Multiple sequence alignment - TraesCS4B01G155500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G155500 chr4B 100.000 2753 0 0 1 2753 278410514 278413266 0.000000e+00 5084.0
1 TraesCS4B01G155500 chr4D 90.136 1916 77 52 882 2737 293380456 293382319 0.000000e+00 2388.0
2 TraesCS4B01G155500 chr4D 93.671 158 6 2 317 473 293380185 293380339 1.650000e-57 233.0
3 TraesCS4B01G155500 chr4D 90.196 51 4 1 482 532 293380370 293380419 6.360000e-07 65.8
4 TraesCS4B01G155500 chr4A 91.852 945 31 18 898 1823 231019408 231020325 0.000000e+00 1277.0
5 TraesCS4B01G155500 chr4A 88.808 688 40 16 2057 2736 231020743 231021401 0.000000e+00 809.0
6 TraesCS4B01G155500 chr4A 89.697 165 17 0 601 765 637865294 637865130 7.720000e-51 211.0
7 TraesCS4B01G155500 chr4A 88.824 170 15 4 603 769 725274394 725274562 3.590000e-49 206.0
8 TraesCS4B01G155500 chr4A 89.474 114 10 1 764 877 47750231 47750342 2.860000e-30 143.0
9 TraesCS4B01G155500 chr4A 83.673 147 13 9 395 532 231018305 231018449 8.000000e-26 128.0
10 TraesCS4B01G155500 chr2B 97.838 185 4 0 1 185 109090841 109091025 1.230000e-83 320.0
11 TraesCS4B01G155500 chr2B 90.826 109 8 2 764 872 414893945 414894051 7.950000e-31 145.0
12 TraesCS4B01G155500 chr2B 81.944 144 25 1 1212 1354 99266252 99266395 1.340000e-23 121.0
13 TraesCS4B01G155500 chrUn 91.463 164 11 2 604 765 243337448 243337286 3.570000e-54 222.0
14 TraesCS4B01G155500 chrUn 91.463 164 11 2 604 765 248708853 248708691 3.570000e-54 222.0
15 TraesCS4B01G155500 chr6B 89.222 167 18 0 601 767 221394720 221394886 2.780000e-50 209.0
16 TraesCS4B01G155500 chr6B 90.826 109 8 2 764 872 132353466 132353572 7.950000e-31 145.0
17 TraesCS4B01G155500 chr6B 90.826 109 9 1 764 872 314547099 314546992 7.950000e-31 145.0
18 TraesCS4B01G155500 chr5B 89.091 165 17 1 601 765 665737014 665736851 1.290000e-48 204.0
19 TraesCS4B01G155500 chr3B 88.690 168 18 1 598 765 26854306 26854472 1.290000e-48 204.0
20 TraesCS4B01G155500 chr1B 88.690 168 18 1 601 768 637344686 637344852 1.290000e-48 204.0
21 TraesCS4B01G155500 chr1B 89.076 119 13 0 209 327 599630417 599630535 6.140000e-32 148.0
22 TraesCS4B01G155500 chr1B 89.076 119 13 0 209 327 599831388 599831506 6.140000e-32 148.0
23 TraesCS4B01G155500 chr1B 88.983 118 13 0 210 327 599701632 599701749 2.210000e-31 147.0
24 TraesCS4B01G155500 chr1B 88.983 118 13 0 210 327 599759976 599760093 2.210000e-31 147.0
25 TraesCS4B01G155500 chr1B 88.983 118 13 0 210 327 599919934 599920051 2.210000e-31 147.0
26 TraesCS4B01G155500 chr1B 90.826 109 8 2 764 872 362935046 362935152 7.950000e-31 145.0
27 TraesCS4B01G155500 chr2A 88.554 166 19 0 603 768 119328394 119328229 4.650000e-48 202.0
28 TraesCS4B01G155500 chr2A 82.270 141 24 1 1215 1354 65182726 65182866 1.340000e-23 121.0
29 TraesCS4B01G155500 chr2A 93.617 47 3 0 560 606 234119119 234119073 1.370000e-08 71.3
30 TraesCS4B01G155500 chr1D 76.623 308 62 10 568 872 220076820 220077120 7.890000e-36 161.0
31 TraesCS4B01G155500 chr1D 90.698 43 3 1 551 592 462261049 462261091 3.830000e-04 56.5
32 TraesCS4B01G155500 chr5A 76.341 317 62 13 562 872 582916656 582916347 1.020000e-34 158.0
33 TraesCS4B01G155500 chr3D 91.892 111 9 0 216 326 279199102 279198992 3.670000e-34 156.0
34 TraesCS4B01G155500 chr3D 91.228 114 9 1 210 322 497083833 497083720 1.320000e-33 154.0
35 TraesCS4B01G155500 chr3D 90.909 44 4 0 552 595 130498062 130498019 2.960000e-05 60.2
36 TraesCS4B01G155500 chr1A 91.304 115 9 1 209 322 528253055 528252941 3.670000e-34 156.0
37 TraesCS4B01G155500 chr7D 91.892 111 7 2 762 872 499909183 499909291 1.320000e-33 154.0
38 TraesCS4B01G155500 chr5D 90.826 109 8 2 764 872 53583127 53583233 7.950000e-31 145.0
39 TraesCS4B01G155500 chr5D 86.567 134 15 3 191 323 476724128 476724259 7.950000e-31 145.0
40 TraesCS4B01G155500 chr6A 92.593 54 3 1 553 606 491022598 491022546 2.940000e-10 76.8
41 TraesCS4B01G155500 chr3A 97.059 34 1 0 559 592 110327323 110327356 1.060000e-04 58.4
42 TraesCS4B01G155500 chr2D 90.909 44 3 1 563 605 79335841 79335884 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G155500 chr4B 278410514 278413266 2752 False 5084.0 5084 100.000000 1 2753 1 chr4B.!!$F1 2752
1 TraesCS4B01G155500 chr4D 293380185 293382319 2134 False 895.6 2388 91.334333 317 2737 3 chr4D.!!$F1 2420
2 TraesCS4B01G155500 chr4A 231018305 231021401 3096 False 738.0 1277 88.111000 395 2736 3 chr4A.!!$F3 2341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 1516 0.034896 CCCTTGTGTACTTGCTCCGT 59.965 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 3010 0.250124 CGATGGGGCGCCAAATACTA 60.25 55.0 30.85 8.68 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.854522 CTGGGCCGGAAAGTACTTG 58.145 57.895 6.48 0.00 0.00 3.16
19 20 0.323629 CTGGGCCGGAAAGTACTTGA 59.676 55.000 6.48 0.00 0.00 3.02
20 21 0.035739 TGGGCCGGAAAGTACTTGAC 59.964 55.000 9.34 6.70 0.00 3.18
21 22 1.017701 GGGCCGGAAAGTACTTGACG 61.018 60.000 19.58 19.58 0.00 4.35
22 23 1.017701 GGCCGGAAAGTACTTGACGG 61.018 60.000 31.44 31.44 42.10 4.79
23 24 1.017701 GCCGGAAAGTACTTGACGGG 61.018 60.000 33.85 28.42 40.62 5.28
24 25 1.017701 CCGGAAAGTACTTGACGGGC 61.018 60.000 29.59 10.27 38.31 6.13
25 26 1.349259 CGGAAAGTACTTGACGGGCG 61.349 60.000 19.04 8.96 0.00 6.13
26 27 1.632948 GGAAAGTACTTGACGGGCGC 61.633 60.000 9.34 0.00 0.00 6.53
27 28 0.947180 GAAAGTACTTGACGGGCGCA 60.947 55.000 10.83 0.00 0.00 6.09
28 29 0.949105 AAAGTACTTGACGGGCGCAG 60.949 55.000 10.83 4.90 0.00 5.18
29 30 2.781595 AAGTACTTGACGGGCGCAGG 62.782 60.000 10.83 1.73 0.00 4.85
30 31 3.307906 TACTTGACGGGCGCAGGT 61.308 61.111 10.83 5.89 0.00 4.00
31 32 3.583276 TACTTGACGGGCGCAGGTG 62.583 63.158 10.83 0.00 0.00 4.00
32 33 4.988598 CTTGACGGGCGCAGGTGT 62.989 66.667 10.83 0.30 0.00 4.16
33 34 3.583276 CTTGACGGGCGCAGGTGTA 62.583 63.158 10.83 0.00 0.00 2.90
34 35 3.166490 TTGACGGGCGCAGGTGTAA 62.166 57.895 10.83 1.15 0.00 2.41
35 36 2.125269 GACGGGCGCAGGTGTAAT 60.125 61.111 10.83 0.00 0.00 1.89
36 37 2.435938 ACGGGCGCAGGTGTAATG 60.436 61.111 10.83 0.00 0.00 1.90
37 38 2.125310 CGGGCGCAGGTGTAATGA 60.125 61.111 10.83 0.00 0.00 2.57
38 39 1.743623 CGGGCGCAGGTGTAATGAA 60.744 57.895 10.83 0.00 0.00 2.57
39 40 1.095228 CGGGCGCAGGTGTAATGAAT 61.095 55.000 10.83 0.00 0.00 2.57
40 41 0.381801 GGGCGCAGGTGTAATGAATG 59.618 55.000 10.83 0.00 0.00 2.67
41 42 0.248621 GGCGCAGGTGTAATGAATGC 60.249 55.000 10.83 0.00 0.00 3.56
44 45 2.458592 GCAGGTGTAATGAATGCGAC 57.541 50.000 0.00 0.00 0.00 5.19
45 46 1.267532 GCAGGTGTAATGAATGCGACG 60.268 52.381 0.00 0.00 0.00 5.12
46 47 1.006832 AGGTGTAATGAATGCGACGC 58.993 50.000 14.19 14.19 0.00 5.19
47 48 0.724549 GGTGTAATGAATGCGACGCA 59.275 50.000 26.68 26.68 44.86 5.24
48 49 1.267532 GGTGTAATGAATGCGACGCAG 60.268 52.381 28.10 0.00 43.65 5.18
49 50 1.658596 GTGTAATGAATGCGACGCAGA 59.341 47.619 28.10 14.52 43.65 4.26
50 51 1.926510 TGTAATGAATGCGACGCAGAG 59.073 47.619 28.10 0.00 43.65 3.35
51 52 1.258982 GTAATGAATGCGACGCAGAGG 59.741 52.381 28.10 0.00 43.65 3.69
52 53 0.391661 AATGAATGCGACGCAGAGGT 60.392 50.000 28.10 12.87 43.65 3.85
53 54 1.086067 ATGAATGCGACGCAGAGGTG 61.086 55.000 28.10 0.00 43.65 4.00
54 55 2.434884 AATGCGACGCAGAGGTGG 60.435 61.111 28.10 0.00 43.65 4.61
55 56 3.958147 AATGCGACGCAGAGGTGGG 62.958 63.158 28.10 0.00 43.65 4.61
59 60 4.101448 GACGCAGAGGTGGGCCAT 62.101 66.667 10.70 0.00 40.30 4.40
60 61 4.101448 ACGCAGAGGTGGGCCATC 62.101 66.667 10.70 10.00 40.30 3.51
63 64 3.790437 CAGAGGTGGGCCATCGCT 61.790 66.667 18.08 18.08 37.19 4.93
64 65 3.474570 AGAGGTGGGCCATCGCTC 61.475 66.667 18.08 7.63 37.19 5.03
65 66 3.785859 GAGGTGGGCCATCGCTCA 61.786 66.667 13.80 0.00 45.70 4.26
69 70 3.076999 TGGGCCATCGCTCAAAGA 58.923 55.556 0.00 0.00 44.60 2.52
70 71 1.378378 TGGGCCATCGCTCAAAGAA 59.622 52.632 0.00 0.00 44.60 2.52
71 72 0.251121 TGGGCCATCGCTCAAAGAAA 60.251 50.000 0.00 0.00 44.60 2.52
72 73 1.106285 GGGCCATCGCTCAAAGAAAT 58.894 50.000 4.39 0.00 34.62 2.17
73 74 2.297701 GGGCCATCGCTCAAAGAAATA 58.702 47.619 4.39 0.00 34.62 1.40
74 75 2.687935 GGGCCATCGCTCAAAGAAATAA 59.312 45.455 4.39 0.00 34.62 1.40
75 76 3.319122 GGGCCATCGCTCAAAGAAATAAT 59.681 43.478 4.39 0.00 34.62 1.28
76 77 4.540824 GGCCATCGCTCAAAGAAATAATC 58.459 43.478 0.00 0.00 34.44 1.75
77 78 4.036734 GGCCATCGCTCAAAGAAATAATCA 59.963 41.667 0.00 0.00 34.44 2.57
78 79 5.278660 GGCCATCGCTCAAAGAAATAATCAT 60.279 40.000 0.00 0.00 34.44 2.45
