Multiple sequence alignment - TraesCS4B01G156700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G156700 chr4B 100.000 3156 0 0 1 3156 291845611 291842456 0.000000e+00 5829
1 TraesCS4B01G156700 chr4B 95.531 1365 27 14 656 1988 49114723 49113361 0.000000e+00 2152
2 TraesCS4B01G156700 chr4B 94.215 121 7 0 1 121 189677669 189677789 5.380000e-43 185
3 TraesCS4B01G156700 chr2B 98.461 2404 31 5 756 3156 689376745 689379145 0.000000e+00 4229
4 TraesCS4B01G156700 chr2B 98.044 2403 42 4 756 3156 45602080 45599681 0.000000e+00 4172
5 TraesCS4B01G156700 chr2B 97.673 2407 46 7 755 3156 153870459 153868058 0.000000e+00 4126
6 TraesCS4B01G156700 chr2B 92.982 114 8 0 655 768 689376609 689376722 1.950000e-37 167
7 TraesCS4B01G156700 chr2B 92.920 113 8 0 656 768 45602214 45602102 7.000000e-37 165
8 TraesCS4B01G156700 chr7B 98.169 2403 41 3 756 3156 130341122 130338721 0.000000e+00 4191
9 TraesCS4B01G156700 chr7B 98.047 2407 37 6 756 3156 200354808 200357210 0.000000e+00 4176
10 TraesCS4B01G156700 chr7B 85.981 214 22 1 655 868 720239351 720239146 4.100000e-54 222
11 TraesCS4B01G156700 chr7B 90.265 113 10 1 656 768 200354674 200354785 2.540000e-31 147
12 TraesCS4B01G156700 chr3B 98.130 2407 36 6 756 3156 435966929 435964526 0.000000e+00 4187
13 TraesCS4B01G156700 chr3B 98.127 2403 38 6 756 3156 422227160 422229557 0.000000e+00 4181
14 TraesCS4B01G156700 chr3B 94.215 121 7 0 1 121 623653038 623652918 5.380000e-43 185
15 TraesCS4B01G156700 chr3B 92.920 113 8 0 656 768 422227025 422227137 7.000000e-37 165
16 TraesCS4B01G156700 chr3B 92.105 114 8 1 655 768 803577923 803578035 3.260000e-35 159
17 TraesCS4B01G156700 chr6B 96.510 2407 71 11 757 3156 687507996 687510396 0.000000e+00 3967
18 TraesCS4B01G156700 chr6B 94.735 2412 108 15 757 3156 661059070 661056666 0.000000e+00 3733
19 TraesCS4B01G156700 chr6B 89.116 147 11 4 1 146 478330664 478330806 9.000000e-41 178
20 TraesCS4B01G156700 chr4A 80.997 321 45 12 150 459 173955962 173956277 1.130000e-59 241
21 TraesCS4B01G156700 chr6D 95.868 121 5 0 1 121 68629334 68629454 2.480000e-46 196
22 TraesCS4B01G156700 chr5A 87.647 170 17 3 656 823 679482257 679482090 8.930000e-46 195
23 TraesCS4B01G156700 chr5A 92.126 127 10 0 1 127 74491788 74491662 2.500000e-41 180
24 TraesCS4B01G156700 chr4D 94.262 122 7 0 1 122 67339815 67339936 1.490000e-43 187
25 TraesCS4B01G156700 chr3A 91.852 135 10 1 1 134 714956204 714956070 1.490000e-43 187
26 TraesCS4B01G156700 chr7D 94.915 118 6 0 1 118 161930805 161930922 5.380000e-43 185
27 TraesCS4B01G156700 chr2D 94.215 121 7 0 1 121 347449630 347449510 5.380000e-43 185
28 TraesCS4B01G156700 chr2A 84.483 116 16 2 655 768 372759158 372759043 2.570000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G156700 chr4B 291842456 291845611 3155 True 5829.0 5829 100.0000 1 3156 1 chr4B.!!$R2 3155
1 TraesCS4B01G156700 chr4B 49113361 49114723 1362 True 2152.0 2152 95.5310 656 1988 1 chr4B.!!$R1 1332
2 TraesCS4B01G156700 chr2B 153868058 153870459 2401 True 4126.0 4126 97.6730 755 3156 1 chr2B.!!$R1 2401
3 TraesCS4B01G156700 chr2B 689376609 689379145 2536 False 2198.0 4229 95.7215 655 3156 2 chr2B.!!$F1 2501
4 TraesCS4B01G156700 chr2B 45599681 45602214 2533 True 2168.5 4172 95.4820 656 3156 2 chr2B.!!$R2 2500
5 TraesCS4B01G156700 chr7B 130338721 130341122 2401 True 4191.0 4191 98.1690 756 3156 1 chr7B.!!$R1 2400
6 TraesCS4B01G156700 chr7B 200354674 200357210 2536 False 2161.5 4176 94.1560 656 3156 2 chr7B.!!$F1 2500
7 TraesCS4B01G156700 chr3B 435964526 435966929 2403 True 4187.0 4187 98.1300 756 3156 1 chr3B.!!$R1 2400
8 TraesCS4B01G156700 chr3B 422227025 422229557 2532 False 2173.0 4181 95.5235 656 3156 2 chr3B.!!$F2 2500
9 TraesCS4B01G156700 chr6B 687507996 687510396 2400 False 3967.0 3967 96.5100 757 3156 1 chr6B.!!$F2 2399
10 TraesCS4B01G156700 chr6B 661056666 661059070 2404 True 3733.0 3733 94.7350 757 3156 1 chr6B.!!$R1 2399

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.036164 GGGGTGAGTGCACATGTACA 59.964 55.0 21.04 0.00 46.96 2.90 F
313 314 0.036732 AGGCACCAATGAGAAAGCGA 59.963 50.0 0.00 0.00 0.00 4.93 F
650 651 0.104855 TGCTTTCTGGATCGATCCCG 59.895 55.0 35.72 30.51 46.59 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1663 3.576078 TCATCCGCCATCCTACAAAAT 57.424 42.857 0.0 0.0 0.0 1.82 R
2055 2115 4.678269 CGACGCTGACACGACCGT 62.678 66.667 0.0 0.0 36.7 4.83 R
2591 2652 1.597027 CCCGTCATGATTACCCCGC 60.597 63.158 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 9.569122 TTAGGGTGATAAAATTGATAACCTAGC 57.431 33.333 0.00 0.00 0.00 3.42
83 84 7.816411 AGGGTGATAAAATTGATAACCTAGCT 58.184 34.615 0.00 0.00 0.00 3.32
84 85 8.945193 AGGGTGATAAAATTGATAACCTAGCTA 58.055 33.333 0.00 0.00 0.00 3.32
85 86 9.740710 GGGTGATAAAATTGATAACCTAGCTAT 57.259 33.333 0.00 0.00 0.00 2.97
90 91 6.946229 AAATTGATAACCTAGCTATACGCG 57.054 37.500 3.53 3.53 45.59 6.01
91 92 5.640189 ATTGATAACCTAGCTATACGCGT 57.360 39.130 19.17 19.17 45.59 6.01
92 93 6.748333 ATTGATAACCTAGCTATACGCGTA 57.252 37.500 22.94 22.94 45.59 4.42
93 94 5.791367 TGATAACCTAGCTATACGCGTAG 57.209 43.478 24.78 14.88 45.59 3.51
94 95 4.633126 TGATAACCTAGCTATACGCGTAGG 59.367 45.833 24.78 21.85 45.59 3.18
95 96 2.847327 ACCTAGCTATACGCGTAGGA 57.153 50.000 25.95 15.34 45.59 2.94
96 97 2.421619 ACCTAGCTATACGCGTAGGAC 58.578 52.381 25.95 16.53 45.59 3.85
97 98 2.038295 ACCTAGCTATACGCGTAGGACT 59.962 50.000 25.95 21.69 45.59 3.85
98 99 3.072944 CCTAGCTATACGCGTAGGACTT 58.927 50.000 24.78 9.82 45.59 3.01
99 100 3.120269 CCTAGCTATACGCGTAGGACTTG 60.120 52.174 24.78 18.76 45.59 3.16
100 101 2.295885 AGCTATACGCGTAGGACTTGT 58.704 47.619 24.78 8.30 45.59 3.16
101 102 3.470709 AGCTATACGCGTAGGACTTGTA 58.529 45.455 24.78 9.04 45.59 2.41
102 103 3.879295 AGCTATACGCGTAGGACTTGTAA 59.121 43.478 24.78 0.00 45.59 2.41
103 104 4.336433 AGCTATACGCGTAGGACTTGTAAA 59.664 41.667 24.78 0.00 45.59 2.01
104 105 4.439123 GCTATACGCGTAGGACTTGTAAAC 59.561 45.833 24.78 2.08 0.00 2.01
105 106 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
106 107 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
107 108 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
108 109 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
109 110 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
110 111 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
111 112 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
112 113 4.977963 CGTAGGACTTGTAAACTGAAACGA 59.022 41.667 0.00 0.00 0.00 3.85
113 114 5.459762 CGTAGGACTTGTAAACTGAAACGAA 59.540 40.000 0.00 0.00 0.00 3.85
114 115 6.145048 CGTAGGACTTGTAAACTGAAACGAAT 59.855 38.462 0.00 0.00 0.00 3.34
115 116 6.300354 AGGACTTGTAAACTGAAACGAATG 57.700 37.500 0.00 0.00 0.00 2.67
116 117 5.238650 AGGACTTGTAAACTGAAACGAATGG 59.761 40.000 0.00 0.00 0.00 3.16
117 118 5.237779 GGACTTGTAAACTGAAACGAATGGA 59.762 40.000 0.00 0.00 0.00 3.41
118 119 6.300354 ACTTGTAAACTGAAACGAATGGAG 57.700 37.500 0.00 0.00 0.00 3.86
119 120 5.820947 ACTTGTAAACTGAAACGAATGGAGT 59.179 36.000 0.00 0.00 0.00 3.85
120 121 6.987992 ACTTGTAAACTGAAACGAATGGAGTA 59.012 34.615 0.00 0.00 0.00 2.59
