Multiple sequence alignment - TraesCS4B01G157100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G157100 chr4B 100.000 4887 0 0 1 4887 295044257 295049143 0.000000e+00 9025.0
1 TraesCS4B01G157100 chr4B 97.297 148 3 1 2777 2923 604279638 604279785 2.920000e-62 250.0
2 TraesCS4B01G157100 chr4B 97.500 40 1 0 4731 4770 74024862 74024823 8.780000e-08 69.4
3 TraesCS4B01G157100 chr4B 95.349 43 2 0 4728 4770 149807693 149807735 8.780000e-08 69.4
4 TraesCS4B01G157100 chr4B 97.500 40 1 0 4731 4770 302043371 302043332 8.780000e-08 69.4
5 TraesCS4B01G157100 chr4D 93.948 1801 52 23 2912 4689 265373983 265375749 0.000000e+00 2669.0
6 TraesCS4B01G157100 chr4D 96.529 1383 36 4 1403 2776 265372621 265374000 0.000000e+00 2278.0
7 TraesCS4B01G157100 chr4D 82.060 903 93 30 1 881 7137204 7138059 0.000000e+00 706.0
8 TraesCS4B01G157100 chr4D 95.677 347 9 1 967 1313 265372283 265372623 1.990000e-153 553.0
9 TraesCS4B01G157100 chr4D 90.500 200 14 3 4690 4887 265375707 265375903 4.850000e-65 259.0
10 TraesCS4B01G157100 chr4A 96.352 1069 32 4 1709 2776 245258107 245259169 0.000000e+00 1751.0
11 TraesCS4B01G157100 chr4A 96.593 675 23 0 3357 4031 245259913 245260587 0.000000e+00 1120.0
12 TraesCS4B01G157100 chr4A 94.144 444 22 3 2912 3353 245259152 245259593 0.000000e+00 673.0
13 TraesCS4B01G157100 chr4A 93.533 433 20 5 884 1313 245257177 245257604 5.330000e-179 638.0
14 TraesCS4B01G157100 chr4A 87.432 549 39 8 4028 4573 245275110 245275631 5.410000e-169 604.0
15 TraesCS4B01G157100 chr4A 93.312 314 19 1 1405 1716 245257607 245257920 3.450000e-126 462.0
16 TraesCS4B01G157100 chr4A 89.105 257 22 6 334 586 708282659 708282405 1.020000e-81 315.0
17 TraesCS4B01G157100 chr4A 98.601 143 2 0 2777 2919 189612718 189612576 2.260000e-63 254.0
18 TraesCS4B01G157100 chr4A 82.286 175 30 1 4515 4688 539147549 539147375 3.050000e-32 150.0
19 TraesCS4B01G157100 chr4A 100.000 40 0 0 3316 3355 245259587 245259626 1.890000e-09 75.0
20 TraesCS4B01G157100 chr4A 97.500 40 1 0 4731 4770 732922037 732921998 8.780000e-08 69.4
21 TraesCS4B01G157100 chr4A 100.000 29 0 0 852 880 174807951 174807923 2.000000e-03 54.7
22 TraesCS4B01G157100 chr5A 96.459 706 25 0 2071 2776 488891281 488891986 0.000000e+00 1166.0
23 TraesCS4B01G157100 chr5A 96.593 675 23 0 3357 4031 488892731 488893405 0.000000e+00 1120.0
24 TraesCS4B01G157100 chr5A 94.737 608 24 4 1405 2010 488890681 488891282 0.000000e+00 939.0
25 TraesCS4B01G157100 chr5A 93.919 444 23 3 2912 3353 488891969 488892410 0.000000e+00 667.0
26 TraesCS4B01G157100 chr5A 92.711 439 18 5 884 1313 488890245 488890678 5.370000e-174 621.0
27 TraesCS4B01G157100 chr5A 87.614 549 37 8 4028 4573 488898106 488898626 4.180000e-170 608.0
28 TraesCS4B01G157100 chr5A 82.955 176 27 3 4515 4688 606294749 606294923 6.550000e-34 156.0
29 TraesCS4B01G157100 chr5A 100.000 40 0 0 3316 3355 488892404 488892443 1.890000e-09 75.0
30 TraesCS4B01G157100 chr5A 91.837 49 2 1 4731 4779 419649503 419649457 3.160000e-07 67.6
31 TraesCS4B01G157100 chr1B 88.023 885 65 14 1 881 112860678 112861525 0.000000e+00 1009.0
32 TraesCS4B01G157100 chr1B 92.593 54 3 1 828 881 544443598 544443546 5.250000e-10 76.8
33 TraesCS4B01G157100 chr1B 95.349 43 2 0 4728 4770 178580049 178580091 8.780000e-08 69.4
34 TraesCS4B01G157100 chr3B 85.923 888 99 20 1 881 662808322 662807454 0.000000e+00 924.0
35 TraesCS4B01G157100 chr3B 89.081 577 49 4 2 564 696742108 696741532 0.000000e+00 704.0
36 TraesCS4B01G157100 chr3B 96.667 150 4 1 2772 2920 145682431 145682282 1.050000e-61 248.0
37 TraesCS4B01G157100 chr3B 89.916 119 10 1 4771 4887 250753378 250753260 8.470000e-33 152.0
38 TraesCS4B01G157100 chr7D 84.590 902 77 35 1 880 46540703 46539842 0.000000e+00 839.0
39 TraesCS4B01G157100 chr7D 82.022 890 98 37 1 880 489294277 489293440 0.000000e+00 701.0
40 TraesCS4B01G157100 chr7D 82.942 809 91 17 89 880 121802927 121802149 0.000000e+00 686.0
41 TraesCS4B01G157100 chr7D 93.458 107 7 0 1301 1407 1943703 1943597 5.060000e-35 159.0
42 TraesCS4B01G157100 chr7D 91.304 115 8 1 4775 4887 326060688 326060574 6.550000e-34 156.0
43 TraesCS4B01G157100 chr7D 88.710 124 10 2 4768 4887 364852565 364852442 1.100000e-31 148.0
44 TraesCS4B01G157100 chr7D 81.169 154 23 6 4480 4631 607533982 607534131 8.590000e-23 119.0
45 TraesCS4B01G157100 chr6B 84.520 885 95 20 1 880 522677535 522678382 0.000000e+00 837.0
46 TraesCS4B01G157100 chr6B 93.458 107 6 1 1306 1412 374852366 374852261 1.820000e-34 158.0
47 TraesCS4B01G157100 chr6B 95.349 43 2 0 4728 4770 264329166 264329208 8.780000e-08 69.4
48 TraesCS4B01G157100 chr1D 83.703 902 97 26 1 881 175814698 175815570 0.000000e+00 806.0
49 TraesCS4B01G157100 chr1D 88.186 601 47 13 1 586 318152821 318152230 0.000000e+00 695.0
50 TraesCS4B01G157100 chr1D 88.328 574 43 8 1 551 335018122 335017550 0.000000e+00 667.0
51 TraesCS4B01G157100 chr1D 99.306 144 1 0 2777 2920 235669449 235669306 1.350000e-65 261.0
52 TraesCS4B01G157100 chr1D 97.315 149 4 0 2777 2925 370641922 370642070 2.260000e-63 254.0
53 TraesCS4B01G157100 chr1D 97.931 145 3 0 2777 2921 235664843 235664699 8.120000e-63 252.0
54 TraesCS4B01G157100 chr1D 96.575 146 4 1 2777 2921 332271 332126 1.760000e-59 241.0
55 TraesCS4B01G157100 chr1D 78.261 184 35 5 4499 4680 78116812 78116632 4.000000e-21 113.0
56 TraesCS4B01G157100 chr2D 83.630 898 87 21 1 880 368971344 368972199 0.000000e+00 789.0
57 TraesCS4B01G157100 chr2D 89.344 122 11 1 4768 4887 298856216 298856095 8.470000e-33 152.0
58 TraesCS4B01G157100 chr3A 82.425 899 107 29 2 880 709536753 709537620 0.000000e+00 737.0
59 TraesCS4B01G157100 chr3A 81.061 924 99 36 2 880 709502333 709503225 0.000000e+00 667.0
60 TraesCS4B01G157100 chr3A 79.762 168 30 3 4515 4680 49873001 49872836 8.590000e-23 119.0
61 TraesCS4B01G157100 chr3D 88.300 547 46 12 1 541 75121562 75121028 1.480000e-179 640.0
62 TraesCS4B01G157100 chr3D 86.018 565 58 11 1 551 104711253 104710696 1.960000e-163 586.0
63 TraesCS4B01G157100 chr2B 83.402 729 74 19 174 884 102394174 102393475 2.480000e-177 632.0
64 TraesCS4B01G157100 chr2B 93.578 109 7 0 1298 1406 127747401 127747509 3.910000e-36 163.0
65 TraesCS4B01G157100 chr2B 91.525 118 8 2 1294 1411 695410839 695410954 1.410000e-35 161.0
66 TraesCS4B01G157100 chr2B 91.525 118 8 2 1294 1411 695437525 695437640 1.410000e-35 161.0
67 TraesCS4B01G157100 chr2B 95.098 102 5 0 1308 1409 774087955 774087854 1.410000e-35 161.0
68 TraesCS4B01G157100 chr2B 92.035 113 7 2 1294 1406 12876055 12876165 1.820000e-34 158.0
69 TraesCS4B01G157100 chr2A 97.973 148 2 1 2774 2920 95819240 95819387 6.280000e-64 255.0