79 80 5.628193 GCCATCGCTCAAAGAAATAATCATG 59.372 40.000 0.00 0.00 0.00 3.07
80 81 6.732154 CCATCGCTCAAAGAAATAATCATGT 58.268 36.000 0.00 0.00 0.00 3.21
81 82 7.520453 GCCATCGCTCAAAGAAATAATCATGTA 60.520 37.037 0.00 0.00 0.00 2.29
82 83 8.013947 CCATCGCTCAAAGAAATAATCATGTAG 58.986 37.037 0.00 0.00 0.00 2.74
83 84 7.482654 TCGCTCAAAGAAATAATCATGTAGG 57.517 36.000 0.00 0.00 0.00 3.18
84 85 7.272244 TCGCTCAAAGAAATAATCATGTAGGA 58.728 34.615 0.00 0.00 0.00 2.94
85 86 7.224753 TCGCTCAAAGAAATAATCATGTAGGAC 59.775 37.037 0.00 0.00 0.00 3.85
86 87 7.225538 CGCTCAAAGAAATAATCATGTAGGACT 59.774 37.037 0.00 0.00 0.00 3.85
87 88 8.555361 GCTCAAAGAAATAATCATGTAGGACTC 58.445 37.037 0.00 0.00 0.00 3.36
88 89 8.964476 TCAAAGAAATAATCATGTAGGACTCC 57.036 34.615 0.00 0.00 0.00 3.85
89 90 7.993183 TCAAAGAAATAATCATGTAGGACTCCC 59.007 37.037 0.00 0.00 0.00 4.30
90 91 7.698163 AAGAAATAATCATGTAGGACTCCCT 57.302 36.000 0.00 0.00 46.62 4.20
91 92 8.798975 AAGAAATAATCATGTAGGACTCCCTA 57.201 34.615 0.00 0.00 43.97 3.53
92 93 8.980832 AGAAATAATCATGTAGGACTCCCTAT 57.019 34.615 0.00 0.00 46.10 2.57
95 96 7.883391 ATAATCATGTAGGACTCCCTATACG 57.117 40.000 0.00 0.00 46.10 3.06
96 97 4.987963 TCATGTAGGACTCCCTATACGA 57.012 45.455 0.00 0.00 46.10 3.43
97 98 4.907809 TCATGTAGGACTCCCTATACGAG 58.092 47.826 0.00 0.00 46.10 4.18
98 99 3.137446 TGTAGGACTCCCTATACGAGC 57.863 52.381 0.00 0.00 46.10 5.03
99 100 2.709934 TGTAGGACTCCCTATACGAGCT 59.290 50.000 0.00 0.00 46.10 4.09
100 101 3.906218 TGTAGGACTCCCTATACGAGCTA 59.094 47.826 0.00 0.00 46.10 3.32
101 102 4.349048 TGTAGGACTCCCTATACGAGCTAA 59.651 45.833 0.00 0.00 46.10 3.09
102 103 4.450305 AGGACTCCCTATACGAGCTAAA 57.550 45.455 0.00 0.00 42.15 1.85
103 104 4.801164 AGGACTCCCTATACGAGCTAAAA 58.199 43.478 0.00 0.00 42.15 1.52
104 105 5.395611 AGGACTCCCTATACGAGCTAAAAT 58.604 41.667 0.00 0.00 42.15 1.82
105 106 6.550163 AGGACTCCCTATACGAGCTAAAATA 58.450 40.000 0.00 0.00 42.15 1.40
106 107 7.183460 AGGACTCCCTATACGAGCTAAAATAT 58.817 38.462 0.00 0.00 42.15 1.28
107 108 8.334734 AGGACTCCCTATACGAGCTAAAATATA 58.665 37.037 0.00 0.00 42.15 0.86
108 109 8.964772 GGACTCCCTATACGAGCTAAAATATAA 58.035 37.037 0.00 0.00 0.00 0.98
110 111 8.468399 ACTCCCTATACGAGCTAAAATATAAGC 58.532 37.037 0.00 0.00 39.08 3.09
111 112 7.478322 TCCCTATACGAGCTAAAATATAAGCG 58.522 38.462 0.00 0.00 43.63 4.68
112 113 6.696148 CCCTATACGAGCTAAAATATAAGCGG 59.304 42.308 0.00 0.00 43.63 5.52
113 114 6.696148 CCTATACGAGCTAAAATATAAGCGGG 59.304 42.308 0.00 0.00 43.63 6.13
114 115 4.595762 ACGAGCTAAAATATAAGCGGGA 57.404 40.909 0.00 0.00 43.63 5.14
115 116 4.557205 ACGAGCTAAAATATAAGCGGGAG 58.443 43.478 0.00 0.00 43.63 4.30
116 117 4.038883 ACGAGCTAAAATATAAGCGGGAGT 59.961 41.667 0.00 0.00 43.63 3.85
117 118 4.386049 CGAGCTAAAATATAAGCGGGAGTG 59.614 45.833 0.00 0.00 43.63 3.51
118 119 5.291905 AGCTAAAATATAAGCGGGAGTGT 57.708 39.130 0.00 0.00 43.63 3.55
119 120 5.057149 AGCTAAAATATAAGCGGGAGTGTG 58.943 41.667 0.00 0.00 43.63 3.82
120 121 5.054477 GCTAAAATATAAGCGGGAGTGTGA 58.946 41.667 0.00 0.00 0.00 3.58
121 122 5.526111 GCTAAAATATAAGCGGGAGTGTGAA 59.474 40.000 0.00 0.00 0.00 3.18
122 123 6.204882 GCTAAAATATAAGCGGGAGTGTGAAT 59.795 38.462 0.00 0.00 0.00 2.57
123 124 6.619801 AAAATATAAGCGGGAGTGTGAATC 57.380 37.500 0.00 0.00 0.00 2.52
124 125 5.552870 AATATAAGCGGGAGTGTGAATCT 57.447 39.130 0.00 0.00 0.00 2.40
125 126 2.672961 TAAGCGGGAGTGTGAATCTG 57.327 50.000 0.00 0.00 0.00 2.90
126 127 0.036010 AAGCGGGAGTGTGAATCTGG 60.036 55.000 0.00 0.00 0.00 3.86
127 128 0.904865 AGCGGGAGTGTGAATCTGGA 60.905 55.000 0.00 0.00 0.00 3.86
128 129 0.036388 GCGGGAGTGTGAATCTGGAA 60.036 55.000 0.00 0.00 0.00 3.53
129 130 2.009042 GCGGGAGTGTGAATCTGGAAG 61.009 57.143 0.00 0.00 0.00 3.46
140 141 3.914984 TCTGGAAGAAAGCAGACGG 57.085 52.632 0.00 0.00 42.31 4.79
141 142 1.338107 TCTGGAAGAAAGCAGACGGA 58.662 50.000 0.00 0.00 42.31 4.69
142 143 1.902508 TCTGGAAGAAAGCAGACGGAT 59.097 47.619 0.00 0.00 42.31 4.18
143 144 2.005451 CTGGAAGAAAGCAGACGGATG 58.995 52.381 0.00 0.00 34.07 3.51
144 145 1.347707 TGGAAGAAAGCAGACGGATGT 59.652 47.619 0.00 0.00 0.00 3.06
145 146 1.734465 GGAAGAAAGCAGACGGATGTG 59.266 52.381 0.00 0.00 0.00 3.21
146 147 2.612972 GGAAGAAAGCAGACGGATGTGA 60.613 50.000 0.00 0.00 0.00 3.58
147 148 3.265791 GAAGAAAGCAGACGGATGTGAT 58.734 45.455 0.00 0.00 0.00 3.06
148 149 4.433615 GAAGAAAGCAGACGGATGTGATA 58.566 43.478 0.00 0.00 0.00 2.15
149 150 4.471904 AGAAAGCAGACGGATGTGATAA 57.528 40.909 0.00 0.00 0.00 1.75
150 151 4.832248 AGAAAGCAGACGGATGTGATAAA 58.168 39.130 0.00 0.00 0.00 1.40
151 152 4.872691 AGAAAGCAGACGGATGTGATAAAG 59.127 41.667 0.00 0.00 0.00 1.85
152 153 3.895232 AGCAGACGGATGTGATAAAGT 57.105 42.857 0.00 0.00 0.00 2.66
153 154 3.525537 AGCAGACGGATGTGATAAAGTG 58.474 45.455 0.00 0.00 0.00 3.16
154 155 3.055819 AGCAGACGGATGTGATAAAGTGT 60.056 43.478 0.00 0.00 0.00 3.55
155 156 3.062639 GCAGACGGATGTGATAAAGTGTG 59.937 47.826 0.00 0.00 0.00 3.82
156 157 3.062639 CAGACGGATGTGATAAAGTGTGC 59.937 47.826 0.00 0.00 0.00 4.57
157 158 3.000041 GACGGATGTGATAAAGTGTGCA 59.000 45.455 0.00 0.00 0.00 4.57
158 159 3.002791 ACGGATGTGATAAAGTGTGCAG 58.997 45.455 0.00 0.00 0.00 4.41
159 160 2.352651 CGGATGTGATAAAGTGTGCAGG 59.647 50.000 0.00 0.00 0.00 4.85
160 161 3.347216 GGATGTGATAAAGTGTGCAGGT 58.653 45.455 0.00 0.00 0.00 4.00
161 162 3.127548 GGATGTGATAAAGTGTGCAGGTG 59.872 47.826 0.00 0.00 0.00 4.00
162 163 3.207265 TGTGATAAAGTGTGCAGGTGT 57.793 42.857 0.00 0.00 0.00 4.16
163 164 2.877786 TGTGATAAAGTGTGCAGGTGTG 59.122 45.455 0.00 0.00 0.00 3.82
173 174 4.007644 CAGGTGTGCTCGGGCTCA 62.008 66.667 9.62 8.85 39.25 4.26
174 175 3.005539 AGGTGTGCTCGGGCTCAT 61.006 61.111 16.04 0.00 42.61 2.90
175 176 1.685765 AGGTGTGCTCGGGCTCATA 60.686 57.895 16.04 0.00 42.61 2.15
176 177 1.220749 GGTGTGCTCGGGCTCATAA 59.779 57.895 16.04 0.00 42.61 1.90
177 178 0.811616 GGTGTGCTCGGGCTCATAAG 60.812 60.000 16.04 0.00 42.61 1.73
178 179 0.175760 GTGTGCTCGGGCTCATAAGA 59.824 55.000 16.04 0.00 42.61 2.10
179 180 0.461548 TGTGCTCGGGCTCATAAGAG 59.538 55.000 9.62 0.00 44.96 2.85
190 191 3.717400 CTCATAAGAGCACTTCCGCTA 57.283 47.619 0.00 0.00 44.01 4.26
191 192 3.376540 CTCATAAGAGCACTTCCGCTAC 58.623 50.000 0.00 0.00 44.01 3.58
192 193 3.024547 TCATAAGAGCACTTCCGCTACT 58.975 45.455 0.00 0.00 44.01 2.57
193 194 2.941453 TAAGAGCACTTCCGCTACTG 57.059 50.000 0.00 0.00 44.01 2.74
194 195 0.969894 AAGAGCACTTCCGCTACTGT 59.030 50.000 0.00 0.00 44.01 3.55
195 196 1.835494 AGAGCACTTCCGCTACTGTA 58.165 50.000 0.00 0.00 44.01 2.74
196 197 2.168496 AGAGCACTTCCGCTACTGTAA 58.832 47.619 0.00 0.00 44.01 2.41
197 198 2.761208 AGAGCACTTCCGCTACTGTAAT 59.239 45.455 0.00 0.00 44.01 1.89
198 199 3.117046 GAGCACTTCCGCTACTGTAATC 58.883 50.000 0.00 0.00 44.01 1.75
199 200 2.496070 AGCACTTCCGCTACTGTAATCA 59.504 45.455 0.00 0.00 41.55 2.57
200 201 3.056107 AGCACTTCCGCTACTGTAATCAA 60.056 43.478 0.00 0.00 41.55 2.57
201 202 3.062234 GCACTTCCGCTACTGTAATCAAC 59.938 47.826 0.00 0.00 0.00 3.18
202 203 4.495422 CACTTCCGCTACTGTAATCAACT 58.505 43.478 0.00 0.00 0.00 3.16
203 204 5.647589 CACTTCCGCTACTGTAATCAACTA 58.352 41.667 0.00 0.00 0.00 2.24
204 205 6.097356 CACTTCCGCTACTGTAATCAACTAA 58.903 40.000 0.00 0.00 0.00 2.24
205 206 6.757010 CACTTCCGCTACTGTAATCAACTAAT 59.243 38.462 0.00 0.00 0.00 1.73
206 207 6.979238 ACTTCCGCTACTGTAATCAACTAATC 59.021 38.462 0.00 0.00 0.00 1.75
207 208 6.459670 TCCGCTACTGTAATCAACTAATCA 57.540 37.500 0.00 0.00 0.00 2.57
208 209 6.504398 TCCGCTACTGTAATCAACTAATCAG 58.496 40.000 0.00 0.00 0.00 2.90
209 210 6.096423 TCCGCTACTGTAATCAACTAATCAGT 59.904 38.462 0.00 0.00 39.11 3.41
210 211 7.283807 TCCGCTACTGTAATCAACTAATCAGTA 59.716 37.037 0.00 0.00 37.35 2.74
221 222 7.598759 TCAACTAATCAGTAGTATTCCCTCC 57.401 40.000 0.00 0.00 42.55 4.30
222 223 6.264744 TCAACTAATCAGTAGTATTCCCTCCG 59.735 42.308 0.00 0.00 42.55 4.63
223 224 5.703310 ACTAATCAGTAGTATTCCCTCCGT 58.297 41.667 0.00 0.00 41.51 4.69
224 225 6.134754 ACTAATCAGTAGTATTCCCTCCGTT 58.865 40.000 0.00 0.00 41.51 4.44
225 226 5.952347 AATCAGTAGTATTCCCTCCGTTT 57.048 39.130 0.00 0.00 0.00 3.60
226 227 4.730949 TCAGTAGTATTCCCTCCGTTTG 57.269 45.455 0.00 0.00 0.00 2.93
227 228 3.449737 TCAGTAGTATTCCCTCCGTTTGG 59.550 47.826 0.00 0.00 0.00 3.28
228 229 3.449737 CAGTAGTATTCCCTCCGTTTGGA 59.550 47.826 0.00 0.00 43.88 3.53
