Multiple sequence alignment - TraesCS4B01G159600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G159600 chr4B 100.000 3211 0 0 1 3211 310167241 310164031 0.000000e+00 5930.0
1 TraesCS4B01G159600 chr4B 100.000 28 0 0 1208 1235 463382948 463382975 6.000000e-03 52.8
2 TraesCS4B01G159600 chr4D 96.720 1433 31 5 977 2398 259155518 259156945 0.000000e+00 2372.0
3 TraesCS4B01G159600 chr4D 93.188 734 44 5 1 729 210262574 210263306 0.000000e+00 1074.0
4 TraesCS4B01G159600 chr4D 97.143 210 6 0 2462 2671 259157322 259157531 3.940000e-94 355.0
5 TraesCS4B01G159600 chr4D 96.933 163 4 1 2740 2902 259157531 259157692 4.080000e-69 272.0
6 TraesCS4B01G159600 chr4A 95.277 1334 51 5 930 2257 202222379 202221052 0.000000e+00 2104.0
7 TraesCS4B01G159600 chr4A 92.778 360 17 4 2547 2901 202220820 202220465 2.210000e-141 512.0
8 TraesCS4B01G159600 chr4A 94.156 154 5 1 2255 2408 202221018 202220869 6.930000e-57 231.0
9 TraesCS4B01G159600 chr4A 100.000 29 0 0 1208 1236 684634461 684634489 2.000000e-03 54.7
10 TraesCS4B01G159600 chr5D 93.197 735 45 4 1 730 143307524 143308258 0.000000e+00 1075.0
11 TraesCS4B01G159600 chr5D 93.052 734 46 4 1 729 188204014 188203281 0.000000e+00 1068.0
12 TraesCS4B01G159600 chrUn 93.061 735 46 4 1 730 130982289 130983023 0.000000e+00 1070.0
13 TraesCS4B01G159600 chrUn 93.052 734 45 5 1 729 106047474 106046742 0.000000e+00 1068.0
14 TraesCS4B01G159600 chr7D 93.061 735 46 4 1 730 339818120 339818854 0.000000e+00 1070.0
15 TraesCS4B01G159600 chr7D 100.000 28 0 0 1208 1235 501536417 501536390 6.000000e-03 52.8
16 TraesCS4B01G159600 chr7D 100.000 28 0 0 1208 1235 501581688 501581661 6.000000e-03 52.8
17 TraesCS4B01G159600 chr2D 93.061 735 46 4 1 730 271073555 271072821 0.000000e+00 1070.0
18 TraesCS4B01G159600 chr2D 93.052 734 46 4 1 729 269151290 269150557 0.000000e+00 1068.0
19 TraesCS4B01G159600 chr2D 93.052 734 45 5 1 729 270297899 270298631 0.000000e+00 1068.0
20 TraesCS4B01G159600 chr2D 97.674 43 1 0 2806 2848 471214613 471214655 1.240000e-09 75.0
21 TraesCS4B01G159600 chr5B 96.078 51 2 0 2801 2851 554156884 554156934 2.050000e-12 84.2
22 TraesCS4B01G159600 chr5B 100.000 28 0 0 1208 1235 65510794 65510767 6.000000e-03 52.8
23 TraesCS4B01G159600 chr6D 92.453 53 4 0 2800 2852 355863379 355863431 3.430000e-10 76.8
24 TraesCS4B01G159600 chr6D 90.385 52 5 0 2795 2846 445860250 445860301 5.750000e-08 69.4
25 TraesCS4B01G159600 chr6D 97.059 34 0 1 773 805 429080019 429079986 4.470000e-04 56.5
26 TraesCS4B01G159600 chr1D 93.878 49 3 0 2801 2849 7343472 7343520 1.240000e-09 75.0
27 TraesCS4B01G159600 chr7B 92.308 52 3 1 2794 2845 222310271 222310321 4.440000e-09 73.1
28 TraesCS4B01G159600 chr5A 92.157 51 4 0 2801 2851 572811367 572811417 4.440000e-09 73.1
29 TraesCS4B01G159600 chr1A 100.000 29 0 0 1208 1236 256542691 256542663 2.000000e-03 54.7
30 TraesCS4B01G159600 chr2B 100.000 28 0 0 1208 1235 394335670 394335697 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G159600 chr4B 310164031 310167241 3210 True 5930.000000 5930 100.000000 1 3211 1 chr4B.!!$R1 3210
1 TraesCS4B01G159600 chr4D 210262574 210263306 732 False 1074.000000 1074 93.188000 1 729 1 chr4D.!!$F1 728
2 TraesCS4B01G159600 chr4D 259155518 259157692 2174 False 999.666667 2372 96.932000 977 2902 3 chr4D.!!$F2 1925
3 TraesCS4B01G159600 chr4A 202220465 202222379 1914 True 949.000000 2104 94.070333 930 2901 3 chr4A.!!$R1 1971
4 TraesCS4B01G159600 chr5D 143307524 143308258 734 False 1075.000000 1075 93.197000 1 730 1 chr5D.!!$F1 729
5 TraesCS4B01G159600 chr5D 188203281 188204014 733 True 1068.000000 1068 93.052000 1 729 1 chr5D.!!$R1 728
6 TraesCS4B01G159600 chrUn 130982289 130983023 734 False 1070.000000 1070 93.061000 1 730 1 chrUn.!!$F1 729
7 TraesCS4B01G159600 chrUn 106046742 106047474 732 True 1068.000000 1068 93.052000 1 729 1 chrUn.!!$R1 728
8 TraesCS4B01G159600 chr7D 339818120 339818854 734 False 1070.000000 1070 93.061000 1 730 1 chr7D.!!$F1 729
9 TraesCS4B01G159600 chr2D 271072821 271073555 734 True 1070.000000 1070 93.061000 1 730 1 chr2D.!!$R2 729
10 TraesCS4B01G159600 chr2D 269150557 269151290 733 True 1068.000000 1068 93.052000 1 729 1 chr2D.!!$R1 728
11 TraesCS4B01G159600 chr2D 270297899 270298631 732 False 1068.000000 1068 93.052000 1 729 1 chr2D.!!$F1 728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 242 0.03601 AATGTCGTGGCCCTTGAGAG 60.036 55.0 0.0 0.0 0.0 3.20 F
1050 1057 0.10462 ACCCCAGCCCTAATACCGAT 60.105 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1088 0.104120 CGTCGACCATGGGAAGCATA 59.896 55.0 18.09 0.0 0.00 3.14 R
2985 3402 0.038618 TAATCGTGTGCGCTGAGTGT 60.039 50.0 9.73 0.0 38.14 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.335426 GCAAGAAACTGAGATTGCAATCTGA 60.335 40.000 39.54 31.93 45.39 3.27
91 93 4.946160 ATTAATGAAGGTGGGGTTCTGA 57.054 40.909 0.00 0.00 0.00 3.27
129 131 3.925299 TCGTTGAACACAAACGAAGTACA 59.075 39.130 8.77 0.00 45.00 2.90
146 148 4.641396 AGTACACAAAGTTGCAGCTATGA 58.359 39.130 2.53 0.00 0.00 2.15
194 196 2.927553 GTCTAAACGACGCCCTAAGA 57.072 50.000 0.00 0.00 32.04 2.10
196 198 2.163211 GTCTAAACGACGCCCTAAGAGT 59.837 50.000 0.00 0.00 32.04 3.24
220 222 4.615201 TGTATATATGGAGGAAGAGGGGGA 59.385 45.833 0.00 0.00 0.00 4.81
224 226 1.298953 TGGAGGAAGAGGGGGAAATG 58.701 55.000 0.00 0.00 0.00 2.32
237 239 0.608035 GGAAATGTCGTGGCCCTTGA 60.608 55.000 0.00 0.00 0.00 3.02
240 242 0.036010 AATGTCGTGGCCCTTGAGAG 60.036 55.000 0.00 0.00 0.00 3.20
298 300 5.467399 CCACACATACGGACTCTAAAAACAA 59.533 40.000 0.00 0.00 0.00 2.83
305 307 9.590451 CATACGGACTCTAAAAACAACCTATAA 57.410 33.333 0.00 0.00 0.00 0.98
355 357 2.884639 GCCCAATAATAAGGTGACGCAT 59.115 45.455 0.00 0.00 0.00 4.73
371 373 4.230657 GACGCATCACTTAGTATAGCCTG 58.769 47.826 0.00 0.00 0.00 4.85
422 424 8.815565 TTGTATATTTTGTCCAAGGCTTCATA 57.184 30.769 0.00 0.00 0.00 2.15
426 428 3.788227 TTGTCCAAGGCTTCATACACT 57.212 42.857 0.00 0.00 0.00 3.55
447 449 3.417101 TCATTATGGTGGCTTCAACGTT 58.583 40.909 0.00 0.00 0.00 3.99
480 482 5.180271 TCACTTGTAACTCCGTTCTTGTTT 58.820 37.500 0.00 0.00 0.00 2.83
484 486 3.135167 TGTAACTCCGTTCTTGTTTCCCT 59.865 43.478 0.00 0.00 0.00 4.20
507 509 1.617322 GCATGCCATCATCTCCATGT 58.383 50.000 6.36 0.00 37.84 3.21
537 539 2.948315 GCTCCAATGTTCATCCTTCTCC 59.052 50.000 0.00 0.00 0.00 3.71
607 609 5.450171 GCAGCATCATATTCTCATGAACAC 58.550 41.667 0.00 0.00 38.39 3.32
610 612 7.041576 GCAGCATCATATTCTCATGAACACTAA 60.042 37.037 0.00 0.00 38.39 2.24
650 653 7.209471 ACGAAAGTACCTGCAATTTAATTGA 57.791 32.000 20.37 5.90 46.88 2.57
691 696 5.567037 ATTGGTCCAGTATATAGCAGCAA 57.433 39.130 0.00 0.00 0.00 3.91
695 700 3.578716 GTCCAGTATATAGCAGCAAGGGA 59.421 47.826 0.00 0.00 0.00 4.20
699 704 5.187772 CCAGTATATAGCAGCAAGGGATGTA 59.812 44.000 0.00 0.00 31.62 2.29
740 746 7.539712 GATGTCCTCATCATTTCGTCTTAAA 57.460 36.000 3.72 0.00 46.78 1.52
741 747 7.921786 ATGTCCTCATCATTTCGTCTTAAAA 57.078 32.000 0.00 0.00 0.00 1.52
742 748 7.737972 TGTCCTCATCATTTCGTCTTAAAAA 57.262 32.000 0.00 0.00 0.00 1.94
804 810 7.186021 ACTAAACGTGAGACACTTATTTTGG 57.814 36.000 4.81 0.00 31.34 3.28
805 811 5.432885 AAACGTGAGACACTTATTTTGGG 57.567 39.130 0.00 0.00 31.34 4.12
806 812 4.345859 ACGTGAGACACTTATTTTGGGA 57.654 40.909 0.00 0.00 31.34 4.37
807 813 4.906618 ACGTGAGACACTTATTTTGGGAT 58.093 39.130 0.00 0.00 31.34 3.85
808 814 4.695455 ACGTGAGACACTTATTTTGGGATG 59.305 41.667 0.00 0.00 31.34 3.51
809 815 4.094887 CGTGAGACACTTATTTTGGGATGG 59.905 45.833 0.00 0.00 31.34 3.51
810 816 4.399303 GTGAGACACTTATTTTGGGATGGG 59.601 45.833 0.00 0.00 0.00 4.00
811 817 4.290985 TGAGACACTTATTTTGGGATGGGA 59.709 41.667 0.00 0.00 0.00 4.37
812 818 5.222233 TGAGACACTTATTTTGGGATGGGAA 60.222 40.000 0.00 0.00 0.00 3.97
813 819 5.264395 AGACACTTATTTTGGGATGGGAAG 58.736 41.667 0.00 0.00 0.00 3.46
814 820 4.352893 ACACTTATTTTGGGATGGGAAGG 58.647 43.478 0.00 0.00 0.00 3.46
815 821 3.706086 CACTTATTTTGGGATGGGAAGGG 59.294 47.826 0.00 0.00 0.00 3.95