70 TraesCS4B01G157100 chr2A 93.519 108 5 2 1308 1415 619208130 619208025 5.060000e-35 159.0
71 TraesCS4B01G157100 chr5D 97.931 145 2 1 2777 2920 378907909 378908053 2.920000e-62 250.0
72 TraesCS4B01G157100 chr5D 89.344 122 9 3 4768 4887 66675263 66675144 3.050000e-32 150.0
73 TraesCS4B01G157100 chr7A 84.000 175 27 1 4515 4688 5624981 5625155 3.030000e-37 167.0
74 TraesCS4B01G157100 chr7A 83.429 175 28 1 4515 4688 609608766 609608592 1.410000e-35 161.0
75 TraesCS4B01G157100 chr7A 97.500 40 1 0 4731 4770 416772178 416772139 8.780000e-08 69.4
76 TraesCS4B01G157100 chr6D 90.984 122 7 2 4768 4887 158422515 158422396 1.410000e-35 161.0
77 TraesCS4B01G157100 chr6D 89.344 122 9 2 4768 4887 126990963 126990844 3.050000e-32 150.0
78 TraesCS4B01G157100 chr6A 95.050 101 5 0 1313 1413 6606449 6606349 5.060000e-35 159.0
79 TraesCS4B01G157100 chr5B 89.344 122 11 1 4768 4887 285379565 285379444 8.470000e-33 152.0
80 TraesCS4B01G157100 chr7B 78.443 167 32 3 4516 4680 659622736 659622900 6.690000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G157100 chr4B 295044257 295049143 4886 False 9025.000000 9025 100.000000 1 4887 1 chr4B.!!$F2 4886
1 TraesCS4B01G157100 chr4D 265372283 265375903 3620 False 1439.750000 2669 94.163500 967 4887 4 chr4D.!!$F2 3920
2 TraesCS4B01G157100 chr4D 7137204 7138059 855 False 706.000000 706 82.060000 1 881 1 chr4D.!!$F1 880
3 TraesCS4B01G157100 chr4A 245257177 245260587 3410 False 786.500000 1751 95.655667 884 4031 6 chr4A.!!$F2 3147
4 TraesCS4B01G157100 chr4A 245275110 245275631 521 False 604.000000 604 87.432000 4028 4573 1 chr4A.!!$F1 545
5 TraesCS4B01G157100 chr5A 488890245 488893405 3160 False 764.666667 1166 95.736500 884 4031 6 chr5A.!!$F3 3147
6 TraesCS4B01G157100 chr5A 488898106 488898626 520 False 608.000000 608 87.614000 4028 4573 1 chr5A.!!$F1 545
7 TraesCS4B01G157100 chr1B 112860678 112861525 847 False 1009.000000 1009 88.023000 1 881 1 chr1B.!!$F1 880
8 TraesCS4B01G157100 chr3B 662807454 662808322 868 True 924.000000 924 85.923000 1 881 1 chr3B.!!$R3 880
9 TraesCS4B01G157100 chr3B 696741532 696742108 576 True 704.000000 704 89.081000 2 564 1 chr3B.!!$R4 562
10 TraesCS4B01G157100 chr7D 46539842 46540703 861 True 839.000000 839 84.590000 1 880 1 chr7D.!!$R2 879
11 TraesCS4B01G157100 chr7D 489293440 489294277 837 True 701.000000 701 82.022000 1 880 1 chr7D.!!$R6 879
12 TraesCS4B01G157100 chr7D 121802149 121802927 778 True 686.000000 686 82.942000 89 880 1 chr7D.!!$R3 791
13 TraesCS4B01G157100 chr6B 522677535 522678382 847 False 837.000000 837 84.520000 1 880 1 chr6B.!!$F2 879
14 TraesCS4B01G157100 chr1D 175814698 175815570 872 False 806.000000 806 83.703000 1 881 1 chr1D.!!$F1 880
15 TraesCS4B01G157100 chr1D 318152230 318152821 591 True 695.000000 695 88.186000 1 586 1 chr1D.!!$R5 585
16 TraesCS4B01G157100 chr1D 335017550 335018122 572 True 667.000000 667 88.328000 1 551 1 chr1D.!!$R6 550
17 TraesCS4B01G157100 chr2D 368971344 368972199 855 False 789.000000 789 83.630000 1 880 1 chr2D.!!$F1 879
18 TraesCS4B01G157100 chr3A 709536753 709537620 867 False 737.000000 737 82.425000 2 880 1 chr3A.!!$F2 878
19 TraesCS4B01G157100 chr3A 709502333 709503225 892 False 667.000000 667 81.061000 2 880 1 chr3A.!!$F1 878
20 TraesCS4B01G157100 chr3D 75121028 75121562 534 True 640.000000 640 88.300000 1 541 1 chr3D.!!$R1 540
21 TraesCS4B01G157100 chr3D 104710696 104711253 557 True 586.000000 586 86.018000 1 551 1 chr3D.!!$R2 550
22 TraesCS4B01G157100 chr2B 102393475 102394174 699 True 632.000000 632 83.402000 174 884 1 chr2B.!!$R1 710


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 871 0.037605 GGTTGACTGACCCTACCGTG 60.038 60.0 0.0 0.0 33.41 4.94 F
1325 1442 0.115745 AAGTAGTCCCTCCGTCCCAA 59.884 55.0 0.0 0.0 0.00 4.12 F
1326 1443 0.115745 AGTAGTCCCTCCGTCCCAAA 59.884 55.0 0.0 0.0 0.00 3.28 F
2625 2945 0.170561 CTTGTGATGCCTGCTCTTGC 59.829 55.0 0.0 0.0 40.20 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 2240 1.008449 AGCATACCAGGTACCACTCCT 59.992 52.381 15.94 0.00 35.45 3.69 R
2876 3197 0.466555 TATTGTGTATTGGGCCCGCC 60.467 55.000 19.37 4.97 0.00 6.13 R
2877 3198 1.269448 CATATTGTGTATTGGGCCCGC 59.731 52.381 19.37 7.95 0.00 6.13 R
3943 4582 0.391597 TCGGAAGATGGCGGATTACC 59.608 55.000 0.00 0.00 33.31 2.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 1.002430 ACTTTGAGAGCAATGCGGAGA 59.998 47.619 0.00 0.00 33.71 3.71
203 230 2.740580 CGAAAACTATAGCGGGCAAGGA 60.741 50.000 0.00 0.00 0.00 3.36
229 256 2.027625 GAGTGCTTGAACGGTCGGG 61.028 63.158 0.00 0.00 0.00 5.14
246 273 4.980805 GTGCCGACCAGCGTTCCA 62.981 66.667 0.00 0.00 38.67 3.53
315 344 1.761198 GGCCTAACATACGAGGAGGTT 59.239 52.381 0.00 0.00 34.46 3.50
325 354 3.045601 ACGAGGAGGTTTGAAGATGTG 57.954 47.619 0.00 0.00 0.00 3.21
328 357 3.744660 GAGGAGGTTTGAAGATGTGTGT 58.255 45.455 0.00 0.00 0.00 3.72
336 386 1.067565 TGAAGATGTGTGTCCGCTCTC 60.068 52.381 0.00 0.00 0.00 3.20
417 468 6.238538 CGTTAGTTGGGTTGTCAAACTATGTT 60.239 38.462 0.00 0.00 36.48 2.71
565 656 9.758651 ACCTGTGATAAATTTTTACAAAAGACC 57.241 29.630 0.00 0.00 0.00 3.85
566 657 9.981114 CCTGTGATAAATTTTTACAAAAGACCT 57.019 29.630 0.00 0.00 0.00 3.85
674 768 6.448207 GTAGGATATCATAACCTACCGTCC 57.552 45.833 16.96 0.00 45.85 4.79
679 773 3.377253 TCATAACCTACCGTCCAGACT 57.623 47.619 0.00 0.00 0.00 3.24
763 857 0.912487 AACCCCTGGCGATAGGTTGA 60.912 55.000 3.85 0.00 41.03 3.18
777 871 0.037605 GGTTGACTGACCCTACCGTG 60.038 60.000 0.00 0.00 33.41 4.94
804 898 0.620700 ATGGCGGTAGGAGAAGGGTT 60.621 55.000 0.00 0.00 0.00 4.11
806 900 1.197812 GGCGGTAGGAGAAGGGTTAA 58.802 55.000 0.00 0.00 0.00 2.01
881 984 7.386059 AGGGTTAAAACATGAAATTTAGCCTG 58.614 34.615 22.12 0.00 40.31 4.85
938 1041 9.620259 ATCTTCTGTGGATAAAGGATAAGAAAC 57.380 33.333 0.00 0.00 0.00 2.78
950 1059 3.120304 GGATAAGAAACCTGCACACGAAC 60.120 47.826 0.00 0.00 0.00 3.95
952 1061 1.299541 AGAAACCTGCACACGAACAG 58.700 50.000 0.00 0.00 0.00 3.16
1048 1163 1.551883 TCCCTTGGTACCGCTTACTTC 59.448 52.381 7.57 0.00 0.00 3.01
1049 1164 1.553704 CCCTTGGTACCGCTTACTTCT 59.446 52.381 7.57 0.00 0.00 2.85
1050 1165 2.027469 CCCTTGGTACCGCTTACTTCTT 60.027 50.000 7.57 0.00 0.00 2.52
1183 1298 0.392998 GCGGTCATGGATGGTTCACT 60.393 55.000 0.00 0.00 0.00 3.41
1245 1360 4.978083 TCGCCGAGAATAAGTAGTTCTT 57.022 40.909 0.00 0.00 36.13 2.52
1272 1387 2.037772 CGATGCTATTGGCTTAGGGACT 59.962 50.000 0.00 0.00 42.14 3.85
1273 1388 3.406764 GATGCTATTGGCTTAGGGACTG 58.593 50.000 0.00 0.00 40.17 3.51
1318 1435 2.543635 TGGTTACCAAGTAGTCCCTCC 58.456 52.381 0.00 0.00 0.00 4.30