229 230 4.081309 CAGTAGTATTCCCTCCGTTTGGAA 60.081 45.833 0.00 0.00 45.87 3.53
231 232 4.586306 AGTATTCCCTCCGTTTGGAATT 57.414 40.909 12.89 0.00 46.68 2.17
232 233 5.703730 AGTATTCCCTCCGTTTGGAATTA 57.296 39.130 12.89 0.93 46.68 1.40
233 234 6.262056 AGTATTCCCTCCGTTTGGAATTAT 57.738 37.500 12.89 2.86 46.68 1.28
234 235 6.669631 AGTATTCCCTCCGTTTGGAATTATT 58.330 36.000 12.89 0.78 46.68 1.40
235 236 7.123383 AGTATTCCCTCCGTTTGGAATTATTT 58.877 34.615 12.89 0.00 46.68 1.40
236 237 5.652994 TTCCCTCCGTTTGGAATTATTTG 57.347 39.130 0.00 0.00 45.87 2.32
237 238 4.668636 TCCCTCCGTTTGGAATTATTTGT 58.331 39.130 0.00 0.00 45.87 2.83
238 239 4.703093 TCCCTCCGTTTGGAATTATTTGTC 59.297 41.667 0.00 0.00 45.87 3.18
239 240 4.461081 CCCTCCGTTTGGAATTATTTGTCA 59.539 41.667 0.00 0.00 45.87 3.58
240 241 5.399013 CCTCCGTTTGGAATTATTTGTCAC 58.601 41.667 0.00 0.00 45.87 3.67
241 242 5.048364 CCTCCGTTTGGAATTATTTGTCACA 60.048 40.000 0.00 0.00 45.87 3.58
242 243 6.392625 TCCGTTTGGAATTATTTGTCACAA 57.607 33.333 0.00 0.00 42.85 3.33
243 244 6.987386 TCCGTTTGGAATTATTTGTCACAAT 58.013 32.000 0.00 0.00 42.85 2.71
244 245 6.865726 TCCGTTTGGAATTATTTGTCACAATG 59.134 34.615 0.00 0.00 42.85 2.82
245 246 6.865726 CCGTTTGGAATTATTTGTCACAATGA 59.134 34.615 0.00 0.00 37.49 2.57
246 247 7.545265 CCGTTTGGAATTATTTGTCACAATGAT 59.455 33.333 0.00 0.00 37.49 2.45
247 248 8.374728 CGTTTGGAATTATTTGTCACAATGATG 58.625 33.333 0.00 0.00 0.00 3.07
248 249 9.421806 GTTTGGAATTATTTGTCACAATGATGA 57.578 29.630 0.00 0.00 0.00 2.92
249 250 9.993454 TTTGGAATTATTTGTCACAATGATGAA 57.007 25.926 0.00 0.00 0.00 2.57
251 252 9.589111 TGGAATTATTTGTCACAATGATGAATG 57.411 29.630 0.00 0.00 0.00 2.67
252 253 9.590451 GGAATTATTTGTCACAATGATGAATGT 57.410 29.630 0.00 0.00 0.00 2.71
259 260 9.447157 TTTGTCACAATGATGAATGTATCTACA 57.553 29.630 0.00 0.00 40.98 2.74
260 261 9.447157 TTGTCACAATGATGAATGTATCTACAA 57.553 29.630 0.00 0.00 39.99 2.41
261 262 8.882736 TGTCACAATGATGAATGTATCTACAAC 58.117 33.333 0.00 0.00 39.99 3.32
262 263 9.102757 GTCACAATGATGAATGTATCTACAACT 57.897 33.333 0.00 0.00 39.99 3.16
310 311 6.897259 TCTTAAACGAGTAATTCCGAATGG 57.103 37.500 0.00 0.00 0.00 3.16
311 312 6.632909 TCTTAAACGAGTAATTCCGAATGGA 58.367 36.000 0.00 0.00 44.61 3.41
347 348 3.522553 GCAGTAAGCACTAGTAGTTGGG 58.477 50.000 0.00 0.00 44.79 4.12
349 350 4.141914 GCAGTAAGCACTAGTAGTTGGGAT 60.142 45.833 0.00 0.00 44.79 3.85
350 351 5.593010 CAGTAAGCACTAGTAGTTGGGATC 58.407 45.833 0.00 0.00 32.21 3.36
352 353 4.473477 AAGCACTAGTAGTTGGGATCAC 57.527 45.455 0.00 0.00 0.00 3.06
353 354 3.441101 AGCACTAGTAGTTGGGATCACA 58.559 45.455 0.00 0.00 0.00 3.58
354 355 3.449018 AGCACTAGTAGTTGGGATCACAG 59.551 47.826 0.00 0.00 0.00 3.66
368 369 1.497991 TCACAGAAAAAGTCTCCGCG 58.502 50.000 0.00 0.00 32.70 6.46
393 394 3.204606 AGCTATAGATATACAGGCCGGGA 59.795 47.826 8.08 0.00 0.00 5.14
405 406 2.567615 CAGGCCGGGATAGCTAGTAATT 59.432 50.000 2.18 0.00 0.00 1.40
473 474 4.208632 GGCTGACGACCTCAATGG 57.791 61.111 0.00 0.00 42.93 3.16
488 511 6.684538 ACCTCAATGGAGTACTACCTATCTT 58.315 40.000 1.66 0.00 39.64 2.40
543 1496 0.461961 CCCATCTCGACCTTCACCTC 59.538 60.000 0.00 0.00 0.00 3.85
554 1507 1.003233 CCTTCACCTCCCCTTGTGTAC 59.997 57.143 0.00 0.00 34.14 2.90
559 1512 0.693049 CCTCCCCTTGTGTACTTGCT 59.307 55.000 0.00 0.00 0.00 3.91
560 1513 1.339151 CCTCCCCTTGTGTACTTGCTC 60.339 57.143 0.00 0.00 0.00 4.26
561 1514 0.690762 TCCCCTTGTGTACTTGCTCC 59.309 55.000 0.00 0.00 0.00 4.70
562 1515 0.673644 CCCCTTGTGTACTTGCTCCG 60.674 60.000 0.00 0.00 0.00 4.63
563 1516 0.034896 CCCTTGTGTACTTGCTCCGT 59.965 55.000 0.00 0.00 0.00 4.69
564 1517 1.542547 CCCTTGTGTACTTGCTCCGTT 60.543 52.381 0.00 0.00 0.00 4.44
565 1518 2.218603 CCTTGTGTACTTGCTCCGTTT 58.781 47.619 0.00 0.00 0.00 3.60
566 1519 2.616842 CCTTGTGTACTTGCTCCGTTTT 59.383 45.455 0.00 0.00 0.00 2.43
567 1520 3.066203 CCTTGTGTACTTGCTCCGTTTTT 59.934 43.478 0.00 0.00 0.00 1.94
568 1521 4.273969 CCTTGTGTACTTGCTCCGTTTTTA 59.726 41.667 0.00 0.00 0.00 1.52
569 1522 5.220892 CCTTGTGTACTTGCTCCGTTTTTAA 60.221 40.000 0.00 0.00 0.00 1.52
570 1523 5.814764 TGTGTACTTGCTCCGTTTTTAAA 57.185 34.783 0.00 0.00 0.00 1.52
571 1524 6.380095 TGTGTACTTGCTCCGTTTTTAAAT 57.620 33.333 0.00 0.00 0.00 1.40
572 1525 7.493743 TGTGTACTTGCTCCGTTTTTAAATA 57.506 32.000 0.00 0.00 0.00 1.40
573 1526 8.101654 TGTGTACTTGCTCCGTTTTTAAATAT 57.898 30.769 0.00 0.00 0.00 1.28
574 1527 9.217278 TGTGTACTTGCTCCGTTTTTAAATATA 57.783 29.630 0.00 0.00 0.00 0.86
579 1532 9.227777 ACTTGCTCCGTTTTTAAATATAAGTCT 57.772 29.630 0.00 0.00 0.00 3.24
606 1559 9.555727 TTTTTAGAGATTGCACTACAAACTACT 57.444 29.630 0.00 0.00 41.09 2.57
607 1560 8.758633 TTTAGAGATTGCACTACAAACTACTC 57.241 34.615 0.00 0.00 41.09 2.59
608 1561 5.725362 AGAGATTGCACTACAAACTACTCC 58.275 41.667 0.00 0.00 41.09 3.85
609 1562 4.833390 AGATTGCACTACAAACTACTCCC 58.167 43.478 0.00 0.00 42.86 4.30
610 1563 4.532521 AGATTGCACTACAAACTACTCCCT 59.467 41.667 0.00 0.00 42.86 4.20
611 1564 3.955650 TGCACTACAAACTACTCCCTC 57.044 47.619 0.00 0.00 0.00 4.30
612 1565 2.565834 TGCACTACAAACTACTCCCTCC 59.434 50.000 0.00 0.00 0.00 4.30
613 1566 2.416972 GCACTACAAACTACTCCCTCCG 60.417 54.545 0.00 0.00 0.00 4.63
614 1567 2.824341 CACTACAAACTACTCCCTCCGT 59.176 50.000 0.00 0.00 0.00 4.69
615 1568 3.257624 CACTACAAACTACTCCCTCCGTT 59.742 47.826 0.00 0.00 0.00 4.44
616 1569 3.899980 ACTACAAACTACTCCCTCCGTTT 59.100 43.478 0.00 0.00 0.00 3.60
617 1570 3.851458 ACAAACTACTCCCTCCGTTTT 57.149 42.857 0.00 0.00 0.00 2.43
618 1571 4.160642 ACAAACTACTCCCTCCGTTTTT 57.839 40.909 0.00 0.00 0.00 1.94
619 1572 5.294734 ACAAACTACTCCCTCCGTTTTTA 57.705 39.130 0.00 0.00 0.00 1.52
620 1573 5.683681 ACAAACTACTCCCTCCGTTTTTAA 58.316 37.500 0.00 0.00 0.00 1.52
621 1574 6.121590 ACAAACTACTCCCTCCGTTTTTAAA 58.878 36.000 0.00 0.00 0.00 1.52
622 1575 6.774170 ACAAACTACTCCCTCCGTTTTTAAAT 59.226 34.615 0.00 0.00 0.00 1.40
623 1576 7.938490 ACAAACTACTCCCTCCGTTTTTAAATA 59.062 33.333 0.00 0.00 0.00 1.40
624 1577 8.953313 CAAACTACTCCCTCCGTTTTTAAATAT 58.047 33.333 0.00 0.00 0.00 1.28
627 1580 9.828039 ACTACTCCCTCCGTTTTTAAATATAAG 57.172 33.333 0.00 0.00 0.00 1.73
628 1581 9.828039 CTACTCCCTCCGTTTTTAAATATAAGT 57.172 33.333 0.00 0.00 0.00 2.24
629 1582 8.728337 ACTCCCTCCGTTTTTAAATATAAGTC 57.272 34.615 0.00 0.00 0.00 3.01
630 1583 8.546322 ACTCCCTCCGTTTTTAAATATAAGTCT 58.454 33.333 0.00 0.00 0.00 3.24
631 1584 9.392259 CTCCCTCCGTTTTTAAATATAAGTCTT 57.608 33.333 0.00 0.00 0.00 3.01
632 1585 9.743581 TCCCTCCGTTTTTAAATATAAGTCTTT 57.256 29.630 0.00 0.00 0.00 2.52
633 1586 9.783256 CCCTCCGTTTTTAAATATAAGTCTTTG 57.217 33.333 0.00 0.00 0.00 2.77
652 1605 9.606631 AGTCTTTGTAGAGATTCCATTATGAAC 57.393 33.333 0.00 0.00 0.00 3.18
653 1606 8.831550 GTCTTTGTAGAGATTCCATTATGAACC 58.168 37.037 0.00 0.00 0.00 3.62
654 1607 8.548025 TCTTTGTAGAGATTCCATTATGAACCA 58.452 33.333 0.00 0.00 0.00 3.67
655 1608 9.347240 CTTTGTAGAGATTCCATTATGAACCAT 57.653 33.333 0.00 0.00 0.00 3.55
661 1614 8.260818 AGAGATTCCATTATGAACCATATACGG 58.739 37.037 0.00 0.00 0.00 4.02
662 1615 8.146053 AGATTCCATTATGAACCATATACGGA 57.854 34.615 0.00 0.00 0.00 4.69
663 1616 8.772250 AGATTCCATTATGAACCATATACGGAT 58.228 33.333 0.00 0.00 0.00 4.18
664 1617 8.737168 ATTCCATTATGAACCATATACGGATG 57.263 34.615 0.00 0.00 0.00 3.51
665 1618 7.252612 TCCATTATGAACCATATACGGATGT 57.747 36.000 0.00 0.00 0.00 3.06
666 1619 8.368962 TCCATTATGAACCATATACGGATGTA 57.631 34.615 0.00 0.00 34.45 2.29
667 1620 8.988060 TCCATTATGAACCATATACGGATGTAT 58.012 33.333 0.00 0.00 43.62 2.29
707 1660 8.922058 ATGTGTAGATTCATTCATTTTGCTTC 57.078 30.769 0.00 0.00 0.00 3.86
708 1661 7.884257 TGTGTAGATTCATTCATTTTGCTTCA 58.116 30.769 0.00 0.00 0.00 3.02
709 1662 8.525316 TGTGTAGATTCATTCATTTTGCTTCAT 58.475 29.630 0.00 0.00 0.00 2.57
714 1667 9.529325 AGATTCATTCATTTTGCTTCATATGTG 57.471 29.630 1.90 0.00 0.00 3.21
715 1668 9.309516 GATTCATTCATTTTGCTTCATATGTGT 57.690 29.630 1.90 0.00 0.00 3.72
716 1669 9.661563 ATTCATTCATTTTGCTTCATATGTGTT 57.338 25.926 1.90 0.00 0.00 3.32
717 1670 9.491675 TTCATTCATTTTGCTTCATATGTGTTT 57.508 25.926 1.90 0.00 0.00 2.83
718 1671 9.142515 TCATTCATTTTGCTTCATATGTGTTTC 57.857 29.630 1.90 0.00 0.00 2.78
719 1672 8.927721 CATTCATTTTGCTTCATATGTGTTTCA 58.072 29.630 1.90 0.00 0.00 2.69
720 1673 9.661563 ATTCATTTTGCTTCATATGTGTTTCAT 57.338 25.926 1.90 0.00 40.25 2.57