816 822 3.308401 CTTATTTTGGGATGGGAAGGGG 58.692 50.000 0.00 0.00 0.00 4.79
817 823 0.343018 ATTTTGGGATGGGAAGGGGG 59.657 55.000 0.00 0.00 0.00 5.40
818 824 2.469563 TTTTGGGATGGGAAGGGGGC 62.470 60.000 0.00 0.00 0.00 5.80
819 825 4.710904 TGGGATGGGAAGGGGGCA 62.711 66.667 0.00 0.00 0.00 5.36
820 826 3.355344 GGGATGGGAAGGGGGCAA 61.355 66.667 0.00 0.00 0.00 4.52
821 827 2.777146 GGATGGGAAGGGGGCAAA 59.223 61.111 0.00 0.00 0.00 3.68
822 828 1.314518 GGATGGGAAGGGGGCAAAT 59.685 57.895 0.00 0.00 0.00 2.32
823 829 0.326522 GGATGGGAAGGGGGCAAATT 60.327 55.000 0.00 0.00 0.00 1.82
824 830 1.062505 GGATGGGAAGGGGGCAAATTA 60.063 52.381 0.00 0.00 0.00 1.40
825 831 2.427741 GGATGGGAAGGGGGCAAATTAT 60.428 50.000 0.00 0.00 0.00 1.28
826 832 2.959421 TGGGAAGGGGGCAAATTATT 57.041 45.000 0.00 0.00 0.00 1.40
827 833 2.476199 TGGGAAGGGGGCAAATTATTG 58.524 47.619 0.00 0.00 39.65 1.90
828 834 1.768275 GGGAAGGGGGCAAATTATTGG 59.232 52.381 0.00 0.00 37.02 3.16
829 835 2.628290 GGGAAGGGGGCAAATTATTGGA 60.628 50.000 0.00 0.00 37.02 3.53
830 836 2.700371 GGAAGGGGGCAAATTATTGGAG 59.300 50.000 0.00 0.00 37.02 3.86
831 837 3.374764 GAAGGGGGCAAATTATTGGAGT 58.625 45.455 0.00 0.00 37.02 3.85
832 838 3.490060 AGGGGGCAAATTATTGGAGTT 57.510 42.857 0.00 0.00 37.02 3.01
833 839 3.106827 AGGGGGCAAATTATTGGAGTTG 58.893 45.455 0.00 0.00 37.02 3.16
834 840 2.837591 GGGGGCAAATTATTGGAGTTGT 59.162 45.455 0.00 0.00 37.02 3.32
835 841 3.263170 GGGGGCAAATTATTGGAGTTGTT 59.737 43.478 0.00 0.00 37.02 2.83
836 842 4.263287 GGGGGCAAATTATTGGAGTTGTTT 60.263 41.667 0.00 0.00 37.02 2.83
837 843 5.046231 GGGGGCAAATTATTGGAGTTGTTTA 60.046 40.000 0.00 0.00 37.02 2.01
838 844 6.106003 GGGGCAAATTATTGGAGTTGTTTAG 58.894 40.000 0.00 0.00 37.02 1.85
839 845 5.580691 GGGCAAATTATTGGAGTTGTTTAGC 59.419 40.000 0.00 0.00 37.02 3.09
840 846 5.580691 GGCAAATTATTGGAGTTGTTTAGCC 59.419 40.000 0.00 0.00 37.02 3.93
841 847 5.580691 GCAAATTATTGGAGTTGTTTAGCCC 59.419 40.000 0.00 0.00 37.02 5.19
842 848 5.932619 AATTATTGGAGTTGTTTAGCCCC 57.067 39.130 0.00 0.00 0.00 5.80
843 849 1.834188 ATTGGAGTTGTTTAGCCCCG 58.166 50.000 0.00 0.00 0.00 5.73
844 850 0.891904 TTGGAGTTGTTTAGCCCCGC 60.892 55.000 0.00 0.00 0.00 6.13
845 851 1.002502 GGAGTTGTTTAGCCCCGCT 60.003 57.895 0.00 0.00 43.41 5.52
846 852 1.025113 GGAGTTGTTTAGCCCCGCTC 61.025 60.000 0.00 0.00 40.44 5.03
847 853 1.359459 GAGTTGTTTAGCCCCGCTCG 61.359 60.000 0.00 0.00 40.44 5.03
848 854 2.744709 TTGTTTAGCCCCGCTCGC 60.745 61.111 0.00 0.00 40.44 5.03
849 855 3.538785 TTGTTTAGCCCCGCTCGCA 62.539 57.895 0.00 0.00 40.44 5.10
850 856 3.497031 GTTTAGCCCCGCTCGCAC 61.497 66.667 0.00 0.00 40.44 5.34
851 857 4.770874 TTTAGCCCCGCTCGCACC 62.771 66.667 0.00 0.00 40.44 5.01
858 864 4.379243 CCGCTCGCACCCTTGTCT 62.379 66.667 0.00 0.00 0.00 3.41
859 865 2.811317 CGCTCGCACCCTTGTCTC 60.811 66.667 0.00 0.00 0.00 3.36
860 866 2.435059 GCTCGCACCCTTGTCTCC 60.435 66.667 0.00 0.00 0.00 3.71
861 867 2.125912 CTCGCACCCTTGTCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
862 868 4.373116 TCGCACCCTTGTCTCCGC 62.373 66.667 0.00 0.00 0.00 5.54
868 874 4.069232 CCTTGTCTCCGCCGCTGA 62.069 66.667 0.00 0.00 0.00 4.26
869 875 2.185350 CTTGTCTCCGCCGCTGAT 59.815 61.111 0.00 0.00 0.00 2.90
870 876 1.448540 CTTGTCTCCGCCGCTGATT 60.449 57.895 0.00 0.00 0.00 2.57
871 877 1.699656 CTTGTCTCCGCCGCTGATTG 61.700 60.000 0.00 0.00 0.00 2.67
872 878 3.567797 GTCTCCGCCGCTGATTGC 61.568 66.667 0.00 0.00 38.57 3.56
873 879 4.081185 TCTCCGCCGCTGATTGCA 62.081 61.111 0.00 0.00 43.06 4.08
874 880 2.898840 CTCCGCCGCTGATTGCAT 60.899 61.111 0.00 0.00 43.06 3.96
875 881 3.177272 CTCCGCCGCTGATTGCATG 62.177 63.158 0.00 0.00 43.06 4.06
876 882 3.204119 CCGCCGCTGATTGCATGA 61.204 61.111 0.00 0.00 43.06 3.07
877 883 2.326897 CGCCGCTGATTGCATGAG 59.673 61.111 0.00 0.00 43.06 2.90
878 884 2.466982 CGCCGCTGATTGCATGAGT 61.467 57.895 0.00 0.00 43.06 3.41
879 885 1.063649 GCCGCTGATTGCATGAGTG 59.936 57.895 0.00 0.00 43.06 3.51
880 886 1.371337 GCCGCTGATTGCATGAGTGA 61.371 55.000 0.00 0.00 43.06 3.41
881 887 1.089112 CCGCTGATTGCATGAGTGAA 58.911 50.000 0.00 0.00 43.06 3.18
882 888 1.674441 CCGCTGATTGCATGAGTGAAT 59.326 47.619 0.00 0.00 43.06 2.57
883 889 2.874086 CCGCTGATTGCATGAGTGAATA 59.126 45.455 0.00 0.00 43.06 1.75
884 890 3.501062 CCGCTGATTGCATGAGTGAATAT 59.499 43.478 0.00 0.00 43.06 1.28
885 891 4.692155 CCGCTGATTGCATGAGTGAATATA 59.308 41.667 0.00 0.00 43.06 0.86
886 892 5.179929 CCGCTGATTGCATGAGTGAATATAA 59.820 40.000 0.00 0.00 43.06 0.98
887 893 6.293571 CCGCTGATTGCATGAGTGAATATAAA 60.294 38.462 0.00 0.00 43.06 1.40
888 894 7.303261 CGCTGATTGCATGAGTGAATATAAAT 58.697 34.615 0.00 0.00 43.06 1.40
889 895 7.270579 CGCTGATTGCATGAGTGAATATAAATG 59.729 37.037 0.00 0.00 43.06 2.32
890 896 8.294577 GCTGATTGCATGAGTGAATATAAATGA 58.705 33.333 0.00 0.00 42.31 2.57
932 938 2.917933 TGGTAGTTCATGTAGCCATGC 58.082 47.619 0.00 0.00 46.64 4.06
933 939 2.222027 GGTAGTTCATGTAGCCATGCC 58.778 52.381 0.00 0.00 46.64 4.40
939 945 1.843206 TCATGTAGCCATGCCCTTACA 59.157 47.619 0.00 0.00 46.64 2.41
940 946 2.158769 TCATGTAGCCATGCCCTTACAG 60.159 50.000 0.00 0.00 46.64 2.74
943 949 0.464036 TAGCCATGCCCTTACAGTCG 59.536 55.000 0.00 0.00 0.00 4.18
945 951 0.177141 GCCATGCCCTTACAGTCGTA 59.823 55.000 0.00 0.00 0.00 3.43
954 960 3.370978 CCCTTACAGTCGTAGCACAAATG 59.629 47.826 0.00 0.00 0.00 2.32
955 961 3.370978 CCTTACAGTCGTAGCACAAATGG 59.629 47.826 0.00 0.00 0.00 3.16
960 966 3.369147 CAGTCGTAGCACAAATGGAGAAG 59.631 47.826 0.00 0.00 0.00 2.85
961 967 3.006967 AGTCGTAGCACAAATGGAGAAGT 59.993 43.478 0.00 0.00 0.00 3.01
964 970 3.617263 CGTAGCACAAATGGAGAAGTACC 59.383 47.826 0.00 0.00 0.00 3.34
1017 1023 2.044946 CCCCCTCGAGCCCTTTTG 60.045 66.667 6.99 0.00 0.00 2.44
1018 1024 2.757077 CCCCTCGAGCCCTTTTGT 59.243 61.111 6.99 0.00 0.00 2.83
1019 1025 1.074951 CCCCTCGAGCCCTTTTGTT 59.925 57.895 6.99 0.00 0.00 2.83
1020 1026 0.539669 CCCCTCGAGCCCTTTTGTTT 60.540 55.000 6.99 0.00 0.00 2.83
1021 1027 1.328279 CCCTCGAGCCCTTTTGTTTT 58.672 50.000 6.99 0.00 0.00 2.43
1022 1028 1.686587 CCCTCGAGCCCTTTTGTTTTT 59.313 47.619 6.99 0.00 0.00 1.94
1050 1057 0.104620 ACCCCAGCCCTAATACCGAT 60.105 55.000 0.00 0.00 0.00 4.18
1060 1067 3.303406 CCTAATACCGATTCGAACCGAC 58.697 50.000 14.99 0.00 34.89 4.79
1081 1088 0.613292 CCCATCTCCGATCCGATCCT 60.613 60.000 2.69 0.00 0.00 3.24
1177 1184 0.250513 GCAACGGGGACTCTGAAGAT 59.749 55.000 0.00 0.00 0.00 2.40
1201 1208 2.827652 GACTTCCCAGTCGATCCAATC 58.172 52.381 0.00 0.00 40.30 2.67
1792 1802 1.303561 GCCCATGCCTGTCAAGACA 60.304 57.895 2.56 2.56 39.32 3.41
2120 2130 1.724582 GCTAAAATCCACGCCGCCAT 61.725 55.000 0.00 0.00 0.00 4.40
2398 2448 5.813672 AGCTGTTTTTCTCGTGTTACTGTTA 59.186 36.000 0.00 0.00 0.00 2.41
2496 2859 3.432252 CCAAATCACAAGTGTAGACGTCC 59.568 47.826 13.01 0.00 0.00 4.79
2497 2860 3.314541 AATCACAAGTGTAGACGTCCC 57.685 47.619 13.01 3.70 0.00 4.46
2498 2861 1.694844 TCACAAGTGTAGACGTCCCA 58.305 50.000 13.01 6.69 0.00 4.37
2499 2862 1.611977 TCACAAGTGTAGACGTCCCAG 59.388 52.381 13.01 0.80 0.00 4.45
2500 2863 0.317479 ACAAGTGTAGACGTCCCAGC 59.683 55.000 13.01 0.59 0.00 4.85
2501 2864 0.317160 CAAGTGTAGACGTCCCAGCA 59.683 55.000 13.01 3.38 0.00 4.41
2502 2865 1.066858 CAAGTGTAGACGTCCCAGCAT 60.067 52.381 13.01 0.00 0.00 3.79
2503 2866 0.532573 AGTGTAGACGTCCCAGCATG 59.467 55.000 13.01 0.00 0.00 4.06
2504 2867 0.530744 GTGTAGACGTCCCAGCATGA 59.469 55.000 13.01 0.00 39.69 3.07
2505 2868 1.067142 GTGTAGACGTCCCAGCATGAA 60.067 52.381 13.01 0.00 39.69 2.57
2506 2869 1.621317 TGTAGACGTCCCAGCATGAAA 59.379 47.619 13.01 0.00 39.69 2.69
2507 2870 2.000447 GTAGACGTCCCAGCATGAAAC 59.000 52.381 13.01 0.00 39.69 2.78
2508 2871 0.321653 AGACGTCCCAGCATGAAACC 60.322 55.000 13.01 0.00 39.69 3.27
2509 2872 0.605319 GACGTCCCAGCATGAAACCA 60.605 55.000 3.51 0.00 39.69 3.67
2510 2873 0.889186 ACGTCCCAGCATGAAACCAC 60.889 55.000 0.00 0.00 39.69 4.16
2511 2874 1.586154 CGTCCCAGCATGAAACCACC 61.586 60.000 0.00 0.00 39.69 4.61