121 122 6.774354 TGTAAACTGAAACGAATGGAGTAC 57.226 37.500 0.00 0.00 0.00 2.73
122 123 6.282167 TGTAAACTGAAACGAATGGAGTACA 58.718 36.000 0.00 0.00 0.00 2.90
123 124 5.924475 AAACTGAAACGAATGGAGTACAG 57.076 39.130 0.00 0.00 34.66 2.74
124 125 4.602340 ACTGAAACGAATGGAGTACAGT 57.398 40.909 0.00 0.00 35.89 3.55
125 126 5.717078 ACTGAAACGAATGGAGTACAGTA 57.283 39.130 0.00 0.00 37.48 2.74
126 127 6.092955 ACTGAAACGAATGGAGTACAGTAA 57.907 37.500 0.00 0.00 37.48 2.24
127 128 6.518493 ACTGAAACGAATGGAGTACAGTAAA 58.482 36.000 0.00 0.00 37.48 2.01
128 129 7.159372 ACTGAAACGAATGGAGTACAGTAAAT 58.841 34.615 0.00 0.00 37.48 1.40
129 130 7.117812 ACTGAAACGAATGGAGTACAGTAAATG 59.882 37.037 0.00 0.00 37.48 2.32
130 131 7.156000 TGAAACGAATGGAGTACAGTAAATGA 58.844 34.615 0.00 0.00 0.00 2.57
131 132 7.822334 TGAAACGAATGGAGTACAGTAAATGAT 59.178 33.333 0.00 0.00 0.00 2.45
132 133 7.772332 AACGAATGGAGTACAGTAAATGATC 57.228 36.000 0.00 0.00 0.00 2.92
133 134 6.281405 ACGAATGGAGTACAGTAAATGATCC 58.719 40.000 0.00 0.00 33.17 3.36
134 135 6.098409 ACGAATGGAGTACAGTAAATGATCCT 59.902 38.462 0.00 0.00 33.49 3.24
135 136 6.986817 CGAATGGAGTACAGTAAATGATCCTT 59.013 38.462 0.00 0.00 33.49 3.36
136 137 7.495934 CGAATGGAGTACAGTAAATGATCCTTT 59.504 37.037 0.00 1.49 33.72 3.11
137 138 9.178758 GAATGGAGTACAGTAAATGATCCTTTT 57.821 33.333 1.11 0.00 32.53 2.27
138 139 7.921786 TGGAGTACAGTAAATGATCCTTTTG 57.078 36.000 1.11 0.00 33.49 2.44
139 140 7.685481 TGGAGTACAGTAAATGATCCTTTTGA 58.315 34.615 1.11 0.00 33.49 2.69
140 141 8.160765 TGGAGTACAGTAAATGATCCTTTTGAA 58.839 33.333 1.11 0.00 33.49 2.69
141 142 9.178758 GGAGTACAGTAAATGATCCTTTTGAAT 57.821 33.333 1.11 0.00 31.24 2.57
143 144 9.739276 AGTACAGTAAATGATCCTTTTGAATCA 57.261 29.630 1.11 0.00 0.00 2.57
153 154 8.241497 TGATCCTTTTGAATCATAATGGAAGG 57.759 34.615 12.76 0.00 33.10 3.46
154 155 7.288389 TGATCCTTTTGAATCATAATGGAAGGG 59.712 37.037 12.76 2.43 34.58 3.95
155 156 5.898972 TCCTTTTGAATCATAATGGAAGGGG 59.101 40.000 0.00 0.00 34.58 4.79
156 157 5.662657 CCTTTTGAATCATAATGGAAGGGGT 59.337 40.000 0.00 0.00 31.13 4.95
157 158 6.407299 CCTTTTGAATCATAATGGAAGGGGTG 60.407 42.308 0.00 0.00 31.13 4.61
158 159 5.464588 TTGAATCATAATGGAAGGGGTGA 57.535 39.130 0.00 0.00 0.00 4.02
159 160 5.052693 TGAATCATAATGGAAGGGGTGAG 57.947 43.478 0.00 0.00 0.00 3.51
160 161 4.478317 TGAATCATAATGGAAGGGGTGAGT 59.522 41.667 0.00 0.00 0.00 3.41
161 162 3.931907 TCATAATGGAAGGGGTGAGTG 57.068 47.619 0.00 0.00 0.00 3.51
162 163 2.092429 TCATAATGGAAGGGGTGAGTGC 60.092 50.000 0.00 0.00 0.00 4.40
163 164 1.367346 TAATGGAAGGGGTGAGTGCA 58.633 50.000 0.00 0.00 0.00 4.57
164 165 0.251341 AATGGAAGGGGTGAGTGCAC 60.251 55.000 9.40 9.40 44.39 4.57
165 166 1.426251 ATGGAAGGGGTGAGTGCACA 61.426 55.000 21.04 0.00 46.96 4.57
166 167 1.380302 GGAAGGGGTGAGTGCACAT 59.620 57.895 21.04 3.82 46.96 3.21
167 168 0.962356 GGAAGGGGTGAGTGCACATG 60.962 60.000 21.04 0.00 46.96 3.21
168 169 0.250901 GAAGGGGTGAGTGCACATGT 60.251 55.000 21.04 0.00 46.96 3.21
169 170 1.003118 GAAGGGGTGAGTGCACATGTA 59.997 52.381 21.04 0.00 46.96 2.29
170 171 0.324943 AGGGGTGAGTGCACATGTAC 59.675 55.000 21.04 11.47 46.96 2.90
171 172 0.036164 GGGGTGAGTGCACATGTACA 59.964 55.000 21.04 0.00 46.96 2.90
172 173 1.340017 GGGGTGAGTGCACATGTACAT 60.340 52.381 21.04 1.41 46.96 2.29
173 174 2.093181 GGGGTGAGTGCACATGTACATA 60.093 50.000 21.04 0.00 46.96 2.29
174 175 2.936498 GGGTGAGTGCACATGTACATAC 59.064 50.000 21.04 3.09 46.96 2.39
175 176 3.595173 GGTGAGTGCACATGTACATACA 58.405 45.455 21.04 4.71 46.96 2.29
176 177 4.191544 GGTGAGTGCACATGTACATACAT 58.808 43.478 21.04 0.00 46.96 2.29
177 178 5.356426 GGTGAGTGCACATGTACATACATA 58.644 41.667 21.04 0.00 46.96 2.29
178 179 5.815222 GGTGAGTGCACATGTACATACATAA 59.185 40.000 21.04 0.00 46.96 1.90
179 180 6.315144 GGTGAGTGCACATGTACATACATAAA 59.685 38.462 21.04 0.00 46.96 1.40
180 181 7.148323 GGTGAGTGCACATGTACATACATAAAA 60.148 37.037 21.04 0.00 46.96 1.52
181 182 8.233868 GTGAGTGCACATGTACATACATAAAAA 58.766 33.333 21.04 0.00 44.57 1.94
200 201 5.458041 AAAAATATGAGCACTGCACTTGT 57.542 34.783 3.30 0.00 0.00 3.16
201 202 6.573664 AAAAATATGAGCACTGCACTTGTA 57.426 33.333 3.30 0.00 0.00 2.41
202 203 6.573664 AAAATATGAGCACTGCACTTGTAA 57.426 33.333 3.30 0.00 0.00 2.41
203 204 5.551760 AATATGAGCACTGCACTTGTAAC 57.448 39.130 3.30 0.00 0.00 2.50
204 205 2.620251 TGAGCACTGCACTTGTAACT 57.380 45.000 3.30 0.00 0.00 2.24
205 206 2.917933 TGAGCACTGCACTTGTAACTT 58.082 42.857 3.30 0.00 0.00 2.66
206 207 3.278574 TGAGCACTGCACTTGTAACTTT 58.721 40.909 3.30 0.00 0.00 2.66
207 208 3.312421 TGAGCACTGCACTTGTAACTTTC 59.688 43.478 3.30 0.00 0.00 2.62
208 209 3.545703 AGCACTGCACTTGTAACTTTCT 58.454 40.909 3.30 0.00 0.00 2.52
209 210 3.947834 AGCACTGCACTTGTAACTTTCTT 59.052 39.130 3.30 0.00 0.00 2.52
210 211 5.123227 AGCACTGCACTTGTAACTTTCTTA 58.877 37.500 3.30 0.00 0.00 2.10
211 212 5.765182 AGCACTGCACTTGTAACTTTCTTAT 59.235 36.000 3.30 0.00 0.00 1.73
212 213 6.934645 AGCACTGCACTTGTAACTTTCTTATA 59.065 34.615 3.30 0.00 0.00 0.98
213 214 7.607991 AGCACTGCACTTGTAACTTTCTTATAT 59.392 33.333 3.30 0.00 0.00 0.86
214 215 7.905493 GCACTGCACTTGTAACTTTCTTATATC 59.095 37.037 0.00 0.00 0.00 1.63
215 216 8.935844 CACTGCACTTGTAACTTTCTTATATCA 58.064 33.333 0.00 0.00 0.00 2.15
216 217 9.502091 ACTGCACTTGTAACTTTCTTATATCAA 57.498 29.630 0.00 0.00 0.00 2.57
217 218 9.760660 CTGCACTTGTAACTTTCTTATATCAAC 57.239 33.333 0.00 0.00 0.00 3.18
218 219 8.726988 TGCACTTGTAACTTTCTTATATCAACC 58.273 33.333 0.00 0.00 0.00 3.77
219 220 8.726988 GCACTTGTAACTTTCTTATATCAACCA 58.273 33.333 0.00 0.00 0.00 3.67
228 229 9.739276 ACTTTCTTATATCAACCATGTTTCTGA 57.261 29.630 0.00 0.00 0.00 3.27
232 233 9.958180 TCTTATATCAACCATGTTTCTGAAAGA 57.042 29.630 2.48 2.36 44.68 2.52
260 261 9.545105 AAAAATGCTGATAACTGACATCAAAAA 57.455 25.926 0.00 0.00 32.20 1.94
283 284 9.855021 AAAAACAAATATTGGATGTGTAGCTAC 57.145 29.630 17.30 17.30 34.12 3.58
284 285 7.568199 AACAAATATTGGATGTGTAGCTACC 57.432 36.000 21.01 12.59 34.12 3.18
285 286 6.658849 ACAAATATTGGATGTGTAGCTACCA 58.341 36.000 21.01 17.49 34.12 3.25
286 287 7.116075 ACAAATATTGGATGTGTAGCTACCAA 58.884 34.615 21.01 16.84 43.23 3.67
287 288 7.283127 ACAAATATTGGATGTGTAGCTACCAAG 59.717 37.037 21.01 7.79 42.53 3.61
298 299 3.650647 CTACCAAGCAAAGGAGGCA 57.349 52.632 0.00 0.00 0.00 4.75
299 300 1.168714 CTACCAAGCAAAGGAGGCAC 58.831 55.000 0.00 0.00 0.00 5.01
300 301 0.251165 TACCAAGCAAAGGAGGCACC 60.251 55.000 0.00 0.00 39.35 5.01
301 302 1.531365 CCAAGCAAAGGAGGCACCA 60.531 57.895 3.18 0.00 42.04 4.17
302 303 1.114722 CCAAGCAAAGGAGGCACCAA 61.115 55.000 3.18 0.00 42.04 3.67
303 304 0.971386 CAAGCAAAGGAGGCACCAAT 59.029 50.000 3.18 0.00 42.04 3.16
304 305 0.971386 AAGCAAAGGAGGCACCAATG 59.029 50.000 3.18 2.74 42.04 2.82
305 306 0.112995 AGCAAAGGAGGCACCAATGA 59.887 50.000 3.18 0.00 42.04 2.57
306 307 0.529378 GCAAAGGAGGCACCAATGAG 59.471 55.000 3.18 0.00 42.04 2.90
307 308 1.887956 GCAAAGGAGGCACCAATGAGA 60.888 52.381 3.18 0.00 42.04 3.27
308 309 2.517959 CAAAGGAGGCACCAATGAGAA 58.482 47.619 3.18 0.00 42.04 2.87
309 310 2.892852 CAAAGGAGGCACCAATGAGAAA 59.107 45.455 3.18 0.00 42.04 2.52