722 1675 9.791820 TCATTTTGCTTCATATGTGTTTCATAG 57.208 29.630 1.90 0.00 41.55 2.23
723 1676 9.577110 CATTTTGCTTCATATGTGTTTCATAGT 57.423 29.630 1.90 0.00 41.55 2.12
724 1677 8.969121 TTTTGCTTCATATGTGTTTCATAGTG 57.031 30.769 1.90 0.00 41.55 2.74
725 1678 7.920160 TTGCTTCATATGTGTTTCATAGTGA 57.080 32.000 1.90 0.00 41.55 3.41
726 1679 7.920160 TGCTTCATATGTGTTTCATAGTGAA 57.080 32.000 1.90 0.00 41.55 3.18
727 1680 8.334263 TGCTTCATATGTGTTTCATAGTGAAA 57.666 30.769 1.90 1.24 43.37 2.69
728 1681 8.959548 TGCTTCATATGTGTTTCATAGTGAAAT 58.040 29.630 8.21 0.00 46.55 2.17
729 1682 9.443283 GCTTCATATGTGTTTCATAGTGAAATC 57.557 33.333 8.21 6.17 46.55 2.17
759 1712 9.595823 TCAAAGACTTATATTAAAGAACGGAGG 57.404 33.333 0.00 0.00 0.00 4.30
760 1713 8.827677 CAAAGACTTATATTAAAGAACGGAGGG 58.172 37.037 0.00 0.00 0.00 4.30
761 1714 7.909485 AGACTTATATTAAAGAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
762 1715 7.953752 AGACTTATATTAAAGAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
763 1716 7.564292 AGACTTATATTAAAGAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
764 1717 8.773033 ACTTATATTAAAGAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
765 1718 8.637099 ACTTATATTAAAGAACGGAGGGAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
766 1719 8.537728 TTATATTAAAGAACGGAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
767 1720 5.952347 ATTAAAGAACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
768 1721 8.716674 ATATTAAAGAACGGAGGGAGTACATA 57.283 34.615 0.00 0.00 0.00 2.29
769 1722 4.732672 AAAGAACGGAGGGAGTACATAC 57.267 45.455 0.00 0.00 0.00 2.39
770 1723 2.295885 AGAACGGAGGGAGTACATACG 58.704 52.381 0.00 0.00 0.00 3.06
771 1724 1.336125 GAACGGAGGGAGTACATACGG 59.664 57.143 0.00 0.00 0.00 4.02
772 1725 0.548031 ACGGAGGGAGTACATACGGA 59.452 55.000 0.00 0.00 0.00 4.69
773 1726 1.144503 ACGGAGGGAGTACATACGGAT 59.855 52.381 0.00 0.00 0.00 4.18
774 1727 1.540267 CGGAGGGAGTACATACGGATG 59.460 57.143 5.94 5.94 39.16 3.51
776 1729 3.759581 GGAGGGAGTACATACGGATGTA 58.240 50.000 16.71 16.71 44.77 2.29
818 1771 9.467258 AAGTGTAGATTCATTCATTTTGTTGTG 57.533 29.630 0.00 0.00 0.00 3.33
819 1772 8.632679 AGTGTAGATTCATTCATTTTGTTGTGT 58.367 29.630 0.00 0.00 0.00 3.72
820 1773 9.891828 GTGTAGATTCATTCATTTTGTTGTGTA 57.108 29.630 0.00 0.00 0.00 2.90
827 1780 9.891828 TTCATTCATTTTGTTGTGTATGTAGTC 57.108 29.630 0.00 0.00 0.00 2.59
828 1781 9.283768 TCATTCATTTTGTTGTGTATGTAGTCT 57.716 29.630 0.00 0.00 0.00 3.24
835 1788 8.697846 TTTGTTGTGTATGTAGTCTATAGTGC 57.302 34.615 0.00 0.00 0.00 4.40
836 1789 7.399245 TGTTGTGTATGTAGTCTATAGTGCA 57.601 36.000 0.00 0.00 0.00 4.57
837 1790 7.832769 TGTTGTGTATGTAGTCTATAGTGCAA 58.167 34.615 0.00 0.00 0.00 4.08
838 1791 8.474831 TGTTGTGTATGTAGTCTATAGTGCAAT 58.525 33.333 0.00 0.00 0.00 3.56
839 1792 8.969267 GTTGTGTATGTAGTCTATAGTGCAATC 58.031 37.037 0.00 0.00 0.00 2.67
840 1793 8.465273 TGTGTATGTAGTCTATAGTGCAATCT 57.535 34.615 0.00 0.00 0.00 2.40
841 1794 8.914011 TGTGTATGTAGTCTATAGTGCAATCTT 58.086 33.333 0.00 0.00 0.00 2.40
842 1795 9.751542 GTGTATGTAGTCTATAGTGCAATCTTT 57.248 33.333 0.00 0.00 0.00 2.52
873 1826 9.777008 AGACTTATATATTTAGGAAGGGAGGAG 57.223 37.037 0.00 0.00 0.00 3.69
874 1827 8.919018 ACTTATATATTTAGGAAGGGAGGAGG 57.081 38.462 0.00 0.00 0.00 4.30
875 1828 8.698476 ACTTATATATTTAGGAAGGGAGGAGGA 58.302 37.037 0.00 0.00 0.00 3.71
876 1829 9.562226 CTTATATATTTAGGAAGGGAGGAGGAA 57.438 37.037 0.00 0.00 0.00 3.36
877 1830 9.562226 TTATATATTTAGGAAGGGAGGAGGAAG 57.438 37.037 0.00 0.00 0.00 3.46
878 1831 2.570386 TTAGGAAGGGAGGAGGAAGG 57.430 55.000 0.00 0.00 0.00 3.46
879 1832 0.642710 TAGGAAGGGAGGAGGAAGGG 59.357 60.000 0.00 0.00 0.00 3.95
880 1833 1.162951 AGGAAGGGAGGAGGAAGGGA 61.163 60.000 0.00 0.00 0.00 4.20
881 1834 0.692756 GGAAGGGAGGAGGAAGGGAG 60.693 65.000 0.00 0.00 0.00 4.30
882 1835 0.043485 GAAGGGAGGAGGAAGGGAGT 59.957 60.000 0.00 0.00 0.00 3.85
883 1836 1.291335 GAAGGGAGGAGGAAGGGAGTA 59.709 57.143 0.00 0.00 0.00 2.59
884 1837 0.938192 AGGGAGGAGGAAGGGAGTAG 59.062 60.000 0.00 0.00 0.00 2.57
885 1838 0.637743 GGGAGGAGGAAGGGAGTAGT 59.362 60.000 0.00 0.00 0.00 2.73
886 1839 1.008571 GGGAGGAGGAAGGGAGTAGTT 59.991 57.143 0.00 0.00 0.00 2.24
887 1840 2.112190 GGAGGAGGAAGGGAGTAGTTG 58.888 57.143 0.00 0.00 0.00 3.16
888 1841 1.483004 GAGGAGGAAGGGAGTAGTTGC 59.517 57.143 0.00 0.00 0.00 4.17
889 1842 0.175989 GGAGGAAGGGAGTAGTTGCG 59.824 60.000 0.00 0.00 0.00 4.85
890 1843 0.896226 GAGGAAGGGAGTAGTTGCGT 59.104 55.000 0.00 0.00 0.00 5.24
891 1844 0.608640 AGGAAGGGAGTAGTTGCGTG 59.391 55.000 0.00 0.00 0.00 5.34
892 1845 0.320697 GGAAGGGAGTAGTTGCGTGT 59.679 55.000 0.00 0.00 0.00 4.49
893 1846 1.429463 GAAGGGAGTAGTTGCGTGTG 58.571 55.000 0.00 0.00 0.00 3.82
894 1847 0.602905 AAGGGAGTAGTTGCGTGTGC 60.603 55.000 0.00 0.00 43.20 4.57
971 1944 5.785423 CCCATACCTCCCATAATCAAGTAGA 59.215 44.000 0.00 0.00 0.00 2.59
972 1945 6.272324 CCCATACCTCCCATAATCAAGTAGAA 59.728 42.308 0.00 0.00 0.00 2.10
973 1946 7.390027 CCATACCTCCCATAATCAAGTAGAAG 58.610 42.308 0.00 0.00 0.00 2.85
974 1947 7.016661 CCATACCTCCCATAATCAAGTAGAAGT 59.983 40.741 0.00 0.00 0.00 3.01
975 1948 9.090103 CATACCTCCCATAATCAAGTAGAAGTA 57.910 37.037 0.00 0.00 0.00 2.24
976 1949 7.604657 ACCTCCCATAATCAAGTAGAAGTAG 57.395 40.000 0.00 0.00 0.00 2.57
977 1950 7.133483 ACCTCCCATAATCAAGTAGAAGTAGT 58.867 38.462 0.00 0.00 0.00 2.73
978 1951 8.287350 ACCTCCCATAATCAAGTAGAAGTAGTA 58.713 37.037 0.00 0.00 0.00 1.82
1097 2077 2.202946 GCAGAAGCGGCTACTCCC 60.203 66.667 1.35 0.00 0.00 4.30
1107 2087 1.267121 GGCTACTCCCAGAAGACACA 58.733 55.000 0.00 0.00 0.00 3.72
1111 2091 0.469331 ACTCCCAGAAGACACACCGA 60.469 55.000 0.00 0.00 0.00 4.69
1190 2170 1.765597 AAAGACGAAGGCGAAGGGGT 61.766 55.000 0.00 0.00 41.64 4.95
1191 2171 2.125633 GACGAAGGCGAAGGGGTC 60.126 66.667 0.00 0.00 41.64 4.46
1483 2487 0.465460 GGTGGTGAGCAACAAGTGGA 60.465 55.000 0.00 0.00 0.00 4.02
1770 2777 1.540607 GATCGCATCGTACGTGCAGG 61.541 60.000 28.95 19.47 42.62 4.85
1771 2778 2.954020 ATCGCATCGTACGTGCAGGG 62.954 60.000 28.95 19.42 42.62 4.45
1772 2779 2.183300 GCATCGTACGTGCAGGGA 59.817 61.111 26.74 0.00 42.08 4.20
1773 2780 2.165301 GCATCGTACGTGCAGGGAC 61.165 63.158 26.74 11.87 42.08 4.46
1828 2836 3.900855 GCATCCTGCAGACACCAG 58.099 61.111 17.39 0.00 44.26 4.00
1829 2837 1.002868 GCATCCTGCAGACACCAGT 60.003 57.895 17.39 0.00 44.26 4.00
1830 2838 1.023513 GCATCCTGCAGACACCAGTC 61.024 60.000 17.39 0.00 44.26 3.51
1893 2971 1.364626 GCGTGAGGTCTGCCAATCAG 61.365 60.000 0.00 0.00 44.21 2.90
1902 2980 3.255642 GGTCTGCCAATCAGTTAAGCAAA 59.744 43.478 0.00 0.00 43.32 3.68
1932 3010 7.103641 AGTTTATGTTCAATCATGGAGTACGT 58.896 34.615 0.00 0.00 0.00 3.57
1934 3012 8.540492 GTTTATGTTCAATCATGGAGTACGTAG 58.460 37.037 0.00 0.00 0.00 3.51
1936 3014 6.762702 TGTTCAATCATGGAGTACGTAGTA 57.237 37.500 2.11 0.00 45.11 1.82
2026 3237 2.431683 GCACCCAGCAAGTCTCCA 59.568 61.111 0.00 0.00 44.79 3.86
2027 3238 1.001641 GCACCCAGCAAGTCTCCAT 60.002 57.895 0.00 0.00 44.79 3.41
2028 3239 0.610232 GCACCCAGCAAGTCTCCATT 60.610 55.000 0.00 0.00 44.79 3.16
2032 3243 1.004044 CCCAGCAAGTCTCCATTCAGT 59.996 52.381 0.00 0.00 0.00 3.41
2033 3244 2.553904 CCCAGCAAGTCTCCATTCAGTT 60.554 50.000 0.00 0.00 0.00 3.16
2034 3245 3.307691 CCCAGCAAGTCTCCATTCAGTTA 60.308 47.826 0.00 0.00 0.00 2.24
2035 3246 4.326826 CCAGCAAGTCTCCATTCAGTTAA 58.673 43.478 0.00 0.00 0.00 2.01
2036 3247 4.154918 CCAGCAAGTCTCCATTCAGTTAAC 59.845 45.833 0.00 0.00 0.00 2.01
2094 3311 1.081892 GCTGTCTCATGCACGACAAT 58.918 50.000 14.02 0.00 39.43 2.71
2127 3344 0.035630 CCTGCTCAACTTCTGGAGGG 60.036 60.000 0.00 0.00 0.00 4.30
2138 3355 0.251653 TCTGGAGGGTCAGTAAGCGT 60.252 55.000 0.00 0.00 36.25 5.07
2142 3359 1.675116 GGAGGGTCAGTAAGCGTTTCC 60.675 57.143 0.00 0.00 0.00 3.13
2143 3360 0.323957 AGGGTCAGTAAGCGTTTCCC 59.676 55.000 0.00 0.00 0.00 3.97
2144 3361 0.323957 GGGTCAGTAAGCGTTTCCCT 59.676 55.000 0.00 0.00 0.00 4.20
2145 3362 1.271217 GGGTCAGTAAGCGTTTCCCTT 60.271 52.381 0.00 0.00 0.00 3.95
2276 3496 3.327757 AGGAGGATTGTGCAGTTAGTTCA 59.672 43.478 0.00 0.00 0.00 3.18
2308 3528 4.557205 ACAGGCACAAAAACGTTACAAAA 58.443 34.783 0.00 0.00 0.00 2.44
2323 3543 1.140804 AAAACACGCCCACAAGTGC 59.859 52.632 0.00 0.00 41.72 4.40
2357 3577 3.127099 TCGCCCTCGATCCAACTAT 57.873 52.632 0.00 0.00 40.21 2.12
2393 3613 3.243737 CCATCGACGTCCATAGGAATGAA 60.244 47.826 10.58 0.00 34.84 2.57