2512 2875 1.303236 TCCCAGCATGAAACCACCG 60.303 57.895 0.00 0.00 39.69 4.94
2513 2876 1.603455 CCCAGCATGAAACCACCGT 60.603 57.895 0.00 0.00 39.69 4.83
2514 2877 1.580942 CCAGCATGAAACCACCGTG 59.419 57.895 0.00 0.00 39.69 4.94
2515 2878 1.172180 CCAGCATGAAACCACCGTGT 61.172 55.000 0.00 0.00 39.69 4.49
2516 2879 0.040157 CAGCATGAAACCACCGTGTG 60.040 55.000 0.00 0.00 39.69 3.82
2517 2880 0.465460 AGCATGAAACCACCGTGTGT 60.465 50.000 0.00 0.00 0.00 3.72
2518 2881 0.317770 GCATGAAACCACCGTGTGTG 60.318 55.000 0.00 0.00 45.01 3.82
2519 2882 0.317770 CATGAAACCACCGTGTGTGC 60.318 55.000 0.00 0.00 44.01 4.57
2520 2883 0.465460 ATGAAACCACCGTGTGTGCT 60.465 50.000 0.00 0.00 44.01 4.40
2521 2884 0.178301 TGAAACCACCGTGTGTGCTA 59.822 50.000 0.00 0.00 44.01 3.49
2522 2885 0.584876 GAAACCACCGTGTGTGCTAC 59.415 55.000 0.00 0.00 44.01 3.58
2523 2886 0.179468 AAACCACCGTGTGTGCTACT 59.821 50.000 0.00 0.00 44.01 2.57
2524 2887 0.531974 AACCACCGTGTGTGCTACTG 60.532 55.000 0.00 0.00 44.01 2.74
2525 2888 2.317609 CCACCGTGTGTGCTACTGC 61.318 63.158 0.00 0.00 44.01 4.40
2526 2889 1.300931 CACCGTGTGTGCTACTGCT 60.301 57.895 0.00 0.00 38.34 4.24
2527 2890 1.300931 ACCGTGTGTGCTACTGCTG 60.301 57.895 0.00 0.00 40.48 4.41
2528 2891 1.006220 CCGTGTGTGCTACTGCTGA 60.006 57.895 0.00 0.00 40.48 4.26
2529 2892 0.390340 CCGTGTGTGCTACTGCTGAT 60.390 55.000 0.00 0.00 40.48 2.90
2530 2893 0.717784 CGTGTGTGCTACTGCTGATG 59.282 55.000 0.00 0.00 40.48 3.07
2531 2894 0.445436 GTGTGTGCTACTGCTGATGC 59.555 55.000 0.00 1.76 40.48 3.91
2551 2964 0.388659 AAAGTTGCAAATCGCCAGCA 59.611 45.000 0.00 0.00 41.33 4.41
2621 3034 3.761657 TCAGCGCAATAATGAAAAGCAG 58.238 40.909 11.47 0.00 0.00 4.24
2704 3117 4.564769 GCGTATAATGATAAGCTGAGGAGC 59.435 45.833 1.00 0.00 46.64 4.70
2712 3125 4.427394 GCTGAGGAGCACATACCG 57.573 61.111 0.00 0.00 45.46 4.02
2713 3126 1.816537 GCTGAGGAGCACATACCGA 59.183 57.895 0.00 0.00 45.46 4.69
2720 3135 2.501723 AGGAGCACATACCGAGACAAAT 59.498 45.455 0.00 0.00 0.00 2.32
2801 3216 8.615225 TTGCTAACAAATATCACCACCTTGGTT 61.615 37.037 0.00 0.00 39.48 3.67
2867 3284 8.594687 CATACAAACTGCATTAAATTGCTAACC 58.405 33.333 2.92 0.00 43.18 2.85
2880 3297 7.658525 AAATTGCTAACCAATATCACATCCA 57.341 32.000 0.00 0.00 43.22 3.41
2902 3319 9.981114 ATCCAATTCAAATTAGAAGACGTTTTT 57.019 25.926 0.00 0.00 0.00 1.94
2920 3337 1.355971 TTTCGAGAGTACGCCAATGC 58.644 50.000 0.00 0.00 0.00 3.56
2921 3338 0.459585 TTCGAGAGTACGCCAATGCC 60.460 55.000 0.00 0.00 0.00 4.40
2922 3339 2.230940 CGAGAGTACGCCAATGCCG 61.231 63.158 0.00 0.00 0.00 5.69
2923 3340 1.153628 GAGAGTACGCCAATGCCGT 60.154 57.895 0.00 0.00 42.26 5.68
2924 3341 0.101759 GAGAGTACGCCAATGCCGTA 59.898 55.000 0.00 0.00 39.88 4.02
2927 3344 2.979649 TACGCCAATGCCGTACCA 59.020 55.556 0.00 0.00 39.88 3.25
2928 3345 1.523046 TACGCCAATGCCGTACCAT 59.477 52.632 0.00 0.00 39.88 3.55
2929 3346 0.751452 TACGCCAATGCCGTACCATA 59.249 50.000 0.00 0.00 39.88 2.74
2930 3347 0.107831 ACGCCAATGCCGTACCATAT 59.892 50.000 0.00 0.00 37.12 1.78
2931 3348 1.234821 CGCCAATGCCGTACCATATT 58.765 50.000 0.00 0.00 0.00 1.28
2932 3349 1.606668 CGCCAATGCCGTACCATATTT 59.393 47.619 0.00 0.00 0.00 1.40
2933 3350 2.034053 CGCCAATGCCGTACCATATTTT 59.966 45.455 0.00 0.00 0.00 1.82
2934 3351 3.490078 CGCCAATGCCGTACCATATTTTT 60.490 43.478 0.00 0.00 0.00 1.94
2935 3352 4.261238 CGCCAATGCCGTACCATATTTTTA 60.261 41.667 0.00 0.00 0.00 1.52
2936 3353 5.563867 CGCCAATGCCGTACCATATTTTTAT 60.564 40.000 0.00 0.00 0.00 1.40
2937 3354 6.348622 CGCCAATGCCGTACCATATTTTTATA 60.349 38.462 0.00 0.00 0.00 0.98
2938 3355 7.543756 GCCAATGCCGTACCATATTTTTATAT 58.456 34.615 0.00 0.00 0.00 0.86
2939 3356 8.679100 GCCAATGCCGTACCATATTTTTATATA 58.321 33.333 0.00 0.00 0.00 0.86
2974 3391 8.438676 AAGTATAATTACAAGAGATGTGTGGC 57.561 34.615 0.00 0.00 43.77 5.01
2975 3392 7.564793 AGTATAATTACAAGAGATGTGTGGCA 58.435 34.615 0.00 0.00 43.77 4.92
2976 3393 6.683974 ATAATTACAAGAGATGTGTGGCAC 57.316 37.500 11.55 11.55 43.77 5.01
2977 3394 3.769739 TTACAAGAGATGTGTGGCACT 57.230 42.857 19.83 0.00 43.77 4.40
2978 3395 4.882842 TTACAAGAGATGTGTGGCACTA 57.117 40.909 19.83 8.40 43.77 2.74
2979 3396 3.325293 ACAAGAGATGTGTGGCACTAG 57.675 47.619 19.83 0.00 41.93 2.57
2980 3397 2.634940 ACAAGAGATGTGTGGCACTAGT 59.365 45.455 19.83 4.01 41.93 2.57
2981 3398 2.998670 CAAGAGATGTGTGGCACTAGTG 59.001 50.000 18.93 18.93 35.11 2.74
2999 3416 2.546321 CGAACACTCAGCGCACAC 59.454 61.111 11.47 0.00 0.00 3.82
3000 3417 2.546321 GAACACTCAGCGCACACG 59.454 61.111 11.47 0.00 44.07 4.49
3001 3418 1.949133 GAACACTCAGCGCACACGA 60.949 57.895 11.47 0.00 43.93 4.35
3002 3419 1.284982 GAACACTCAGCGCACACGAT 61.285 55.000 11.47 0.00 43.93 3.73
3003 3420 0.880278 AACACTCAGCGCACACGATT 60.880 50.000 11.47 0.00 43.93 3.34
3004 3421 0.038618 ACACTCAGCGCACACGATTA 60.039 50.000 11.47 0.00 43.93 1.75
3005 3422 0.366871 CACTCAGCGCACACGATTAC 59.633 55.000 11.47 0.00 43.93 1.89
3006 3423 0.038618 ACTCAGCGCACACGATTACA 60.039 50.000 11.47 0.00 43.93 2.41
3007 3424 0.366871 CTCAGCGCACACGATTACAC 59.633 55.000 11.47 0.00 43.93 2.90
3008 3425 1.011968 TCAGCGCACACGATTACACC 61.012 55.000 11.47 0.00 43.93 4.16
3009 3426 1.740296 AGCGCACACGATTACACCC 60.740 57.895 11.47 0.00 43.93 4.61
3010 3427 2.030401 GCGCACACGATTACACCCA 61.030 57.895 0.30 0.00 43.93 4.51
3011 3428 1.785321 CGCACACGATTACACCCAC 59.215 57.895 0.00 0.00 43.93 4.61
3012 3429 0.946700 CGCACACGATTACACCCACA 60.947 55.000 0.00 0.00 43.93 4.17
3013 3430 0.515564 GCACACGATTACACCCACAC 59.484 55.000 0.00 0.00 0.00 3.82
3014 3431 1.153353 CACACGATTACACCCACACC 58.847 55.000 0.00 0.00 0.00 4.16
3015 3432 0.759959 ACACGATTACACCCACACCA 59.240 50.000 0.00 0.00 0.00 4.17
3016 3433 1.141254 ACACGATTACACCCACACCAA 59.859 47.619 0.00 0.00 0.00 3.67
3017 3434 1.533731 CACGATTACACCCACACCAAC 59.466 52.381 0.00 0.00 0.00 3.77
3018 3435 1.141254 ACGATTACACCCACACCAACA 59.859 47.619 0.00 0.00 0.00 3.33
3019 3436 1.533731 CGATTACACCCACACCAACAC 59.466 52.381 0.00 0.00 0.00 3.32
3020 3437 1.883926 GATTACACCCACACCAACACC 59.116 52.381 0.00 0.00 0.00 4.16
3021 3438 0.624254 TTACACCCACACCAACACCA 59.376 50.000 0.00 0.00 0.00 4.17
3022 3439 0.107116 TACACCCACACCAACACCAC 60.107 55.000 0.00 0.00 0.00 4.16
3023 3440 2.124693 CACCCACACCAACACCACC 61.125 63.158 0.00 0.00 0.00 4.61
3024 3441 2.520741 CCCACACCAACACCACCC 60.521 66.667 0.00 0.00 0.00 4.61
3025 3442 2.277072 CCACACCAACACCACCCA 59.723 61.111 0.00 0.00 0.00 4.51
3026 3443 1.380515 CCACACCAACACCACCCAA 60.381 57.895 0.00 0.00 0.00 4.12
3027 3444 1.391157 CCACACCAACACCACCCAAG 61.391 60.000 0.00 0.00 0.00 3.61
3028 3445 0.395036 CACACCAACACCACCCAAGA 60.395 55.000 0.00 0.00 0.00 3.02
3029 3446 0.106719 ACACCAACACCACCCAAGAG 60.107 55.000 0.00 0.00 0.00 2.85
3030 3447 0.182537 CACCAACACCACCCAAGAGA 59.817 55.000 0.00 0.00 0.00 3.10
3031 3448 0.923358 ACCAACACCACCCAAGAGAA 59.077 50.000 0.00 0.00 0.00 2.87
3032 3449 1.133792 ACCAACACCACCCAAGAGAAG 60.134 52.381 0.00 0.00 0.00 2.85
3033 3450 1.142870 CCAACACCACCCAAGAGAAGA 59.857 52.381 0.00 0.00 0.00 2.87
3034 3451 2.222027 CAACACCACCCAAGAGAAGAC 58.778 52.381 0.00 0.00 0.00 3.01
3035 3452 0.765510 ACACCACCCAAGAGAAGACC 59.234 55.000 0.00 0.00 0.00 3.85
3036 3453 1.059913 CACCACCCAAGAGAAGACCT 58.940 55.000 0.00 0.00 0.00 3.85
3037 3454 2.257207 CACCACCCAAGAGAAGACCTA 58.743 52.381 0.00 0.00 0.00 3.08
3038 3455 2.234908 CACCACCCAAGAGAAGACCTAG 59.765 54.545 0.00 0.00 0.00 3.02
3039 3456 2.111972 ACCACCCAAGAGAAGACCTAGA 59.888 50.000 0.00 0.00 0.00 2.43
3040 3457 2.498078 CCACCCAAGAGAAGACCTAGAC 59.502 54.545 0.00 0.00 0.00 2.59
3041 3458 3.436243 CACCCAAGAGAAGACCTAGACT 58.564 50.000 0.00 0.00 0.00 3.24
3042 3459 4.570079 CCACCCAAGAGAAGACCTAGACTA 60.570 50.000 0.00 0.00 0.00 2.59
3043 3460 5.017490 CACCCAAGAGAAGACCTAGACTAA 58.983 45.833 0.00 0.00 0.00 2.24
3044 3461 5.659079 CACCCAAGAGAAGACCTAGACTAAT 59.341 44.000 0.00 0.00 0.00 1.73
3045 3462 6.155393 CACCCAAGAGAAGACCTAGACTAATT 59.845 42.308 0.00 0.00 0.00 1.40