310 311 2.503895 AGGAGGCACCAATGAGAAAG 57.496 50.000 3.18 0.00 42.04 2.62
311 312 0.813821 GGAGGCACCAATGAGAAAGC 59.186 55.000 0.00 0.00 38.79 3.51
312 313 0.449388 GAGGCACCAATGAGAAAGCG 59.551 55.000 0.00 0.00 0.00 4.68
313 314 0.036732 AGGCACCAATGAGAAAGCGA 59.963 50.000 0.00 0.00 0.00 4.93
314 315 0.169009 GGCACCAATGAGAAAGCGAC 59.831 55.000 0.00 0.00 0.00 5.19
315 316 0.169009 GCACCAATGAGAAAGCGACC 59.831 55.000 0.00 0.00 0.00 4.79
316 317 1.813513 CACCAATGAGAAAGCGACCT 58.186 50.000 0.00 0.00 0.00 3.85
317 318 1.466167 CACCAATGAGAAAGCGACCTG 59.534 52.381 0.00 0.00 0.00 4.00
318 319 1.072331 ACCAATGAGAAAGCGACCTGT 59.928 47.619 0.00 0.00 0.00 4.00
319 320 2.154462 CCAATGAGAAAGCGACCTGTT 58.846 47.619 0.00 0.00 0.00 3.16
320 321 2.095567 CCAATGAGAAAGCGACCTGTTG 60.096 50.000 0.00 0.00 0.00 3.33
321 322 2.549754 CAATGAGAAAGCGACCTGTTGT 59.450 45.455 0.00 0.00 0.00 3.32
322 323 3.678056 ATGAGAAAGCGACCTGTTGTA 57.322 42.857 0.00 0.00 0.00 2.41
323 324 3.462483 TGAGAAAGCGACCTGTTGTAA 57.538 42.857 0.00 0.00 0.00 2.41
324 325 3.128349 TGAGAAAGCGACCTGTTGTAAC 58.872 45.455 0.00 0.00 0.00 2.50
325 326 2.479275 GAGAAAGCGACCTGTTGTAACC 59.521 50.000 0.00 0.00 0.00 2.85
326 327 1.193874 GAAAGCGACCTGTTGTAACCG 59.806 52.381 0.00 0.00 0.00 4.44
327 328 0.105408 AAGCGACCTGTTGTAACCGT 59.895 50.000 0.00 0.00 0.00 4.83
328 329 0.105408 AGCGACCTGTTGTAACCGTT 59.895 50.000 0.00 0.00 0.00 4.44
329 330 0.233848 GCGACCTGTTGTAACCGTTG 59.766 55.000 0.00 0.00 0.00 4.10
330 331 1.574134 CGACCTGTTGTAACCGTTGT 58.426 50.000 0.00 0.00 0.00 3.32
331 332 1.935199 CGACCTGTTGTAACCGTTGTT 59.065 47.619 0.00 0.00 38.52 2.83
332 333 2.033492 CGACCTGTTGTAACCGTTGTTC 60.033 50.000 0.00 0.00 35.87 3.18
333 334 1.935199 ACCTGTTGTAACCGTTGTTCG 59.065 47.619 0.00 0.00 35.87 3.95
358 359 2.443887 TTTGAACGGAGGGAGTAACG 57.556 50.000 0.00 0.00 0.00 3.18
359 360 1.619654 TTGAACGGAGGGAGTAACGA 58.380 50.000 0.00 0.00 0.00 3.85
360 361 1.619654 TGAACGGAGGGAGTAACGAA 58.380 50.000 0.00 0.00 0.00 3.85
361 362 1.542915 TGAACGGAGGGAGTAACGAAG 59.457 52.381 0.00 0.00 0.00 3.79
362 363 1.815003 GAACGGAGGGAGTAACGAAGA 59.185 52.381 0.00 0.00 0.00 2.87
363 364 1.172175 ACGGAGGGAGTAACGAAGAC 58.828 55.000 0.00 0.00 0.00 3.01
364 365 1.171308 CGGAGGGAGTAACGAAGACA 58.829 55.000 0.00 0.00 0.00 3.41
365 366 1.542915 CGGAGGGAGTAACGAAGACAA 59.457 52.381 0.00 0.00 0.00 3.18
366 367 2.670509 CGGAGGGAGTAACGAAGACAAC 60.671 54.545 0.00 0.00 0.00 3.32
367 368 2.561858 GGAGGGAGTAACGAAGACAACT 59.438 50.000 0.00 0.00 0.00 3.16
368 369 3.760684 GGAGGGAGTAACGAAGACAACTA 59.239 47.826 0.00 0.00 0.00 2.24
369 370 4.380339 GGAGGGAGTAACGAAGACAACTAC 60.380 50.000 0.00 0.00 0.00 2.73
370 371 4.147321 AGGGAGTAACGAAGACAACTACA 58.853 43.478 0.00 0.00 0.00 2.74
371 372 4.586001 AGGGAGTAACGAAGACAACTACAA 59.414 41.667 0.00 0.00 0.00 2.41
372 373 5.069516 AGGGAGTAACGAAGACAACTACAAA 59.930 40.000 0.00 0.00 0.00 2.83
373 374 5.754890 GGGAGTAACGAAGACAACTACAAAA 59.245 40.000 0.00 0.00 0.00 2.44
374 375 6.258507 GGGAGTAACGAAGACAACTACAAAAA 59.741 38.462 0.00 0.00 0.00 1.94
395 396 6.702716 AAAAACAGAAGTCCCGTAAAATCA 57.297 33.333 0.00 0.00 0.00 2.57
396 397 5.941948 AAACAGAAGTCCCGTAAAATCAG 57.058 39.130 0.00 0.00 0.00 2.90
397 398 3.939066 ACAGAAGTCCCGTAAAATCAGG 58.061 45.455 0.00 0.00 0.00 3.86
398 399 3.581332 ACAGAAGTCCCGTAAAATCAGGA 59.419 43.478 0.00 0.00 0.00 3.86
399 400 4.041198 ACAGAAGTCCCGTAAAATCAGGAA 59.959 41.667 0.00 0.00 0.00 3.36
400 401 4.392138 CAGAAGTCCCGTAAAATCAGGAAC 59.608 45.833 0.00 0.00 0.00 3.62
401 402 4.041198 AGAAGTCCCGTAAAATCAGGAACA 59.959 41.667 0.00 0.00 0.00 3.18
402 403 3.671716 AGTCCCGTAAAATCAGGAACAC 58.328 45.455 0.00 0.00 0.00 3.32
403 404 2.745821 GTCCCGTAAAATCAGGAACACC 59.254 50.000 0.00 0.00 0.00 4.16
404 405 2.372504 TCCCGTAAAATCAGGAACACCA 59.627 45.455 0.00 0.00 0.00 4.17
405 406 3.150767 CCCGTAAAATCAGGAACACCAA 58.849 45.455 0.00 0.00 0.00 3.67
406 407 3.570550 CCCGTAAAATCAGGAACACCAAA 59.429 43.478 0.00 0.00 0.00 3.28
407 408 4.320935 CCCGTAAAATCAGGAACACCAAAG 60.321 45.833 0.00 0.00 0.00 2.77
408 409 4.226761 CGTAAAATCAGGAACACCAAAGC 58.773 43.478 0.00 0.00 0.00 3.51
409 410 4.261405 CGTAAAATCAGGAACACCAAAGCA 60.261 41.667 0.00 0.00 0.00 3.91
410 411 4.326504 AAAATCAGGAACACCAAAGCAG 57.673 40.909 0.00 0.00 0.00 4.24
411 412 1.915141 ATCAGGAACACCAAAGCAGG 58.085 50.000 0.00 0.00 0.00 4.85
412 413 0.550914 TCAGGAACACCAAAGCAGGT 59.449 50.000 0.00 0.00 44.48 4.00
413 414 1.771854 TCAGGAACACCAAAGCAGGTA 59.228 47.619 0.00 0.00 40.77 3.08
414 415 2.375174 TCAGGAACACCAAAGCAGGTAT 59.625 45.455 0.00 0.00 40.77 2.73
415 416 2.749621 CAGGAACACCAAAGCAGGTATC 59.250 50.000 0.00 0.00 40.77 2.24
416 417 2.375174 AGGAACACCAAAGCAGGTATCA 59.625 45.455 0.00 0.00 40.77 2.15
417 418 3.010584 AGGAACACCAAAGCAGGTATCAT 59.989 43.478 0.00 0.00 40.77 2.45
418 419 3.129287 GGAACACCAAAGCAGGTATCATG 59.871 47.826 0.00 0.00 40.77 3.07
419 420 3.719268 ACACCAAAGCAGGTATCATGA 57.281 42.857 0.00 0.00 40.77 3.07
420 421 4.032960 ACACCAAAGCAGGTATCATGAA 57.967 40.909 0.00 0.00 40.77 2.57
421 422 3.758554 ACACCAAAGCAGGTATCATGAAC 59.241 43.478 0.00 0.00 40.77 3.18
422 423 3.009723 ACCAAAGCAGGTATCATGAACG 58.990 45.455 0.00 0.00 40.98 3.95
423 424 3.270027 CCAAAGCAGGTATCATGAACGA 58.730 45.455 0.00 0.00 0.00 3.85
424 425 3.879295 CCAAAGCAGGTATCATGAACGAT 59.121 43.478 0.00 0.00 0.00 3.73
425 426 5.056480 CCAAAGCAGGTATCATGAACGATA 58.944 41.667 0.00 0.00 0.00 2.92
426 427 5.527214 CCAAAGCAGGTATCATGAACGATAA 59.473 40.000 0.00 0.00 29.82 1.75
427 428 6.038161 CCAAAGCAGGTATCATGAACGATAAA 59.962 38.462 0.00 0.00 29.82 1.40
428 429 6.851222 AAGCAGGTATCATGAACGATAAAG 57.149 37.500 0.00 0.00 29.82 1.85
429 430 4.752101 AGCAGGTATCATGAACGATAAAGC 59.248 41.667 0.00 0.00 29.82 3.51
430 431 4.511454 GCAGGTATCATGAACGATAAAGCA 59.489 41.667 0.00 0.00 29.82 3.91
431 432 5.007626 GCAGGTATCATGAACGATAAAGCAA 59.992 40.000 0.00 0.00 29.82 3.91
432 433 6.458206 GCAGGTATCATGAACGATAAAGCAAA 60.458 38.462 0.00 0.00 29.82 3.68
433 434 7.642669 CAGGTATCATGAACGATAAAGCAAAT 58.357 34.615 0.00 0.00 29.82 2.32
434 435 7.588854 CAGGTATCATGAACGATAAAGCAAATG 59.411 37.037 0.00 0.00 29.82 2.32
435 436 7.498900 AGGTATCATGAACGATAAAGCAAATGA 59.501 33.333 0.00 0.00 29.82 2.57
436 437 7.587757 GGTATCATGAACGATAAAGCAAATGAC 59.412 37.037 0.00 0.00 29.82 3.06
437 438 6.741992 TCATGAACGATAAAGCAAATGACT 57.258 33.333 0.00 0.00 0.00 3.41
438 439 7.144722 TCATGAACGATAAAGCAAATGACTT 57.855 32.000 0.00 0.00 0.00 3.01
439 440 7.022979 TCATGAACGATAAAGCAAATGACTTG 58.977 34.615 0.00 0.00 38.15 3.16
440 441 6.552859 TGAACGATAAAGCAAATGACTTGA 57.447 33.333 0.00 0.00 37.17 3.02
441 442 6.964908 TGAACGATAAAGCAAATGACTTGAA 58.035 32.000 0.00 0.00 37.17 2.69
442 443 7.592938 TGAACGATAAAGCAAATGACTTGAAT 58.407 30.769 0.00 0.00 37.17 2.57
443 444 8.081633 TGAACGATAAAGCAAATGACTTGAATT 58.918 29.630 0.00 0.00 37.17 2.17
444 445 8.816640 AACGATAAAGCAAATGACTTGAATTT 57.183 26.923 0.00 0.00 37.17 1.82
445 446 8.231304 ACGATAAAGCAAATGACTTGAATTTG 57.769 30.769 4.84 4.84 44.34 2.32
453 454 7.429636 CAAATGACTTGAATTTGCCAGATTT 57.570 32.000 0.00 0.00 37.97 2.17