1319 1436 1.479730 GGTTACCAAGTAGTCCCTCCG 59.520 57.143 0.00 0.00 0.00 4.63
1320 1437 2.174360 GTTACCAAGTAGTCCCTCCGT 58.826 52.381 0.00 0.00 0.00 4.69
1321 1438 2.134789 TACCAAGTAGTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
1322 1439 0.614134 ACCAAGTAGTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
1323 1440 1.328430 CCAAGTAGTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
1324 1441 0.613853 CAAGTAGTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
1325 1442 0.115745 AAGTAGTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
1326 1443 0.115745 AGTAGTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1327 1444 0.978907 GTAGTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1328 1445 1.558294 GTAGTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1329 1446 1.961133 AGTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1330 1447 2.271777 AGTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1331 1448 2.238898 AGTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1332 1449 2.026542 GTCCCTCCGTCCCAAAATAAGT 60.027 50.000 0.00 0.00 0.00 2.24
1333 1450 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1334 1451 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1335 1452 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1336 1453 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1337 1454 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1338 1455 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1339 1456 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1340 1457 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1341 1458 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1342 1459 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1343 1460 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1344 1461 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1345 1462 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1346 1463 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1347 1464 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1348 1465 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1351 1468 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
1352 1469 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
1353 1470 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
1354 1471 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
1355 1472 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
1356 1473 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
1358 1475 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
1359 1476 8.895737 GTCTCAACTTTGTACTAGCTCTAGTAT 58.104 37.037 16.96 1.87 46.57 2.12
1394 1511 9.793259 ACTAATCTCAAGACACTTATTTTTGGA 57.207 29.630 0.00 0.00 0.00 3.53
1396 1513 6.539649 TCTCAAGACACTTATTTTTGGACG 57.460 37.500 0.00 0.00 0.00 4.79
1397 1514 5.468746 TCTCAAGACACTTATTTTTGGACGG 59.531 40.000 0.00 0.00 0.00 4.79
1398 1515 5.369833 TCAAGACACTTATTTTTGGACGGA 58.630 37.500 0.00 0.00 0.00 4.69
1399 1516 5.468746 TCAAGACACTTATTTTTGGACGGAG 59.531 40.000 0.00 0.00 0.00 4.63
1400 1517 4.324267 AGACACTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
1401 1518 3.418047 ACACTTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
1402 1519 3.073356 ACACTTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
1403 1520 3.689649 CACTTATTTTTGGACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
1455 1572 1.935873 CTCGGGAGACACGTAATCGTA 59.064 52.381 0.00 0.00 40.84 3.43
1598 1715 1.999648 ACGTCCATAGGCCGGTAATA 58.000 50.000 1.90 0.00 0.00 0.98
1634 1753 7.233962 TGCATCTATCATTTAGCATCCCAAATT 59.766 33.333 0.00 0.00 0.00 1.82
1644 1763 7.487822 TTAGCATCCCAAATTTTTGTATCCA 57.512 32.000 2.63 0.00 36.45 3.41
1876 2196 3.781079 TTGTGCAGAACTGAAACAAGG 57.219 42.857 14.74 0.00 35.33 3.61
1887 2207 8.507249 CAGAACTGAAACAAGGGTCTTTAATAG 58.493 37.037 0.00 0.00 0.00 1.73
1888 2208 8.218488 AGAACTGAAACAAGGGTCTTTAATAGT 58.782 33.333 0.00 0.00 0.00 2.12
1889 2209 9.498176 GAACTGAAACAAGGGTCTTTAATAGTA 57.502 33.333 0.00 0.00 0.00 1.82
1920 2240 5.204409 TGTTACTACCGAGCAAGAAAAGA 57.796 39.130 0.00 0.00 0.00 2.52
1931 2251 3.075148 GCAAGAAAAGAGGAGTGGTACC 58.925 50.000 4.43 4.43 0.00 3.34
1976 2296 3.262405 AGGGTCATGTTTTTAGCTACCGA 59.738 43.478 0.00 0.00 0.00 4.69
2085 2405 3.926527 CGCTTTACTAATGTGTCTGCAGA 59.073 43.478 13.74 13.74 0.00 4.26
2575 2895 7.392953 TCACTGCTCATTATGTTTGTTCCATAA 59.607 33.333 0.00 0.00 38.68 1.90
2586 2906 8.647143 ATGTTTGTTCCATAACTTTTCTTGTG 57.353 30.769 0.00 0.00 36.51 3.33
2625 2945 0.170561 CTTGTGATGCCTGCTCTTGC 59.829 55.000 0.00 0.00 40.20 4.01
2760 3081 3.006940 TGCTATCCGCACAACCTTTTAG 58.993 45.455 0.00 0.00 45.47 1.85
2768 3089 5.010922 TCCGCACAACCTTTTAGTCTTACTA 59.989 40.000 0.00 0.00 0.00 1.82
2769 3090 5.347907 CCGCACAACCTTTTAGTCTTACTAG 59.652 44.000 0.00 0.00 31.47 2.57
2770 3091 5.347907 CGCACAACCTTTTAGTCTTACTAGG 59.652 44.000 0.00 0.00 31.47 3.02
2771 3092 6.228995 GCACAACCTTTTAGTCTTACTAGGT 58.771 40.000 0.00 0.00 30.72 3.08
2772 3093 6.368243 GCACAACCTTTTAGTCTTACTAGGTC 59.632 42.308 0.00 0.00 28.87 3.85
2773 3094 6.872547 CACAACCTTTTAGTCTTACTAGGTCC 59.127 42.308 0.00 0.00 28.87 4.46
2774 3095 6.786461 ACAACCTTTTAGTCTTACTAGGTCCT 59.214 38.462 0.00 0.00 28.87 3.85
2775 3096 7.952368 ACAACCTTTTAGTCTTACTAGGTCCTA 59.048 37.037 0.00 0.00 28.87 2.94
2776 3097 8.979534 CAACCTTTTAGTCTTACTAGGTCCTAT 58.020 37.037 0.00 0.00 28.87 2.57
2778 3099 9.865152 ACCTTTTAGTCTTACTAGGTCCTATAG 57.135 37.037 0.00 0.00 31.47 1.31
2792 3113 9.593134 CTAGGTCCTATAGAATATGTGAATTGC 57.407 37.037 0.00 0.00 0.00 3.56
2793 3114 7.977818 AGGTCCTATAGAATATGTGAATTGCA 58.022 34.615 0.00 0.00 0.00 4.08
2805 3126 4.019919 GTGAATTGCACGATGTATTGCT 57.980 40.909 0.00 0.00 39.62 3.91
2806 3127 4.031028 GTGAATTGCACGATGTATTGCTC 58.969 43.478 0.00 0.00 39.62 4.26
2807 3128 3.940852 TGAATTGCACGATGTATTGCTCT 59.059 39.130 0.00 0.00 39.62 4.09
2808 3129 4.034394 TGAATTGCACGATGTATTGCTCTC 59.966 41.667 0.00 0.00 39.62 3.20
2809 3130 1.559831 TGCACGATGTATTGCTCTCG 58.440 50.000 0.00 0.00 39.62 4.04
2810 3131 1.135112 TGCACGATGTATTGCTCTCGT 60.135 47.619 0.00 0.00 44.48 4.18
2812 3133 1.560923 ACGATGTATTGCTCTCGTGC 58.439 50.000 0.00 0.00 42.26 5.34
2813 3134 1.135112 ACGATGTATTGCTCTCGTGCA 60.135 47.619 0.00 0.00 42.26 4.57
2814 3135 2.130395 CGATGTATTGCTCTCGTGCAT 58.870 47.619 0.00 0.00 42.96 3.96
2815 3136 3.243401 ACGATGTATTGCTCTCGTGCATA 60.243 43.478 0.00 0.00 42.26 3.14
2816 3137 3.363128 CGATGTATTGCTCTCGTGCATAG 59.637 47.826 0.00 0.00 42.96 2.23