3046 3463 6.381707 ACCCAAGAGAAGACCTAGACTAATTC 59.618 42.308 0.00 0.00 0.00 2.17
3047 3464 6.183360 CCCAAGAGAAGACCTAGACTAATTCC 60.183 46.154 0.00 0.00 0.00 3.01
3048 3465 6.609616 CCAAGAGAAGACCTAGACTAATTCCT 59.390 42.308 0.00 0.00 0.00 3.36
3049 3466 7.201875 CCAAGAGAAGACCTAGACTAATTCCTC 60.202 44.444 0.00 0.00 0.00 3.71
3050 3467 6.975949 AGAGAAGACCTAGACTAATTCCTCA 58.024 40.000 0.00 0.00 0.00 3.86
3051 3468 6.831868 AGAGAAGACCTAGACTAATTCCTCAC 59.168 42.308 0.00 0.00 0.00 3.51
3052 3469 6.494952 AGAAGACCTAGACTAATTCCTCACA 58.505 40.000 0.00 0.00 0.00 3.58
3053 3470 6.954684 AGAAGACCTAGACTAATTCCTCACAA 59.045 38.462 0.00 0.00 0.00 3.33
3054 3471 7.455008 AGAAGACCTAGACTAATTCCTCACAAA 59.545 37.037 0.00 0.00 0.00 2.83
3055 3472 7.554959 AGACCTAGACTAATTCCTCACAAAA 57.445 36.000 0.00 0.00 0.00 2.44
3056 3473 7.387643 AGACCTAGACTAATTCCTCACAAAAC 58.612 38.462 0.00 0.00 0.00 2.43
3057 3474 6.164176 ACCTAGACTAATTCCTCACAAAACG 58.836 40.000 0.00 0.00 0.00 3.60
3058 3475 6.164176 CCTAGACTAATTCCTCACAAAACGT 58.836 40.000 0.00 0.00 0.00 3.99
3059 3476 6.649557 CCTAGACTAATTCCTCACAAAACGTT 59.350 38.462 0.00 0.00 0.00 3.99
3060 3477 6.300354 AGACTAATTCCTCACAAAACGTTG 57.700 37.500 0.00 0.00 40.84 4.10
3062 3479 6.987992 AGACTAATTCCTCACAAAACGTTGTA 59.012 34.615 0.00 0.00 46.47 2.41
3063 3480 7.170998 AGACTAATTCCTCACAAAACGTTGTAG 59.829 37.037 0.00 0.00 46.47 2.74
3064 3481 6.764560 ACTAATTCCTCACAAAACGTTGTAGT 59.235 34.615 0.00 0.00 46.47 2.73
3065 3482 5.668558 ATTCCTCACAAAACGTTGTAGTC 57.331 39.130 0.00 0.00 46.47 2.59
3066 3483 3.460103 TCCTCACAAAACGTTGTAGTCC 58.540 45.455 0.00 0.00 46.47 3.85
3067 3484 3.133362 TCCTCACAAAACGTTGTAGTCCT 59.867 43.478 0.00 0.00 46.47 3.85
3068 3485 3.493503 CCTCACAAAACGTTGTAGTCCTC 59.506 47.826 0.00 0.00 46.47 3.71
3069 3486 3.460103 TCACAAAACGTTGTAGTCCTCC 58.540 45.455 0.00 0.00 46.47 4.30
3070 3487 3.118702 TCACAAAACGTTGTAGTCCTCCA 60.119 43.478 0.00 0.00 46.47 3.86
3071 3488 3.623960 CACAAAACGTTGTAGTCCTCCAA 59.376 43.478 0.00 0.00 46.47 3.53
3072 3489 3.624410 ACAAAACGTTGTAGTCCTCCAAC 59.376 43.478 0.00 0.00 46.33 3.77
3073 3490 3.547054 AAACGTTGTAGTCCTCCAACA 57.453 42.857 0.00 0.00 40.71 3.33
3074 3491 2.521105 ACGTTGTAGTCCTCCAACAC 57.479 50.000 4.05 0.00 40.71 3.32
3075 3492 1.069668 ACGTTGTAGTCCTCCAACACC 59.930 52.381 4.05 0.00 40.71 4.16
3076 3493 1.792006 GTTGTAGTCCTCCAACACCG 58.208 55.000 0.00 0.00 40.46 4.94
3077 3494 0.034337 TTGTAGTCCTCCAACACCGC 59.966 55.000 0.00 0.00 0.00 5.68
3078 3495 1.079336 GTAGTCCTCCAACACCGCC 60.079 63.158 0.00 0.00 0.00 6.13
3079 3496 1.229082 TAGTCCTCCAACACCGCCT 60.229 57.895 0.00 0.00 0.00 5.52
3080 3497 0.040058 TAGTCCTCCAACACCGCCTA 59.960 55.000 0.00 0.00 0.00 3.93
3081 3498 1.079336 GTCCTCCAACACCGCCTAC 60.079 63.158 0.00 0.00 0.00 3.18
3082 3499 2.267961 CCTCCAACACCGCCTACC 59.732 66.667 0.00 0.00 0.00 3.18
3083 3500 2.125673 CTCCAACACCGCCTACCG 60.126 66.667 0.00 0.00 0.00 4.02
3084 3501 4.382320 TCCAACACCGCCTACCGC 62.382 66.667 0.00 0.00 35.03 5.68
3085 3502 4.388499 CCAACACCGCCTACCGCT 62.388 66.667 0.00 0.00 35.03 5.52
3086 3503 2.358247 CAACACCGCCTACCGCTT 60.358 61.111 0.00 0.00 35.03 4.68
3087 3504 2.358247 AACACCGCCTACCGCTTG 60.358 61.111 0.00 0.00 35.03 4.01
3088 3505 3.894547 AACACCGCCTACCGCTTGG 62.895 63.158 0.00 0.00 39.35 3.61
3094 3511 3.809013 CCTACCGCTTGGCCCCAT 61.809 66.667 0.00 0.00 35.53 4.00
3095 3512 2.275418 CTACCGCTTGGCCCCATT 59.725 61.111 0.00 0.00 35.53 3.16
3096 3513 1.823899 CTACCGCTTGGCCCCATTC 60.824 63.158 0.00 0.00 35.53 2.67
3097 3514 2.270874 CTACCGCTTGGCCCCATTCT 62.271 60.000 0.00 0.00 35.53 2.40
3098 3515 2.550699 TACCGCTTGGCCCCATTCTG 62.551 60.000 0.00 0.00 35.53 3.02
3099 3516 3.830192 CGCTTGGCCCCATTCTGC 61.830 66.667 0.00 0.00 0.00 4.26
3100 3517 2.363406 GCTTGGCCCCATTCTGCT 60.363 61.111 0.00 0.00 0.00 4.24
3101 3518 1.076777 GCTTGGCCCCATTCTGCTA 60.077 57.895 0.00 0.00 0.00 3.49
3102 3519 1.387295 GCTTGGCCCCATTCTGCTAC 61.387 60.000 0.00 0.00 0.00 3.58
3103 3520 0.753111 CTTGGCCCCATTCTGCTACC 60.753 60.000 0.00 0.00 0.00 3.18
3104 3521 1.214305 TTGGCCCCATTCTGCTACCT 61.214 55.000 0.00 0.00 0.00 3.08
3105 3522 1.149401 GGCCCCATTCTGCTACCTC 59.851 63.158 0.00 0.00 0.00 3.85
3106 3523 1.635817 GGCCCCATTCTGCTACCTCA 61.636 60.000 0.00 0.00 0.00 3.86
3107 3524 0.255890 GCCCCATTCTGCTACCTCAA 59.744 55.000 0.00 0.00 0.00 3.02
3108 3525 1.748591 GCCCCATTCTGCTACCTCAAG 60.749 57.143 0.00 0.00 0.00 3.02
3109 3526 1.561542 CCCCATTCTGCTACCTCAAGT 59.438 52.381 0.00 0.00 0.00 3.16
3110 3527 2.771943 CCCCATTCTGCTACCTCAAGTA 59.228 50.000 0.00 0.00 0.00 2.24
3122 3539 6.570672 CTACCTCAAGTAGTGTACAAGTGA 57.429 41.667 0.00 0.00 43.12 3.41
3123 3540 5.197682 ACCTCAAGTAGTGTACAAGTGAC 57.802 43.478 0.00 0.00 0.00 3.67
3124 3541 4.227538 CCTCAAGTAGTGTACAAGTGACG 58.772 47.826 0.00 0.00 0.00 4.35
3125 3542 4.023450 CCTCAAGTAGTGTACAAGTGACGA 60.023 45.833 0.00 0.00 0.00 4.20
3126 3543 5.104562 TCAAGTAGTGTACAAGTGACGAG 57.895 43.478 0.00 0.00 0.00 4.18
3127 3544 3.555917 AGTAGTGTACAAGTGACGAGC 57.444 47.619 0.00 0.00 0.00 5.03
3128 3545 3.147629 AGTAGTGTACAAGTGACGAGCT 58.852 45.455 0.00 0.00 0.00 4.09
3129 3546 3.568853 AGTAGTGTACAAGTGACGAGCTT 59.431 43.478 0.00 0.00 0.00 3.74
3130 3547 3.014604 AGTGTACAAGTGACGAGCTTC 57.985 47.619 0.00 0.00 0.00 3.86
3131 3548 1.714460 GTGTACAAGTGACGAGCTTCG 59.286 52.381 0.00 0.00 46.93 3.79
3132 3549 1.605232 TGTACAAGTGACGAGCTTCGA 59.395 47.619 11.64 0.00 43.74 3.71
3133 3550 2.228103 TGTACAAGTGACGAGCTTCGAT 59.772 45.455 11.64 0.00 43.74 3.59
3134 3551 1.702886 ACAAGTGACGAGCTTCGATG 58.297 50.000 11.64 0.00 43.74 3.84
3135 3552 0.994995 CAAGTGACGAGCTTCGATGG 59.005 55.000 11.64 0.00 43.74 3.51
3136 3553 0.603569 AAGTGACGAGCTTCGATGGT 59.396 50.000 11.64 2.26 43.74 3.55
3137 3554 0.109086 AGTGACGAGCTTCGATGGTG 60.109 55.000 7.83 3.55 43.74 4.17
3138 3555 0.388649 GTGACGAGCTTCGATGGTGT 60.389 55.000 7.83 6.53 43.74 4.16
3139 3556 0.317160 TGACGAGCTTCGATGGTGTT 59.683 50.000 7.83 0.00 43.74 3.32
3140 3557 0.992802 GACGAGCTTCGATGGTGTTC 59.007 55.000 7.83 0.57 43.74 3.18
3141 3558 0.603569 ACGAGCTTCGATGGTGTTCT 59.396 50.000 7.83 0.00 43.74 3.01
3142 3559 1.000955 ACGAGCTTCGATGGTGTTCTT 59.999 47.619 7.83 0.00 43.74 2.52
3143 3560 2.069273 CGAGCTTCGATGGTGTTCTTT 58.931 47.619 7.83 0.00 43.74 2.52
3144 3561 2.159787 CGAGCTTCGATGGTGTTCTTTG 60.160 50.000 7.83 0.00 43.74 2.77
3145 3562 2.808543 GAGCTTCGATGGTGTTCTTTGT 59.191 45.455 7.83 0.00 0.00 2.83
3146 3563 3.214328 AGCTTCGATGGTGTTCTTTGTT 58.786 40.909 1.79 0.00 0.00 2.83
3147 3564 3.003689 AGCTTCGATGGTGTTCTTTGTTG 59.996 43.478 1.79 0.00 0.00 3.33
3148 3565 3.003275 GCTTCGATGGTGTTCTTTGTTGA 59.997 43.478 0.00 0.00 0.00 3.18
3149 3566 4.320494 GCTTCGATGGTGTTCTTTGTTGAT 60.320 41.667 0.00 0.00 0.00 2.57
3150 3567 5.356882 TTCGATGGTGTTCTTTGTTGATC 57.643 39.130 0.00 0.00 0.00 2.92
3151 3568 3.751175 TCGATGGTGTTCTTTGTTGATCC 59.249 43.478 0.00 0.00 0.00 3.36
3152 3569 3.501828 CGATGGTGTTCTTTGTTGATCCA 59.498 43.478 0.00 0.00 0.00 3.41
3153 3570 4.023279 CGATGGTGTTCTTTGTTGATCCAA 60.023 41.667 0.00 0.00 0.00 3.53
3154 3571 4.647424 TGGTGTTCTTTGTTGATCCAAC 57.353 40.909 3.10 3.10 43.78 3.77
3155 3572 3.383185 TGGTGTTCTTTGTTGATCCAACC 59.617 43.478 7.29 0.00 42.96 3.77
3156 3573 3.636764 GGTGTTCTTTGTTGATCCAACCT 59.363 43.478 7.29 0.00 42.96 3.50
3157 3574 4.825085 GGTGTTCTTTGTTGATCCAACCTA 59.175 41.667 7.29 0.00 42.96 3.08
3158 3575 5.476945 GGTGTTCTTTGTTGATCCAACCTAT 59.523 40.000 7.29 0.00 42.96 2.57
3159 3576 6.015434 GGTGTTCTTTGTTGATCCAACCTATT 60.015 38.462 7.29 0.00 42.96 1.73
3160 3577 6.863126 GTGTTCTTTGTTGATCCAACCTATTG 59.137 38.462 7.29 0.00 42.96 1.90
3161 3578 6.775142 TGTTCTTTGTTGATCCAACCTATTGA 59.225 34.615 7.29 0.00 42.96 2.57
3162 3579 7.286546 TGTTCTTTGTTGATCCAACCTATTGAA 59.713 33.333 7.29 3.31 42.96 2.69
3163 3580 7.831691 TCTTTGTTGATCCAACCTATTGAAA 57.168 32.000 7.29 0.62 42.96 2.69