454 455 7.295201 CAAATGACTTGAATTTGCCAGATTTG 58.705 34.615 0.00 0.00 37.97 2.32
455 456 5.534207 TGACTTGAATTTGCCAGATTTGT 57.466 34.783 0.00 0.00 0.00 2.83
456 457 5.916318 TGACTTGAATTTGCCAGATTTGTT 58.084 33.333 0.00 0.00 0.00 2.83
457 458 5.754406 TGACTTGAATTTGCCAGATTTGTTG 59.246 36.000 0.00 0.00 0.00 3.33
458 459 5.058490 ACTTGAATTTGCCAGATTTGTTGG 58.942 37.500 0.00 0.00 38.78 3.77
470 471 7.566760 CCAGATTTGTTGGCTAATGTATACA 57.433 36.000 8.27 8.27 0.00 2.29
471 472 8.169977 CCAGATTTGTTGGCTAATGTATACAT 57.830 34.615 12.75 12.75 38.41 2.29
472 473 9.283768 CCAGATTTGTTGGCTAATGTATACATA 57.716 33.333 18.56 6.78 35.10 2.29
477 478 9.899661 TTTGTTGGCTAATGTATACATAGACTT 57.100 29.630 18.56 6.36 35.10 3.01
478 479 8.887036 TGTTGGCTAATGTATACATAGACTTG 57.113 34.615 18.56 5.70 35.10 3.16
479 480 8.482943 TGTTGGCTAATGTATACATAGACTTGT 58.517 33.333 18.56 4.17 35.10 3.16
480 481 8.979574 GTTGGCTAATGTATACATAGACTTGTC 58.020 37.037 18.56 6.58 35.10 3.18
481 482 8.245195 TGGCTAATGTATACATAGACTTGTCA 57.755 34.615 18.56 8.96 35.10 3.58
482 483 8.870116 TGGCTAATGTATACATAGACTTGTCAT 58.130 33.333 18.56 2.06 35.10 3.06
483 484 9.712305 GGCTAATGTATACATAGACTTGTCATT 57.288 33.333 18.56 2.36 35.10 2.57
490 491 9.383462 GTATACATAGACTTGTCATTACTCACG 57.617 37.037 0.00 0.00 0.00 4.35
491 492 6.268825 ACATAGACTTGTCATTACTCACGT 57.731 37.500 3.49 0.00 0.00 4.49
492 493 6.688578 ACATAGACTTGTCATTACTCACGTT 58.311 36.000 3.49 0.00 0.00 3.99
493 494 7.823665 ACATAGACTTGTCATTACTCACGTTA 58.176 34.615 3.49 0.00 0.00 3.18
494 495 8.301720 ACATAGACTTGTCATTACTCACGTTAA 58.698 33.333 3.49 0.00 0.00 2.01
495 496 9.302345 CATAGACTTGTCATTACTCACGTTAAT 57.698 33.333 3.49 0.00 0.00 1.40
496 497 7.813852 AGACTTGTCATTACTCACGTTAATC 57.186 36.000 3.49 0.00 0.00 1.75
497 498 7.375834 AGACTTGTCATTACTCACGTTAATCA 58.624 34.615 3.49 0.00 0.00 2.57
498 499 7.328737 AGACTTGTCATTACTCACGTTAATCAC 59.671 37.037 3.49 0.00 0.00 3.06
499 500 7.152645 ACTTGTCATTACTCACGTTAATCACT 58.847 34.615 0.00 0.00 0.00 3.41
500 501 6.944557 TGTCATTACTCACGTTAATCACTG 57.055 37.500 0.00 0.00 0.00 3.66
501 502 6.452242 TGTCATTACTCACGTTAATCACTGT 58.548 36.000 0.00 0.00 0.00 3.55
502 503 7.595604 TGTCATTACTCACGTTAATCACTGTA 58.404 34.615 0.00 0.00 0.00 2.74
503 504 8.248253 TGTCATTACTCACGTTAATCACTGTAT 58.752 33.333 0.00 0.00 0.00 2.29
504 505 9.084164 GTCATTACTCACGTTAATCACTGTATT 57.916 33.333 0.00 0.00 0.00 1.89
505 506 9.647797 TCATTACTCACGTTAATCACTGTATTT 57.352 29.630 0.00 0.00 0.00 1.40
523 524 2.892784 TTTTTAAAGTTGGGGGCGTG 57.107 45.000 0.00 0.00 0.00 5.34
524 525 1.041437 TTTTAAAGTTGGGGGCGTGG 58.959 50.000 0.00 0.00 0.00 4.94
525 526 1.465200 TTTAAAGTTGGGGGCGTGGC 61.465 55.000 0.00 0.00 0.00 5.01
526 527 2.360439 TTAAAGTTGGGGGCGTGGCT 62.360 55.000 0.00 0.00 0.00 4.75
527 528 1.490416 TAAAGTTGGGGGCGTGGCTA 61.490 55.000 0.00 0.00 0.00 3.93
528 529 2.360439 AAAGTTGGGGGCGTGGCTAA 62.360 55.000 0.00 0.00 0.00 3.09
529 530 3.060000 GTTGGGGGCGTGGCTAAC 61.060 66.667 0.00 0.00 0.00 2.34
560 561 4.957684 CCAGATGGCGCGCTCGAT 62.958 66.667 32.29 19.98 38.10 3.59
561 562 2.963854 CAGATGGCGCGCTCGATT 60.964 61.111 32.29 11.25 38.10 3.34
562 563 2.202932 AGATGGCGCGCTCGATTT 60.203 55.556 32.29 12.82 38.10 2.17
563 564 2.240500 AGATGGCGCGCTCGATTTC 61.241 57.895 32.29 17.35 38.10 2.17
564 565 3.228688 GATGGCGCGCTCGATTTCC 62.229 63.158 32.29 12.15 38.10 3.13
567 568 4.267013 GCGCGCTCGATTTCCGAC 62.267 66.667 26.67 0.00 43.23 4.79
568 569 3.617538 CGCGCTCGATTTCCGACC 61.618 66.667 5.56 0.00 43.23 4.79
569 570 3.617538 GCGCTCGATTTCCGACCG 61.618 66.667 0.00 0.00 45.95 4.79
570 571 3.617538 CGCTCGATTTCCGACCGC 61.618 66.667 0.00 0.00 43.23 5.68
571 572 2.508439 GCTCGATTTCCGACCGCA 60.508 61.111 0.00 0.00 43.23 5.69
572 573 2.799540 GCTCGATTTCCGACCGCAC 61.800 63.158 0.00 0.00 43.23 5.34
573 574 2.505337 TCGATTTCCGACCGCACG 60.505 61.111 0.00 0.00 43.23 5.34
574 575 2.807895 CGATTTCCGACCGCACGT 60.808 61.111 0.00 0.00 41.76 4.49
575 576 1.514657 CGATTTCCGACCGCACGTA 60.515 57.895 0.00 0.00 41.76 3.57
576 577 0.868602 CGATTTCCGACCGCACGTAT 60.869 55.000 0.00 0.00 41.76 3.06
577 578 0.850856 GATTTCCGACCGCACGTATC 59.149 55.000 0.00 0.00 0.00 2.24
578 579 0.529119 ATTTCCGACCGCACGTATCC 60.529 55.000 0.00 0.00 0.00 2.59
579 580 2.870667 TTTCCGACCGCACGTATCCG 62.871 60.000 0.00 0.00 40.83 4.18
580 581 3.879682 CCGACCGCACGTATCCGA 61.880 66.667 4.30 0.00 37.88 4.55
581 582 2.649975 CGACCGCACGTATCCGAC 60.650 66.667 4.30 0.00 37.88 4.79
582 583 2.486504 GACCGCACGTATCCGACA 59.513 61.111 4.30 0.00 37.88 4.35
583 584 1.585521 GACCGCACGTATCCGACAG 60.586 63.158 4.30 0.00 37.88 3.51
584 585 2.954868 CCGCACGTATCCGACAGC 60.955 66.667 4.30 0.00 37.88 4.40
585 586 2.202557 CGCACGTATCCGACAGCA 60.203 61.111 0.00 0.00 37.88 4.41
586 587 1.803922 CGCACGTATCCGACAGCAA 60.804 57.895 0.00 0.00 37.88 3.91
587 588 1.348538 CGCACGTATCCGACAGCAAA 61.349 55.000 0.00 0.00 37.88 3.68
588 589 0.793861 GCACGTATCCGACAGCAAAA 59.206 50.000 0.00 0.00 37.88 2.44
589 590 1.463528 GCACGTATCCGACAGCAAAAC 60.464 52.381 0.00 0.00 37.88 2.43
590 591 1.065358 ACGTATCCGACAGCAAAACG 58.935 50.000 0.00 0.00 37.88 3.60
591 592 1.336148 ACGTATCCGACAGCAAAACGA 60.336 47.619 0.00 0.00 37.88 3.85
592 593 1.058695 CGTATCCGACAGCAAAACGAC 59.941 52.381 0.00 0.00 35.63 4.34
593 594 2.063266 GTATCCGACAGCAAAACGACA 58.937 47.619 0.00 0.00 0.00 4.35
594 595 1.588674 ATCCGACAGCAAAACGACAA 58.411 45.000 0.00 0.00 0.00 3.18
595 596 0.934496 TCCGACAGCAAAACGACAAG 59.066 50.000 0.00 0.00 0.00 3.16
596 597 0.655733 CCGACAGCAAAACGACAAGT 59.344 50.000 0.00 0.00 0.00 3.16
597 598 1.063469 CCGACAGCAAAACGACAAGTT 59.937 47.619 0.00 0.00 46.76 2.66
608 609 4.749245 AACGACAAGTTTAGCAATCAGG 57.251 40.909 0.00 0.00 40.88 3.86
609 610 2.484264 ACGACAAGTTTAGCAATCAGGC 59.516 45.455 0.00 0.00 0.00 4.85
610 611 2.474526 CGACAAGTTTAGCAATCAGGCG 60.475 50.000 0.00 0.00 39.27 5.52
611 612 1.200020 ACAAGTTTAGCAATCAGGCGC 59.800 47.619 0.00 0.00 39.27 6.53
612 613 0.811281 AAGTTTAGCAATCAGGCGCC 59.189 50.000 21.89 21.89 39.27 6.53
613 614 1.032114 AGTTTAGCAATCAGGCGCCC 61.032 55.000 26.15 6.38 39.27 6.13
614 615 1.032114 GTTTAGCAATCAGGCGCCCT 61.032 55.000 26.15 14.72 39.27 5.19
615 616 0.748005 TTTAGCAATCAGGCGCCCTC 60.748 55.000 26.15 5.93 39.27 4.30
616 617 2.923426 TTAGCAATCAGGCGCCCTCG 62.923 60.000 26.15 12.84 39.27 4.63
618 619 2.892425 CAATCAGGCGCCCTCGTC 60.892 66.667 26.15 0.00 41.36 4.20
619 620 4.162690 AATCAGGCGCCCTCGTCC 62.163 66.667 26.15 0.00 42.15 4.79
621 622 3.733507 ATCAGGCGCCCTCGTCCTA 62.734 63.158 26.15 0.00 42.15 2.94
622 623 3.227276 CAGGCGCCCTCGTCCTAT 61.227 66.667 26.15 0.00 42.15 2.57
623 624 2.444140 AGGCGCCCTCGTCCTATT 60.444 61.111 26.15 0.00 42.15 1.73
624 625 2.029221 GGCGCCCTCGTCCTATTC 59.971 66.667 18.11 0.00 38.14 1.75
625 626 2.029221 GCGCCCTCGTCCTATTCC 59.971 66.667 0.00 0.00 38.14 3.01
626 627 2.735237 CGCCCTCGTCCTATTCCC 59.265 66.667 0.00 0.00 0.00 3.97
627 628 1.833049 CGCCCTCGTCCTATTCCCT 60.833 63.158 0.00 0.00 0.00 4.20
628 629 1.400530 CGCCCTCGTCCTATTCCCTT 61.401 60.000 0.00 0.00 0.00 3.95
