 1834 1.002201 TGGCAAGTATTTTCGGACGGA 59.998 47.619 0.00 0.00 0.00 4.69
1825 1835 1.444836 TGGCAAGTATTTTCGGACGG 58.555 50.000 0.00 0.00 0.00 4.79
1826 1836 2.675844 TGATGGCAAGTATTTTCGGACG 59.324 45.455 0.00 0.00 0.00 4.79
1827 1837 4.695217 TTGATGGCAAGTATTTTCGGAC 57.305 40.909 0.00 0.00 0.00 4.79
1829 1839 5.291614 CCATTTTGATGGCAAGTATTTTCGG 59.708 40.000 0.00 0.00 35.04 4.30
1830 1840 6.098679 TCCATTTTGATGGCAAGTATTTTCG 58.901 36.000 0.00 0.00 41.43 3.46
1831 1841 9.598517 TTATCCATTTTGATGGCAAGTATTTTC 57.401 29.630 0.00 0.00 41.43 2.29
1833 1843 9.956640 TTTTATCCATTTTGATGGCAAGTATTT 57.043 25.926 0.00 0.00 41.43 1.40
1835 1845 9.603921 CTTTTTATCCATTTTGATGGCAAGTAT 57.396 29.630 0.00 0.00 41.43 2.12
1836 1846 8.592809 ACTTTTTATCCATTTTGATGGCAAGTA 58.407 29.630 0.00 0.00 41.43 2.24
1837 1847 7.388500 CACTTTTTATCCATTTTGATGGCAAGT 59.612 33.333 0.00 2.23 41.43 3.16
1838 1848 7.603404 TCACTTTTTATCCATTTTGATGGCAAG 59.397 33.333 0.00 1.73 41.43 4.01
1839 1849 7.448420 TCACTTTTTATCCATTTTGATGGCAA 58.552 30.769 0.00 0.00 41.43 4.52
1840 1850 7.002250 TCACTTTTTATCCATTTTGATGGCA 57.998 32.000 0.00 0.00 41.43 4.92
1841 1851 7.550196 ACATCACTTTTTATCCATTTTGATGGC 59.450 33.333 11.71 0.00 42.15 4.40
1883 1893 9.132923 TGGATAAAAGAAGATGTATCTAGACGT 57.867 33.333 0.00 0.00 35.76 4.34
1896 1906 9.912634 GTTGTCATCAAAATGGATAAAAGAAGA 57.087 29.630 0.00 0.00 35.20 2.87
1897 1907 9.918630 AGTTGTCATCAAAATGGATAAAAGAAG 57.081 29.630 0.00 0.00 35.20 2.85
1904 1914 8.620416 CGGAAATAGTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 35.20 2.59
1905 1915 7.416664 CCGGAAATAGTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 35.20 3.41
1906 1916 6.127758 CCGGAAATAGTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 35.20 3.41
1907 1917 6.035843 CCGGAAATAGTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 35.20 3.16
1908 1918 6.747280 GTCCGGAAATAGTTGTCATCAAAATG 59.253 38.462 5.23 0.00 35.20 2.32
1909 1919 6.403200 CGTCCGGAAATAGTTGTCATCAAAAT 60.403 38.462 5.23 0.00 35.20 1.82
1910 1920 5.106869 CGTCCGGAAATAGTTGTCATCAAAA 60.107 40.000 5.23 0.00 35.20 2.44
1911 1921 4.390603 CGTCCGGAAATAGTTGTCATCAAA 59.609 41.667 5.23 0.00 35.20 2.69
1912 1922 3.930229 CGTCCGGAAATAGTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1913 1923 3.517602 CGTCCGGAAATAGTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1914 1924 2.864343 CCGTCCGGAAATAGTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1915 1925 2.498481 TCCGTCCGGAAATAGTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1916 1926 1.894466 TCCGTCCGGAAATAGTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1917 1927 2.537401 CTCCGTCCGGAAATAGTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1918 1928 1.206371 CCTCCGTCCGGAAATAGTTGT 59.794 52.381 5.23 0.00 44.66 3.32
1919 1929 1.472728 CCCTCCGTCCGGAAATAGTTG 60.473 57.143 5.23 0.00 44.66 3.16
1920 1930 0.828677 CCCTCCGTCCGGAAATAGTT 59.171 55.000 5.23 0.00 44.66 2.24
1921 1931 0.032813 TCCCTCCGTCCGGAAATAGT 60.033 55.000 5.23 0.00 44.66 2.12
1922 1932 0.674534 CTCCCTCCGTCCGGAAATAG 59.325 60.000 5.23 3.15 44.66 1.73