3164 3581 8.243961 TCTTTGTTGATCCAACCTATTGAAAA 57.756 30.769 7.29 0.04 42.96 2.29
3165 3582 8.141268 TCTTTGTTGATCCAACCTATTGAAAAC 58.859 33.333 7.29 0.00 42.96 2.43
3166 3583 6.339587 TGTTGATCCAACCTATTGAAAACC 57.660 37.500 7.29 0.00 42.96 3.27
3167 3584 5.245075 TGTTGATCCAACCTATTGAAAACCC 59.755 40.000 7.29 0.00 42.96 4.11
3168 3585 5.269554 TGATCCAACCTATTGAAAACCCT 57.730 39.130 0.00 0.00 38.15 4.34
3169 3586 5.261216 TGATCCAACCTATTGAAAACCCTC 58.739 41.667 0.00 0.00 38.15 4.30
3170 3587 3.681593 TCCAACCTATTGAAAACCCTCG 58.318 45.455 0.00 0.00 38.15 4.63
3171 3588 2.752903 CCAACCTATTGAAAACCCTCGG 59.247 50.000 0.00 0.00 38.15 4.63
3172 3589 2.752903 CAACCTATTGAAAACCCTCGGG 59.247 50.000 0.00 0.00 38.15 5.14
3173 3590 3.812882 CAACCTATTGAAAACCCTCGGGT 60.813 47.826 0.65 0.65 44.00 5.28
3175 3592 7.058449 CAACCTATTGAAAACCCTCGGGTTC 62.058 48.000 20.06 10.01 46.84 3.62
3182 3599 2.685380 CCCTCGGGTTCCTCTGCT 60.685 66.667 0.00 0.00 0.00 4.24
3183 3600 2.294078 CCCTCGGGTTCCTCTGCTT 61.294 63.158 0.00 0.00 0.00 3.91
3184 3601 1.219393 CCTCGGGTTCCTCTGCTTC 59.781 63.158 0.00 0.00 0.00 3.86
3185 3602 1.219393 CTCGGGTTCCTCTGCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
3186 3603 1.535444 TCGGGTTCCTCTGCTTCCA 60.535 57.895 0.00 0.00 0.00 3.53
3187 3604 1.376037 CGGGTTCCTCTGCTTCCAC 60.376 63.158 0.00 0.00 0.00 4.02
3188 3605 1.761174 GGGTTCCTCTGCTTCCACA 59.239 57.895 0.00 0.00 0.00 4.17
3189 3606 0.110486 GGGTTCCTCTGCTTCCACAA 59.890 55.000 0.00 0.00 0.00 3.33
3190 3607 1.272147 GGGTTCCTCTGCTTCCACAAT 60.272 52.381 0.00 0.00 0.00 2.71
3191 3608 1.815003 GGTTCCTCTGCTTCCACAATG 59.185 52.381 0.00 0.00 0.00 2.82
3192 3609 1.200948 GTTCCTCTGCTTCCACAATGC 59.799 52.381 0.00 0.00 0.00 3.56
3193 3610 0.322816 TCCTCTGCTTCCACAATGCC 60.323 55.000 0.00 0.00 0.00 4.40
3194 3611 1.318158 CCTCTGCTTCCACAATGCCC 61.318 60.000 0.00 0.00 0.00 5.36
3195 3612 0.609957 CTCTGCTTCCACAATGCCCA 60.610 55.000 0.00 0.00 0.00 5.36
3196 3613 0.178967 TCTGCTTCCACAATGCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
3197 3614 0.680618 CTGCTTCCACAATGCCCAAA 59.319 50.000 0.00 0.00 0.00 3.28
3198 3615 0.680618 TGCTTCCACAATGCCCAAAG 59.319 50.000 0.00 0.00 0.00 2.77
3199 3616 0.037046 GCTTCCACAATGCCCAAAGG 60.037 55.000 0.00 0.00 0.00 3.11
3200 3617 1.631405 CTTCCACAATGCCCAAAGGA 58.369 50.000 0.00 0.00 33.47 3.36
3201 3618 1.273327 CTTCCACAATGCCCAAAGGAC 59.727 52.381 0.00 0.00 33.47 3.85
3202 3619 0.482446 TCCACAATGCCCAAAGGACT 59.518 50.000 0.00 0.00 33.47 3.85
3203 3620 0.604578 CCACAATGCCCAAAGGACTG 59.395 55.000 0.00 0.00 33.47 3.51
3204 3621 0.037975 CACAATGCCCAAAGGACTGC 60.038 55.000 0.00 0.00 33.47 4.40
3205 3622 0.469705 ACAATGCCCAAAGGACTGCA 60.470 50.000 0.00 0.00 38.23 4.41
3206 3623 0.245539 CAATGCCCAAAGGACTGCAG 59.754 55.000 13.48 13.48 37.12 4.41
3207 3624 0.178953 AATGCCCAAAGGACTGCAGT 60.179 50.000 21.88 21.88 37.12 4.40
3208 3625 0.896940 ATGCCCAAAGGACTGCAGTG 60.897 55.000 27.27 9.39 37.12 3.66
3209 3626 1.228245 GCCCAAAGGACTGCAGTGA 60.228 57.895 27.27 0.00 33.47 3.41
3210 3627 1.518903 GCCCAAAGGACTGCAGTGAC 61.519 60.000 27.27 17.00 33.47 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 6.439375 ACCCCACCTTCATTAATAAGTTTTCC 59.561 38.462 0.00 0.00 0.00 3.13
73 75 2.040412 GTCTCAGAACCCCACCTTCATT 59.960 50.000 0.00 0.00 0.00 2.57
76 78 0.037232 CGTCTCAGAACCCCACCTTC 60.037 60.000 0.00 0.00 0.00 3.46
129 131 2.766313 TCGTCATAGCTGCAACTTTGT 58.234 42.857 1.02 0.00 0.00 2.83
146 148 8.468399 TGGGTTTTGTTTAGATTAAAAGTTCGT 58.532 29.630 0.00 0.00 0.00 3.85
194 196 6.026186 CCCCTCTTCCTCCATATATACAACT 58.974 44.000 0.00 0.00 0.00 3.16
196 198 5.078715 TCCCCCTCTTCCTCCATATATACAA 59.921 44.000 0.00 0.00 0.00 2.41
220 222 0.400213 TCTCAAGGGCCACGACATTT 59.600 50.000 6.18 0.00 0.00 2.32
224 226 1.216710 CTCTCTCAAGGGCCACGAC 59.783 63.158 6.18 0.00 0.00 4.34
237 239 4.131932 GGTTTCGGACCCCTCTCT 57.868 61.111 0.00 0.00 43.06 3.10
262 264 3.751518 GTATGTGTGGGGAAACAAGAGT 58.248 45.455 0.00 0.00 0.00 3.24
316 318 2.733956 GGCCAGACCCATGTAATTTCA 58.266 47.619 0.00 0.00 0.00 2.69
330 332 3.433031 CGTCACCTTATTATTGGGCCAGA 60.433 47.826 6.23 0.00 0.00 3.86
355 357 3.630769 CGTCCACAGGCTATACTAAGTGA 59.369 47.826 0.91 0.00 0.00 3.41
359 361 5.664294 TTTTCGTCCACAGGCTATACTAA 57.336 39.130 0.00 0.00 0.00 2.24
363 365 6.822442 TCATAATTTTCGTCCACAGGCTATA 58.178 36.000 0.00 0.00 0.00 1.31
371 373 6.417191 TGCTACTTCATAATTTTCGTCCAC 57.583 37.500 0.00 0.00 0.00 4.02
422 424 3.719268 TGAAGCCACCATAATGAGTGT 57.281 42.857 0.00 0.00 31.88 3.55
426 428 3.066291 ACGTTGAAGCCACCATAATGA 57.934 42.857 0.00 0.00 0.00 2.57
447 449 5.869344 CGGAGTTACAAGTGATGATTTCAGA 59.131 40.000 0.00 0.00 34.17 3.27
480 482 2.829914 GATGGCATGCGCAAGGGA 60.830 61.111 17.11 0.00 41.24 4.20
484 486 1.449726 GGAGATGATGGCATGCGCAA 61.450 55.000 17.11 0.00 41.24 4.85
507 509 4.998671 TGAACATTGGAGCAAGAACAAA 57.001 36.364 0.00 0.00 0.00 2.83
537 539 2.450476 ACAAATGAAGGGCCTAGCTTG 58.550 47.619 6.41 11.03 0.00 4.01
607 609 9.893305 ACTTTCGTTTCTTGGTAATGATTTTAG 57.107 29.630 0.00 0.00 0.00 1.85
610 612 8.294577 GGTACTTTCGTTTCTTGGTAATGATTT 58.705 33.333 0.00 0.00 0.00 2.17
639 641 3.297979 GCTCGCACACGTCAATTAAATTG 59.702 43.478 0.00 0.00 41.18 2.32
650 653 1.162698 TTACTAGAGCTCGCACACGT 58.837 50.000 8.37 3.27 41.18 4.49
691 696 6.824958 ATACATTGTTACACCTACATCCCT 57.175 37.500 0.00 0.00 0.00 4.20
695 700 9.109393 GACATCAATACATTGTTACACCTACAT 57.891 33.333 0.00 0.00 38.84 2.29
699 704 6.721318 AGGACATCAATACATTGTTACACCT 58.279 36.000 0.00 0.00 38.84 4.00
778 784 8.932791 CCAAAATAAGTGTCTCACGTTTAGTAT 58.067 33.333 0.00 0.00 39.64 2.12
779 785 7.385752 CCCAAAATAAGTGTCTCACGTTTAGTA 59.614 37.037 0.00 0.00 39.64 1.82
780 786 6.204108 CCCAAAATAAGTGTCTCACGTTTAGT 59.796 38.462 0.00 0.00 39.64 2.24
781 787 6.425721 TCCCAAAATAAGTGTCTCACGTTTAG 59.574 38.462 0.00 0.00 39.64 1.85
782 788 6.289834 TCCCAAAATAAGTGTCTCACGTTTA 58.710 36.000 0.00 0.00 39.64 2.01
783 789 5.127491 TCCCAAAATAAGTGTCTCACGTTT 58.873 37.500 0.00 0.00 39.64 3.60
784 790 4.710324 TCCCAAAATAAGTGTCTCACGTT 58.290 39.130 0.00 0.00 39.64 3.99
785 791 4.345859 TCCCAAAATAAGTGTCTCACGT 57.654 40.909 0.00 0.00 39.64 4.49
786 792 4.094887 CCATCCCAAAATAAGTGTCTCACG 59.905 45.833 0.00 0.00 39.64 4.35
787 793 4.399303 CCCATCCCAAAATAAGTGTCTCAC 59.601 45.833 0.00 0.00 34.10 3.51
788 794 4.290985 TCCCATCCCAAAATAAGTGTCTCA 59.709 41.667 0.00 0.00 0.00 3.27
789 795 4.855340 TCCCATCCCAAAATAAGTGTCTC 58.145 43.478 0.00 0.00 0.00 3.36
790 796 4.946160 TCCCATCCCAAAATAAGTGTCT 57.054 40.909 0.00 0.00 0.00 3.41
791 797 4.402474 CCTTCCCATCCCAAAATAAGTGTC 59.598 45.833 0.00 0.00 0.00 3.67
792 798 4.352893 CCTTCCCATCCCAAAATAAGTGT 58.647 43.478 0.00 0.00 0.00 3.55
793 799 3.706086 CCCTTCCCATCCCAAAATAAGTG 59.294 47.826 0.00 0.00 0.00 3.16
794 800 3.310583 CCCCTTCCCATCCCAAAATAAGT 60.311 47.826 0.00 0.00 0.00 2.24
795 801 3.308401 CCCCTTCCCATCCCAAAATAAG 58.692 50.000 0.00 0.00 0.00 1.73
796 802 2.022527 CCCCCTTCCCATCCCAAAATAA 60.023 50.000 0.00 0.00 0.00 1.40
797 803 1.578215 CCCCCTTCCCATCCCAAAATA 59.422 52.381 0.00 0.00 0.00 1.40
798 804 0.343018 CCCCCTTCCCATCCCAAAAT 59.657 55.000 0.00 0.00 0.00 1.82
799 805 1.787112 CCCCCTTCCCATCCCAAAA 59.213 57.895 0.00 0.00 0.00 2.44
800 806 2.942200 GCCCCCTTCCCATCCCAAA 61.942 63.158 0.00 0.00 0.00 3.28
801 807 3.355344 GCCCCCTTCCCATCCCAA 61.355 66.667 0.00 0.00 0.00 4.12
802 808 4.710904 TGCCCCCTTCCCATCCCA 62.711 66.667 0.00 0.00 0.00 4.37
803 809 2.256156 ATTTGCCCCCTTCCCATCCC 62.256 60.000 0.00 0.00 0.00 3.85
804 810 0.326522 AATTTGCCCCCTTCCCATCC 60.327 55.000 0.00 0.00 0.00 3.51
805 811 2.470057 TAATTTGCCCCCTTCCCATC 57.530 50.000 0.00 0.00 0.00 3.51
806 812 3.047857 CAATAATTTGCCCCCTTCCCAT 58.952 45.455 0.00 0.00 0.00 4.00
807 813 2.476199 CAATAATTTGCCCCCTTCCCA 58.524 47.619 0.00 0.00 0.00 4.37
808 814 1.768275 CCAATAATTTGCCCCCTTCCC 59.232 52.381 0.00 0.00 0.00 3.97
809 815 2.700371 CTCCAATAATTTGCCCCCTTCC 59.300 50.000 0.00 0.00 0.00 3.46