2817 3138 3.097877 TGTATTGCTCTCGTGCATAGG 57.902 47.619 0.00 0.00 42.96 2.57
2818 3139 1.795286 GTATTGCTCTCGTGCATAGGC 59.205 52.381 0.00 0.00 42.96 3.93
2835 3156 7.624706 GCATAGGCACGTATATATGATGTAC 57.375 40.000 8.98 0.00 40.72 2.90
2836 3157 7.200455 GCATAGGCACGTATATATGATGTACA 58.800 38.462 8.98 0.00 40.72 2.90
2837 3158 7.704899 GCATAGGCACGTATATATGATGTACAA 59.295 37.037 8.98 0.00 40.72 2.41
2838 3159 9.581099 CATAGGCACGTATATATGATGTACAAA 57.419 33.333 8.98 0.00 0.00 2.83
2839 3160 9.803315 ATAGGCACGTATATATGATGTACAAAG 57.197 33.333 8.98 0.00 0.00 2.77
2840 3161 7.097192 AGGCACGTATATATGATGTACAAAGG 58.903 38.462 8.98 0.00 0.00 3.11
2841 3162 6.872020 GGCACGTATATATGATGTACAAAGGT 59.128 38.462 8.98 0.00 0.00 3.50
2842 3163 7.148639 GGCACGTATATATGATGTACAAAGGTG 60.149 40.741 8.98 2.31 0.00 4.00
2843 3164 7.148639 GCACGTATATATGATGTACAAAGGTGG 60.149 40.741 8.98 0.00 0.00 4.61
2844 3165 7.330946 CACGTATATATGATGTACAAAGGTGGG 59.669 40.741 8.98 0.00 0.00 4.61
2845 3166 6.312918 CGTATATATGATGTACAAAGGTGGGC 59.687 42.308 0.00 0.00 0.00 5.36
2846 3167 2.143876 ATGATGTACAAAGGTGGGCC 57.856 50.000 0.00 0.00 0.00 5.80
2847 3168 0.774276 TGATGTACAAAGGTGGGCCA 59.226 50.000 0.00 0.00 37.19 5.36
2848 3169 1.173913 GATGTACAAAGGTGGGCCAC 58.826 55.000 28.69 28.69 37.19 5.01
2849 3170 0.608035 ATGTACAAAGGTGGGCCACG 60.608 55.000 29.18 18.12 34.83 4.94
2850 3171 1.969589 GTACAAAGGTGGGCCACGG 60.970 63.158 29.18 20.03 34.83 4.94
2851 3172 2.148052 TACAAAGGTGGGCCACGGA 61.148 57.895 29.18 10.44 34.83 4.69
2852 3173 2.400269 TACAAAGGTGGGCCACGGAC 62.400 60.000 29.18 16.36 34.83 4.79
2853 3174 4.280019 AAAGGTGGGCCACGGACC 62.280 66.667 29.18 16.48 45.60 4.46
2857 3178 3.948719 GTGGGCCACGGACCTCAA 61.949 66.667 22.83 0.00 45.59 3.02
2858 3179 3.948719 TGGGCCACGGACCTCAAC 61.949 66.667 10.00 0.00 45.59 3.18
2859 3180 3.637273 GGGCCACGGACCTCAACT 61.637 66.667 4.39 0.00 41.04 3.16
2860 3181 2.288025 GGGCCACGGACCTCAACTA 61.288 63.158 4.39 0.00 41.04 2.24
2861 3182 1.623542 GGGCCACGGACCTCAACTAT 61.624 60.000 4.39 0.00 41.04 2.12
2862 3183 1.117150 GGCCACGGACCTCAACTATA 58.883 55.000 0.00 0.00 0.00 1.31
2863 3184 1.202498 GGCCACGGACCTCAACTATAC 60.202 57.143 0.00 0.00 0.00 1.47
2864 3185 1.479323 GCCACGGACCTCAACTATACA 59.521 52.381 0.00 0.00 0.00 2.29
2865 3186 2.093869 GCCACGGACCTCAACTATACAA 60.094 50.000 0.00 0.00 0.00 2.41
2866 3187 3.782046 CCACGGACCTCAACTATACAAG 58.218 50.000 0.00 0.00 0.00 3.16
2867 3188 3.430374 CCACGGACCTCAACTATACAAGG 60.430 52.174 0.00 0.00 34.94 3.61
2868 3189 3.446161 CACGGACCTCAACTATACAAGGA 59.554 47.826 0.00 0.00 32.99 3.36
2869 3190 4.081862 CACGGACCTCAACTATACAAGGAA 60.082 45.833 0.00 0.00 32.99 3.36
2870 3191 4.081807 ACGGACCTCAACTATACAAGGAAC 60.082 45.833 0.00 0.00 32.99 3.62
2872 3193 5.359009 CGGACCTCAACTATACAAGGAACTA 59.641 44.000 0.00 0.00 38.49 2.24
2873 3194 6.459848 CGGACCTCAACTATACAAGGAACTAG 60.460 46.154 0.00 0.00 38.49 2.57
2874 3195 6.183360 GGACCTCAACTATACAAGGAACTAGG 60.183 46.154 0.00 0.00 38.49 3.02
2875 3196 6.500336 ACCTCAACTATACAAGGAACTAGGA 58.500 40.000 0.00 0.00 38.49 2.94
2876 3197 6.608002 ACCTCAACTATACAAGGAACTAGGAG 59.392 42.308 0.00 0.00 38.49 3.69
2877 3198 6.041069 CCTCAACTATACAAGGAACTAGGAGG 59.959 46.154 0.00 0.00 38.49 4.30
2878 3199 5.363005 TCAACTATACAAGGAACTAGGAGGC 59.637 44.000 0.00 0.00 38.49 4.70
2879 3200 3.890147 ACTATACAAGGAACTAGGAGGCG 59.110 47.826 0.00 0.00 38.49 5.52
2880 3201 1.481871 TACAAGGAACTAGGAGGCGG 58.518 55.000 0.00 0.00 38.49 6.13
2881 3202 1.265454 ACAAGGAACTAGGAGGCGGG 61.265 60.000 0.00 0.00 38.49 6.13
2882 3203 2.368011 AAGGAACTAGGAGGCGGGC 61.368 63.158 0.00 0.00 38.49 6.13
2883 3204 3.862991 GGAACTAGGAGGCGGGCC 61.863 72.222 0.18 0.18 0.00 5.80
2884 3205 3.862991 GAACTAGGAGGCGGGCCC 61.863 72.222 13.57 13.57 36.58 5.80
2885 3206 4.733725 AACTAGGAGGCGGGCCCA 62.734 66.667 24.92 0.00 36.58 5.36
2886 3207 4.733725 ACTAGGAGGCGGGCCCAA 62.734 66.667 24.92 0.00 36.58 4.12
2887 3208 3.171388 CTAGGAGGCGGGCCCAAT 61.171 66.667 24.92 6.29 36.58 3.16
2888 3209 1.841556 CTAGGAGGCGGGCCCAATA 60.842 63.158 24.92 3.53 36.58 1.90
2889 3210 2.113243 CTAGGAGGCGGGCCCAATAC 62.113 65.000 24.92 7.37 36.58 1.89
2890 3211 2.900269 TAGGAGGCGGGCCCAATACA 62.900 60.000 24.92 0.00 36.58 2.29
2891 3212 2.516225 GAGGCGGGCCCAATACAC 60.516 66.667 24.92 4.31 36.58 2.90
2892 3213 3.334891 AGGCGGGCCCAATACACA 61.335 61.111 24.92 0.00 36.58 3.72
2893 3214 2.361865 GGCGGGCCCAATACACAA 60.362 61.111 24.92 0.00 0.00 3.33
2894 3215 1.756561 GGCGGGCCCAATACACAAT 60.757 57.895 24.92 0.00 0.00 2.71
2895 3216 0.466555 GGCGGGCCCAATACACAATA 60.467 55.000 24.92 0.00 0.00 1.90
2896 3217 1.616159 GCGGGCCCAATACACAATAT 58.384 50.000 24.92 0.00 0.00 1.28
2897 3218 1.269448 GCGGGCCCAATACACAATATG 59.731 52.381 24.92 0.60 0.00 1.78
2898 3219 1.269448 CGGGCCCAATACACAATATGC 59.731 52.381 24.92 0.00 0.00 3.14
2899 3220 2.315176 GGGCCCAATACACAATATGCA 58.685 47.619 19.95 0.00 0.00 3.96
2900 3221 2.035832 GGGCCCAATACACAATATGCAC 59.964 50.000 19.95 0.00 0.00 4.57
2901 3222 2.692557 GGCCCAATACACAATATGCACA 59.307 45.455 0.00 0.00 0.00 4.57
2902 3223 3.321682 GGCCCAATACACAATATGCACAT 59.678 43.478 0.00 0.00 0.00 3.21
2903 3224 4.522405 GGCCCAATACACAATATGCACATA 59.478 41.667 0.00 0.00 0.00 2.29
2904 3225 5.010516 GGCCCAATACACAATATGCACATAA 59.989 40.000 0.00 0.00 0.00 1.90
2905 3226 5.920273 GCCCAATACACAATATGCACATAAC 59.080 40.000 0.00 0.00 0.00 1.89
2906 3227 6.460814 GCCCAATACACAATATGCACATAACA 60.461 38.462 0.00 0.00 0.00 2.41
2907 3228 6.917477 CCCAATACACAATATGCACATAACAC 59.083 38.462 0.00 0.00 0.00 3.32
2908 3229 7.416101 CCCAATACACAATATGCACATAACACA 60.416 37.037 0.00 0.00 0.00 3.72
2909 3230 8.136800 CCAATACACAATATGCACATAACACAT 58.863 33.333 0.00 0.00 0.00 3.21
2914 3235 9.559732 ACACAATATGCACATAACACATATACT 57.440 29.630 0.00 0.00 36.28 2.12
2916 3237 9.777297 ACAATATGCACATAACACATATACTCA 57.223 29.630 0.00 0.00 36.28 3.41
2942 3263 5.746245 CAGCTCCTACAAGATTCTAGTTTCG 59.254 44.000 0.00 0.00 0.00 3.46
2954 3275 4.928661 TCTAGTTTCGAGAAAGCAATGC 57.071 40.909 0.00 0.00 0.00 3.56
3047 3368 7.094377 GCTCTAAAATTGTTCAATGTAGGTGGA 60.094 37.037 12.44 0.00 0.00 4.02
3134 3455 5.514500 ACATTTGGTACCCTGTTGTCTAT 57.486 39.130 10.07 0.00 0.00 1.98
3135 3456 5.887754 ACATTTGGTACCCTGTTGTCTATT 58.112 37.500 10.07 0.00 0.00 1.73
3173 3494 3.118371 ACAAATCTAGTTTAGGCGGGGAG 60.118 47.826 0.00 0.00 0.00 4.30
3364 4003 3.388024 AGCCAACCCTTTCTTTCCTTTTC 59.612 43.478 0.00 0.00 0.00 2.29
3369 4008 6.884295 CCAACCCTTTCTTTCCTTTTCTTTTT 59.116 34.615 0.00 0.00 0.00 1.94