2532 3753 2.851263 TGTAAATGTCGGCAAGTCCT 57.149 45.000 0.00 0.00 0.00 3.85
2671 3893 4.007659 AGTTGTCCGGGTGTATGAATTTC 58.992 43.478 0.00 0.00 0.00 2.17
2737 3959 5.355596 CCAAACTTGTTTTTGCACAGGATA 58.644 37.500 0.00 0.00 35.48 2.59
2738 3960 5.234116 CCAAACTTGTTTTTGCACAGGATAC 59.766 40.000 0.00 0.00 35.48 2.24
2739 3961 6.042143 CAAACTTGTTTTTGCACAGGATACT 58.958 36.000 0.00 0.00 37.20 2.12
2740 3962 7.199766 CAAACTTGTTTTTGCACAGGATACTA 58.800 34.615 0.00 0.00 35.45 1.82
2741 3963 7.704472 CAAACTTGTTTTTGCACAGGATACTAA 59.296 33.333 0.00 0.00 35.45 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.323629 TCAAGTACTTTCCGGCCCAG 59.676 55.000 5.07 0.00 0.00 4.45
2 3 1.017701 CGTCAAGTACTTTCCGGCCC 61.018 60.000 5.07 0.00 0.00 5.80
3 4 1.017701 CCGTCAAGTACTTTCCGGCC 61.018 60.000 22.76 0.00 0.00 6.13
5 6 1.017701 GCCCGTCAAGTACTTTCCGG 61.018 60.000 25.52 25.52 34.71 5.14
6 7 1.349259 CGCCCGTCAAGTACTTTCCG 61.349 60.000 5.07 10.71 0.00 4.30
7 8 1.632948 GCGCCCGTCAAGTACTTTCC 61.633 60.000 5.07 0.00 0.00 3.13
8 9 0.947180 TGCGCCCGTCAAGTACTTTC 60.947 55.000 5.07 1.51 0.00 2.62
9 10 0.949105 CTGCGCCCGTCAAGTACTTT 60.949 55.000 5.07 0.00 0.00 2.66
10 11 1.374252 CTGCGCCCGTCAAGTACTT 60.374 57.895 4.18 1.12 0.00 2.24
11 12 2.261671 CTGCGCCCGTCAAGTACT 59.738 61.111 4.18 0.00 0.00 2.73
12 13 2.813908 CCTGCGCCCGTCAAGTAC 60.814 66.667 4.18 0.00 0.00 2.73
13 14 3.307906 ACCTGCGCCCGTCAAGTA 61.308 61.111 4.18 0.00 0.00 2.24
14 15 4.988598 CACCTGCGCCCGTCAAGT 62.989 66.667 4.18 0.00 0.00 3.16
15 16 3.583276 TACACCTGCGCCCGTCAAG 62.583 63.158 4.18 0.00 0.00 3.02
16 17 2.457743 ATTACACCTGCGCCCGTCAA 62.458 55.000 4.18 0.00 0.00 3.18
17 18 2.949909 ATTACACCTGCGCCCGTCA 61.950 57.895 4.18 0.00 0.00 4.35
18 19 2.125269 ATTACACCTGCGCCCGTC 60.125 61.111 4.18 0.00 0.00 4.79
19 20 2.435938 CATTACACCTGCGCCCGT 60.436 61.111 4.18 0.00 0.00 5.28
20 21 1.095228 ATTCATTACACCTGCGCCCG 61.095 55.000 4.18 0.00 0.00 6.13
21 22 0.381801 CATTCATTACACCTGCGCCC 59.618 55.000 4.18 0.00 0.00 6.13
22 23 0.248621 GCATTCATTACACCTGCGCC 60.249 55.000 4.18 0.00 0.00 6.53
23 24 3.240684 GCATTCATTACACCTGCGC 57.759 52.632 0.00 0.00 0.00 6.09
25 26 1.267532 CGTCGCATTCATTACACCTGC 60.268 52.381 0.00 0.00 0.00 4.85
26 27 1.267532 GCGTCGCATTCATTACACCTG 60.268 52.381 13.44 0.00 0.00 4.00
27 28 1.006832 GCGTCGCATTCATTACACCT 58.993 50.000 13.44 0.00 0.00 4.00
28 29 0.724549 TGCGTCGCATTCATTACACC 59.275 50.000 17.58 0.00 31.71 4.16
29 30 1.658596 TCTGCGTCGCATTCATTACAC 59.341 47.619 22.03 0.00 38.13 2.90
30 31 1.926510 CTCTGCGTCGCATTCATTACA 59.073 47.619 22.03 0.00 38.13 2.41
31 32 1.258982 CCTCTGCGTCGCATTCATTAC 59.741 52.381 22.03 0.00 38.13 1.89
32 33 1.134818 ACCTCTGCGTCGCATTCATTA 60.135 47.619 22.03 1.66 38.13 1.90
33 34 0.391661 ACCTCTGCGTCGCATTCATT 60.392 50.000 22.03 1.38 38.13 2.57
34 35 1.086067 CACCTCTGCGTCGCATTCAT 61.086 55.000 22.03 4.32 38.13 2.57
35 36 1.737735 CACCTCTGCGTCGCATTCA 60.738 57.895 22.03 6.92 38.13 2.57
36 37 2.456119 CCACCTCTGCGTCGCATTC 61.456 63.158 22.03 0.00 38.13 2.67
37 38 2.434884 CCACCTCTGCGTCGCATT 60.435 61.111 22.03 2.54 38.13 3.56
38 39 4.457496 CCCACCTCTGCGTCGCAT 62.457 66.667 22.03 2.15 38.13 4.73
42 43 4.101448 ATGGCCCACCTCTGCGTC 62.101 66.667 0.00 0.00 36.63 5.19
43 44 4.101448 GATGGCCCACCTCTGCGT 62.101 66.667 0.00 0.00 36.63 5.24
46 47 3.746949 GAGCGATGGCCCACCTCTG 62.747 68.421 0.00 0.00 41.24 3.35
47 48 3.474570 GAGCGATGGCCCACCTCT 61.475 66.667 0.00 0.00 41.24 3.69
48 49 2.819984 TTTGAGCGATGGCCCACCTC 62.820 60.000 0.00 1.27 41.24 3.85
49 50 2.826777 CTTTGAGCGATGGCCCACCT 62.827 60.000 0.00 0.00 41.24 4.00
50 51 2.361104 TTTGAGCGATGGCCCACC 60.361 61.111 0.00 0.00 41.24 4.61
51 52 0.960364 TTCTTTGAGCGATGGCCCAC 60.960 55.000 0.00 0.00 41.24 4.61
52 53 0.251121 TTTCTTTGAGCGATGGCCCA 60.251 50.000 0.00 0.00 41.24 5.36
53 54 1.106285 ATTTCTTTGAGCGATGGCCC 58.894 50.000 0.00 0.00 41.24 5.80
54 55 4.036734 TGATTATTTCTTTGAGCGATGGCC 59.963 41.667 0.00 0.00 41.24 5.36
55 56 5.173774 TGATTATTTCTTTGAGCGATGGC 57.826 39.130 0.00 0.00 40.37 4.40
56 57 6.732154 ACATGATTATTTCTTTGAGCGATGG 58.268 36.000 0.00 0.00 0.00 3.51
57 58 8.013947 CCTACATGATTATTTCTTTGAGCGATG 58.986 37.037 0.00 0.00 0.00 3.84
58 59 7.933577 TCCTACATGATTATTTCTTTGAGCGAT 59.066 33.333 0.00 0.00 0.00 4.58
59 60 7.224753 GTCCTACATGATTATTTCTTTGAGCGA 59.775 37.037 0.00 0.00 0.00 4.93
60 61 7.225538 AGTCCTACATGATTATTTCTTTGAGCG 59.774 37.037 0.00 0.00 0.00 5.03
61 62 8.443953 AGTCCTACATGATTATTTCTTTGAGC 57.556 34.615 0.00 0.00 0.00 4.26
62 63 9.050601 GGAGTCCTACATGATTATTTCTTTGAG 57.949 37.037 0.41 0.00 0.00 3.02
63 64 7.993183 GGGAGTCCTACATGATTATTTCTTTGA 59.007 37.037 9.58 0.00 0.00 2.69
64 65 7.995488 AGGGAGTCCTACATGATTATTTCTTTG 59.005 37.037 9.58 0.00 42.75 2.77
65 66 8.107196 AGGGAGTCCTACATGATTATTTCTTT 57.893 34.615 9.58 0.00 42.75 2.52
66 67 7.698163 AGGGAGTCCTACATGATTATTTCTT 57.302 36.000 9.58 0.00 42.75 2.52
81 82 4.450305 TTTAGCTCGTATAGGGAGTCCT 57.550 45.455 9.58 0.00 46.96 3.85
82 83 5.725325 ATTTTAGCTCGTATAGGGAGTCC 57.275 43.478 0.00 0.00 34.00 3.85
84 85 8.468399 GCTTATATTTTAGCTCGTATAGGGAGT 58.532 37.037 0.00 0.00 34.57 3.85
85 86 7.644551 CGCTTATATTTTAGCTCGTATAGGGAG 59.355 40.741 0.00 0.00 35.25 4.30
86 87 7.415989 CCGCTTATATTTTAGCTCGTATAGGGA 60.416 40.741 0.00 0.00 35.25 4.20
87 88 6.696148 CCGCTTATATTTTAGCTCGTATAGGG 59.304 42.308 0.00 0.00 35.25 3.53
88 89 6.696148 CCCGCTTATATTTTAGCTCGTATAGG 59.304 42.308 0.00 0.00 35.25 2.57
89 90 7.478322 TCCCGCTTATATTTTAGCTCGTATAG 58.522 38.462 0.00 0.00 35.25 1.31
90 91 7.121759 ACTCCCGCTTATATTTTAGCTCGTATA 59.878 37.037 0.00 0.00 35.25 1.47
91 92 6.071503 ACTCCCGCTTATATTTTAGCTCGTAT 60.072 38.462 0.00 0.00 35.25 3.06
92 93 5.242393 ACTCCCGCTTATATTTTAGCTCGTA 59.758 40.000 0.00 0.00 35.25 3.43
93 94 4.038883 ACTCCCGCTTATATTTTAGCTCGT 59.961 41.667 0.00 0.00 35.25 4.18
94 95 4.386049 CACTCCCGCTTATATTTTAGCTCG 59.614 45.833 0.00 0.00 35.25 5.03
95 96 5.177696 CACACTCCCGCTTATATTTTAGCTC 59.822 44.000 0.00 0.00 35.25 4.09
96 97 5.057149 CACACTCCCGCTTATATTTTAGCT 58.943 41.667 0.00 0.00 35.25 3.32
97 98 5.054477 TCACACTCCCGCTTATATTTTAGC 58.946 41.667 0.00 0.00 0.00 3.09
98 99 7.657761 AGATTCACACTCCCGCTTATATTTTAG 59.342 37.037 0.00 0.00 0.00 1.85
99 100 7.441157 CAGATTCACACTCCCGCTTATATTTTA 59.559 37.037 0.00 0.00 0.00 1.52
100 101 6.260936 CAGATTCACACTCCCGCTTATATTTT 59.739 38.462 0.00 0.00 0.00 1.82
101 102 5.760253 CAGATTCACACTCCCGCTTATATTT 59.240 40.000 0.00 0.00 0.00 1.40
102 103 5.300752 CAGATTCACACTCCCGCTTATATT 58.699 41.667 0.00 0.00 0.00 1.28
103 104 4.262635 CCAGATTCACACTCCCGCTTATAT 60.263 45.833 0.00 0.00 0.00 0.86
104 105 3.069586 CCAGATTCACACTCCCGCTTATA 59.930 47.826 0.00 0.00 0.00 0.98
105 106 2.158900 CCAGATTCACACTCCCGCTTAT 60.159 50.000 0.00 0.00 0.00 1.73
106 107 1.207089 CCAGATTCACACTCCCGCTTA 59.793 52.381 0.00 0.00 0.00 3.09
107 108 0.036010 CCAGATTCACACTCCCGCTT 60.036 55.000 0.00 0.00 0.00 4.68
108 109 0.904865 TCCAGATTCACACTCCCGCT 60.905 55.000 0.00 0.00 0.00 5.52
109 110 0.036388 TTCCAGATTCACACTCCCGC 60.036 55.000 0.00 0.00 0.00 6.13
110 111 1.550524 TCTTCCAGATTCACACTCCCG 59.449 52.381 0.00 0.00 0.00 5.14
111 112 3.703001 TTCTTCCAGATTCACACTCCC 57.297 47.619 0.00 0.00 0.00 4.30
112 113 3.438434 GCTTTCTTCCAGATTCACACTCC 59.562 47.826 0.00 0.00 0.00 3.85
113 114 4.067896 TGCTTTCTTCCAGATTCACACTC 58.932 43.478 0.00 0.00 0.00 3.51
114 115 4.070716 CTGCTTTCTTCCAGATTCACACT 58.929 43.478 0.00 0.00 0.00 3.55
115 116 4.067896 TCTGCTTTCTTCCAGATTCACAC 58.932 43.478 0.00 0.00 33.44 3.82
116 117 4.067896 GTCTGCTTTCTTCCAGATTCACA 58.932 43.478 0.00 0.00 39.95 3.58
117 118 3.124297 CGTCTGCTTTCTTCCAGATTCAC 59.876 47.826 0.00 0.00 39.95 3.18
118 119 3.329386 CGTCTGCTTTCTTCCAGATTCA 58.671 45.455 0.00 0.00 39.95 2.57
119 120 2.675348 CCGTCTGCTTTCTTCCAGATTC 59.325 50.000 0.00 0.00 39.95 2.52
120 121 2.303022 TCCGTCTGCTTTCTTCCAGATT 59.697 45.455 0.00 0.00 39.95 2.40
121 122 1.902508 TCCGTCTGCTTTCTTCCAGAT 59.097 47.619 0.00 0.00 39.95 2.90
122 123 1.338107 TCCGTCTGCTTTCTTCCAGA 58.662 50.000 0.00 0.00 35.84 3.86
123 124 2.005451 CATCCGTCTGCTTTCTTCCAG 58.995 52.381 0.00 0.00 0.00 3.86
124 125 1.347707 ACATCCGTCTGCTTTCTTCCA 59.652 47.619 0.00 0.00 0.00 3.53
125 126 1.734465 CACATCCGTCTGCTTTCTTCC 59.266 52.381 0.00 0.00 0.00 3.46