810 816 3.374764 ACTCCAATAATTTGCCCCCTTC 58.625 45.455 0.00 0.00 0.00 3.46
811 817 3.490060 ACTCCAATAATTTGCCCCCTT 57.510 42.857 0.00 0.00 0.00 3.95
812 818 3.106827 CAACTCCAATAATTTGCCCCCT 58.893 45.455 0.00 0.00 0.00 4.79
813 819 2.837591 ACAACTCCAATAATTTGCCCCC 59.162 45.455 0.00 0.00 0.00 5.40
814 820 4.551702 AACAACTCCAATAATTTGCCCC 57.448 40.909 0.00 0.00 0.00 5.80
815 821 5.580691 GCTAAACAACTCCAATAATTTGCCC 59.419 40.000 0.00 0.00 0.00 5.36
816 822 5.580691 GGCTAAACAACTCCAATAATTTGCC 59.419 40.000 0.00 0.00 0.00 4.52
817 823 5.580691 GGGCTAAACAACTCCAATAATTTGC 59.419 40.000 0.00 0.00 0.00 3.68
818 824 6.106003 GGGGCTAAACAACTCCAATAATTTG 58.894 40.000 0.00 0.00 0.00 2.32
819 825 5.105513 CGGGGCTAAACAACTCCAATAATTT 60.106 40.000 0.00 0.00 0.00 1.82
820 826 4.401202 CGGGGCTAAACAACTCCAATAATT 59.599 41.667 0.00 0.00 0.00 1.40
821 827 3.951680 CGGGGCTAAACAACTCCAATAAT 59.048 43.478 0.00 0.00 0.00 1.28
822 828 3.349022 CGGGGCTAAACAACTCCAATAA 58.651 45.455 0.00 0.00 0.00 1.40
823 829 2.942306 GCGGGGCTAAACAACTCCAATA 60.942 50.000 0.00 0.00 0.00 1.90
824 830 1.834188 CGGGGCTAAACAACTCCAAT 58.166 50.000 0.00 0.00 0.00 3.16
825 831 0.891904 GCGGGGCTAAACAACTCCAA 60.892 55.000 0.00 0.00 0.00 3.53
826 832 1.302993 GCGGGGCTAAACAACTCCA 60.303 57.895 0.00 0.00 0.00 3.86
827 833 1.002502 AGCGGGGCTAAACAACTCC 60.003 57.895 0.00 0.00 36.99 3.85
828 834 1.359459 CGAGCGGGGCTAAACAACTC 61.359 60.000 0.00 0.00 39.88 3.01
829 835 1.375523 CGAGCGGGGCTAAACAACT 60.376 57.895 0.00 0.00 39.88 3.16
830 836 3.035576 GCGAGCGGGGCTAAACAAC 62.036 63.158 0.00 0.00 39.88 3.32
831 837 2.744709 GCGAGCGGGGCTAAACAA 60.745 61.111 0.00 0.00 39.88 2.83
832 838 4.010224 TGCGAGCGGGGCTAAACA 62.010 61.111 0.00 0.00 39.88 2.83
833 839 3.497031 GTGCGAGCGGGGCTAAAC 61.497 66.667 0.00 0.00 39.88 2.01
834 840 4.770874 GGTGCGAGCGGGGCTAAA 62.771 66.667 0.00 0.00 39.88 1.85
841 847 4.379243 AGACAAGGGTGCGAGCGG 62.379 66.667 0.00 0.00 0.00 5.52
842 848 2.811317 GAGACAAGGGTGCGAGCG 60.811 66.667 0.00 0.00 0.00 5.03
843 849 2.435059 GGAGACAAGGGTGCGAGC 60.435 66.667 0.00 0.00 0.00 5.03
844 850 2.125912 CGGAGACAAGGGTGCGAG 60.126 66.667 0.00 0.00 0.00 5.03
845 851 4.373116 GCGGAGACAAGGGTGCGA 62.373 66.667 0.00 0.00 0.00 5.10
851 857 2.859273 AATCAGCGGCGGAGACAAGG 62.859 60.000 9.78 0.00 27.25 3.61
852 858 1.448540 AATCAGCGGCGGAGACAAG 60.449 57.895 9.78 0.00 27.25 3.16
853 859 1.741401 CAATCAGCGGCGGAGACAA 60.741 57.895 9.78 0.00 27.25 3.18
854 860 2.125552 CAATCAGCGGCGGAGACA 60.126 61.111 9.78 0.00 27.25 3.41
855 861 3.567797 GCAATCAGCGGCGGAGAC 61.568 66.667 9.78 0.00 0.00 3.36
864 870 8.294577 TCATTTATATTCACTCATGCAATCAGC 58.705 33.333 0.00 0.00 45.96 4.26
921 927 1.846439 ACTGTAAGGGCATGGCTACAT 59.154 47.619 19.78 8.11 39.30 2.29
922 928 1.209504 GACTGTAAGGGCATGGCTACA 59.790 52.381 19.78 18.17 39.30 2.74
923 929 1.806623 CGACTGTAAGGGCATGGCTAC 60.807 57.143 19.78 14.60 39.30 3.58
924 930 0.464036 CGACTGTAAGGGCATGGCTA 59.536 55.000 19.78 1.28 39.30 3.93
925 931 1.221840 CGACTGTAAGGGCATGGCT 59.778 57.895 19.78 2.39 39.30 4.75
926 932 0.177141 TACGACTGTAAGGGCATGGC 59.823 55.000 11.56 11.56 39.30 4.40
927 933 1.806623 GCTACGACTGTAAGGGCATGG 60.807 57.143 0.00 0.00 39.30 3.66
928 934 1.134818 TGCTACGACTGTAAGGGCATG 60.135 52.381 0.00 0.00 39.30 4.06
929 935 1.134788 GTGCTACGACTGTAAGGGCAT 60.135 52.381 0.00 0.00 39.30 4.40
930 936 0.245539 GTGCTACGACTGTAAGGGCA 59.754 55.000 0.00 0.00 39.30 5.36
931 937 0.245539 TGTGCTACGACTGTAAGGGC 59.754 55.000 0.00 0.00 39.30 5.19
932 938 2.736144 TTGTGCTACGACTGTAAGGG 57.264 50.000 0.00 0.00 39.30 3.95
933 939 3.370978 CCATTTGTGCTACGACTGTAAGG 59.629 47.826 0.00 0.00 39.30 2.69
939 945 3.006967 ACTTCTCCATTTGTGCTACGACT 59.993 43.478 0.00 0.00 0.00 4.18
940 946 3.326747 ACTTCTCCATTTGTGCTACGAC 58.673 45.455 0.00 0.00 0.00 4.34
943 949 3.617263 CGGTACTTCTCCATTTGTGCTAC 59.383 47.826 0.00 0.00 0.00 3.58
945 951 2.615493 CCGGTACTTCTCCATTTGTGCT 60.615 50.000 0.00 0.00 0.00 4.40
954 960 1.673808 ATCGCACCCGGTACTTCTCC 61.674 60.000 0.00 0.00 34.56 3.71
955 961 0.527817 CATCGCACCCGGTACTTCTC 60.528 60.000 0.00 0.00 34.56 2.87
960 966 0.457035 TTAGTCATCGCACCCGGTAC 59.543 55.000 0.00 0.00 34.56 3.34
961 967 0.457035 GTTAGTCATCGCACCCGGTA 59.543 55.000 0.00 0.00 34.56 4.02
964 970 0.806102 CTGGTTAGTCATCGCACCCG 60.806 60.000 0.00 0.00 0.00 5.28
1019 1025 2.171659 GGGCTGGGGTTTTTCTCAAAAA 59.828 45.455 0.00 0.00 37.99 1.94
1020 1026 1.765904 GGGCTGGGGTTTTTCTCAAAA 59.234 47.619 0.00 0.00 0.00 2.44
1021 1027 1.062505 AGGGCTGGGGTTTTTCTCAAA 60.063 47.619 0.00 0.00 0.00 2.69
1022 1028 0.560688 AGGGCTGGGGTTTTTCTCAA 59.439 50.000 0.00 0.00 0.00 3.02
1023 1029 1.451449 TAGGGCTGGGGTTTTTCTCA 58.549 50.000 0.00 0.00 0.00 3.27
1024 1030 2.597578 TTAGGGCTGGGGTTTTTCTC 57.402 50.000 0.00 0.00 0.00 2.87
1025 1031 3.309629 GGTATTAGGGCTGGGGTTTTTCT 60.310 47.826 0.00 0.00 0.00 2.52
1026 1032 3.028850 GGTATTAGGGCTGGGGTTTTTC 58.971 50.000 0.00 0.00 0.00 2.29
1027 1033 2.622190 CGGTATTAGGGCTGGGGTTTTT 60.622 50.000 0.00 0.00 0.00 1.94
1037 1044 2.410939 GGTTCGAATCGGTATTAGGGC 58.589 52.381 0.00 0.00 0.00 5.19
1050 1057 1.610554 GAGATGGGGGTCGGTTCGAA 61.611 60.000 0.00 0.00 37.72 3.71
1060 1067 1.608717 GATCGGATCGGAGATGGGGG 61.609 65.000 9.03 0.00 45.12 5.40
1081 1088 0.104120 CGTCGACCATGGGAAGCATA 59.896 55.000 18.09 0.00 0.00 3.14
1201 1208 2.309504 GGAGAAGGGAGGGTTGGGG 61.310 68.421 0.00 0.00 0.00 4.96
1516 1526 1.003573 AGGGGAGCGGAAGGAGAAT 59.996 57.895 0.00 0.00 0.00 2.40
1999 2009 1.023719 TCCACTTCTCCCCCTCCATA 58.976 55.000 0.00 0.00 0.00 2.74
2120 2130 0.546122 AATAGCGGCCACAATCAGGA 59.454 50.000 2.24 0.00 0.00 3.86
2216 2230 5.514279 CAATTCCTACGAAATTCCTGCATC 58.486 41.667 0.00 0.00 0.00 3.91
2218 2232 3.128589 GCAATTCCTACGAAATTCCTGCA 59.871 43.478 0.00 0.00 0.00 4.41
2450 2500 9.466497 TGGAAAACTCTATGCTTATTCAAGATT 57.534 29.630 0.00 0.00 33.20 2.40
2451 2501 9.466497 TTGGAAAACTCTATGCTTATTCAAGAT 57.534 29.630 0.00 0.00 33.20 2.40
2452 2502 8.862325 TTGGAAAACTCTATGCTTATTCAAGA 57.138 30.769 0.00 0.00 33.20 3.02
2466 2829 7.012421 GTCTACACTTGTGATTTGGAAAACTCT 59.988 37.037 7.83 0.00 0.00 3.24
2496 2859 1.172180 ACACGGTGGTTTCATGCTGG 61.172 55.000 13.48 0.00 0.00 4.85
2497 2860 0.040157 CACACGGTGGTTTCATGCTG 60.040 55.000 13.48 0.00 0.00 4.41
2498 2861 0.465460 ACACACGGTGGTTTCATGCT 60.465 50.000 13.48 0.00 37.94 3.79
2499 2862 0.317770 CACACACGGTGGTTTCATGC 60.318 55.000 13.48 0.00 44.04 4.06
2500 2863 3.843632 CACACACGGTGGTTTCATG 57.156 52.632 13.48 2.91 44.04 3.07
2509 2872 1.300931 CAGCAGTAGCACACACGGT 60.301 57.895 0.00 0.00 45.49 4.83
2510 2873 0.390340 ATCAGCAGTAGCACACACGG 60.390 55.000 0.00 0.00 45.49 4.94
2511 2874 0.717784 CATCAGCAGTAGCACACACG 59.282 55.000 0.00 0.00 45.49 4.49
2512 2875 0.445436 GCATCAGCAGTAGCACACAC 59.555 55.000 0.00 0.00 45.49 3.82
2513 2876 2.845019 GCATCAGCAGTAGCACACA 58.155 52.632 0.00 0.00 45.49 3.72
2538 2901 1.610522 AGGATATTGCTGGCGATTTGC 59.389 47.619 0.32 0.00 45.38 3.68
2539 2902 2.880268 TGAGGATATTGCTGGCGATTTG 59.120 45.455 0.32 0.00 0.00 2.32
2540 2903 3.213206 TGAGGATATTGCTGGCGATTT 57.787 42.857 0.32 0.00 0.00 2.17
2541 2904 2.936919 TGAGGATATTGCTGGCGATT 57.063 45.000 0.32 0.00 0.00 3.34
2542 2905 4.511527 CTTATGAGGATATTGCTGGCGAT 58.488 43.478 0.78 0.78 0.00 4.58
2543 2906 3.866066 GCTTATGAGGATATTGCTGGCGA 60.866 47.826 0.00 0.00 0.00 5.54
2544 2907 2.417933 GCTTATGAGGATATTGCTGGCG 59.582 50.000 0.00 0.00 0.00 5.69
2545 2908 3.439476 CAGCTTATGAGGATATTGCTGGC 59.561 47.826 0.00 0.00 37.82 4.85
2577 2990 0.455410 GCACAGCACACCAAACAGAA 59.545 50.000 0.00 0.00 0.00 3.02
2582 2995 0.310543 GATTCGCACAGCACACCAAA 59.689 50.000 0.00 0.00 0.00 3.28
2621 3034 2.355209 CCTTCCTGGGAGTTCTGCTTAC 60.355 54.545 0.32 0.00 0.00 2.34
2704 3117 4.624024 ACGTAACATTTGTCTCGGTATGTG 59.376 41.667 0.00 0.00 31.98 3.21
2706 3119 4.860352 TGACGTAACATTTGTCTCGGTATG 59.140 41.667 0.00 0.00 33.81 2.39