3727 4366 3.251484 TCAAGTCAAGGTGGAGGAGAAT 58.749 45.455 0.00 0.00 0.00 2.40
3835 4474 0.872449 AGGGGAAGGGTATCCGGTAT 59.128 55.000 0.00 0.00 40.62 2.73
3936 4575 9.103048 CATTTCATACGTACTTTTGTTCTGTTC 57.897 33.333 0.00 0.00 0.00 3.18
3943 4582 3.467803 ACTTTTGTTCTGTTCTCCCTCG 58.532 45.455 0.00 0.00 0.00 4.63
3992 4631 0.881796 GTTCCTTAGCCCTTGCACAC 59.118 55.000 0.00 0.00 41.13 3.82
4025 4664 7.703328 AGAAAAATGTCACAGTTTACGTCATT 58.297 30.769 3.17 0.00 30.35 2.57
4032 4671 4.924462 TCACAGTTTACGTCATTGCGATAA 59.076 37.500 0.00 0.00 35.59 1.75
4148 4802 3.009723 ACGGCAAACACTATGAATGGAG 58.990 45.455 0.00 0.00 0.00 3.86
4149 4803 2.223340 CGGCAAACACTATGAATGGAGC 60.223 50.000 0.00 0.00 0.00 4.70
4150 4804 2.754552 GGCAAACACTATGAATGGAGCA 59.245 45.455 0.00 0.00 0.00 4.26
4151 4805 3.193267 GGCAAACACTATGAATGGAGCAA 59.807 43.478 0.00 0.00 0.00 3.91
4152 4806 4.321899 GGCAAACACTATGAATGGAGCAAA 60.322 41.667 0.00 0.00 0.00 3.68
4153 4807 4.622740 GCAAACACTATGAATGGAGCAAAC 59.377 41.667 0.00 0.00 0.00 2.93
4154 4808 5.771469 CAAACACTATGAATGGAGCAAACA 58.229 37.500 0.00 0.00 0.00 2.83
4155 4809 5.376854 AACACTATGAATGGAGCAAACAC 57.623 39.130 0.00 0.00 0.00 3.32
4156 4810 4.655963 ACACTATGAATGGAGCAAACACT 58.344 39.130 0.00 0.00 0.00 3.55
4157 4811 5.804639 ACACTATGAATGGAGCAAACACTA 58.195 37.500 0.00 0.00 0.00 2.74
4158 4812 6.418101 ACACTATGAATGGAGCAAACACTAT 58.582 36.000 0.00 0.00 0.00 2.12
4159 4813 6.317140 ACACTATGAATGGAGCAAACACTATG 59.683 38.462 0.00 0.00 0.00 2.23
4160 4814 6.539826 CACTATGAATGGAGCAAACACTATGA 59.460 38.462 0.00 0.00 0.00 2.15
4161 4815 7.066163 CACTATGAATGGAGCAAACACTATGAA 59.934 37.037 0.00 0.00 0.00 2.57
4162 4816 7.776969 ACTATGAATGGAGCAAACACTATGAAT 59.223 33.333 0.00 0.00 0.00 2.57
4163 4817 6.198650 TGAATGGAGCAAACACTATGAATG 57.801 37.500 0.00 0.00 0.00 2.67
4164 4818 5.125900 TGAATGGAGCAAACACTATGAATGG 59.874 40.000 0.00 0.00 0.00 3.16
4165 4819 4.299586 TGGAGCAAACACTATGAATGGA 57.700 40.909 0.00 0.00 0.00 3.41
4244 4898 2.997897 ACTGCACGGAGAGGACCC 60.998 66.667 0.00 0.00 0.00 4.46
4346 5001 1.979693 GTGGCGTGGACTCCTCTCT 60.980 63.158 0.00 0.00 0.00 3.10
4347 5002 1.679305 TGGCGTGGACTCCTCTCTC 60.679 63.158 0.00 0.00 0.00 3.20
4388 5043 2.749682 ACTGCCAGCGGTGAATGA 59.250 55.556 17.83 0.00 33.73 2.57
4565 5225 1.988846 TGTGGGATACATGTTGGGTCA 59.011 47.619 2.30 0.00 33.42 4.02
4597 5257 3.762247 CCAAATGTGGCGCCCCAG 61.762 66.667 26.77 6.84 43.18 4.45
4598 5258 4.440127 CAAATGTGGCGCCCCAGC 62.440 66.667 26.77 12.20 43.18 4.85
4623 5283 1.808945 ACGAAAGAGAATGCTTGGCTG 59.191 47.619 0.00 0.00 0.00 4.85
4639 5299 4.392921 TGGCTGACTTATGAGCTTCTAC 57.607 45.455 0.00 0.00 35.42 2.59
4641 5301 3.181485 GGCTGACTTATGAGCTTCTACGT 60.181 47.826 0.00 0.00 35.42 3.57
4644 5304 4.659088 TGACTTATGAGCTTCTACGTTCG 58.341 43.478 0.00 0.00 0.00 3.95
4651 5311 0.912528 GCTTCTACGTTCGCCTTACG 59.087 55.000 0.00 0.00 44.20 3.18
4703 5363 8.691661 AAAAAGTAGAGCCTTATGACTTTCAA 57.308 30.769 0.00 0.00 38.94 2.69
4704 5364 8.691661 AAAAGTAGAGCCTTATGACTTTCAAA 57.308 30.769 0.00 0.00 38.94 2.69
4705 5365 8.691661 AAAGTAGAGCCTTATGACTTTCAAAA 57.308 30.769 0.00 0.00 35.92 2.44
4706 5366 7.913674 AGTAGAGCCTTATGACTTTCAAAAG 57.086 36.000 0.97 0.97 41.73 2.27
4749 5409 3.686916 AGAGGACAAGCAAGGTCTAAC 57.313 47.619 0.00 0.00 35.61 2.34
4750 5410 2.303311 AGAGGACAAGCAAGGTCTAACC 59.697 50.000 0.00 0.00 38.99 2.85
4766 5426 4.037927 TCTAACCTTGGGGGAGTTGATAG 58.962 47.826 0.00 0.00 38.76 2.08
4783 5443 9.827411 GAGTTGATAGGTCTGTATTTTGTTTTC 57.173 33.333 0.00 0.00 0.00 2.29
4787 5447 8.664798 TGATAGGTCTGTATTTTGTTTTCATCG 58.335 33.333 0.00 0.00 0.00 3.84
4802 5462 2.912771 TCATCGACACCTCTCTCTCTC 58.087 52.381 0.00 0.00 0.00 3.20
4803 5463 2.503765 TCATCGACACCTCTCTCTCTCT 59.496 50.000 0.00 0.00 0.00 3.10
4805 5465 4.162509 TCATCGACACCTCTCTCTCTCTAA 59.837 45.833 0.00 0.00 0.00 2.10
4806 5466 4.764050 TCGACACCTCTCTCTCTCTAAT 57.236 45.455 0.00 0.00 0.00 1.73
4860 5520 1.174783 TGAGGACAAGCGAGGTCTAC 58.825 55.000 5.63 2.21 35.61 2.59
4866 5526 1.961394 ACAAGCGAGGTCTACACTTGA 59.039 47.619 7.95 0.00 40.06 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.471684 GGCAGCTTCAATGGTCTCTTG 59.528 52.381 0.00 0.00 0.00 3.02
116 117 2.906458 CGGCATCCTGGCTCTCTT 59.094 61.111 0.00 0.00 41.25 2.85
190 217 0.394352 CACCTTTCCTTGCCCGCTAT 60.394 55.000 0.00 0.00 0.00 2.97
203 230 1.692411 GTTCAAGCACTCCCACCTTT 58.308 50.000 0.00 0.00 0.00 3.11
229 256 4.980805 TGGAACGCTGGTCGGCAC 62.981 66.667 2.55 0.00 43.86 5.01
315 344 1.344438 AGAGCGGACACACATCTTCAA 59.656 47.619 0.00 0.00 0.00 2.69
325 354 2.808543 ACAAAATCTTGAGAGCGGACAC 59.191 45.455 0.00 0.00 36.33 3.67
328 357 2.226437 GCAACAAAATCTTGAGAGCGGA 59.774 45.455 0.00 0.00 36.33 5.54
336 386 3.616379 ACAAACGGTGCAACAAAATCTTG 59.384 39.130 0.98 0.00 39.98 3.02
470 537 9.646522 AATAAAGGTTCCACATAGCAAATATCT 57.353 29.630 0.00 0.00 0.00 1.98
556 647 8.962679 TGTAAAGTTTTATCACAGGTCTTTTGT 58.037 29.630 0.00 0.00 0.00 2.83
557 648 9.796120 TTGTAAAGTTTTATCACAGGTCTTTTG 57.204 29.630 0.00 0.00 0.00 2.44
561 652 9.403583 TCTTTTGTAAAGTTTTATCACAGGTCT 57.596 29.630 0.00 0.00 0.00 3.85
613 704 1.951602 GTAGGTCTTGCGGGTTTGTTT 59.048 47.619 0.00 0.00 0.00 2.83
614 705 1.601166 GTAGGTCTTGCGGGTTTGTT 58.399 50.000 0.00 0.00 0.00 2.83
615 706 0.250597 GGTAGGTCTTGCGGGTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
623 715 2.399356 GCTTGGCGGTAGGTCTTGC 61.399 63.158 0.00 0.00 0.00 4.01
672 766 2.992689 TACCGCCGCAAGTCTGGA 60.993 61.111 0.00 0.00 0.00 3.86
674 768 2.509336 CCTACCGCCGCAAGTCTG 60.509 66.667 0.00 0.00 0.00 3.51
763 857 1.982938 GCTCCACGGTAGGGTCAGT 60.983 63.158 0.00 0.00 0.00 3.41
830 930 5.317808 TGGTAAACAAATTCGGGATCTTGA 58.682 37.500 0.00 0.00 0.00 3.02
831 931 5.637006 TGGTAAACAAATTCGGGATCTTG 57.363 39.130 0.00 0.00 0.00 3.02
832 932 6.658188 TTTGGTAAACAAATTCGGGATCTT 57.342 33.333 0.00 0.00 43.81 2.40
861 964 8.177119 AGACACAGGCTAAATTTCATGTTTTA 57.823 30.769 0.00 0.00 0.00 1.52
900 1003 0.182299 CAGAAGATGGGGGAAGAGGC 59.818 60.000 0.00 0.00 0.00 4.70
912 1015 9.620259 GTTTCTTATCCTTTATCCACAGAAGAT 57.380 33.333 0.00 0.00 0.00 2.40
950 1059 3.043713 TGTGCGCGCTTCTTCCTG 61.044 61.111 33.29 0.00 0.00 3.86
952 1061 4.090057 GGTGTGCGCGCTTCTTCC 62.090 66.667 33.29 23.21 0.00 3.46
1048 1163 3.133003 ACATCGATGAGGGGTGTAGAAAG 59.867 47.826 31.33 0.00 0.00 2.62
1049 1164 3.104512 ACATCGATGAGGGGTGTAGAAA 58.895 45.455 31.33 0.00 0.00 2.52
1050 1165 2.693591 GACATCGATGAGGGGTGTAGAA 59.306 50.000 31.33 0.00 0.00 2.10
1170 1285 2.292267 GATTGCGAGTGAACCATCCAT 58.708 47.619 0.00 0.00 0.00 3.41