629 630 0.837940 GCCCTCGTCCTATTCCCTTT 59.162 55.000 0.00 0.00 0.00 3.11
630 631 1.202663 GCCCTCGTCCTATTCCCTTTC 60.203 57.143 0.00 0.00 0.00 2.62
631 632 2.399580 CCCTCGTCCTATTCCCTTTCT 58.600 52.381 0.00 0.00 0.00 2.52
632 633 2.103263 CCCTCGTCCTATTCCCTTTCTG 59.897 54.545 0.00 0.00 0.00 3.02
633 634 2.483889 CCTCGTCCTATTCCCTTTCTGC 60.484 54.545 0.00 0.00 0.00 4.26
634 635 2.432510 CTCGTCCTATTCCCTTTCTGCT 59.567 50.000 0.00 0.00 0.00 4.24
635 636 2.838202 TCGTCCTATTCCCTTTCTGCTT 59.162 45.455 0.00 0.00 0.00 3.91
636 637 3.263425 TCGTCCTATTCCCTTTCTGCTTT 59.737 43.478 0.00 0.00 0.00 3.51
637 638 3.623510 CGTCCTATTCCCTTTCTGCTTTC 59.376 47.826 0.00 0.00 0.00 2.62
638 639 4.624125 CGTCCTATTCCCTTTCTGCTTTCT 60.624 45.833 0.00 0.00 0.00 2.52
639 640 4.637977 GTCCTATTCCCTTTCTGCTTTCTG 59.362 45.833 0.00 0.00 0.00 3.02
640 641 3.950395 CCTATTCCCTTTCTGCTTTCTGG 59.050 47.826 0.00 0.00 0.00 3.86
641 642 3.814504 ATTCCCTTTCTGCTTTCTGGA 57.185 42.857 0.00 0.00 0.00 3.86
642 643 3.814504 TTCCCTTTCTGCTTTCTGGAT 57.185 42.857 0.00 0.00 0.00 3.41
643 644 3.356529 TCCCTTTCTGCTTTCTGGATC 57.643 47.619 0.00 0.00 0.00 3.36
644 645 2.012673 CCCTTTCTGCTTTCTGGATCG 58.987 52.381 0.00 0.00 0.00 3.69
645 646 2.355108 CCCTTTCTGCTTTCTGGATCGA 60.355 50.000 0.00 0.00 0.00 3.59
646 647 3.539604 CCTTTCTGCTTTCTGGATCGAT 58.460 45.455 0.00 0.00 0.00 3.59
647 648 3.559242 CCTTTCTGCTTTCTGGATCGATC 59.441 47.826 17.36 17.36 0.00 3.69
649 650 1.414181 TCTGCTTTCTGGATCGATCCC 59.586 52.381 35.72 21.98 46.59 3.85
650 651 0.104855 TGCTTTCTGGATCGATCCCG 59.895 55.000 35.72 30.51 46.59 5.14
651 652 0.105039 GCTTTCTGGATCGATCCCGT 59.895 55.000 35.72 0.00 46.59 5.28
652 653 1.870167 GCTTTCTGGATCGATCCCGTC 60.870 57.143 35.72 18.55 46.59 4.79
653 654 1.409064 CTTTCTGGATCGATCCCGTCA 59.591 52.381 35.72 19.79 46.59 4.35
707 708 7.233962 AGGTTAACAAAATCCCGATTTAACCTT 59.766 33.333 19.96 10.82 44.95 3.50
712 713 7.276658 ACAAAATCCCGATTTAACCTTGTTTT 58.723 30.769 3.19 0.00 39.88 2.43
713 714 7.771361 ACAAAATCCCGATTTAACCTTGTTTTT 59.229 29.630 3.19 0.00 39.88 1.94
1000 1041 3.596046 ACTCCATCCTCCACCCAAATTTA 59.404 43.478 0.00 0.00 0.00 1.40
1241 1288 8.871629 TTGTGTATATGTTGTCCATAGGTTTT 57.128 30.769 0.00 0.00 39.36 2.43
1474 1525 6.600822 AGATGATGTTGGTATGTTTGAGAAGG 59.399 38.462 0.00 0.00 0.00 3.46
1538 1592 6.773976 TGTTTGAGAAGAATGGTTTGTTCT 57.226 33.333 0.00 0.00 45.33 3.01
2055 2115 2.736144 ATCGACGGACAAGCTGTTAA 57.264 45.000 0.00 0.00 35.85 2.01
2158 2219 3.097461 CGATACCGGAGAGTGAGGT 57.903 57.895 9.46 0.00 41.73 3.85
2507 2568 4.590647 GGAGATACATCCTCATTGTCTGGA 59.409 45.833 0.00 0.00 36.35 3.86
2591 2652 2.755469 CCCCTCATGGCAAACCCG 60.755 66.667 0.00 0.00 35.87 5.28
2719 2780 4.123497 ACAAGTGCTATATGAACGAGCA 57.877 40.909 0.00 0.00 43.74 4.26
2949 3011 1.961394 TCGAGTGGCACTTTGTAGACT 59.039 47.619 22.98 0.00 0.00 3.24
3129 3191 2.281762 GGTTCGATCGAAGGAACAATCG 59.718 50.000 29.79 12.67 43.29 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.569122 GCTAGGTTATCAATTTTATCACCCTAA 57.431 33.333 0.00 0.00 0.00 2.69
57 58 8.945193 AGCTAGGTTATCAATTTTATCACCCTA 58.055 33.333 0.00 0.00 0.00 3.53
58 59 7.816411 AGCTAGGTTATCAATTTTATCACCCT 58.184 34.615 0.00 0.00 0.00 4.34
59 60 9.740710 ATAGCTAGGTTATCAATTTTATCACCC 57.259 33.333 0.00 0.00 0.00 4.61
64 65 9.084164 CGCGTATAGCTAGGTTATCAATTTTAT 57.916 33.333 0.00 0.00 45.59 1.40
65 66 8.084073 ACGCGTATAGCTAGGTTATCAATTTTA 58.916 33.333 11.67 0.00 45.59 1.52
66 67 6.927381 ACGCGTATAGCTAGGTTATCAATTTT 59.073 34.615 11.67 0.00 45.59 1.82
67 68 6.453092 ACGCGTATAGCTAGGTTATCAATTT 58.547 36.000 11.67 0.00 45.59 1.82
68 69 6.022163 ACGCGTATAGCTAGGTTATCAATT 57.978 37.500 11.67 0.00 45.59 2.32
69 70 5.640189 ACGCGTATAGCTAGGTTATCAAT 57.360 39.130 11.67 0.00 45.59 2.57
70 71 5.122869 CCTACGCGTATAGCTAGGTTATCAA 59.877 44.000 20.91 0.00 45.59 2.57
71 72 4.633126 CCTACGCGTATAGCTAGGTTATCA 59.367 45.833 20.91 0.00 45.59 2.15
72 73 4.872691 TCCTACGCGTATAGCTAGGTTATC 59.127 45.833 20.91 0.00 45.59 1.75
73 74 4.633565 GTCCTACGCGTATAGCTAGGTTAT 59.366 45.833 20.91 0.00 45.59 1.89
74 75 3.997021 GTCCTACGCGTATAGCTAGGTTA 59.003 47.826 20.91 0.00 45.59 2.85
75 76 2.810852 GTCCTACGCGTATAGCTAGGTT 59.189 50.000 20.91 0.00 45.59 3.50
76 77 2.038295 AGTCCTACGCGTATAGCTAGGT 59.962 50.000 20.91 0.00 45.59 3.08
77 78 2.697654 AGTCCTACGCGTATAGCTAGG 58.302 52.381 20.91 18.03 45.59 3.02
78 79 3.497640 ACAAGTCCTACGCGTATAGCTAG 59.502 47.826 20.91 8.56 45.59 3.42
79 80 3.470709 ACAAGTCCTACGCGTATAGCTA 58.529 45.455 20.91 0.00 45.59 3.32
80 81 2.295885 ACAAGTCCTACGCGTATAGCT 58.704 47.619 20.91 14.21 45.59 3.32
81 82 2.770699 ACAAGTCCTACGCGTATAGC 57.229 50.000 20.91 12.16 43.95 2.97
82 83 5.680229 CAGTTTACAAGTCCTACGCGTATAG 59.320 44.000 20.91 14.40 0.00 1.31
83 84 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
84 85 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
85 86 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
86 87 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
87 88 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
88 89 4.375706 CGTTTCAGTTTACAAGTCCTACGC 60.376 45.833 0.00 0.00 0.00 4.42
89 90 4.977963 TCGTTTCAGTTTACAAGTCCTACG 59.022 41.667 0.00 0.00 0.00 3.51
90 91 6.833342 TTCGTTTCAGTTTACAAGTCCTAC 57.167 37.500 0.00 0.00 0.00 3.18
91 92 6.425721 CCATTCGTTTCAGTTTACAAGTCCTA 59.574 38.462 0.00 0.00 0.00 2.94
92 93 5.238650 CCATTCGTTTCAGTTTACAAGTCCT 59.761 40.000 0.00 0.00 0.00 3.85
93 94 5.237779 TCCATTCGTTTCAGTTTACAAGTCC 59.762 40.000 0.00 0.00 0.00 3.85
94 95 6.018180 ACTCCATTCGTTTCAGTTTACAAGTC 60.018 38.462 0.00 0.00 0.00 3.01
95 96 5.820947 ACTCCATTCGTTTCAGTTTACAAGT 59.179 36.000 0.00 0.00 0.00 3.16
96 97 6.300354 ACTCCATTCGTTTCAGTTTACAAG 57.700 37.500 0.00 0.00 0.00 3.16
97 98 6.762187 TGTACTCCATTCGTTTCAGTTTACAA 59.238 34.615 0.00 0.00 0.00 2.41
98 99 6.282167 TGTACTCCATTCGTTTCAGTTTACA 58.718 36.000 0.00 0.00 0.00 2.41
99 100 6.423001 ACTGTACTCCATTCGTTTCAGTTTAC 59.577 38.462 0.00 0.00 32.15 2.01
100 101 6.518493 ACTGTACTCCATTCGTTTCAGTTTA 58.482 36.000 0.00 0.00 32.15 2.01
101 102 5.365619 ACTGTACTCCATTCGTTTCAGTTT 58.634 37.500 0.00 0.00 32.15 2.66
102 103 4.957296 ACTGTACTCCATTCGTTTCAGTT 58.043 39.130 0.00 0.00 32.15 3.16
103 104 4.602340 ACTGTACTCCATTCGTTTCAGT 57.398 40.909 0.00 0.00 0.00 3.41
104 105 7.330946 TCATTTACTGTACTCCATTCGTTTCAG 59.669 37.037 0.00 0.00 0.00 3.02
105 106 7.156000 TCATTTACTGTACTCCATTCGTTTCA 58.844 34.615 0.00 0.00 0.00 2.69
106 107 7.591006 TCATTTACTGTACTCCATTCGTTTC 57.409 36.000 0.00 0.00 0.00 2.78
107 108 7.280205 GGATCATTTACTGTACTCCATTCGTTT 59.720 37.037 0.00 0.00 0.00 3.60
108 109 6.761714 GGATCATTTACTGTACTCCATTCGTT 59.238 38.462 0.00 0.00 0.00 3.85
109 110 6.098409 AGGATCATTTACTGTACTCCATTCGT 59.902 38.462 0.00 0.00 0.00 3.85
110 111 6.516718 AGGATCATTTACTGTACTCCATTCG 58.483 40.000 0.00 0.00 0.00 3.34
111 112 8.738645 AAAGGATCATTTACTGTACTCCATTC 57.261 34.615 2.99 0.00 0.00 2.67
112 113 8.960591 CAAAAGGATCATTTACTGTACTCCATT 58.039 33.333 5.67 0.00 0.00 3.16
113 114 8.328758 TCAAAAGGATCATTTACTGTACTCCAT 58.671 33.333 5.67 0.00 0.00 3.41
114 115 7.685481 TCAAAAGGATCATTTACTGTACTCCA 58.315 34.615 5.67 0.00 0.00 3.86