2707 3120 4.860907 GTGACGTAACATTTGTCTCGGTAT 59.139 41.667 0.00 0.00 33.81 2.73
2708 3121 4.229096 GTGACGTAACATTTGTCTCGGTA 58.771 43.478 0.00 0.26 33.81 4.02
2709 3122 3.054878 GTGACGTAACATTTGTCTCGGT 58.945 45.455 0.00 0.00 33.81 4.69
2710 3123 2.090041 CGTGACGTAACATTTGTCTCGG 59.910 50.000 3.43 0.00 42.53 4.63
2711 3124 3.333978 CGTGACGTAACATTTGTCTCG 57.666 47.619 3.43 2.38 41.26 4.04
2712 3125 4.201466 GCTACGTGACGTAACATTTGTCTC 60.201 45.833 19.00 0.00 41.82 3.36
2713 3126 3.671928 GCTACGTGACGTAACATTTGTCT 59.328 43.478 19.00 0.00 41.82 3.41
2720 3135 4.622313 CCTTTTATGCTACGTGACGTAACA 59.378 41.667 21.27 21.27 41.82 2.41
2902 3319 0.459585 GGCATTGGCGTACTCTCGAA 60.460 55.000 0.00 0.00 42.47 3.71
2903 3320 1.141019 GGCATTGGCGTACTCTCGA 59.859 57.895 0.00 0.00 42.47 4.04
2904 3321 2.230940 CGGCATTGGCGTACTCTCG 61.231 63.158 22.98 0.00 46.33 4.04
2905 3322 3.706140 CGGCATTGGCGTACTCTC 58.294 61.111 22.98 0.00 46.33 3.20
2913 3330 3.726291 AAAATATGGTACGGCATTGGC 57.274 42.857 0.00 0.00 40.13 4.52
2948 3365 8.893727 GCCACACATCTCTTGTAATTATACTTT 58.106 33.333 0.00 0.00 36.57 2.66
2949 3366 8.046708 TGCCACACATCTCTTGTAATTATACTT 58.953 33.333 0.00 0.00 36.57 2.24
2950 3367 7.495934 GTGCCACACATCTCTTGTAATTATACT 59.504 37.037 0.00 0.00 36.57 2.12
2951 3368 7.495934 AGTGCCACACATCTCTTGTAATTATAC 59.504 37.037 0.00 0.00 36.57 1.47
2952 3369 7.564793 AGTGCCACACATCTCTTGTAATTATA 58.435 34.615 0.00 0.00 36.57 0.98
2953 3370 6.418101 AGTGCCACACATCTCTTGTAATTAT 58.582 36.000 0.00 0.00 36.57 1.28
2954 3371 5.804639 AGTGCCACACATCTCTTGTAATTA 58.195 37.500 0.00 0.00 36.57 1.40
2955 3372 4.655963 AGTGCCACACATCTCTTGTAATT 58.344 39.130 0.00 0.00 36.57 1.40
2956 3373 4.292186 AGTGCCACACATCTCTTGTAAT 57.708 40.909 0.00 0.00 36.57 1.89
2957 3374 3.769739 AGTGCCACACATCTCTTGTAA 57.230 42.857 0.00 0.00 36.57 2.41
2958 3375 3.832490 ACTAGTGCCACACATCTCTTGTA 59.168 43.478 0.00 0.00 36.57 2.41
2959 3376 2.634940 ACTAGTGCCACACATCTCTTGT 59.365 45.455 0.00 0.00 39.91 3.16
2960 3377 2.998670 CACTAGTGCCACACATCTCTTG 59.001 50.000 10.54 0.00 36.74 3.02
2961 3378 3.325293 CACTAGTGCCACACATCTCTT 57.675 47.619 10.54 0.00 36.74 2.85
2982 3399 2.546321 GTGTGCGCTGAGTGTTCG 59.454 61.111 9.73 0.00 0.00 3.95
2983 3400 1.284982 ATCGTGTGCGCTGAGTGTTC 61.285 55.000 9.73 0.00 38.14 3.18
2984 3401 0.880278 AATCGTGTGCGCTGAGTGTT 60.880 50.000 9.73 0.00 38.14 3.32
2985 3402 0.038618 TAATCGTGTGCGCTGAGTGT 60.039 50.000 9.73 0.00 38.14 3.55
2986 3403 0.366871 GTAATCGTGTGCGCTGAGTG 59.633 55.000 9.73 0.00 38.14 3.51
2987 3404 0.038618 TGTAATCGTGTGCGCTGAGT 60.039 50.000 9.73 3.28 38.14 3.41
2988 3405 0.366871 GTGTAATCGTGTGCGCTGAG 59.633 55.000 9.73 0.00 38.14 3.35
2989 3406 1.011968 GGTGTAATCGTGTGCGCTGA 61.012 55.000 9.73 1.34 38.14 4.26
2990 3407 1.419922 GGTGTAATCGTGTGCGCTG 59.580 57.895 9.73 0.00 38.14 5.18
2991 3408 1.740296 GGGTGTAATCGTGTGCGCT 60.740 57.895 9.73 0.00 38.14 5.92
2992 3409 2.030401 TGGGTGTAATCGTGTGCGC 61.030 57.895 0.00 0.00 38.14 6.09
2993 3410 0.946700 TGTGGGTGTAATCGTGTGCG 60.947 55.000 0.00 0.00 39.92 5.34
2994 3411 0.515564 GTGTGGGTGTAATCGTGTGC 59.484 55.000 0.00 0.00 0.00 4.57
2995 3412 1.153353 GGTGTGGGTGTAATCGTGTG 58.847 55.000 0.00 0.00 0.00 3.82
2996 3413 0.759959 TGGTGTGGGTGTAATCGTGT 59.240 50.000 0.00 0.00 0.00 4.49
2997 3414 1.533731 GTTGGTGTGGGTGTAATCGTG 59.466 52.381 0.00 0.00 0.00 4.35
2998 3415 1.141254 TGTTGGTGTGGGTGTAATCGT 59.859 47.619 0.00 0.00 0.00 3.73
2999 3416 1.533731 GTGTTGGTGTGGGTGTAATCG 59.466 52.381 0.00 0.00 0.00 3.34
3000 3417 1.883926 GGTGTTGGTGTGGGTGTAATC 59.116 52.381 0.00 0.00 0.00 1.75
3001 3418 1.215673 TGGTGTTGGTGTGGGTGTAAT 59.784 47.619 0.00 0.00 0.00 1.89
3002 3419 0.624254 TGGTGTTGGTGTGGGTGTAA 59.376 50.000 0.00 0.00 0.00 2.41
3003 3420 0.107116 GTGGTGTTGGTGTGGGTGTA 60.107 55.000 0.00 0.00 0.00 2.90
3004 3421 1.379309 GTGGTGTTGGTGTGGGTGT 60.379 57.895 0.00 0.00 0.00 4.16
3005 3422 2.124693 GGTGGTGTTGGTGTGGGTG 61.125 63.158 0.00 0.00 0.00 4.61
3006 3423 2.277404 GGTGGTGTTGGTGTGGGT 59.723 61.111 0.00 0.00 0.00 4.51
3007 3424 2.520741 GGGTGGTGTTGGTGTGGG 60.521 66.667 0.00 0.00 0.00 4.61
3008 3425 1.380515 TTGGGTGGTGTTGGTGTGG 60.381 57.895 0.00 0.00 0.00 4.17
3009 3426 0.395036 TCTTGGGTGGTGTTGGTGTG 60.395 55.000 0.00 0.00 0.00 3.82
3010 3427 0.106719 CTCTTGGGTGGTGTTGGTGT 60.107 55.000 0.00 0.00 0.00 4.16
3011 3428 0.182537 TCTCTTGGGTGGTGTTGGTG 59.817 55.000 0.00 0.00 0.00 4.17
3012 3429 0.923358 TTCTCTTGGGTGGTGTTGGT 59.077 50.000 0.00 0.00 0.00 3.67
3013 3430 1.142870 TCTTCTCTTGGGTGGTGTTGG 59.857 52.381 0.00 0.00 0.00 3.77
3014 3431 2.222027 GTCTTCTCTTGGGTGGTGTTG 58.778 52.381 0.00 0.00 0.00 3.33
3015 3432 1.143073 GGTCTTCTCTTGGGTGGTGTT 59.857 52.381 0.00 0.00 0.00 3.32
3016 3433 0.765510 GGTCTTCTCTTGGGTGGTGT 59.234 55.000 0.00 0.00 0.00 4.16
3017 3434 1.059913 AGGTCTTCTCTTGGGTGGTG 58.940 55.000 0.00 0.00 0.00 4.17
3018 3435 2.111972 TCTAGGTCTTCTCTTGGGTGGT 59.888 50.000 0.00 0.00 0.00 4.16
3019 3436 2.498078 GTCTAGGTCTTCTCTTGGGTGG 59.502 54.545 0.00 0.00 0.00 4.61
3020 3437 3.436243 AGTCTAGGTCTTCTCTTGGGTG 58.564 50.000 0.00 0.00 0.00 4.61
3021 3438 3.837399 AGTCTAGGTCTTCTCTTGGGT 57.163 47.619 0.00 0.00 0.00 4.51
3022 3439 6.183360 GGAATTAGTCTAGGTCTTCTCTTGGG 60.183 46.154 0.00 0.00 0.00 4.12
3023 3440 6.609616 AGGAATTAGTCTAGGTCTTCTCTTGG 59.390 42.308 0.00 0.00 0.00 3.61
3024 3441 7.340743 TGAGGAATTAGTCTAGGTCTTCTCTTG 59.659 40.741 0.00 0.00 0.00 3.02
3025 3442 7.340999 GTGAGGAATTAGTCTAGGTCTTCTCTT 59.659 40.741 0.00 0.00 0.00 2.85
3026 3443 6.831868 GTGAGGAATTAGTCTAGGTCTTCTCT 59.168 42.308 0.00 0.00 0.00 3.10
3027 3444 6.603997 TGTGAGGAATTAGTCTAGGTCTTCTC 59.396 42.308 0.00 0.00 0.00 2.87
3028 3445 6.494952 TGTGAGGAATTAGTCTAGGTCTTCT 58.505 40.000 0.00 0.00 0.00 2.85
3029 3446 6.777213 TGTGAGGAATTAGTCTAGGTCTTC 57.223 41.667 0.00 0.00 0.00 2.87
3030 3447 7.554959 TTTGTGAGGAATTAGTCTAGGTCTT 57.445 36.000 0.00 0.00 0.00 3.01
3031 3448 7.387643 GTTTTGTGAGGAATTAGTCTAGGTCT 58.612 38.462 0.00 0.00 0.00 3.85
3032 3449 6.310711 CGTTTTGTGAGGAATTAGTCTAGGTC 59.689 42.308 0.00 0.00 0.00 3.85
3033 3450 6.164176 CGTTTTGTGAGGAATTAGTCTAGGT 58.836 40.000 0.00 0.00 0.00 3.08
3034 3451 6.164176 ACGTTTTGTGAGGAATTAGTCTAGG 58.836 40.000 0.00 0.00 0.00 3.02
3035 3452 7.170998 ACAACGTTTTGTGAGGAATTAGTCTAG 59.829 37.037 0.00 0.00 44.66 2.43
3036 3453 6.987992 ACAACGTTTTGTGAGGAATTAGTCTA 59.012 34.615 0.00 0.00 44.66 2.59
3037 3454 5.820947 ACAACGTTTTGTGAGGAATTAGTCT 59.179 36.000 0.00 0.00 44.66 3.24
3038 3455 6.056428 ACAACGTTTTGTGAGGAATTAGTC 57.944 37.500 0.00 0.00 44.66 2.59
3039 3456 6.764560 ACTACAACGTTTTGTGAGGAATTAGT 59.235 34.615 0.00 0.00 45.91 2.24
3040 3457 7.186021 ACTACAACGTTTTGTGAGGAATTAG 57.814 36.000 0.00 0.00 45.91 1.73
3041 3458 6.203338 GGACTACAACGTTTTGTGAGGAATTA 59.797 38.462 0.00 0.00 45.91 1.40
3042 3459 5.008316 GGACTACAACGTTTTGTGAGGAATT 59.992 40.000 0.00 0.00 45.91 2.17
3043 3460 4.514066 GGACTACAACGTTTTGTGAGGAAT 59.486 41.667 0.00 0.00 45.91 3.01
3044 3461 3.872771 GGACTACAACGTTTTGTGAGGAA 59.127 43.478 0.00 0.00 45.91 3.36
3045 3462 3.133362 AGGACTACAACGTTTTGTGAGGA 59.867 43.478 0.00 0.00 45.91 3.71
3046 3463 3.463944 AGGACTACAACGTTTTGTGAGG 58.536 45.455 0.00 0.00 45.91 3.86
3047 3464 3.493503 GGAGGACTACAACGTTTTGTGAG 59.506 47.826 0.00 0.00 45.91 3.51
3048 3465 3.118702 TGGAGGACTACAACGTTTTGTGA 60.119 43.478 0.00 0.00 45.91 3.58
3049 3466 3.199677 TGGAGGACTACAACGTTTTGTG 58.800 45.455 0.00 0.00 45.91 3.33
3050 3467 3.624410 GTTGGAGGACTACAACGTTTTGT 59.376 43.478 11.34 0.00 43.62 2.83
3051 3468 4.205323 GTTGGAGGACTACAACGTTTTG 57.795 45.455 11.34 0.00 43.62 2.44
3058 3475 0.034337 GCGGTGTTGGAGGACTACAA 59.966 55.000 0.00 0.00 0.00 2.41
3059 3476 1.669440 GCGGTGTTGGAGGACTACA 59.331 57.895 0.00 0.00 0.00 2.74
3060 3477 1.079336 GGCGGTGTTGGAGGACTAC 60.079 63.158 0.00 0.00 0.00 2.73
3061 3478 0.040058 TAGGCGGTGTTGGAGGACTA 59.960 55.000 0.00 0.00 0.00 2.59