1313 1430 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1316 1433 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1317 1434 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1318 1435 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1319 1436 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1320 1437 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
1321 1438 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
1322 1439 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
1325 1442 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
1326 1443 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
1327 1444 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
1328 1445 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
1329 1446 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
1330 1447 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
1331 1448 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
1332 1449 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
1333 1450 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
1368 1485 9.793259 TCCAAAAATAAGTGTCTTGAGATTAGT 57.207 29.630 0.00 0.00 0.00 2.24
1370 1487 8.717821 CGTCCAAAAATAAGTGTCTTGAGATTA 58.282 33.333 0.00 0.00 0.00 1.75
1371 1488 7.308589 CCGTCCAAAAATAAGTGTCTTGAGATT 60.309 37.037 0.00 0.00 0.00 2.40
1372 1489 6.149474 CCGTCCAAAAATAAGTGTCTTGAGAT 59.851 38.462 0.00 0.00 0.00 2.75
1373 1490 5.468746 CCGTCCAAAAATAAGTGTCTTGAGA 59.531 40.000 0.00 0.00 0.00 3.27
1374 1491 5.468746 TCCGTCCAAAAATAAGTGTCTTGAG 59.531 40.000 0.00 0.00 0.00 3.02
1375 1492 5.369833 TCCGTCCAAAAATAAGTGTCTTGA 58.630 37.500 0.00 0.00 0.00 3.02
1376 1493 5.334879 CCTCCGTCCAAAAATAAGTGTCTTG 60.335 44.000 0.00 0.00 0.00 3.02
1377 1494 4.760204 CCTCCGTCCAAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
1378 1495 4.324267 CCTCCGTCCAAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
1379 1496 3.439129 CCCTCCGTCCAAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
1380 1497 3.073356 TCCCTCCGTCCAAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
1381 1498 3.681593 TCCCTCCGTCCAAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
1382 1499 3.329814 ACTCCCTCCGTCCAAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
1383 1500 3.951663 ACTCCCTCCGTCCAAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
1384 1501 4.533311 ACTACTCCCTCCGTCCAAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
1385 1502 4.098894 ACTACTCCCTCCGTCCAAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1386 1503 2.910977 ACTACTCCCTCCGTCCAAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1387 1504 2.332117 ACTACTCCCTCCGTCCAAAAA 58.668 47.619 0.00 0.00 0.00 1.94
1388 1505 2.019807 ACTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44
1389 1506 2.905415 TACTACTCCCTCCGTCCAAA 57.095 50.000 0.00 0.00 0.00 3.28
1390 1507 2.042162 ACTTACTACTCCCTCCGTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
1391 1508 1.637553 ACTTACTACTCCCTCCGTCCA 59.362 52.381 0.00 0.00 0.00 4.02
1392 1509 2.433662 ACTTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
1393 1510 3.350833 TGAACTTACTACTCCCTCCGTC 58.649 50.000 0.00 0.00 0.00 4.79
1394 1511 3.354467 CTGAACTTACTACTCCCTCCGT 58.646 50.000 0.00 0.00 0.00 4.69
1395 1512 2.099427 GCTGAACTTACTACTCCCTCCG 59.901 54.545 0.00 0.00 0.00 4.63
1396 1513 2.099427 CGCTGAACTTACTACTCCCTCC 59.901 54.545 0.00 0.00 0.00 4.30
1397 1514 2.754002 ACGCTGAACTTACTACTCCCTC 59.246 50.000 0.00 0.00 0.00 4.30
1398 1515 2.805194 ACGCTGAACTTACTACTCCCT 58.195 47.619 0.00 0.00 0.00 4.20
1399 1516 3.193056 AGAACGCTGAACTTACTACTCCC 59.807 47.826 0.00 0.00 0.00 4.30
1400 1517 4.156373 AGAGAACGCTGAACTTACTACTCC 59.844 45.833 0.00 0.00 0.00 3.85
1401 1518 5.090083 CAGAGAACGCTGAACTTACTACTC 58.910 45.833 0.00 0.00 38.14 2.59
1402 1519 4.760715 TCAGAGAACGCTGAACTTACTACT 59.239 41.667 5.84 0.00 41.65 2.57
1403 1520 4.852650 GTCAGAGAACGCTGAACTTACTAC 59.147 45.833 9.53 0.00 45.69 2.73
1455 1572 2.610438 ACAATGAGCAAAGTCCCCAT 57.390 45.000 0.00 0.00 0.00 4.00
1644 1763 3.471430 TCATGATCCACCCCATTTTGT 57.529 42.857 0.00 0.00 0.00 2.83
1887 2207 8.638685 TGCTCGGTAGTAACAAAATAAGATAC 57.361 34.615 0.00 0.00 0.00 2.24
1888 2208 9.309516 CTTGCTCGGTAGTAACAAAATAAGATA 57.690 33.333 0.00 0.00 0.00 1.98
1889 2209 8.038944 TCTTGCTCGGTAGTAACAAAATAAGAT 58.961 33.333 0.00 0.00 0.00 2.40
1920 2240 1.008449 AGCATACCAGGTACCACTCCT 59.992 52.381 15.94 0.00 35.45 3.69
1931 2251 3.845781 ACCATTCACCTAGCATACCAG 57.154 47.619 0.00 0.00 0.00 4.00
2085 2405 9.712359 GTCAAAAATAAGAACACGTTACTTTCT 57.288 29.630 4.43 0.00 0.00 2.52
2169 2489 9.545105 TTCTTGAATTGCTGTTTTATTTCACAT 57.455 25.926 0.00 0.00 0.00 3.21
2209 2529 5.168569 CGAAGAAGTATGCCTTGTGACTTA 58.831 41.667 0.00 0.00 32.37 2.24
2575 2895 5.258051 TCACTTTGGGTACACAAGAAAAGT 58.742 37.500 11.03 8.80 38.13 2.66
2625 2945 6.431852 TGATGGCTCATATATGTGAATTGTGG 59.568 38.462 16.98 0.00 0.00 4.17
2689 3010 5.122239 CACTGGTGGTATCACAGTGTAATTG 59.878 44.000 21.14 4.81 45.32 2.32
2768 3089 7.880195 GTGCAATTCACATATTCTATAGGACCT 59.120 37.037 0.00 0.00 44.98 3.85
2769 3090 7.148573 CGTGCAATTCACATATTCTATAGGACC 60.149 40.741 0.00 0.00 45.92 4.46
2770 3091 7.598869 TCGTGCAATTCACATATTCTATAGGAC 59.401 37.037 0.00 0.00 45.92 3.85
2771 3092 7.666623 TCGTGCAATTCACATATTCTATAGGA 58.333 34.615 0.00 0.00 45.92 2.94
2772 3093 7.889589 TCGTGCAATTCACATATTCTATAGG 57.110 36.000 0.00 0.00 45.92 2.57
2773 3094 8.929746 ACATCGTGCAATTCACATATTCTATAG 58.070 33.333 0.00 0.00 45.92 1.31
2774 3095 8.831715 ACATCGTGCAATTCACATATTCTATA 57.168 30.769 0.00 0.00 45.92 1.31
2775 3096 7.734924 ACATCGTGCAATTCACATATTCTAT 57.265 32.000 0.00 0.00 45.92 1.98
2776 3097 8.831715 ATACATCGTGCAATTCACATATTCTA 57.168 30.769 0.00 0.00 45.92 2.10
2777 3098 7.734924 ATACATCGTGCAATTCACATATTCT 57.265 32.000 0.00 0.00 45.92 2.40
2778 3099 7.149080 GCAATACATCGTGCAATTCACATATTC 60.149 37.037 0.00 0.00 45.92 1.75
2779 3100 6.638063 GCAATACATCGTGCAATTCACATATT 59.362 34.615 0.00 0.00 45.92 1.28
2780 3101 6.016860 AGCAATACATCGTGCAATTCACATAT 60.017 34.615 0.00 0.59 45.92 1.78
2781 3102 5.296531 AGCAATACATCGTGCAATTCACATA 59.703 36.000 0.00 0.00 45.92 2.29
2782 3103 4.096833 AGCAATACATCGTGCAATTCACAT 59.903 37.500 0.00 0.83 45.92 3.21
2783 3104 3.439825 AGCAATACATCGTGCAATTCACA 59.560 39.130 0.00 0.00 45.92 3.58
2784 3105 4.019919 AGCAATACATCGTGCAATTCAC 57.980 40.909 0.00 0.00 43.42 3.18
2785 3106 3.940852 AGAGCAATACATCGTGCAATTCA 59.059 39.130 0.00 0.00 43.42 2.57
2786 3107 4.521943 GAGAGCAATACATCGTGCAATTC 58.478 43.478 0.00 0.00 43.42 2.17