115 116 8.561738 TTCAAAAGGATCATTTACTGTACTCC 57.438 34.615 5.67 0.00 0.00 3.85
117 118 9.739276 TGATTCAAAAGGATCATTTACTGTACT 57.261 29.630 5.67 0.00 0.00 2.73
127 128 8.867097 CCTTCCATTATGATTCAAAAGGATCAT 58.133 33.333 4.78 4.78 35.17 2.45
128 129 7.288389 CCCTTCCATTATGATTCAAAAGGATCA 59.712 37.037 0.00 0.00 35.17 2.92
129 130 7.256083 CCCCTTCCATTATGATTCAAAAGGATC 60.256 40.741 0.00 0.00 35.17 3.36
130 131 6.556116 CCCCTTCCATTATGATTCAAAAGGAT 59.444 38.462 0.00 0.00 35.17 3.24
131 132 5.898972 CCCCTTCCATTATGATTCAAAAGGA 59.101 40.000 0.00 0.00 35.17 3.36
132 133 5.662657 ACCCCTTCCATTATGATTCAAAAGG 59.337 40.000 0.00 0.00 33.41 3.11
133 134 6.380846 TCACCCCTTCCATTATGATTCAAAAG 59.619 38.462 0.00 0.00 0.00 2.27
134 135 6.259893 TCACCCCTTCCATTATGATTCAAAA 58.740 36.000 0.00 0.00 0.00 2.44
135 136 5.836705 TCACCCCTTCCATTATGATTCAAA 58.163 37.500 0.00 0.00 0.00 2.69
136 137 5.044179 ACTCACCCCTTCCATTATGATTCAA 60.044 40.000 0.00 0.00 0.00 2.69
137 138 4.478317 ACTCACCCCTTCCATTATGATTCA 59.522 41.667 0.00 0.00 0.00 2.57
138 139 4.823989 CACTCACCCCTTCCATTATGATTC 59.176 45.833 0.00 0.00 0.00 2.52
139 140 4.796606 CACTCACCCCTTCCATTATGATT 58.203 43.478 0.00 0.00 0.00 2.57
140 141 3.435601 GCACTCACCCCTTCCATTATGAT 60.436 47.826 0.00 0.00 0.00 2.45
141 142 2.092429 GCACTCACCCCTTCCATTATGA 60.092 50.000 0.00 0.00 0.00 2.15
142 143 2.301346 GCACTCACCCCTTCCATTATG 58.699 52.381 0.00 0.00 0.00 1.90
143 144 1.922447 TGCACTCACCCCTTCCATTAT 59.078 47.619 0.00 0.00 0.00 1.28
144 145 1.004277 GTGCACTCACCCCTTCCATTA 59.996 52.381 10.32 0.00 37.24 1.90
145 146 0.251341 GTGCACTCACCCCTTCCATT 60.251 55.000 10.32 0.00 37.24 3.16
146 147 1.380302 GTGCACTCACCCCTTCCAT 59.620 57.895 10.32 0.00 37.24 3.41
147 148 1.426251 ATGTGCACTCACCCCTTCCA 61.426 55.000 19.41 0.00 42.46 3.53
148 149 0.962356 CATGTGCACTCACCCCTTCC 60.962 60.000 19.41 0.00 42.46 3.46
149 150 0.250901 ACATGTGCACTCACCCCTTC 60.251 55.000 19.41 0.00 42.46 3.46
150 151 1.064003 TACATGTGCACTCACCCCTT 58.936 50.000 19.41 0.00 42.46 3.95
151 152 0.324943 GTACATGTGCACTCACCCCT 59.675 55.000 19.41 0.00 42.46 4.79
152 153 0.036164 TGTACATGTGCACTCACCCC 59.964 55.000 19.41 2.38 42.46 4.95
153 154 2.113860 ATGTACATGTGCACTCACCC 57.886 50.000 19.33 4.00 42.46 4.61
154 155 3.595173 TGTATGTACATGTGCACTCACC 58.405 45.455 19.33 6.06 42.46 4.02
155 156 6.902224 TTATGTATGTACATGTGCACTCAC 57.098 37.500 19.33 16.30 45.77 3.51
156 157 7.913674 TTTTATGTATGTACATGTGCACTCA 57.086 32.000 19.33 19.18 45.77 3.41
178 179 5.458041 ACAAGTGCAGTGCTCATATTTTT 57.542 34.783 17.60 0.00 0.00 1.94
179 180 6.207417 AGTTACAAGTGCAGTGCTCATATTTT 59.793 34.615 17.60 0.00 0.00 1.82
180 181 5.707298 AGTTACAAGTGCAGTGCTCATATTT 59.293 36.000 17.60 0.01 0.00 1.40
181 182 5.248640 AGTTACAAGTGCAGTGCTCATATT 58.751 37.500 17.60 0.39 0.00 1.28
182 183 4.836825 AGTTACAAGTGCAGTGCTCATAT 58.163 39.130 17.60 0.00 0.00 1.78
183 184 4.271696 AGTTACAAGTGCAGTGCTCATA 57.728 40.909 17.60 4.39 0.00 2.15
184 185 3.131709 AGTTACAAGTGCAGTGCTCAT 57.868 42.857 17.60 2.39 0.00 2.90
185 186 2.620251 AGTTACAAGTGCAGTGCTCA 57.380 45.000 17.60 0.00 0.00 4.26
186 187 3.561725 AGAAAGTTACAAGTGCAGTGCTC 59.438 43.478 17.60 13.26 0.00 4.26
187 188 3.545703 AGAAAGTTACAAGTGCAGTGCT 58.454 40.909 17.60 0.00 0.00 4.40
188 189 3.971032 AGAAAGTTACAAGTGCAGTGC 57.029 42.857 8.58 8.58 0.00 4.40
189 190 8.935844 TGATATAAGAAAGTTACAAGTGCAGTG 58.064 33.333 0.00 0.00 0.00 3.66
190 191 9.502091 TTGATATAAGAAAGTTACAAGTGCAGT 57.498 29.630 0.00 0.00 0.00 4.40
191 192 9.760660 GTTGATATAAGAAAGTTACAAGTGCAG 57.239 33.333 0.00 0.00 0.00 4.41
192 193 8.726988 GGTTGATATAAGAAAGTTACAAGTGCA 58.273 33.333 0.00 0.00 0.00 4.57
193 194 8.726988 TGGTTGATATAAGAAAGTTACAAGTGC 58.273 33.333 0.00 0.00 0.00 4.40
202 203 9.739276 TCAGAAACATGGTTGATATAAGAAAGT 57.261 29.630 0.00 0.00 0.00 2.66
206 207 9.958180 TCTTTCAGAAACATGGTTGATATAAGA 57.042 29.630 0.00 0.00 0.00 2.10
234 235 9.545105 TTTTTGATGTCAGTTATCAGCATTTTT 57.455 25.926 0.00 0.00 36.07 1.94
257 258 9.855021 GTAGCTACACATCCAATATTTGTTTTT 57.145 29.630 19.15 0.00 0.00 1.94
258 259 8.466798 GGTAGCTACACATCCAATATTTGTTTT 58.533 33.333 24.75 0.00 0.00 2.43
259 260 7.613801 TGGTAGCTACACATCCAATATTTGTTT 59.386 33.333 24.75 0.00 0.00 2.83
260 261 7.116075 TGGTAGCTACACATCCAATATTTGTT 58.884 34.615 24.75 0.00 0.00 2.83
261 262 6.658849 TGGTAGCTACACATCCAATATTTGT 58.341 36.000 24.75 0.00 0.00 2.83
262 263 7.566760 TTGGTAGCTACACATCCAATATTTG 57.433 36.000 24.75 0.00 33.95 2.32
263 264 6.263168 GCTTGGTAGCTACACATCCAATATTT 59.737 38.462 24.75 0.00 44.27 1.40
264 265 5.765182 GCTTGGTAGCTACACATCCAATATT 59.235 40.000 24.75 0.00 44.27 1.28
265 266 5.308825 GCTTGGTAGCTACACATCCAATAT 58.691 41.667 24.75 0.00 44.27 1.28
266 267 4.703897 GCTTGGTAGCTACACATCCAATA 58.296 43.478 24.75 4.56 44.27 1.90
267 268 3.545703 GCTTGGTAGCTACACATCCAAT 58.454 45.455 24.75 0.00 44.27 3.16
268 269 2.985896 GCTTGGTAGCTACACATCCAA 58.014 47.619 24.75 17.32 44.27 3.53
269 270 2.691409 GCTTGGTAGCTACACATCCA 57.309 50.000 24.75 10.89 44.27 3.41
280 281 1.168714 GTGCCTCCTTTGCTTGGTAG 58.831 55.000 0.00 0.00 0.00 3.18
281 282 0.251165 GGTGCCTCCTTTGCTTGGTA 60.251 55.000 0.00 0.00 0.00 3.25
282 283 1.531602 GGTGCCTCCTTTGCTTGGT 60.532 57.895 0.00 0.00 0.00 3.67
283 284 1.114722 TTGGTGCCTCCTTTGCTTGG 61.115 55.000 0.00 0.00 37.07 3.61
284 285 0.971386 ATTGGTGCCTCCTTTGCTTG 59.029 50.000 0.00 0.00 37.07 4.01
285 286 0.971386 CATTGGTGCCTCCTTTGCTT 59.029 50.000 0.00 0.00 37.07 3.91
286 287 0.112995 TCATTGGTGCCTCCTTTGCT 59.887 50.000 0.00 0.00 37.07 3.91
287 288 0.529378 CTCATTGGTGCCTCCTTTGC 59.471 55.000 0.00 0.00 37.07 3.68
288 289 2.205022 TCTCATTGGTGCCTCCTTTG 57.795 50.000 0.00 0.00 37.07 2.77
289 290 2.978156 TTCTCATTGGTGCCTCCTTT 57.022 45.000 0.00 0.00 37.07 3.11
290 291 2.800250 CTTTCTCATTGGTGCCTCCTT 58.200 47.619 0.00 0.00 37.07 3.36
291 292 1.615384 GCTTTCTCATTGGTGCCTCCT 60.615 52.381 0.00 0.00 37.07 3.69
292 293 0.813821 GCTTTCTCATTGGTGCCTCC 59.186 55.000 0.00 0.00 0.00 4.30
293 294 0.449388 CGCTTTCTCATTGGTGCCTC 59.551 55.000 0.00 0.00 0.00 4.70
294 295 0.036732 TCGCTTTCTCATTGGTGCCT 59.963 50.000 0.00 0.00 0.00 4.75
295 296 0.169009 GTCGCTTTCTCATTGGTGCC 59.831 55.000 0.00 0.00 0.00 5.01
296 297 0.169009 GGTCGCTTTCTCATTGGTGC 59.831 55.000 0.00 0.00 0.00 5.01
297 298 1.466167 CAGGTCGCTTTCTCATTGGTG 59.534 52.381 0.00 0.00 0.00 4.17
298 299 1.072331 ACAGGTCGCTTTCTCATTGGT 59.928 47.619 0.00 0.00 0.00 3.67
299 300 1.813513 ACAGGTCGCTTTCTCATTGG 58.186 50.000 0.00 0.00 0.00 3.16
300 301 2.549754 ACAACAGGTCGCTTTCTCATTG 59.450 45.455 0.00 0.00 0.00 2.82
301 302 2.851195 ACAACAGGTCGCTTTCTCATT 58.149 42.857 0.00 0.00 0.00 2.57
302 303 2.550830 ACAACAGGTCGCTTTCTCAT 57.449 45.000 0.00 0.00 0.00 2.90
303 304 3.128349 GTTACAACAGGTCGCTTTCTCA 58.872 45.455 0.00 0.00 0.00 3.27
304 305 2.479275 GGTTACAACAGGTCGCTTTCTC 59.521 50.000 0.00 0.00 0.00 2.87
305 306 2.490991 GGTTACAACAGGTCGCTTTCT 58.509 47.619 0.00 0.00 0.00 2.52
306 307 1.193874 CGGTTACAACAGGTCGCTTTC 59.806 52.381 0.00 0.00 0.00 2.62
307 308 1.223187 CGGTTACAACAGGTCGCTTT 58.777 50.000 0.00 0.00 0.00 3.51