1923 1933 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1924 1934 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1925 1935 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1926 1936 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1927 1937 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
1928 1938 0.107017 TAAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
1929 1939 1.307097 CTAAGTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
1930 1940 1.064091 ACCTAAGTACTCCCTCCGTCC 60.064 57.143 0.00 0.00 0.00 4.79
1931 1941 2.433662 ACCTAAGTACTCCCTCCGTC 57.566 55.000 0.00 0.00 0.00 4.79
1932 1942 3.289407 GTACCTAAGTACTCCCTCCGT 57.711 52.381 0.00 0.00 44.65 4.69
1974 1985 2.519771 AGAGAAAATCATGGCAGGCA 57.480 45.000 0.00 0.00 0.00 4.75
1980 1991 5.228635 CGCAAATTCGAAGAGAAAATCATGG 59.771 40.000 3.35 0.00 42.91 3.66
2110 2129 7.865706 ATGTAATCCAGATTTTACAGACCAC 57.134 36.000 0.00 0.00 40.53 4.16
2151 2170 6.875948 TTCTCATAAGCTGTGCAGTTAAAA 57.124 33.333 0.00 0.00 0.00 1.52
2224 2243 9.760926 AGACTCACTGGCAATATTATATCTCTA 57.239 33.333 0.00 0.00 0.00 2.43
2225 2244 8.663209 AGACTCACTGGCAATATTATATCTCT 57.337 34.615 0.00 0.00 0.00 3.10
2428 3612 7.829725 TCATCCCAATGATTAACTTTGTTGAG 58.170 34.615 0.00 0.00 36.98 3.02
2534 3718 0.110486 TCTTTCACTGTGGGGAAGGC 59.890 55.000 8.11 0.00 0.00 4.35
2705 3889 5.809001 AGAGTCATTTGGTCTGCTAATTGA 58.191 37.500 0.00 0.00 0.00 2.57
2861 4045 5.420409 CGAGTTATTATAGGATGGGCTTCC 58.580 45.833 0.00 0.00 35.90 3.46
2893 4077 5.671493 AGTCCTGCGCTTTGTATATTAACT 58.329 37.500 9.73 0.00 0.00 2.24
3168 4352 2.609459 CCAGCACATTATCCGAGAACAC 59.391 50.000 0.00 0.00 0.00 3.32
3170 4354 1.599542 GCCAGCACATTATCCGAGAAC 59.400 52.381 0.00 0.00 0.00 3.01
3323 4507 0.249447 TGCAGTGGACTTCGACAGTG 60.249 55.000 5.20 4.91 40.21 3.66
3437 4621 4.022676 TGGAACTTTATTTCCCGTTCTTGC 60.023 41.667 0.00 0.00 44.11 4.01
3710 4894 0.105246 TTCCAAAAGCCCACCCACAT 60.105 50.000 0.00 0.00 0.00 3.21
3841 5025 5.337578 GCCATAAAATGTCAAAAGGCCTA 57.662 39.130 5.16 0.00 34.94 3.93
4131 5315 8.422577 AAAGCAACCCTATTAAAGAAACTGAT 57.577 30.769 0.00 0.00 0.00 2.90
4442 5653 9.840427 AATACAATAACCTGAAAAGAATGAACG 57.160 29.630 0.00 0.00 0.00 3.95
4521 5732 6.308282 CCAAGTTCGTACTGTGAAGAATACTC 59.692 42.308 0.00 0.00 34.01 2.59
4544 5755 4.199002 TCCTATATCTCCAGTTGAGCCA 57.801 45.455 0.00 0.00 41.18 4.75
4615 5826 5.627499 TGCAATTTTCTCTTCGCTATGTT 57.373 34.783 0.00 0.00 0.00 2.71
4722 5934 5.734498 GCATCTGCTACAAAAATTGACTACG 59.266 40.000 0.00 0.00 38.21 3.51
4749 5961 3.262405 ACGCCATAAGAACCTTGGACTTA 59.738 43.478 10.94 10.94 31.94 2.24
4859 6857 2.741517 ACAGCCAAAGTTGCACAAAAAC 59.258 40.909 0.00 0.00 0.00 2.43
4868 6866 3.130340 AGGTTACAACACAGCCAAAGTTG 59.870 43.478 0.00 0.00 45.97 3.16
4892 6890 3.133003 ACATCACTGCGAAGGTTATAGCT 59.867 43.478 0.00 0.00 0.00 3.32
4896 6894 3.610040 TCACATCACTGCGAAGGTTAT 57.390 42.857 0.00 0.00 0.00 1.89
4906 6904 1.901591 AGCCAAGGTTCACATCACTG 58.098 50.000 0.00 0.00 0.00 3.66
4929 6927 1.873591 GGCAACACTTAGTGGTCACAG 59.126 52.381 17.21 0.00 37.94 3.66
5015 8132 3.374058 CCCGATCCACATAGAACAAACAC 59.626 47.826 0.00 0.00 0.00 3.32
5024 8141 2.368548 TCAACCATCCCGATCCACATAG 59.631 50.000 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.