126 127 2.688507 TCACATCCGTCTGCTTTCTTC 58.311 47.619 0.00 0.00 0.00 2.87
127 128 2.839486 TCACATCCGTCTGCTTTCTT 57.161 45.000 0.00 0.00 0.00 2.52
128 129 4.471904 TTATCACATCCGTCTGCTTTCT 57.528 40.909 0.00 0.00 0.00 2.52
129 130 4.631813 ACTTTATCACATCCGTCTGCTTTC 59.368 41.667 0.00 0.00 0.00 2.62
130 131 4.393062 CACTTTATCACATCCGTCTGCTTT 59.607 41.667 0.00 0.00 0.00 3.51
131 132 3.935203 CACTTTATCACATCCGTCTGCTT 59.065 43.478 0.00 0.00 0.00 3.91
132 133 3.055819 ACACTTTATCACATCCGTCTGCT 60.056 43.478 0.00 0.00 0.00 4.24
133 134 3.062639 CACACTTTATCACATCCGTCTGC 59.937 47.826 0.00 0.00 0.00 4.26
134 135 3.062639 GCACACTTTATCACATCCGTCTG 59.937 47.826 0.00 0.00 0.00 3.51
135 136 3.262420 GCACACTTTATCACATCCGTCT 58.738 45.455 0.00 0.00 0.00 4.18
136 137 3.000041 TGCACACTTTATCACATCCGTC 59.000 45.455 0.00 0.00 0.00 4.79
137 138 3.002791 CTGCACACTTTATCACATCCGT 58.997 45.455 0.00 0.00 0.00 4.69
138 139 2.352651 CCTGCACACTTTATCACATCCG 59.647 50.000 0.00 0.00 0.00 4.18
139 140 3.127548 CACCTGCACACTTTATCACATCC 59.872 47.826 0.00 0.00 0.00 3.51
140 141 3.753272 ACACCTGCACACTTTATCACATC 59.247 43.478 0.00 0.00 0.00 3.06
141 142 3.503363 CACACCTGCACACTTTATCACAT 59.497 43.478 0.00 0.00 0.00 3.21
142 143 2.877786 CACACCTGCACACTTTATCACA 59.122 45.455 0.00 0.00 0.00 3.58
143 144 2.350772 GCACACCTGCACACTTTATCAC 60.351 50.000 0.00 0.00 43.62 3.06
144 145 1.879380 GCACACCTGCACACTTTATCA 59.121 47.619 0.00 0.00 43.62 2.15
145 146 2.154462 AGCACACCTGCACACTTTATC 58.846 47.619 0.00 0.00 46.97 1.75
146 147 2.154462 GAGCACACCTGCACACTTTAT 58.846 47.619 0.00 0.00 46.97 1.40
147 148 1.593196 GAGCACACCTGCACACTTTA 58.407 50.000 0.00 0.00 46.97 1.85
148 149 1.439353 CGAGCACACCTGCACACTTT 61.439 55.000 0.00 0.00 46.97 2.66
149 150 1.889105 CGAGCACACCTGCACACTT 60.889 57.895 0.00 0.00 46.97 3.16
150 151 2.280389 CGAGCACACCTGCACACT 60.280 61.111 0.00 0.00 46.97 3.55
151 152 3.349006 CCGAGCACACCTGCACAC 61.349 66.667 0.00 0.00 46.97 3.82
152 153 4.624364 CCCGAGCACACCTGCACA 62.624 66.667 0.00 0.00 46.97 4.57
156 157 1.960040 TATGAGCCCGAGCACACCTG 61.960 60.000 0.00 0.00 42.60 4.00
157 158 1.264749 TTATGAGCCCGAGCACACCT 61.265 55.000 0.00 0.00 42.60 4.00
158 159 0.811616 CTTATGAGCCCGAGCACACC 60.812 60.000 0.00 0.00 42.60 4.16
159 160 0.175760 TCTTATGAGCCCGAGCACAC 59.824 55.000 0.00 0.00 42.60 3.82
160 161 0.461548 CTCTTATGAGCCCGAGCACA 59.538 55.000 0.00 0.00 43.97 4.57
161 162 3.280920 CTCTTATGAGCCCGAGCAC 57.719 57.895 0.00 0.00 43.56 4.40
170 171 2.593346 AGCGGAAGTGCTCTTATGAG 57.407 50.000 0.04 1.25 42.95 2.90
171 172 3.024547 AGTAGCGGAAGTGCTCTTATGA 58.975 45.455 0.04 0.00 45.87 2.15
172 173 3.119291 CAGTAGCGGAAGTGCTCTTATG 58.881 50.000 0.04 0.00 45.87 1.90
173 174 2.761208 ACAGTAGCGGAAGTGCTCTTAT 59.239 45.455 0.04 0.00 45.87 1.73
174 175 2.168496 ACAGTAGCGGAAGTGCTCTTA 58.832 47.619 0.04 0.00 45.87 2.10
175 176 0.969894 ACAGTAGCGGAAGTGCTCTT 59.030 50.000 0.00 0.00 45.87 2.85
176 177 1.835494 TACAGTAGCGGAAGTGCTCT 58.165 50.000 0.00 0.00 45.87 4.09
177 178 2.649331 TTACAGTAGCGGAAGTGCTC 57.351 50.000 0.00 0.00 45.87 4.26
179 180 2.888594 TGATTACAGTAGCGGAAGTGC 58.111 47.619 0.00 0.00 0.00 4.40
180 181 4.495422 AGTTGATTACAGTAGCGGAAGTG 58.505 43.478 0.00 0.00 0.00 3.16
181 182 4.803098 AGTTGATTACAGTAGCGGAAGT 57.197 40.909 0.00 0.00 0.00 3.01
182 183 6.978659 TGATTAGTTGATTACAGTAGCGGAAG 59.021 38.462 0.00 0.00 0.00 3.46
183 184 6.869695 TGATTAGTTGATTACAGTAGCGGAA 58.130 36.000 0.00 0.00 0.00 4.30
184 185 6.096423 ACTGATTAGTTGATTACAGTAGCGGA 59.904 38.462 0.00 0.00 36.94 5.54
185 186 6.273825 ACTGATTAGTTGATTACAGTAGCGG 58.726 40.000 0.00 0.00 36.94 5.52
186 187 8.495554 CTACTGATTAGTTGATTACAGTAGCG 57.504 38.462 15.60 0.19 45.23 4.26
195 196 8.652290 GGAGGGAATACTACTGATTAGTTGATT 58.348 37.037 6.11 2.40 41.60 2.57
196 197 7.039644 CGGAGGGAATACTACTGATTAGTTGAT 60.040 40.741 6.11 0.00 41.60 2.57
197 198 6.264744 CGGAGGGAATACTACTGATTAGTTGA 59.735 42.308 6.11 0.00 41.60 3.18
198 199 6.040616 ACGGAGGGAATACTACTGATTAGTTG 59.959 42.308 0.00 0.00 41.60 3.16
199 200 6.134754 ACGGAGGGAATACTACTGATTAGTT 58.865 40.000 0.00 0.00 41.60 2.24
200 201 5.703310 ACGGAGGGAATACTACTGATTAGT 58.297 41.667 0.00 0.00 43.89 2.24
201 202 6.651975 AACGGAGGGAATACTACTGATTAG 57.348 41.667 0.00 0.00 0.00 1.73
202 203 6.183360 CCAAACGGAGGGAATACTACTGATTA 60.183 42.308 0.00 0.00 0.00 1.75
203 204 5.396436 CCAAACGGAGGGAATACTACTGATT 60.396 44.000 0.00 0.00 0.00 2.57
204 205 4.101119 CCAAACGGAGGGAATACTACTGAT 59.899 45.833 0.00 0.00 0.00 2.90
205 206 3.449737 CCAAACGGAGGGAATACTACTGA 59.550 47.826 0.00 0.00 0.00 3.41
206 207 3.449737 TCCAAACGGAGGGAATACTACTG 59.550 47.826 0.00 0.00 0.00 2.74
207 208 3.716431 TCCAAACGGAGGGAATACTACT 58.284 45.455 0.00 0.00 0.00 2.57
208 209 4.476628 TTCCAAACGGAGGGAATACTAC 57.523 45.455 0.47 0.00 38.23 2.73
214 215 5.081032 ACAAATAATTCCAAACGGAGGGAA 58.919 37.500 6.43 6.43 46.48 3.97
215 216 4.668636 ACAAATAATTCCAAACGGAGGGA 58.331 39.130 0.00 0.00 32.88 4.20
216 217 4.461081 TGACAAATAATTCCAAACGGAGGG 59.539 41.667 0.00 0.00 32.88 4.30
217 218 5.048364 TGTGACAAATAATTCCAAACGGAGG 60.048 40.000 0.00 0.00 32.88 4.30
218 219 6.007936 TGTGACAAATAATTCCAAACGGAG 57.992 37.500 0.00 0.00 32.88 4.63
219 220 6.392625 TTGTGACAAATAATTCCAAACGGA 57.607 33.333 0.00 0.00 0.00 4.69
220 221 6.865726 TCATTGTGACAAATAATTCCAAACGG 59.134 34.615 0.62 0.00 0.00 4.44
221 222 7.865875 TCATTGTGACAAATAATTCCAAACG 57.134 32.000 0.62 0.00 0.00 3.60
222 223 9.421806 TCATCATTGTGACAAATAATTCCAAAC 57.578 29.630 0.62 0.00 0.00 2.93
223 224 9.993454 TTCATCATTGTGACAAATAATTCCAAA 57.007 25.926 0.62 0.00 0.00 3.28
225 226 9.589111 CATTCATCATTGTGACAAATAATTCCA 57.411 29.630 0.62 0.00 0.00 3.53
226 227 9.590451 ACATTCATCATTGTGACAAATAATTCC 57.410 29.630 0.62 0.00 0.00 3.01
233 234 9.447157 TGTAGATACATTCATCATTGTGACAAA 57.553 29.630 0.62 0.00 0.00 2.83
234 235 9.447157 TTGTAGATACATTCATCATTGTGACAA 57.553 29.630 0.00 0.00 35.89 3.18
235 236 8.882736 GTTGTAGATACATTCATCATTGTGACA 58.117 33.333 0.00 0.00 35.89 3.58
236 237 9.102757 AGTTGTAGATACATTCATCATTGTGAC 57.897 33.333 0.00 0.00 35.89 3.67
284 285 8.395633 CCATTCGGAATTACTCGTTTAAGAAAT 58.604 33.333 0.00 0.00 0.00 2.17
285 286 7.603404 TCCATTCGGAATTACTCGTTTAAGAAA 59.397 33.333 0.00 0.00 38.83 2.52
286 287 7.098477 TCCATTCGGAATTACTCGTTTAAGAA 58.902 34.615 0.00 0.00 38.83 2.52
287 288 6.632909 TCCATTCGGAATTACTCGTTTAAGA 58.367 36.000 0.00 0.00 38.83 2.10
288 289 6.018994 CCTCCATTCGGAATTACTCGTTTAAG 60.019 42.308 0.00 0.00 42.21 1.85
289 290 5.813672 CCTCCATTCGGAATTACTCGTTTAA 59.186 40.000 0.00 0.00 42.21 1.52
290 291 5.127519 TCCTCCATTCGGAATTACTCGTTTA 59.872 40.000 0.00 0.00 42.21 2.01
291 292 4.081309 TCCTCCATTCGGAATTACTCGTTT 60.081 41.667 0.00 0.00 42.21 3.60
292 293 3.449737 TCCTCCATTCGGAATTACTCGTT 59.550 43.478 0.00 0.00 42.21 3.85
293 294 3.028850 TCCTCCATTCGGAATTACTCGT 58.971 45.455 0.00 0.00 42.21 4.18
294 295 3.728076 TCCTCCATTCGGAATTACTCG 57.272 47.619 0.00 0.00 42.21 4.18
295 296 5.024785 ACTTCCTCCATTCGGAATTACTC 57.975 43.478 0.00 0.00 42.21 2.59
296 297 5.661759 ACTACTTCCTCCATTCGGAATTACT 59.338 40.000 0.00 0.00 42.21 2.24
297 298 5.915175 ACTACTTCCTCCATTCGGAATTAC 58.085 41.667 0.00 0.00 42.21 1.89
298 299 6.238842 CGTACTACTTCCTCCATTCGGAATTA 60.239 42.308 0.00 0.00 42.21 1.40
299 300 5.451520 CGTACTACTTCCTCCATTCGGAATT 60.452 44.000 0.00 0.00 42.21 2.17
300 301 4.037684 CGTACTACTTCCTCCATTCGGAAT 59.962 45.833 0.00 0.00 42.21 3.01
301 302 3.379372 CGTACTACTTCCTCCATTCGGAA 59.621 47.826 0.00 0.00 42.21 4.30
302 303 2.947652 CGTACTACTTCCTCCATTCGGA 59.052 50.000 0.00 0.00 39.79 4.55
303 304 2.686915 ACGTACTACTTCCTCCATTCGG 59.313 50.000 0.00 0.00 0.00 4.30
304 305 4.554330 GCTACGTACTACTTCCTCCATTCG 60.554 50.000 0.00 0.00 0.00 3.34
305 306 4.337555 TGCTACGTACTACTTCCTCCATTC 59.662 45.833 0.00 0.00 0.00 2.67
306 307 4.275810 TGCTACGTACTACTTCCTCCATT 58.724 43.478 0.00 0.00 0.00 3.16
307 308 3.884091 CTGCTACGTACTACTTCCTCCAT 59.116 47.826 0.00 0.00 0.00 3.41
308 309 3.276857 CTGCTACGTACTACTTCCTCCA 58.723 50.000 0.00 0.00 0.00 3.86
309 310 3.277715 ACTGCTACGTACTACTTCCTCC 58.722 50.000 0.00 0.00 0.00 4.30
310 311 5.503846 GCTTACTGCTACGTACTACTTCCTC 60.504 48.000 0.00 0.00 38.95 3.71
311 312 4.335037 GCTTACTGCTACGTACTACTTCCT 59.665 45.833 0.00 0.00 38.95 3.36
312 313 4.095483 TGCTTACTGCTACGTACTACTTCC 59.905 45.833 0.00 0.00 43.37 3.46