2787 3108 3.001634 CGAGAGCAATACATCGTGCAATT 59.998 43.478 0.00 0.00 43.42 2.32
2788 3109 2.541346 CGAGAGCAATACATCGTGCAAT 59.459 45.455 0.00 0.00 43.42 3.56
2789 3110 1.926510 CGAGAGCAATACATCGTGCAA 59.073 47.619 0.00 0.00 43.42 4.08
2790 3111 1.135112 ACGAGAGCAATACATCGTGCA 60.135 47.619 0.00 0.00 45.83 4.57
2791 3112 1.560923 ACGAGAGCAATACATCGTGC 58.439 50.000 0.00 0.00 45.83 5.34
2794 3115 1.559831 TGCACGAGAGCAATACATCG 58.440 50.000 0.00 0.00 42.46 3.84
2811 3132 7.200455 TGTACATCATATATACGTGCCTATGC 58.800 38.462 0.00 0.00 38.26 3.14
2812 3133 9.581099 TTTGTACATCATATATACGTGCCTATG 57.419 33.333 0.00 2.62 0.00 2.23
2813 3134 9.803315 CTTTGTACATCATATATACGTGCCTAT 57.197 33.333 0.00 0.00 0.00 2.57
2814 3135 8.248253 CCTTTGTACATCATATATACGTGCCTA 58.752 37.037 0.00 0.00 0.00 3.93
2815 3136 7.097192 CCTTTGTACATCATATATACGTGCCT 58.903 38.462 0.00 0.00 0.00 4.75
2816 3137 6.872020 ACCTTTGTACATCATATATACGTGCC 59.128 38.462 0.00 0.00 0.00 5.01
2817 3138 7.148639 CCACCTTTGTACATCATATATACGTGC 60.149 40.741 0.00 0.00 0.00 5.34
2818 3139 7.330946 CCCACCTTTGTACATCATATATACGTG 59.669 40.741 0.00 0.00 0.00 4.49
2819 3140 7.383687 CCCACCTTTGTACATCATATATACGT 58.616 38.462 0.00 0.00 0.00 3.57
2820 3141 6.312918 GCCCACCTTTGTACATCATATATACG 59.687 42.308 0.00 0.00 0.00 3.06
2821 3142 6.598064 GGCCCACCTTTGTACATCATATATAC 59.402 42.308 0.00 0.00 0.00 1.47
2822 3143 6.273495 TGGCCCACCTTTGTACATCATATATA 59.727 38.462 0.00 0.00 36.63 0.86
2823 3144 5.074377 TGGCCCACCTTTGTACATCATATAT 59.926 40.000 0.00 0.00 36.63 0.86
2824 3145 4.413851 TGGCCCACCTTTGTACATCATATA 59.586 41.667 0.00 0.00 36.63 0.86
2825 3146 3.204158 TGGCCCACCTTTGTACATCATAT 59.796 43.478 0.00 0.00 36.63 1.78
2826 3147 2.578480 TGGCCCACCTTTGTACATCATA 59.422 45.455 0.00 0.00 36.63 2.15
2827 3148 1.357420 TGGCCCACCTTTGTACATCAT 59.643 47.619 0.00 0.00 36.63 2.45
2828 3149 0.774276 TGGCCCACCTTTGTACATCA 59.226 50.000 0.00 0.00 36.63 3.07
2829 3150 1.173913 GTGGCCCACCTTTGTACATC 58.826 55.000 1.17 0.00 36.63 3.06
2830 3151 0.608035 CGTGGCCCACCTTTGTACAT 60.608 55.000 8.62 0.00 36.63 2.29
2831 3152 1.228003 CGTGGCCCACCTTTGTACA 60.228 57.895 8.62 0.00 36.63 2.90
2832 3153 1.969589 CCGTGGCCCACCTTTGTAC 60.970 63.158 8.62 0.00 36.63 2.90
2833 3154 2.148052 TCCGTGGCCCACCTTTGTA 61.148 57.895 8.62 0.00 36.63 2.41
2834 3155 3.494254 TCCGTGGCCCACCTTTGT 61.494 61.111 8.62 0.00 36.63 2.83
2835 3156 2.983592 GTCCGTGGCCCACCTTTG 60.984 66.667 8.62 0.00 36.63 2.77
2836 3157 4.280019 GGTCCGTGGCCCACCTTT 62.280 66.667 8.62 0.00 36.63 3.11
2840 3161 3.948719 TTGAGGTCCGTGGCCCAC 61.949 66.667 2.98 2.98 0.00 4.61
2841 3162 3.948719 GTTGAGGTCCGTGGCCCA 61.949 66.667 0.00 0.00 0.00 5.36
2842 3163 1.623542 ATAGTTGAGGTCCGTGGCCC 61.624 60.000 0.00 0.00 0.00 5.80
2843 3164 1.117150 TATAGTTGAGGTCCGTGGCC 58.883 55.000 0.00 0.00 0.00 5.36
2844 3165 1.479323 TGTATAGTTGAGGTCCGTGGC 59.521 52.381 0.00 0.00 0.00 5.01
2845 3166 3.430374 CCTTGTATAGTTGAGGTCCGTGG 60.430 52.174 0.00 0.00 0.00 4.94
2846 3167 3.446161 TCCTTGTATAGTTGAGGTCCGTG 59.554 47.826 0.00 0.00 0.00 4.94
2847 3168 3.705051 TCCTTGTATAGTTGAGGTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
2848 3169 4.159879 AGTTCCTTGTATAGTTGAGGTCCG 59.840 45.833 0.00 0.00 0.00 4.79
2849 3170 5.678955 AGTTCCTTGTATAGTTGAGGTCC 57.321 43.478 0.00 0.00 0.00 4.46
2850 3171 6.606395 TCCTAGTTCCTTGTATAGTTGAGGTC 59.394 42.308 0.00 0.00 0.00 3.85
2851 3172 6.500336 TCCTAGTTCCTTGTATAGTTGAGGT 58.500 40.000 0.00 0.00 0.00 3.85
2852 3173 6.041069 CCTCCTAGTTCCTTGTATAGTTGAGG 59.959 46.154 0.00 0.00 0.00 3.86
2853 3174 6.461788 GCCTCCTAGTTCCTTGTATAGTTGAG 60.462 46.154 0.00 0.00 0.00 3.02
2854 3175 5.363005 GCCTCCTAGTTCCTTGTATAGTTGA 59.637 44.000 0.00 0.00 0.00 3.18
2855 3176 5.602628 GCCTCCTAGTTCCTTGTATAGTTG 58.397 45.833 0.00 0.00 0.00 3.16
2856 3177 4.341520 CGCCTCCTAGTTCCTTGTATAGTT 59.658 45.833 0.00 0.00 0.00 2.24
2857 3178 3.890147 CGCCTCCTAGTTCCTTGTATAGT 59.110 47.826 0.00 0.00 0.00 2.12
2858 3179 3.256136 CCGCCTCCTAGTTCCTTGTATAG 59.744 52.174 0.00 0.00 0.00 1.31
2859 3180 3.228453 CCGCCTCCTAGTTCCTTGTATA 58.772 50.000 0.00 0.00 0.00 1.47
2860 3181 2.040178 CCGCCTCCTAGTTCCTTGTAT 58.960 52.381 0.00 0.00 0.00 2.29
2861 3182 1.481871 CCGCCTCCTAGTTCCTTGTA 58.518 55.000 0.00 0.00 0.00 2.41
2862 3183 1.265454 CCCGCCTCCTAGTTCCTTGT 61.265 60.000 0.00 0.00 0.00 3.16
2863 3184 1.522569 CCCGCCTCCTAGTTCCTTG 59.477 63.158 0.00 0.00 0.00 3.61
2864 3185 2.368011 GCCCGCCTCCTAGTTCCTT 61.368 63.158 0.00 0.00 0.00 3.36
2865 3186 2.764547 GCCCGCCTCCTAGTTCCT 60.765 66.667 0.00 0.00 0.00 3.36
2866 3187 3.862991 GGCCCGCCTCCTAGTTCC 61.863 72.222 0.00 0.00 0.00 3.62
2867 3188 3.862991 GGGCCCGCCTCCTAGTTC 61.863 72.222 5.69 0.00 36.10 3.01
2868 3189 4.733725 TGGGCCCGCCTCCTAGTT 62.734 66.667 19.37 0.00 36.10 2.24
2869 3190 2.615191 TATTGGGCCCGCCTCCTAGT 62.615 60.000 19.37 0.00 36.10 2.57
2870 3191 1.841556 TATTGGGCCCGCCTCCTAG 60.842 63.158 19.37 0.00 36.10 3.02
2871 3192 2.144738 GTATTGGGCCCGCCTCCTA 61.145 63.158 19.37 0.00 36.10 2.94
2872 3193 3.489513 GTATTGGGCCCGCCTCCT 61.490 66.667 19.37 0.00 36.10 3.69
2873 3194 3.804329 TGTATTGGGCCCGCCTCC 61.804 66.667 19.37 4.16 36.10 4.30
2874 3195 2.516225 GTGTATTGGGCCCGCCTC 60.516 66.667 19.37 8.62 36.10 4.70
2875 3196 2.223464 ATTGTGTATTGGGCCCGCCT 62.223 55.000 19.37 6.54 36.10 5.52
2876 3197 0.466555 TATTGTGTATTGGGCCCGCC 60.467 55.000 19.37 4.97 0.00 6.13
2877 3198 1.269448 CATATTGTGTATTGGGCCCGC 59.731 52.381 19.37 7.95 0.00 6.13
2878 3199 1.269448 GCATATTGTGTATTGGGCCCG 59.731 52.381 19.37 0.00 0.00 6.13
2879 3200 2.035832 GTGCATATTGTGTATTGGGCCC 59.964 50.000 17.59 17.59 0.00 5.80
2880 3201 2.692557 TGTGCATATTGTGTATTGGGCC 59.307 45.455 0.00 0.00 0.00 5.80
2881 3202 4.589216 ATGTGCATATTGTGTATTGGGC 57.411 40.909 0.00 0.00 0.00 5.36
2882 3203 6.917477 GTGTTATGTGCATATTGTGTATTGGG 59.083 38.462 0.00 0.00 0.00 4.12
2883 3204 7.479150 TGTGTTATGTGCATATTGTGTATTGG 58.521 34.615 0.00 0.00 0.00 3.16
2888 3209 9.559732 AGTATATGTGTTATGTGCATATTGTGT 57.440 29.630 0.00 0.00 37.15 3.72
2890 3211 9.777297 TGAGTATATGTGTTATGTGCATATTGT 57.223 29.630 0.00 0.00 37.15 2.71
2893 3214 9.777297 TGTTGAGTATATGTGTTATGTGCATAT 57.223 29.630 0.31 0.31 38.73 1.78
2894 3215 9.260002 CTGTTGAGTATATGTGTTATGTGCATA 57.740 33.333 0.00 0.00 0.00 3.14
2895 3216 7.254898 GCTGTTGAGTATATGTGTTATGTGCAT 60.255 37.037 0.00 0.00 0.00 3.96
2896 3217 6.037062 GCTGTTGAGTATATGTGTTATGTGCA 59.963 38.462 0.00 0.00 0.00 4.57
2897 3218 6.258727 AGCTGTTGAGTATATGTGTTATGTGC 59.741 38.462 0.00 0.00 0.00 4.57