3062 3479 1.229082 TAGGCGGTGTTGGAGGACT 60.229 57.895 0.00 0.00 0.00 3.85
3063 3480 1.079336 GTAGGCGGTGTTGGAGGAC 60.079 63.158 0.00 0.00 0.00 3.85
3064 3481 2.288025 GGTAGGCGGTGTTGGAGGA 61.288 63.158 0.00 0.00 0.00 3.71
3065 3482 2.267961 GGTAGGCGGTGTTGGAGG 59.732 66.667 0.00 0.00 0.00 4.30
3066 3483 2.125673 CGGTAGGCGGTGTTGGAG 60.126 66.667 0.00 0.00 0.00 3.86
3067 3484 4.382320 GCGGTAGGCGGTGTTGGA 62.382 66.667 0.00 0.00 0.00 3.53
3077 3494 3.358932 AATGGGGCCAAGCGGTAGG 62.359 63.158 4.39 0.00 33.28 3.18
3078 3495 1.823899 GAATGGGGCCAAGCGGTAG 60.824 63.158 4.39 0.00 33.28 3.18
3079 3496 2.274104 GAATGGGGCCAAGCGGTA 59.726 61.111 4.39 0.00 33.28 4.02
3080 3497 3.661648 AGAATGGGGCCAAGCGGT 61.662 61.111 4.39 0.00 33.28 5.68
3081 3498 3.142838 CAGAATGGGGCCAAGCGG 61.143 66.667 4.39 0.00 0.00 5.52
3082 3499 2.891941 TAGCAGAATGGGGCCAAGCG 62.892 60.000 4.39 0.00 35.86 4.68
3083 3500 1.076777 TAGCAGAATGGGGCCAAGC 60.077 57.895 4.39 0.00 35.86 4.01
3084 3501 0.753111 GGTAGCAGAATGGGGCCAAG 60.753 60.000 4.39 0.00 35.86 3.61
3085 3502 1.214305 AGGTAGCAGAATGGGGCCAA 61.214 55.000 4.39 0.00 35.86 4.52
3086 3503 1.619363 AGGTAGCAGAATGGGGCCA 60.619 57.895 4.39 0.00 35.86 5.36
3087 3504 1.149401 GAGGTAGCAGAATGGGGCC 59.851 63.158 0.00 0.00 35.86 5.80
3088 3505 0.255890 TTGAGGTAGCAGAATGGGGC 59.744 55.000 0.00 0.00 35.86 5.80
3089 3506 1.561542 ACTTGAGGTAGCAGAATGGGG 59.438 52.381 0.00 0.00 35.86 4.96
3090 3507 4.065321 CTACTTGAGGTAGCAGAATGGG 57.935 50.000 0.00 0.00 40.99 4.00
3100 3517 5.049198 CGTCACTTGTACACTACTTGAGGTA 60.049 44.000 0.00 0.00 0.00 3.08
3101 3518 4.261489 CGTCACTTGTACACTACTTGAGGT 60.261 45.833 0.00 0.00 0.00 3.85
3102 3519 4.023450 TCGTCACTTGTACACTACTTGAGG 60.023 45.833 0.00 0.41 0.00 3.86
3103 3520 5.104562 TCGTCACTTGTACACTACTTGAG 57.895 43.478 0.00 0.00 0.00 3.02
3104 3521 4.556104 GCTCGTCACTTGTACACTACTTGA 60.556 45.833 0.00 0.00 0.00 3.02
3105 3522 3.669122 GCTCGTCACTTGTACACTACTTG 59.331 47.826 0.00 0.00 0.00 3.16
3106 3523 3.568853 AGCTCGTCACTTGTACACTACTT 59.431 43.478 0.00 0.00 0.00 2.24
3107 3524 3.147629 AGCTCGTCACTTGTACACTACT 58.852 45.455 0.00 0.00 0.00 2.57
3108 3525 3.555917 AGCTCGTCACTTGTACACTAC 57.444 47.619 0.00 0.00 0.00 2.73
3109 3526 3.364664 CGAAGCTCGTCACTTGTACACTA 60.365 47.826 0.00 0.00 34.72 2.74
3110 3527 2.604855 CGAAGCTCGTCACTTGTACACT 60.605 50.000 0.00 0.00 34.72 3.55
3111 3528 1.714460 CGAAGCTCGTCACTTGTACAC 59.286 52.381 0.00 0.00 34.72 2.90
3112 3529 1.605232 TCGAAGCTCGTCACTTGTACA 59.395 47.619 0.00 0.00 41.35 2.90
3113 3530 2.327081 TCGAAGCTCGTCACTTGTAC 57.673 50.000 0.00 0.00 41.35 2.90
3114 3531 2.415491 CCATCGAAGCTCGTCACTTGTA 60.415 50.000 0.00 0.00 41.35 2.41
3115 3532 1.670087 CCATCGAAGCTCGTCACTTGT 60.670 52.381 0.00 0.00 41.35 3.16
3116 3533 0.994995 CCATCGAAGCTCGTCACTTG 59.005 55.000 0.00 0.00 41.35 3.16
3117 3534 0.603569 ACCATCGAAGCTCGTCACTT 59.396 50.000 0.00 0.00 41.35 3.16
3118 3535 0.109086 CACCATCGAAGCTCGTCACT 60.109 55.000 0.00 0.00 41.35 3.41
3119 3536 0.388649 ACACCATCGAAGCTCGTCAC 60.389 55.000 0.00 0.00 41.35 3.67
3120 3537 0.317160 AACACCATCGAAGCTCGTCA 59.683 50.000 0.00 0.00 41.35 4.35
3121 3538 0.992802 GAACACCATCGAAGCTCGTC 59.007 55.000 0.00 0.00 41.35 4.20
3122 3539 0.603569 AGAACACCATCGAAGCTCGT 59.396 50.000 0.00 0.00 41.35 4.18
3123 3540 1.714794 AAGAACACCATCGAAGCTCG 58.285 50.000 0.00 0.00 42.10 5.03
3124 3541 2.808543 ACAAAGAACACCATCGAAGCTC 59.191 45.455 0.00 0.00 0.00 4.09
3125 3542 2.851195 ACAAAGAACACCATCGAAGCT 58.149 42.857 0.00 0.00 0.00 3.74
3126 3543 3.003275 TCAACAAAGAACACCATCGAAGC 59.997 43.478 0.00 0.00 0.00 3.86
3127 3544 4.811555 TCAACAAAGAACACCATCGAAG 57.188 40.909 0.00 0.00 0.00 3.79
3128 3545 4.215399 GGATCAACAAAGAACACCATCGAA 59.785 41.667 0.00 0.00 0.00 3.71
3129 3546 3.751175 GGATCAACAAAGAACACCATCGA 59.249 43.478 0.00 0.00 0.00 3.59
3130 3547 3.501828 TGGATCAACAAAGAACACCATCG 59.498 43.478 0.00 0.00 0.00 3.84
3131 3548 5.222631 GTTGGATCAACAAAGAACACCATC 58.777 41.667 5.97 0.00 43.09 3.51
3132 3549 4.039124 GGTTGGATCAACAAAGAACACCAT 59.961 41.667 12.06 0.00 45.11 3.55
3133 3550 3.383185 GGTTGGATCAACAAAGAACACCA 59.617 43.478 12.06 0.00 45.11 4.17
3134 3551 3.636764 AGGTTGGATCAACAAAGAACACC 59.363 43.478 12.06 0.00 45.11 4.16
3135 3552 4.918810 AGGTTGGATCAACAAAGAACAC 57.081 40.909 12.06 0.00 45.11 3.32
3136 3553 6.775142 TCAATAGGTTGGATCAACAAAGAACA 59.225 34.615 12.06 0.00 45.11 3.18
3137 3554 7.214467 TCAATAGGTTGGATCAACAAAGAAC 57.786 36.000 12.06 0.00 45.11 3.01
3138 3555 7.831691 TTCAATAGGTTGGATCAACAAAGAA 57.168 32.000 12.06 6.32 45.11 2.52
3139 3556 7.831691 TTTCAATAGGTTGGATCAACAAAGA 57.168 32.000 12.06 1.43 45.11 2.52
3140 3557 7.384932 GGTTTTCAATAGGTTGGATCAACAAAG 59.615 37.037 12.06 0.00 45.11 2.77
3141 3558 7.213678 GGTTTTCAATAGGTTGGATCAACAAA 58.786 34.615 12.06 1.67 45.11 2.83
3142 3559 6.239458 GGGTTTTCAATAGGTTGGATCAACAA 60.239 38.462 12.06 1.36 45.11 2.83
3143 3560 5.245075 GGGTTTTCAATAGGTTGGATCAACA 59.755 40.000 12.06 0.00 45.11 3.33
3144 3561 5.480422 AGGGTTTTCAATAGGTTGGATCAAC 59.520 40.000 0.00 2.46 42.89 3.18
3145 3562 5.650283 AGGGTTTTCAATAGGTTGGATCAA 58.350 37.500 0.00 0.00 35.99 2.57
3146 3563 5.261216 GAGGGTTTTCAATAGGTTGGATCA 58.739 41.667 0.00 0.00 35.99 2.92
3147 3564 4.335594 CGAGGGTTTTCAATAGGTTGGATC 59.664 45.833 0.00 0.00 35.99 3.36
3148 3565 4.270008 CGAGGGTTTTCAATAGGTTGGAT 58.730 43.478 0.00 0.00 35.99 3.41
3149 3566 3.560453 CCGAGGGTTTTCAATAGGTTGGA 60.560 47.826 0.00 0.00 35.99 3.53
3150 3567 2.752903 CCGAGGGTTTTCAATAGGTTGG 59.247 50.000 0.00 0.00 35.99 3.77
3151 3568 2.752903 CCCGAGGGTTTTCAATAGGTTG 59.247 50.000 0.00 0.00 36.65 3.77
3152 3569 3.081710 CCCGAGGGTTTTCAATAGGTT 57.918 47.619 0.00 0.00 0.00 3.50
3153 3570 2.801077 CCCGAGGGTTTTCAATAGGT 57.199 50.000 0.00 0.00 0.00 3.08
3165 3582 2.245438 GAAGCAGAGGAACCCGAGGG 62.245 65.000 6.63 6.63 42.03 4.30
3166 3583 1.219393 GAAGCAGAGGAACCCGAGG 59.781 63.158 0.00 0.00 0.00 4.63
3167 3584 1.219393 GGAAGCAGAGGAACCCGAG 59.781 63.158 0.00 0.00 0.00 4.63
3168 3585 1.535444 TGGAAGCAGAGGAACCCGA 60.535 57.895 0.00 0.00 0.00 5.14
3169 3586 1.376037 GTGGAAGCAGAGGAACCCG 60.376 63.158 0.00 0.00 0.00 5.28
3170 3587 0.110486 TTGTGGAAGCAGAGGAACCC 59.890 55.000 0.00 0.00 0.00 4.11
3171 3588 1.815003 CATTGTGGAAGCAGAGGAACC 59.185 52.381 0.00 0.00 0.00 3.62
3172 3589 1.200948 GCATTGTGGAAGCAGAGGAAC 59.799 52.381 0.00 0.00 0.00 3.62
3173 3590 1.538047 GCATTGTGGAAGCAGAGGAA 58.462 50.000 0.00 0.00 0.00 3.36
3174 3591 0.322816 GGCATTGTGGAAGCAGAGGA 60.323 55.000 0.00 0.00 0.00 3.71
3175 3592 1.318158 GGGCATTGTGGAAGCAGAGG 61.318 60.000 0.00 0.00 0.00 3.69
3176 3593 0.609957 TGGGCATTGTGGAAGCAGAG 60.610 55.000 0.00 0.00 0.00 3.35
3177 3594 0.178967 TTGGGCATTGTGGAAGCAGA 60.179 50.000 0.00 0.00 0.00 4.26
3178 3595 0.680618 TTTGGGCATTGTGGAAGCAG 59.319 50.000 0.00 0.00 0.00 4.24
3179 3596 0.680618 CTTTGGGCATTGTGGAAGCA 59.319 50.000 0.00 0.00 0.00 3.91
3180 3597 0.037046 CCTTTGGGCATTGTGGAAGC 60.037 55.000 0.00 0.00 0.00 3.86
3181 3598 1.273327 GTCCTTTGGGCATTGTGGAAG 59.727 52.381 0.00 0.00 0.00 3.46
3182 3599 1.133199 AGTCCTTTGGGCATTGTGGAA 60.133 47.619 0.00 0.00 0.00 3.53
3183 3600 0.482446 AGTCCTTTGGGCATTGTGGA 59.518 50.000 0.00 0.00 0.00 4.02
3184 3601 0.604578 CAGTCCTTTGGGCATTGTGG 59.395 55.000 0.00 0.00 0.00 4.17
3185 3602 0.037975 GCAGTCCTTTGGGCATTGTG 60.038 55.000 0.00 0.00 0.00 3.33
3186 3603 0.469705 TGCAGTCCTTTGGGCATTGT 60.470 50.000 0.00 0.00 0.00 2.71
3187 3604 0.245539 CTGCAGTCCTTTGGGCATTG 59.754 55.000 5.25 0.00 35.45 2.82
3188 3605 0.178953 ACTGCAGTCCTTTGGGCATT 60.179 50.000 15.25 0.00 35.45 3.56
3189 3606 0.896940 CACTGCAGTCCTTTGGGCAT 60.897 55.000 18.64 0.00 35.45 4.40
3190 3607 1.529010 CACTGCAGTCCTTTGGGCA 60.529 57.895 18.64 0.00 34.66 5.36
3191 3608 1.228245 TCACTGCAGTCCTTTGGGC 60.228 57.895 18.64 0.00 0.00 5.36
3192 3609 2.633860 GTCACTGCAGTCCTTTGGG 58.366 57.895 18.64 3.81 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.