313 314 5.027099 GTGCTTACTGCTACGTACTACTTC 58.973 45.833 0.00 0.00 43.37 3.01
314 315 4.699257 AGTGCTTACTGCTACGTACTACTT 59.301 41.667 0.00 0.00 43.37 2.24
315 316 4.260170 AGTGCTTACTGCTACGTACTACT 58.740 43.478 0.00 0.00 43.37 2.57
316 317 4.612932 AGTGCTTACTGCTACGTACTAC 57.387 45.455 0.00 0.00 43.37 2.73
317 318 5.423015 ACTAGTGCTTACTGCTACGTACTA 58.577 41.667 0.00 0.00 43.37 1.82
318 319 4.260170 ACTAGTGCTTACTGCTACGTACT 58.740 43.478 0.00 0.00 43.37 2.73
319 320 4.612932 ACTAGTGCTTACTGCTACGTAC 57.387 45.455 0.00 0.00 43.37 3.67
320 321 5.423015 ACTACTAGTGCTTACTGCTACGTA 58.577 41.667 5.39 0.00 43.37 3.57
341 342 5.053978 AGACTTTTTCTGTGATCCCAACT 57.946 39.130 0.00 0.00 31.12 3.16
343 344 4.398319 GGAGACTTTTTCTGTGATCCCAA 58.602 43.478 0.00 0.00 33.22 4.12
344 345 3.557054 CGGAGACTTTTTCTGTGATCCCA 60.557 47.826 0.00 0.00 33.22 4.37
345 346 3.003480 CGGAGACTTTTTCTGTGATCCC 58.997 50.000 0.00 0.00 33.22 3.85
346 347 2.416893 GCGGAGACTTTTTCTGTGATCC 59.583 50.000 0.00 0.00 33.22 3.36
347 348 2.092838 CGCGGAGACTTTTTCTGTGATC 59.907 50.000 0.00 0.00 33.22 2.92
349 350 1.202486 ACGCGGAGACTTTTTCTGTGA 60.202 47.619 12.47 0.00 35.81 3.58
350 351 1.192534 GACGCGGAGACTTTTTCTGTG 59.807 52.381 12.47 0.00 37.44 3.66
352 353 1.457303 CTGACGCGGAGACTTTTTCTG 59.543 52.381 12.47 0.00 33.22 3.02
353 354 1.784525 CTGACGCGGAGACTTTTTCT 58.215 50.000 12.47 0.00 37.23 2.52
354 355 0.164002 GCTGACGCGGAGACTTTTTC 59.836 55.000 12.47 0.00 0.00 2.29
368 369 4.036971 CCGGCCTGTATATCTATAGCTGAC 59.963 50.000 0.00 0.00 0.00 3.51
473 474 5.018149 GGGGGATGAAGATAGGTAGTACTC 58.982 50.000 0.00 0.00 0.00 2.59
488 511 1.612199 GCTTAAACGTGTGGGGGATGA 60.612 52.381 0.00 0.00 0.00 2.92
525 548 0.461961 GGAGGTGAAGGTCGAGATGG 59.538 60.000 0.00 0.00 0.00 3.51
527 550 0.688087 GGGGAGGTGAAGGTCGAGAT 60.688 60.000 0.00 0.00 0.00 2.75
528 551 1.305046 GGGGAGGTGAAGGTCGAGA 60.305 63.158 0.00 0.00 0.00 4.04
529 552 0.905337 AAGGGGAGGTGAAGGTCGAG 60.905 60.000 0.00 0.00 0.00 4.04
530 553 1.157751 AAGGGGAGGTGAAGGTCGA 59.842 57.895 0.00 0.00 0.00 4.20
543 1496 0.673644 CGGAGCAAGTACACAAGGGG 60.674 60.000 0.00 0.00 0.00 4.79
580 1533 9.555727 AGTAGTTTGTAGTGCAATCTCTAAAAA 57.444 29.630 7.69 0.00 37.97 1.94
581 1534 9.204570 GAGTAGTTTGTAGTGCAATCTCTAAAA 57.795 33.333 7.69 0.00 37.97 1.52
582 1535 7.817962 GGAGTAGTTTGTAGTGCAATCTCTAAA 59.182 37.037 7.69 0.00 37.97 1.85
583 1536 7.321153 GGAGTAGTTTGTAGTGCAATCTCTAA 58.679 38.462 7.69 0.00 37.97 2.10
584 1537 6.127423 GGGAGTAGTTTGTAGTGCAATCTCTA 60.127 42.308 7.69 3.30 37.97 2.43
585 1538 5.337652 GGGAGTAGTTTGTAGTGCAATCTCT 60.338 44.000 7.69 5.97 37.97 3.10
586 1539 4.870991 GGGAGTAGTTTGTAGTGCAATCTC 59.129 45.833 7.69 7.35 37.97 2.75
587 1540 4.532521 AGGGAGTAGTTTGTAGTGCAATCT 59.467 41.667 9.16 9.16 39.60 2.40
588 1541 4.833390 AGGGAGTAGTTTGTAGTGCAATC 58.167 43.478 0.00 0.00 36.89 2.67
589 1542 4.323562 GGAGGGAGTAGTTTGTAGTGCAAT 60.324 45.833 0.00 0.00 36.89 3.56
590 1543 3.007614 GGAGGGAGTAGTTTGTAGTGCAA 59.992 47.826 0.00 0.00 34.87 4.08
591 1544 2.565834 GGAGGGAGTAGTTTGTAGTGCA 59.434 50.000 0.00 0.00 0.00 4.57
592 1545 2.416972 CGGAGGGAGTAGTTTGTAGTGC 60.417 54.545 0.00 0.00 0.00 4.40
593 1546 2.824341 ACGGAGGGAGTAGTTTGTAGTG 59.176 50.000 0.00 0.00 0.00 2.74
594 1547 3.166560 ACGGAGGGAGTAGTTTGTAGT 57.833 47.619 0.00 0.00 0.00 2.73
595 1548 4.532314 AAACGGAGGGAGTAGTTTGTAG 57.468 45.455 0.00 0.00 35.74 2.74
596 1549 4.961438 AAAACGGAGGGAGTAGTTTGTA 57.039 40.909 0.00 0.00 36.97 2.41
597 1550 3.851458 AAAACGGAGGGAGTAGTTTGT 57.149 42.857 0.00 0.00 36.97 2.83
598 1551 6.622833 TTTAAAAACGGAGGGAGTAGTTTG 57.377 37.500 0.00 0.00 36.97 2.93
601 1554 9.828039 CTTATATTTAAAAACGGAGGGAGTAGT 57.172 33.333 0.00 0.00 0.00 2.73
602 1555 9.828039 ACTTATATTTAAAAACGGAGGGAGTAG 57.172 33.333 0.00 0.00 0.00 2.57
603 1556 9.822185 GACTTATATTTAAAAACGGAGGGAGTA 57.178 33.333 0.00 0.00 0.00 2.59
604 1557 8.546322 AGACTTATATTTAAAAACGGAGGGAGT 58.454 33.333 0.00 0.00 0.00 3.85
605 1558 8.959705 AGACTTATATTTAAAAACGGAGGGAG 57.040 34.615 0.00 0.00 0.00 4.30
606 1559 9.743581 AAAGACTTATATTTAAAAACGGAGGGA 57.256 29.630 0.00 0.00 0.00 4.20
607 1560 9.783256 CAAAGACTTATATTTAAAAACGGAGGG 57.217 33.333 0.00 0.00 0.00 4.30
626 1579 9.606631 GTTCATAATGGAATCTCTACAAAGACT 57.393 33.333 0.00 0.00 0.00 3.24
627 1580 8.831550 GGTTCATAATGGAATCTCTACAAAGAC 58.168 37.037 0.00 0.00 0.00 3.01
628 1581 8.548025 TGGTTCATAATGGAATCTCTACAAAGA 58.452 33.333 0.00 0.00 0.00 2.52
629 1582 8.737168 TGGTTCATAATGGAATCTCTACAAAG 57.263 34.615 0.00 0.00 0.00 2.77
635 1588 8.260818 CCGTATATGGTTCATAATGGAATCTCT 58.739 37.037 2.46 0.00 29.74 3.10
636 1589 8.258007 TCCGTATATGGTTCATAATGGAATCTC 58.742 37.037 10.85 0.00 29.74 2.75
637 1590 8.146053 TCCGTATATGGTTCATAATGGAATCT 57.854 34.615 10.85 0.00 29.74 2.40
638 1591 8.830580 CATCCGTATATGGTTCATAATGGAATC 58.169 37.037 10.85 0.00 32.29 2.52
639 1592 8.328758 ACATCCGTATATGGTTCATAATGGAAT 58.671 33.333 10.85 0.00 32.29 3.01
640 1593 7.685481 ACATCCGTATATGGTTCATAATGGAA 58.315 34.615 10.85 0.00 32.29 3.53
641 1594 7.252612 ACATCCGTATATGGTTCATAATGGA 57.747 36.000 10.85 10.46 32.66 3.41
681 1634 9.362539 GAAGCAAAATGAATGAATCTACACATT 57.637 29.630 0.00 0.00 39.06 2.71
682 1635 8.525316 TGAAGCAAAATGAATGAATCTACACAT 58.475 29.630 0.00 0.00 0.00 3.21
683 1636 7.884257 TGAAGCAAAATGAATGAATCTACACA 58.116 30.769 0.00 0.00 0.00 3.72
684 1637 8.922058 ATGAAGCAAAATGAATGAATCTACAC 57.078 30.769 0.00 0.00 0.00 2.90
688 1641 9.529325 CACATATGAAGCAAAATGAATGAATCT 57.471 29.630 10.38 0.00 0.00 2.40
689 1642 9.309516 ACACATATGAAGCAAAATGAATGAATC 57.690 29.630 10.38 0.00 0.00 2.52
690 1643 9.661563 AACACATATGAAGCAAAATGAATGAAT 57.338 25.926 10.38 0.00 0.00 2.57
691 1644 9.491675 AAACACATATGAAGCAAAATGAATGAA 57.508 25.926 10.38 0.00 0.00 2.57
692 1645 9.142515 GAAACACATATGAAGCAAAATGAATGA 57.857 29.630 10.38 0.00 0.00 2.57
693 1646 8.927721 TGAAACACATATGAAGCAAAATGAATG 58.072 29.630 10.38 0.00 0.00 2.67
694 1647 9.661563 ATGAAACACATATGAAGCAAAATGAAT 57.338 25.926 10.38 0.00 37.46 2.57
696 1649 9.791820 CTATGAAACACATATGAAGCAAAATGA 57.208 29.630 10.38 0.00 40.18 2.57
697 1650 9.577110 ACTATGAAACACATATGAAGCAAAATG 57.423 29.630 10.38 0.00 40.18 2.32
698 1651 9.577110 CACTATGAAACACATATGAAGCAAAAT 57.423 29.630 10.38 0.00 40.18 1.82
699 1652 8.791675 TCACTATGAAACACATATGAAGCAAAA 58.208 29.630 10.38 0.00 40.18 2.44
700 1653 8.334263 TCACTATGAAACACATATGAAGCAAA 57.666 30.769 10.38 0.00 40.18 3.68
701 1654 7.920160 TCACTATGAAACACATATGAAGCAA 57.080 32.000 10.38 0.00 40.18 3.91
702 1655 7.920160 TTCACTATGAAACACATATGAAGCA 57.080 32.000 10.38 0.68 40.18 3.91
733 1686 9.595823 CCTCCGTTCTTTAATATAAGTCTTTGA 57.404 33.333 0.00 0.00 0.00 2.69
734 1687 8.827677 CCCTCCGTTCTTTAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
735 1688 8.765517 TCCCTCCGTTCTTTAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
736 1689 8.315220 TCCCTCCGTTCTTTAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
737 1690 7.564292 ACTCCCTCCGTTCTTTAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
738 1691 7.724287 ACTCCCTCCGTTCTTTAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
739 1692 7.672122 ACTCCCTCCGTTCTTTAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
740 1693 8.636213 TGTACTCCCTCCGTTCTTTAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
741 1694 8.537728 TGTACTCCCTCCGTTCTTTAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
742 1695 8.716674 ATGTACTCCCTCCGTTCTTTAATATA 57.283 34.615 0.00 0.00 0.00 0.86
743 1696 7.613551 ATGTACTCCCTCCGTTCTTTAATAT 57.386 36.000 0.00 0.00 0.00 1.28
744 1697 7.255242 CGTATGTACTCCCTCCGTTCTTTAATA 60.255 40.741 0.00 0.00 0.00 0.98
745 1698 5.952347 ATGTACTCCCTCCGTTCTTTAAT 57.048 39.130 0.00 0.00 0.00 1.40
746 1699 5.163622 CGTATGTACTCCCTCCGTTCTTTAA 60.164 44.000 0.00 0.00 0.00 1.52
747 1700 4.336433 CGTATGTACTCCCTCCGTTCTTTA 59.664 45.833 0.00 0.00 0.00 1.85
748 1701 3.129988 CGTATGTACTCCCTCCGTTCTTT 59.870 47.826 0.00 0.00 0.00 2.52
749 1702 2.686915 CGTATGTACTCCCTCCGTTCTT 59.313 50.000 0.00 0.00 0.00 2.52
750 1703 2.295885 CGTATGTACTCCCTCCGTTCT 58.704 52.381 0.00 0.00 0.00 3.01
751 1704 1.336125 CCGTATGTACTCCCTCCGTTC 59.664 57.143 0.00 0.00 0.00 3.95
752 1705 1.064463 TCCGTATGTACTCCCTCCGTT 60.064 52.381 0.00 0.00 0.00 4.44
753 1706 0.548031 TCCGTATGTACTCCCTCCGT 59.452 55.000 0.00 0.00 0.00 4.69