308 309 0.105408 ACGGTTACAACAGGTCGCTT 59.895 50.000 0.00 0.00 0.00 4.68
309 310 0.105408 AACGGTTACAACAGGTCGCT 59.895 50.000 0.00 0.00 0.00 4.93
310 311 0.233848 CAACGGTTACAACAGGTCGC 59.766 55.000 0.00 0.00 0.00 5.19
311 312 1.574134 ACAACGGTTACAACAGGTCG 58.426 50.000 0.00 0.00 0.00 4.79
312 313 2.033492 CGAACAACGGTTACAACAGGTC 60.033 50.000 0.00 0.00 37.36 3.85
313 314 1.935199 CGAACAACGGTTACAACAGGT 59.065 47.619 0.00 0.00 37.36 4.00
314 315 2.656192 CGAACAACGGTTACAACAGG 57.344 50.000 0.00 0.00 37.36 4.00
337 338 3.132925 CGTTACTCCCTCCGTTCAAAAA 58.867 45.455 0.00 0.00 0.00 1.94
338 339 2.364970 TCGTTACTCCCTCCGTTCAAAA 59.635 45.455 0.00 0.00 0.00 2.44
339 340 1.962807 TCGTTACTCCCTCCGTTCAAA 59.037 47.619 0.00 0.00 0.00 2.69
340 341 1.619654 TCGTTACTCCCTCCGTTCAA 58.380 50.000 0.00 0.00 0.00 2.69
341 342 1.542915 CTTCGTTACTCCCTCCGTTCA 59.457 52.381 0.00 0.00 0.00 3.18
342 343 1.815003 TCTTCGTTACTCCCTCCGTTC 59.185 52.381 0.00 0.00 0.00 3.95
343 344 1.543358 GTCTTCGTTACTCCCTCCGTT 59.457 52.381 0.00 0.00 0.00 4.44
344 345 1.172175 GTCTTCGTTACTCCCTCCGT 58.828 55.000 0.00 0.00 0.00 4.69
345 346 1.171308 TGTCTTCGTTACTCCCTCCG 58.829 55.000 0.00 0.00 0.00 4.63
346 347 2.561858 AGTTGTCTTCGTTACTCCCTCC 59.438 50.000 0.00 0.00 0.00 4.30
347 348 3.938289 AGTTGTCTTCGTTACTCCCTC 57.062 47.619 0.00 0.00 0.00 4.30
348 349 4.147321 TGTAGTTGTCTTCGTTACTCCCT 58.853 43.478 0.00 0.00 0.00 4.20
349 350 4.510038 TGTAGTTGTCTTCGTTACTCCC 57.490 45.455 0.00 0.00 0.00 4.30
350 351 6.833342 TTTTGTAGTTGTCTTCGTTACTCC 57.167 37.500 0.00 0.00 0.00 3.85
372 373 6.238925 CCTGATTTTACGGGACTTCTGTTTTT 60.239 38.462 0.00 0.00 38.49 1.94
373 374 5.240844 CCTGATTTTACGGGACTTCTGTTTT 59.759 40.000 0.00 0.00 38.49 2.43
374 375 4.760204 CCTGATTTTACGGGACTTCTGTTT 59.240 41.667 0.00 0.00 38.49 2.83
375 376 4.041198 TCCTGATTTTACGGGACTTCTGTT 59.959 41.667 0.00 0.00 40.00 3.16
376 377 3.581332 TCCTGATTTTACGGGACTTCTGT 59.419 43.478 0.00 0.00 40.00 3.41
377 378 4.202245 TCCTGATTTTACGGGACTTCTG 57.798 45.455 0.00 0.00 40.00 3.02
378 379 4.041198 TGTTCCTGATTTTACGGGACTTCT 59.959 41.667 0.00 0.00 43.92 2.85
379 380 4.153655 GTGTTCCTGATTTTACGGGACTTC 59.846 45.833 0.00 0.00 43.92 3.01
380 381 4.070009 GTGTTCCTGATTTTACGGGACTT 58.930 43.478 0.00 0.00 43.92 3.01
381 382 3.558533 GGTGTTCCTGATTTTACGGGACT 60.559 47.826 0.00 0.00 43.92 3.85
382 383 2.745821 GGTGTTCCTGATTTTACGGGAC 59.254 50.000 0.00 0.00 43.92 4.46
383 384 2.372504 TGGTGTTCCTGATTTTACGGGA 59.627 45.455 0.00 0.00 42.74 5.14
384 385 2.785562 TGGTGTTCCTGATTTTACGGG 58.214 47.619 0.00 0.00 37.63 5.28
385 386 4.794169 CTTTGGTGTTCCTGATTTTACGG 58.206 43.478 0.00 0.00 34.23 4.02
386 387 4.226761 GCTTTGGTGTTCCTGATTTTACG 58.773 43.478 0.00 0.00 34.23 3.18
387 388 5.195001 TGCTTTGGTGTTCCTGATTTTAC 57.805 39.130 0.00 0.00 34.23 2.01
388 389 4.280677 CCTGCTTTGGTGTTCCTGATTTTA 59.719 41.667 0.00 0.00 34.23 1.52
389 390 3.070015 CCTGCTTTGGTGTTCCTGATTTT 59.930 43.478 0.00 0.00 34.23 1.82
390 391 2.629617 CCTGCTTTGGTGTTCCTGATTT 59.370 45.455 0.00 0.00 34.23 2.17
391 392 2.242043 CCTGCTTTGGTGTTCCTGATT 58.758 47.619 0.00 0.00 34.23 2.57
392 393 1.145738 ACCTGCTTTGGTGTTCCTGAT 59.854 47.619 0.00 0.00 39.17 2.90
393 394 0.550914 ACCTGCTTTGGTGTTCCTGA 59.449 50.000 0.00 0.00 39.17 3.86
394 395 2.270352 TACCTGCTTTGGTGTTCCTG 57.730 50.000 6.83 0.00 41.05 3.86
395 396 2.375174 TGATACCTGCTTTGGTGTTCCT 59.625 45.455 6.83 0.00 41.05 3.36
396 397 2.790433 TGATACCTGCTTTGGTGTTCC 58.210 47.619 6.83 0.00 41.05 3.62
397 398 4.009675 TCATGATACCTGCTTTGGTGTTC 58.990 43.478 0.00 5.05 41.05 3.18
398 399 4.032960 TCATGATACCTGCTTTGGTGTT 57.967 40.909 0.00 0.00 41.05 3.32
399 400 3.719268 TCATGATACCTGCTTTGGTGT 57.281 42.857 0.00 0.86 41.05 4.16
400 401 3.181507 CGTTCATGATACCTGCTTTGGTG 60.182 47.826 0.00 0.00 41.05 4.17
401 402 3.009723 CGTTCATGATACCTGCTTTGGT 58.990 45.455 0.00 2.55 43.66 3.67
402 403 3.270027 TCGTTCATGATACCTGCTTTGG 58.730 45.455 0.00 0.00 0.00 3.28
403 404 6.603237 TTATCGTTCATGATACCTGCTTTG 57.397 37.500 0.00 0.00 30.77 2.77
404 405 6.238484 GCTTTATCGTTCATGATACCTGCTTT 60.238 38.462 0.00 0.00 30.77 3.51
405 406 5.237344 GCTTTATCGTTCATGATACCTGCTT 59.763 40.000 0.00 0.00 30.77 3.91
406 407 4.752101 GCTTTATCGTTCATGATACCTGCT 59.248 41.667 0.00 0.00 30.77 4.24
407 408 4.511454 TGCTTTATCGTTCATGATACCTGC 59.489 41.667 0.00 0.00 30.77 4.85
408 409 6.603237 TTGCTTTATCGTTCATGATACCTG 57.397 37.500 0.00 0.00 30.77 4.00
409 410 7.498900 TCATTTGCTTTATCGTTCATGATACCT 59.501 33.333 0.00 0.00 30.77 3.08
410 411 7.587757 GTCATTTGCTTTATCGTTCATGATACC 59.412 37.037 0.00 0.00 30.77 2.73
411 412 8.338259 AGTCATTTGCTTTATCGTTCATGATAC 58.662 33.333 0.00 0.00 30.77 2.24
412 413 8.437360 AGTCATTTGCTTTATCGTTCATGATA 57.563 30.769 0.00 0.00 0.00 2.15
413 414 7.325660 AGTCATTTGCTTTATCGTTCATGAT 57.674 32.000 0.00 0.00 0.00 2.45
414 415 6.741992 AGTCATTTGCTTTATCGTTCATGA 57.258 33.333 0.00 0.00 0.00 3.07
415 416 7.022979 TCAAGTCATTTGCTTTATCGTTCATG 58.977 34.615 0.00 0.00 36.70 3.07
416 417 7.144722 TCAAGTCATTTGCTTTATCGTTCAT 57.855 32.000 0.00 0.00 36.70 2.57
417 418 6.552859 TCAAGTCATTTGCTTTATCGTTCA 57.447 33.333 0.00 0.00 36.70 3.18
418 419 8.452989 AATTCAAGTCATTTGCTTTATCGTTC 57.547 30.769 0.00 0.00 36.70 3.95
419 420 8.702438 CAAATTCAAGTCATTTGCTTTATCGTT 58.298 29.630 0.00 0.00 35.41 3.85
420 421 8.231304 CAAATTCAAGTCATTTGCTTTATCGT 57.769 30.769 0.00 0.00 35.41 3.73
429 430 7.041644 ACAAATCTGGCAAATTCAAGTCATTTG 60.042 33.333 0.00 0.00 42.32 2.32
430 431 6.993902 ACAAATCTGGCAAATTCAAGTCATTT 59.006 30.769 0.00 0.00 0.00 2.32
431 432 6.527423 ACAAATCTGGCAAATTCAAGTCATT 58.473 32.000 0.00 0.00 0.00 2.57
432 433 6.105397 ACAAATCTGGCAAATTCAAGTCAT 57.895 33.333 0.00 0.00 0.00 3.06
433 434 5.534207 ACAAATCTGGCAAATTCAAGTCA 57.466 34.783 0.00 0.00 0.00 3.41
434 435 5.178067 CCAACAAATCTGGCAAATTCAAGTC 59.822 40.000 0.00 0.00 0.00 3.01
435 436 5.058490 CCAACAAATCTGGCAAATTCAAGT 58.942 37.500 0.00 0.00 0.00 3.16
436 437 5.600908 CCAACAAATCTGGCAAATTCAAG 57.399 39.130 0.00 0.00 0.00 3.02
445 446 7.255590 ATGTATACATTAGCCAACAAATCTGGC 60.256 37.037 12.75 5.70 45.95 4.85
446 447 7.566760 TGTATACATTAGCCAACAAATCTGG 57.433 36.000 0.08 0.00 36.99 3.86
451 452 9.899661 AAGTCTATGTATACATTAGCCAACAAA 57.100 29.630 22.90 0.94 37.76 2.83
452 453 9.325198 CAAGTCTATGTATACATTAGCCAACAA 57.675 33.333 22.90 1.65 37.76 2.83
453 454 8.482943 ACAAGTCTATGTATACATTAGCCAACA 58.517 33.333 22.90 2.35 37.76 3.33
454 455 8.888579 ACAAGTCTATGTATACATTAGCCAAC 57.111 34.615 22.90 12.00 37.76 3.77
455 456 8.700973 TGACAAGTCTATGTATACATTAGCCAA 58.299 33.333 22.90 3.78 37.76 4.52
456 457 8.245195 TGACAAGTCTATGTATACATTAGCCA 57.755 34.615 22.90 4.49 37.76 4.75
457 458 9.712305 AATGACAAGTCTATGTATACATTAGCC 57.288 33.333 22.90 8.92 37.76 3.93
464 465 9.383462 CGTGAGTAATGACAAGTCTATGTATAC 57.617 37.037 1.53 0.00 32.57 1.47
465 466 9.117183 ACGTGAGTAATGACAAGTCTATGTATA 57.883 33.333 1.53 0.00 46.88 1.47
466 467 7.997482 ACGTGAGTAATGACAAGTCTATGTAT 58.003 34.615 1.53 0.00 46.88 2.29
467 468 7.387119 ACGTGAGTAATGACAAGTCTATGTA 57.613 36.000 1.53 0.00 46.88 2.29