2898 3219 7.042456 GGAGCTGTTGAGTATATGTGTTATGTG 60.042 40.741 0.00 0.00 0.00 3.21
2899 3220 6.986817 GGAGCTGTTGAGTATATGTGTTATGT 59.013 38.462 0.00 0.00 0.00 2.29
2900 3221 7.212976 AGGAGCTGTTGAGTATATGTGTTATG 58.787 38.462 0.00 0.00 0.00 1.90
2901 3222 7.366847 AGGAGCTGTTGAGTATATGTGTTAT 57.633 36.000 0.00 0.00 0.00 1.89
2902 3223 6.791867 AGGAGCTGTTGAGTATATGTGTTA 57.208 37.500 0.00 0.00 0.00 2.41
2903 3224 5.683876 AGGAGCTGTTGAGTATATGTGTT 57.316 39.130 0.00 0.00 0.00 3.32
2904 3225 5.656859 TGTAGGAGCTGTTGAGTATATGTGT 59.343 40.000 0.00 0.00 0.00 3.72
2905 3226 6.149129 TGTAGGAGCTGTTGAGTATATGTG 57.851 41.667 0.00 0.00 0.00 3.21
2906 3227 6.607600 TCTTGTAGGAGCTGTTGAGTATATGT 59.392 38.462 0.00 0.00 0.00 2.29
2907 3228 7.043961 TCTTGTAGGAGCTGTTGAGTATATG 57.956 40.000 0.00 0.00 0.00 1.78
2908 3229 7.847711 ATCTTGTAGGAGCTGTTGAGTATAT 57.152 36.000 0.00 0.00 0.00 0.86
2909 3230 7.561722 AGAATCTTGTAGGAGCTGTTGAGTATA 59.438 37.037 0.00 0.00 0.00 1.47
2910 3231 6.382570 AGAATCTTGTAGGAGCTGTTGAGTAT 59.617 38.462 0.00 0.00 0.00 2.12
2911 3232 5.717178 AGAATCTTGTAGGAGCTGTTGAGTA 59.283 40.000 0.00 0.00 0.00 2.59
2912 3233 4.530161 AGAATCTTGTAGGAGCTGTTGAGT 59.470 41.667 0.00 0.00 0.00 3.41
2913 3234 5.083533 AGAATCTTGTAGGAGCTGTTGAG 57.916 43.478 0.00 0.00 0.00 3.02
2914 3235 5.717178 ACTAGAATCTTGTAGGAGCTGTTGA 59.283 40.000 0.00 0.00 0.00 3.18
2915 3236 5.971763 ACTAGAATCTTGTAGGAGCTGTTG 58.028 41.667 0.00 0.00 0.00 3.33
2916 3237 6.613153 AACTAGAATCTTGTAGGAGCTGTT 57.387 37.500 0.00 0.00 0.00 3.16
2917 3238 6.613153 AAACTAGAATCTTGTAGGAGCTGT 57.387 37.500 0.00 0.00 0.00 4.40
2918 3239 5.746245 CGAAACTAGAATCTTGTAGGAGCTG 59.254 44.000 0.00 0.00 0.00 4.24
2978 3299 7.006509 CCACCTACATTTATGATTGGGAAGAT 58.993 38.462 0.00 0.00 0.00 2.40
3047 3368 5.679601 ACAAAAGCTCTCTCTGTTTCTTCT 58.320 37.500 0.00 0.00 0.00 2.85
3134 3455 6.825610 AGATTTGTTTGCCTTGGTATGAAAA 58.174 32.000 0.00 0.00 0.00 2.29
3135 3456 6.418057 AGATTTGTTTGCCTTGGTATGAAA 57.582 33.333 0.00 0.00 0.00 2.69
3200 3521 6.484364 AATCCCTTGACACTTGACAAAAAT 57.516 33.333 0.00 0.00 30.22 1.82
3208 3529 1.962807 TGGCAAATCCCTTGACACTTG 59.037 47.619 0.00 0.00 46.64 3.16
3369 4008 8.630054 ACAGCAAATTTAGATACCAGTAACAA 57.370 30.769 0.00 0.00 0.00 2.83
3422 4061 5.416639 TGCAAACATCATTCTGCTTCTGTAT 59.583 36.000 0.00 0.00 35.78 2.29
3679 4318 3.083997 GGGACAGCCATCCGGACT 61.084 66.667 6.12 0.00 39.97 3.85
3835 4474 2.095461 CTCCTGACAATCTCGTCCTGA 58.905 52.381 0.00 0.00 34.88 3.86
3943 4582 0.391597 TCGGAAGATGGCGGATTACC 59.608 55.000 0.00 0.00 33.31 2.85
4025 4664 2.938451 CACCTGCTGAGAAATTATCGCA 59.062 45.455 6.87 6.87 36.37 5.10
4032 4671 0.957395 CACGCCACCTGCTGAGAAAT 60.957 55.000 0.00 0.00 38.05 2.17
4065 4704 4.066490 CCAGGCAAAATTTCAAAGATGCA 58.934 39.130 11.29 0.00 35.57 3.96
4148 4802 7.760794 TGAATCATTTCCATTCATAGTGTTTGC 59.239 33.333 0.00 0.00 35.71 3.68
4149 4803 9.642327 TTGAATCATTTCCATTCATAGTGTTTG 57.358 29.630 0.00 0.00 39.46 2.93
4152 4806 9.811995 CAATTGAATCATTTCCATTCATAGTGT 57.188 29.630 0.00 0.00 39.46 3.55
4153 4807 8.761497 GCAATTGAATCATTTCCATTCATAGTG 58.239 33.333 10.34 0.00 39.46 2.74
4154 4808 8.701895 AGCAATTGAATCATTTCCATTCATAGT 58.298 29.630 10.34 0.00 39.46 2.12
4155 4809 9.193133 GAGCAATTGAATCATTTCCATTCATAG 57.807 33.333 10.34 0.00 39.46 2.23
4156 4810 8.920174 AGAGCAATTGAATCATTTCCATTCATA 58.080 29.630 10.34 0.00 39.46 2.15
4157 4811 7.792032 AGAGCAATTGAATCATTTCCATTCAT 58.208 30.769 10.34 0.00 39.46 2.57
4158 4812 7.177832 AGAGCAATTGAATCATTTCCATTCA 57.822 32.000 10.34 0.00 38.27 2.57
4159 4813 8.488651 AAAGAGCAATTGAATCATTTCCATTC 57.511 30.769 10.34 0.00 27.71 2.67
4160 4814 8.857694 AAAAGAGCAATTGAATCATTTCCATT 57.142 26.923 10.34 0.00 29.69 3.16
4161 4815 7.277098 CGAAAAGAGCAATTGAATCATTTCCAT 59.723 33.333 22.45 4.58 30.69 3.41
4162 4816 6.587226 CGAAAAGAGCAATTGAATCATTTCCA 59.413 34.615 22.45 0.00 30.69 3.53
4163 4817 6.587608 ACGAAAAGAGCAATTGAATCATTTCC 59.412 34.615 22.45 13.00 30.69 3.13
4164 4818 7.411157 CCACGAAAAGAGCAATTGAATCATTTC 60.411 37.037 20.52 20.52 30.98 2.17
4165 4819 6.366877 CCACGAAAAGAGCAATTGAATCATTT 59.633 34.615 10.34 11.19 0.00 2.32
4211 4865 1.115467 CAGTCGTCTCCTAGGCCATT 58.885 55.000 5.01 0.00 0.00 3.16
4304 4958 2.216898 GCACTAGCAATCTCATCACCC 58.783 52.381 0.00 0.00 41.58 4.61
4388 5043 2.039879 TGCATGAGATATCAGCTGGCAT 59.960 45.455 15.13 7.30 0.00 4.40
4456 5113 0.925267 CGTGCGCTGACAAGTTGTTG 60.925 55.000 10.45 7.69 39.82 3.33
4565 5225 2.765689 TTTGGTTTGGTCACCCTCAT 57.234 45.000 0.00 0.00 35.73 2.90
4597 5257 2.633488 AGCATTCTCTTTCGTTAGGGC 58.367 47.619 0.00 0.00 0.00 5.19
4598 5258 3.375299 CCAAGCATTCTCTTTCGTTAGGG 59.625 47.826 0.00 0.00 0.00 3.53
4623 5283 3.482833 GCGAACGTAGAAGCTCATAAGTC 59.517 47.826 0.00 0.00 0.00 3.01
4644 5304 5.624081 GCTTTACTTTTGAAAGTCGTAAGGC 59.376 40.000 12.05 9.75 45.65 4.35
4683 5343 7.674471 ACTTTTGAAAGTCATAAGGCTCTAC 57.326 36.000 11.47 0.00 45.65 2.59
4684 5344 9.787435 TTTACTTTTGAAAGTCATAAGGCTCTA 57.213 29.630 12.05 0.00 45.65 2.43
4685 5345 8.691661 TTTACTTTTGAAAGTCATAAGGCTCT 57.308 30.769 12.05 0.00 45.65 4.09
4686 5346 7.539022 GCTTTACTTTTGAAAGTCATAAGGCTC 59.461 37.037 12.05 1.57 45.65 4.70
4687 5347 7.231519 AGCTTTACTTTTGAAAGTCATAAGGCT 59.768 33.333 12.05 14.20 45.65 4.58
4688 5348 7.371159 AGCTTTACTTTTGAAAGTCATAAGGC 58.629 34.615 12.05 12.51 45.65 4.35
4689 5349 9.827411 GTAGCTTTACTTTTGAAAGTCATAAGG 57.173 33.333 12.05 4.42 45.65 2.69
4722 5382 4.793201 ACCTTGCTTGTCCTCTAGTTTTT 58.207 39.130 0.00 0.00 0.00 1.94
4723 5383 4.103311 AGACCTTGCTTGTCCTCTAGTTTT 59.897 41.667 0.00 0.00 33.09 2.43
4724 5384 3.648545 AGACCTTGCTTGTCCTCTAGTTT 59.351 43.478 0.00 0.00 33.09 2.66
4725 5385 3.243724 AGACCTTGCTTGTCCTCTAGTT 58.756 45.455 0.00 0.00 33.09 2.24
4726 5386 2.896039 AGACCTTGCTTGTCCTCTAGT 58.104 47.619 0.00 0.00 33.09 2.57
4727 5387 4.382147 GGTTAGACCTTGCTTGTCCTCTAG 60.382 50.000 0.00 0.00 34.73 2.43
4749 5409 1.490910 GACCTATCAACTCCCCCAAGG 59.509 57.143 0.00 0.00 0.00 3.61
4750 5410 2.171448 CAGACCTATCAACTCCCCCAAG 59.829 54.545 0.00 0.00 0.00 3.61
4766 5426 6.577427 GTGTCGATGAAAACAAAATACAGACC 59.423 38.462 0.00 0.00 0.00 3.85
4783 5443 2.917933 AGAGAGAGAGAGGTGTCGATG 58.082 52.381 0.00 0.00 0.00 3.84
4787 5447 5.241506 CCATGATTAGAGAGAGAGAGGTGTC 59.758 48.000 0.00 0.00 0.00 3.67
4854 5514 2.233305 TCCTCCCTCAAGTGTAGACC 57.767 55.000 0.00 0.00 0.00 3.85
4860 5520 1.409427 GGACGTATCCTCCCTCAAGTG 59.591 57.143 0.00 0.00 42.45 3.16
4866 5526 2.320781 CAAGATGGACGTATCCTCCCT 58.679 52.381 0.00 0.00 46.43 4.20



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.