754 1707 1.540267 CATCCGTATGTACTCCCTCCG 59.460 57.143 0.00 0.00 0.00 4.63
755 1708 2.595238 ACATCCGTATGTACTCCCTCC 58.405 52.381 0.00 0.00 44.66 4.30
792 1745 9.467258 CACAACAAAATGAATGAATCTACACTT 57.533 29.630 0.00 0.00 0.00 3.16
793 1746 8.632679 ACACAACAAAATGAATGAATCTACACT 58.367 29.630 0.00 0.00 0.00 3.55
794 1747 8.801715 ACACAACAAAATGAATGAATCTACAC 57.198 30.769 0.00 0.00 0.00 2.90
801 1754 9.891828 GACTACATACACAACAAAATGAATGAA 57.108 29.630 0.00 0.00 0.00 2.57
802 1755 9.283768 AGACTACATACACAACAAAATGAATGA 57.716 29.630 0.00 0.00 0.00 2.57
809 1762 9.146984 GCACTATAGACTACATACACAACAAAA 57.853 33.333 6.78 0.00 0.00 2.44
810 1763 8.308207 TGCACTATAGACTACATACACAACAAA 58.692 33.333 6.78 0.00 0.00 2.83
811 1764 7.832769 TGCACTATAGACTACATACACAACAA 58.167 34.615 6.78 0.00 0.00 2.83
812 1765 7.399245 TGCACTATAGACTACATACACAACA 57.601 36.000 6.78 0.00 0.00 3.33
813 1766 8.873215 ATTGCACTATAGACTACATACACAAC 57.127 34.615 6.78 0.00 0.00 3.32
814 1767 8.914011 AGATTGCACTATAGACTACATACACAA 58.086 33.333 6.78 0.00 0.00 3.33
815 1768 8.465273 AGATTGCACTATAGACTACATACACA 57.535 34.615 6.78 0.00 0.00 3.72
816 1769 9.751542 AAAGATTGCACTATAGACTACATACAC 57.248 33.333 6.78 0.00 0.00 2.90
847 1800 9.777008 CTCCTCCCTTCCTAAATATATAAGTCT 57.223 37.037 0.00 0.00 0.00 3.24
848 1801 8.983789 CCTCCTCCCTTCCTAAATATATAAGTC 58.016 40.741 0.00 0.00 0.00 3.01
849 1802 8.698476 TCCTCCTCCCTTCCTAAATATATAAGT 58.302 37.037 0.00 0.00 0.00 2.24
850 1803 9.562226 TTCCTCCTCCCTTCCTAAATATATAAG 57.438 37.037 0.00 0.00 0.00 1.73
851 1804 9.562226 CTTCCTCCTCCCTTCCTAAATATATAA 57.438 37.037 0.00 0.00 0.00 0.98
852 1805 8.129656 CCTTCCTCCTCCCTTCCTAAATATATA 58.870 40.741 0.00 0.00 0.00 0.86
853 1806 6.968845 CCTTCCTCCTCCCTTCCTAAATATAT 59.031 42.308 0.00 0.00 0.00 0.86
854 1807 6.331846 CCTTCCTCCTCCCTTCCTAAATATA 58.668 44.000 0.00 0.00 0.00 0.86
855 1808 5.166407 CCTTCCTCCTCCCTTCCTAAATAT 58.834 45.833 0.00 0.00 0.00 1.28
856 1809 4.567857 CCTTCCTCCTCCCTTCCTAAATA 58.432 47.826 0.00 0.00 0.00 1.40
857 1810 3.398490 CCTTCCTCCTCCCTTCCTAAAT 58.602 50.000 0.00 0.00 0.00 1.40
858 1811 2.564524 CCCTTCCTCCTCCCTTCCTAAA 60.565 54.545 0.00 0.00 0.00 1.85
859 1812 1.009675 CCCTTCCTCCTCCCTTCCTAA 59.990 57.143 0.00 0.00 0.00 2.69
860 1813 0.642710 CCCTTCCTCCTCCCTTCCTA 59.357 60.000 0.00 0.00 0.00 2.94
861 1814 1.162951 TCCCTTCCTCCTCCCTTCCT 61.163 60.000 0.00 0.00 0.00 3.36
862 1815 0.692756 CTCCCTTCCTCCTCCCTTCC 60.693 65.000 0.00 0.00 0.00 3.46
863 1816 0.043485 ACTCCCTTCCTCCTCCCTTC 59.957 60.000 0.00 0.00 0.00 3.46
864 1817 1.292546 CTACTCCCTTCCTCCTCCCTT 59.707 57.143 0.00 0.00 0.00 3.95
865 1818 0.938192 CTACTCCCTTCCTCCTCCCT 59.062 60.000 0.00 0.00 0.00 4.20
866 1819 0.637743 ACTACTCCCTTCCTCCTCCC 59.362 60.000 0.00 0.00 0.00 4.30
867 1820 2.112190 CAACTACTCCCTTCCTCCTCC 58.888 57.143 0.00 0.00 0.00 4.30
868 1821 1.483004 GCAACTACTCCCTTCCTCCTC 59.517 57.143 0.00 0.00 0.00 3.71
869 1822 1.574263 GCAACTACTCCCTTCCTCCT 58.426 55.000 0.00 0.00 0.00 3.69
870 1823 0.175989 CGCAACTACTCCCTTCCTCC 59.824 60.000 0.00 0.00 0.00 4.30
871 1824 0.896226 ACGCAACTACTCCCTTCCTC 59.104 55.000 0.00 0.00 0.00 3.71
872 1825 0.608640 CACGCAACTACTCCCTTCCT 59.391 55.000 0.00 0.00 0.00 3.36
873 1826 0.320697 ACACGCAACTACTCCCTTCC 59.679 55.000 0.00 0.00 0.00 3.46
874 1827 1.429463 CACACGCAACTACTCCCTTC 58.571 55.000 0.00 0.00 0.00 3.46
875 1828 0.602905 GCACACGCAACTACTCCCTT 60.603 55.000 0.00 0.00 38.36 3.95
876 1829 1.004918 GCACACGCAACTACTCCCT 60.005 57.895 0.00 0.00 38.36 4.20
877 1830 3.562635 GCACACGCAACTACTCCC 58.437 61.111 0.00 0.00 38.36 4.30
887 1840 3.463533 TTTATACACACATGCACACGC 57.536 42.857 0.00 0.00 39.24 5.34
888 1841 8.331742 TGTTATATTTATACACACATGCACACG 58.668 33.333 0.00 0.00 0.00 4.49
889 1842 9.433317 GTGTTATATTTATACACACATGCACAC 57.567 33.333 0.00 0.00 38.11 3.82
890 1843 9.167311 TGTGTTATATTTATACACACATGCACA 57.833 29.630 14.67 0.00 42.12 4.57
945 1918 1.992557 TGATTATGGGAGGTATGGGGC 59.007 52.381 0.00 0.00 0.00 5.80
990 1963 0.250234 CGCCTCCCATGAGTTGAAGA 59.750 55.000 0.00 0.00 36.86 2.87
991 1964 1.372087 GCGCCTCCCATGAGTTGAAG 61.372 60.000 0.00 0.00 36.86 3.02
992 1965 1.377202 GCGCCTCCCATGAGTTGAA 60.377 57.895 0.00 0.00 36.86 2.69
994 1967 1.651240 CTTGCGCCTCCCATGAGTTG 61.651 60.000 4.18 0.00 36.86 3.16
995 1968 1.377725 CTTGCGCCTCCCATGAGTT 60.378 57.895 4.18 0.00 36.86 3.01
1097 2077 2.022129 GCGGTCGGTGTGTCTTCTG 61.022 63.158 0.00 0.00 0.00 3.02
1151 2131 4.697756 CGACTTGGCCTTGGCCGA 62.698 66.667 23.81 21.31 0.00 5.54
1156 2136 1.264288 GTCTTTGACGACTTGGCCTTG 59.736 52.381 3.32 0.00 0.00 3.61
1183 2163 3.032667 GCTCTTCCCCGACCCCTTC 62.033 68.421 0.00 0.00 0.00 3.46
1190 2170 1.984570 CTCCTGTGCTCTTCCCCGA 60.985 63.158 0.00 0.00 0.00 5.14
1191 2171 2.581354 CTCCTGTGCTCTTCCCCG 59.419 66.667 0.00 0.00 0.00 5.73
1407 2396 4.467084 CACCCGCCGCACCTGTAT 62.467 66.667 0.00 0.00 0.00 2.29
1608 2612 2.125912 CTCTTCACCTCCGCCACG 60.126 66.667 0.00 0.00 0.00 4.94
1770 2777 5.497474 ACAAGATAATTACACCCTGTGTCC 58.503 41.667 2.68 0.00 43.92 4.02
1771 2778 8.038944 TCTAACAAGATAATTACACCCTGTGTC 58.961 37.037 2.68 0.00 43.92 3.67
1773 2780 8.830580 CATCTAACAAGATAATTACACCCTGTG 58.169 37.037 0.00 0.00 39.75 3.66
1821 2829 5.008118 CCAAAGAAAGAAGAAGACTGGTGTC 59.992 44.000 0.00 0.00 43.22 3.67
1822 2830 4.884164 CCAAAGAAAGAAGAAGACTGGTGT 59.116 41.667 0.00 0.00 0.00 4.16
1825 2833 6.699575 TTTCCAAAGAAAGAAGAAGACTGG 57.300 37.500 0.00 0.00 37.07 4.00
1826 2834 6.975197 GGTTTTCCAAAGAAAGAAGAAGACTG 59.025 38.462 0.00 0.00 42.78 3.51
1827 2835 6.892456 AGGTTTTCCAAAGAAAGAAGAAGACT 59.108 34.615 0.00 0.00 42.78 3.24
1828 2836 7.101652 AGGTTTTCCAAAGAAAGAAGAAGAC 57.898 36.000 0.00 0.00 42.78 3.01
1829 2837 7.718334 AAGGTTTTCCAAAGAAAGAAGAAGA 57.282 32.000 0.00 0.00 42.78 2.87
1830 2838 8.659491 CAAAAGGTTTTCCAAAGAAAGAAGAAG 58.341 33.333 0.00 0.00 42.78 2.85
1925 3003 2.122564 GGCGCCAAATACTACGTACTC 58.877 52.381 24.80 0.00 0.00 2.59
1926 3004 1.202452 GGGCGCCAAATACTACGTACT 60.202 52.381 30.85 0.00 0.00 2.73
1927 3005 1.211743 GGGCGCCAAATACTACGTAC 58.788 55.000 30.85 0.98 0.00 3.67
1929 3007 1.153309 GGGGCGCCAAATACTACGT 60.153 57.895 30.85 0.00 0.00 3.57
1930 3008 0.534203 ATGGGGCGCCAAATACTACG 60.534 55.000 30.85 0.00 0.00 3.51
1932 3010 0.250124 CGATGGGGCGCCAAATACTA 60.250 55.000 30.85 8.68 0.00 1.82
1934 3012 1.098712 TTCGATGGGGCGCCAAATAC 61.099 55.000 30.85 16.33 0.00 1.89
1936 3014 1.666209 CTTTCGATGGGGCGCCAAAT 61.666 55.000 30.85 21.04 0.00 2.32
2043 3254 6.043243 AGTCTCCATTCAGTGAACCTTTTCTA 59.957 38.462 7.96 0.00 32.36 2.10
2044 3255 5.066593 GTCTCCATTCAGTGAACCTTTTCT 58.933 41.667 7.96 0.00 32.36 2.52
2045 3256 5.066593 AGTCTCCATTCAGTGAACCTTTTC 58.933 41.667 7.96 0.00 0.00 2.29
2046 3257 5.053978 AGTCTCCATTCAGTGAACCTTTT 57.946 39.130 7.96 0.00 0.00 2.27
2047 3258 4.713792 AGTCTCCATTCAGTGAACCTTT 57.286 40.909 7.96 0.00 0.00 3.11
2048 3259 4.392940 CAAGTCTCCATTCAGTGAACCTT 58.607 43.478 7.96 1.47 0.00 3.50
2049 3260 3.808618 GCAAGTCTCCATTCAGTGAACCT 60.809 47.826 7.96 0.00 0.00 3.50
2050 3261 2.485814 GCAAGTCTCCATTCAGTGAACC 59.514 50.000 7.96 0.00 0.00 3.62
2054 3268 2.483106 CACAGCAAGTCTCCATTCAGTG 59.517 50.000 0.00 0.00 0.00 3.66
2094 3311 1.559682 GAGCAGGAACCCTCATTGGTA 59.440 52.381 0.00 0.00 37.76 3.25
2127 3344 3.041508 AGAAGGGAAACGCTTACTGAC 57.958 47.619 0.00 0.00 36.78 3.51
2276 3496 5.063312 CGTTTTTGTGCCTGTTTCTTTTCAT 59.937 36.000 0.00 0.00 0.00 2.57
2308 3528 3.790416 ATGGCACTTGTGGGCGTGT 62.790 57.895 2.81 0.00 33.78 4.49
2323 3543 1.135046 GCGATGAGTGATGACGATGG 58.865 55.000 0.00 0.00 0.00 3.51
2357 3577 3.314553 GTCGATGGTGAAGAAGTCGAAA 58.685 45.455 0.00 0.00 42.13 3.46
2455 3675 0.932123 CGATGGATCTGCACGTCTCG 60.932 60.000 0.00 0.00 0.00 4.04
2514 3734 2.673368 CTCAGGACTTGCCGACATTTAC 59.327 50.000 0.00 0.00 43.43 2.01
2532 3753 7.838079 TTTGGAAAATGAGAATTCTTCCTCA 57.162 32.000 19.26 10.21 42.78 3.86
2567 3788 3.312421 TCTGGTTTTCGAGTCTTTGCAAG 59.688 43.478 0.00 0.00 0.00 4.01
2645 3866 0.323629 ATACACCCGGACAACTGGTG 59.676 55.000 0.73 2.56 40.75 4.17
2652 3873 3.992943 AGAAATTCATACACCCGGACA 57.007 42.857 0.73 0.00 0.00 4.02
2653 3874 5.638596 AAAAGAAATTCATACACCCGGAC 57.361 39.130 0.73 0.00 0.00 4.79
2654 3875 5.184287 GGAAAAAGAAATTCATACACCCGGA 59.816 40.000 0.73 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.