468 469 6.268825 ACGTGAGTAATGACAAGTCTATGT 57.731 37.500 1.53 0.00 46.88 2.29
504 505 1.413077 CCACGCCCCCAACTTTAAAAA 59.587 47.619 0.00 0.00 0.00 1.94
505 506 1.041437 CCACGCCCCCAACTTTAAAA 58.959 50.000 0.00 0.00 0.00 1.52
506 507 1.465200 GCCACGCCCCCAACTTTAAA 61.465 55.000 0.00 0.00 0.00 1.52
507 508 1.904378 GCCACGCCCCCAACTTTAA 60.904 57.895 0.00 0.00 0.00 1.52
508 509 1.490416 TAGCCACGCCCCCAACTTTA 61.490 55.000 0.00 0.00 0.00 1.85
509 510 2.360439 TTAGCCACGCCCCCAACTTT 62.360 55.000 0.00 0.00 0.00 2.66
510 511 2.836187 TTAGCCACGCCCCCAACTT 61.836 57.895 0.00 0.00 0.00 2.66
511 512 3.253838 TTAGCCACGCCCCCAACT 61.254 61.111 0.00 0.00 0.00 3.16
512 513 3.060000 GTTAGCCACGCCCCCAAC 61.060 66.667 0.00 0.00 0.00 3.77
513 514 4.708386 CGTTAGCCACGCCCCCAA 62.708 66.667 0.00 0.00 43.37 4.12
543 544 4.957684 ATCGAGCGCGCCATCTGG 62.958 66.667 30.33 10.95 37.46 3.86
544 545 2.421835 GAAATCGAGCGCGCCATCTG 62.422 60.000 30.33 15.47 37.46 2.90
545 546 2.202932 AAATCGAGCGCGCCATCT 60.203 55.556 30.33 9.44 37.46 2.90
546 547 2.246687 GAAATCGAGCGCGCCATC 59.753 61.111 30.33 19.30 37.46 3.51
547 548 3.272334 GGAAATCGAGCGCGCCAT 61.272 61.111 30.33 15.09 37.46 4.40
556 557 1.921045 TACGTGCGGTCGGAAATCGA 61.921 55.000 0.00 0.00 46.77 3.59
557 558 0.868602 ATACGTGCGGTCGGAAATCG 60.869 55.000 0.00 0.00 40.90 3.34
558 559 0.850856 GATACGTGCGGTCGGAAATC 59.149 55.000 0.00 0.00 34.94 2.17
559 560 0.529119 GGATACGTGCGGTCGGAAAT 60.529 55.000 0.00 0.00 34.94 2.17
560 561 1.153784 GGATACGTGCGGTCGGAAA 60.154 57.895 0.00 0.00 34.94 3.13
561 562 2.491152 GGATACGTGCGGTCGGAA 59.509 61.111 0.00 0.00 34.94 4.30
573 574 2.063266 TGTCGTTTTGCTGTCGGATAC 58.937 47.619 0.00 0.00 0.00 2.24
574 575 2.442212 TGTCGTTTTGCTGTCGGATA 57.558 45.000 0.00 0.00 0.00 2.59
575 576 1.531149 CTTGTCGTTTTGCTGTCGGAT 59.469 47.619 0.00 0.00 0.00 4.18
576 577 0.934496 CTTGTCGTTTTGCTGTCGGA 59.066 50.000 0.00 0.00 0.00 4.55
577 578 0.655733 ACTTGTCGTTTTGCTGTCGG 59.344 50.000 0.00 0.00 0.00 4.79
578 579 2.452006 AACTTGTCGTTTTGCTGTCG 57.548 45.000 0.00 0.00 29.63 4.35
584 585 5.399301 CCTGATTGCTAAACTTGTCGTTTTG 59.601 40.000 0.00 0.00 43.06 2.44
585 586 5.519722 CCTGATTGCTAAACTTGTCGTTTT 58.480 37.500 0.00 0.00 43.06 2.43
586 587 4.556699 GCCTGATTGCTAAACTTGTCGTTT 60.557 41.667 0.00 0.00 46.94 3.60
587 588 3.058224 GCCTGATTGCTAAACTTGTCGTT 60.058 43.478 0.00 0.00 37.47 3.85
588 589 2.484264 GCCTGATTGCTAAACTTGTCGT 59.516 45.455 0.00 0.00 0.00 4.34
589 590 2.474526 CGCCTGATTGCTAAACTTGTCG 60.475 50.000 0.00 0.00 0.00 4.35
590 591 2.729156 GCGCCTGATTGCTAAACTTGTC 60.729 50.000 0.00 0.00 0.00 3.18
591 592 1.200020 GCGCCTGATTGCTAAACTTGT 59.800 47.619 0.00 0.00 0.00 3.16
592 593 1.468054 GGCGCCTGATTGCTAAACTTG 60.468 52.381 22.15 0.00 0.00 3.16
593 594 0.811281 GGCGCCTGATTGCTAAACTT 59.189 50.000 22.15 0.00 0.00 2.66
594 595 1.032114 GGGCGCCTGATTGCTAAACT 61.032 55.000 28.56 0.00 0.00 2.66
595 596 1.032114 AGGGCGCCTGATTGCTAAAC 61.032 55.000 28.56 4.37 29.57 2.01
596 597 0.748005 GAGGGCGCCTGATTGCTAAA 60.748 55.000 28.56 0.00 31.76 1.85
597 598 1.153168 GAGGGCGCCTGATTGCTAA 60.153 57.895 28.56 0.00 31.76 3.09
598 599 2.505982 GAGGGCGCCTGATTGCTA 59.494 61.111 28.56 0.00 31.76 3.49
599 600 4.845580 CGAGGGCGCCTGATTGCT 62.846 66.667 28.56 14.02 31.76 3.91
601 602 2.892425 GACGAGGGCGCCTGATTG 60.892 66.667 28.56 18.26 42.48 2.67
602 603 4.162690 GGACGAGGGCGCCTGATT 62.163 66.667 28.56 9.84 42.48 2.57
603 604 3.733507 TAGGACGAGGGCGCCTGAT 62.734 63.158 28.56 13.16 41.70 2.90
604 605 3.733507 ATAGGACGAGGGCGCCTGA 62.734 63.158 28.56 2.95 41.70 3.86
605 606 2.701163 GAATAGGACGAGGGCGCCTG 62.701 65.000 28.56 18.85 41.70 4.85
606 607 2.444140 AATAGGACGAGGGCGCCT 60.444 61.111 28.56 12.77 43.23 5.52
607 608 2.029221 GAATAGGACGAGGGCGCC 59.971 66.667 21.18 21.18 42.48 6.53
608 609 2.029221 GGAATAGGACGAGGGCGC 59.971 66.667 0.00 0.00 42.48 6.53
609 610 1.400530 AAGGGAATAGGACGAGGGCG 61.401 60.000 0.00 0.00 44.79 6.13
610 611 0.837940 AAAGGGAATAGGACGAGGGC 59.162 55.000 0.00 0.00 0.00 5.19
611 612 2.103263 CAGAAAGGGAATAGGACGAGGG 59.897 54.545 0.00 0.00 0.00 4.30
612 613 2.483889 GCAGAAAGGGAATAGGACGAGG 60.484 54.545 0.00 0.00 0.00 4.63
613 614 2.432510 AGCAGAAAGGGAATAGGACGAG 59.567 50.000 0.00 0.00 0.00 4.18
614 615 2.467880 AGCAGAAAGGGAATAGGACGA 58.532 47.619 0.00 0.00 0.00 4.20
615 616 2.990066 AGCAGAAAGGGAATAGGACG 57.010 50.000 0.00 0.00 0.00 4.79
616 617 4.637977 CAGAAAGCAGAAAGGGAATAGGAC 59.362 45.833 0.00 0.00 0.00 3.85
617 618 4.324563 CCAGAAAGCAGAAAGGGAATAGGA 60.325 45.833 0.00 0.00 0.00 2.94
618 619 3.950395 CCAGAAAGCAGAAAGGGAATAGG 59.050 47.826 0.00 0.00 0.00 2.57
619 620 4.848357 TCCAGAAAGCAGAAAGGGAATAG 58.152 43.478 0.00 0.00 0.00 1.73
620 621 4.927267 TCCAGAAAGCAGAAAGGGAATA 57.073 40.909 0.00 0.00 0.00 1.75
621 622 3.814504 TCCAGAAAGCAGAAAGGGAAT 57.185 42.857 0.00 0.00 0.00 3.01
622 623 3.690460 GATCCAGAAAGCAGAAAGGGAA 58.310 45.455 0.00 0.00 0.00 3.97
623 624 2.355108 CGATCCAGAAAGCAGAAAGGGA 60.355 50.000 0.00 0.00 0.00 4.20
624 625 2.012673 CGATCCAGAAAGCAGAAAGGG 58.987 52.381 0.00 0.00 0.00 3.95
625 626 2.977914 TCGATCCAGAAAGCAGAAAGG 58.022 47.619 0.00 0.00 0.00 3.11
626 627 3.559242 GGATCGATCCAGAAAGCAGAAAG 59.441 47.826 34.65 0.00 46.38 2.62
627 628 3.535561 GGATCGATCCAGAAAGCAGAAA 58.464 45.455 34.65 0.00 46.38 2.52
628 629 3.185246 GGATCGATCCAGAAAGCAGAA 57.815 47.619 34.65 0.00 46.38 3.02
629 630 2.898729 GGATCGATCCAGAAAGCAGA 57.101 50.000 34.65 0.00 46.38 4.26
639 640 2.335369 CCGTGACGGGATCGATCC 59.665 66.667 32.57 32.57 44.15 3.36
649 650 1.864711 ACAGTGATTTTGTCCGTGACG 59.135 47.619 0.00 0.00 34.95 4.35
650 651 3.963383 AACAGTGATTTTGTCCGTGAC 57.037 42.857 0.00 0.00 0.00 3.67
651 652 5.178623 GTCATAACAGTGATTTTGTCCGTGA 59.821 40.000 0.00 0.00 0.00 4.35
652 653 5.382303 GTCATAACAGTGATTTTGTCCGTG 58.618 41.667 0.00 0.00 0.00 4.94
653 654 4.454504 GGTCATAACAGTGATTTTGTCCGT 59.545 41.667 0.00 0.00 0.00 4.69
684 685 7.953752 ACAAGGTTAAATCGGGATTTTGTTAA 58.046 30.769 11.51 0.00 40.99 2.01
786 822 4.641645 CAGGTCAACGGGCAGGCA 62.642 66.667 0.00 0.00 0.00 4.75
1149 1194 6.845908 ACTGCCTACCAAATCATCTATCAAT 58.154 36.000 0.00 0.00 0.00 2.57
1241 1288 5.947663 TCATCACCCCTCTTAGTTCAAAAA 58.052 37.500 0.00 0.00 0.00 1.94
1474 1525 9.049523 TCTTCTTCTTCATATGCACACATAATC 57.950 33.333 0.00 0.00 41.99 1.75
1538 1592 8.593945 ATTTTCTTCTCCAAGTTATGCCATAA 57.406 30.769 0.00 0.00 0.00 1.90
1609 1663 3.576078 TCATCCGCCATCCTACAAAAT 57.424 42.857 0.00 0.00 0.00 1.82
2055 2115 4.678269 CGACGCTGACACGACCGT 62.678 66.667 0.00 0.00 36.70 4.83
2158 2219 7.399191 TCCTCTGACTAGTTTTAGCCAAGAATA 59.601 37.037 0.00 0.00 0.00 1.75
2507 2568 3.016736 CACGGATAGGCTCCAAACAAAT 58.983 45.455 0.00 0.00 45.24 2.32
2591 2652 1.597027 CCCGTCATGATTACCCCGC 60.597 63.158 0.00 0.00 0.00 6.13
2719 2780 0.683973 CTCAGCAGTCAAGGTGTCCT 59.316 55.000 0.00 0.00 38.15 3.85
2949 3011 2.382882 TCCAAATTGTCTTGCCACACA 58.617 42.857 0.00 0.00 0.00 3.72
3080 3142 0.244450 ATGCACGGGACAAAGCATTG 59.756 50.000 0.00 0.00 44.63 2.82
3129 3191 3.644966 TTGCCCAATCCGATATATCCC 57.355 47.619 7.15 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.