AutoCloner

Multiple sequence alignment - TraesCS4B01G153600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G153600	chr4B	100.000	2537	0	0	1	2537	265288839	265291375	0.000000e+00	4686
1	TraesCS4B01G153600	chr4B	97.458	118	3	0	2420	2537	496244187	496244304	4.280000e-48	202
2	TraesCS4B01G153600	chr2A	87.095	2131	214	40	1	2088	614382652	614380540	0.000000e+00	2355
3	TraesCS4B01G153600	chr2A	89.262	149	10	5	2390	2537	389043695	389043838	5.580000e-42	182
4	TraesCS4B01G153600	chr5D	90.426	1786	142	22	1	1773	63846587	63848356	0.000000e+00	2324
5	TraesCS4B01G153600	chr5D	90.076	1058	96	7	760	1809	362600531	362599475	0.000000e+00	1363
6	TraesCS4B01G153600	chr5D	89.268	410	29	6	1764	2162	63856928	63857333	1.360000e-137	499
7	TraesCS4B01G153600	chr5D	86.057	459	48	12	1	444	217426470	217426927	1.770000e-131	479
8	TraesCS4B01G153600	chr5D	90.226	266	21	5	2159	2424	63857367	63857627	2.420000e-90	342
9	TraesCS4B01G153600	chr5D	84.758	269	31	8	2164	2424	217429216	217429482	6.960000e-66	261
10	TraesCS4B01G153600	chr5D	85.887	248	25	9	1918	2158	217428930	217429174	3.240000e-64	255
11	TraesCS4B01G153600	chr5D	86.076	237	27	6	1927	2158	362599147	362598912	1.510000e-62	250
12	TraesCS4B01G153600	chr5D	86.364	220	23	7	2164	2377	362598870	362598652	1.520000e-57	233
13	TraesCS4B01G153600	chr5D	85.204	196	23	5	1898	2087	362599476	362599281	1.990000e-46	196
14	TraesCS4B01G153600	chr5D	84.746	177	15	4	557	722	362600703	362600528	1.560000e-37	167
15	TraesCS4B01G153600	chr5D	84.211	152	13	3	581	722	217427552	217427702	1.220000e-28	137
16	TraesCS4B01G153600	chr5D	84.138	145	12	4	443	584	217427038	217427174	2.050000e-26	130
17	TraesCS4B01G153600	chr1B	84.474	1636	183	39	1	1595	344325444	344323839	0.000000e+00	1548
18	TraesCS4B01G153600	chr1B	81.667	180	15	15	557	722	677507969	677507794	1.580000e-27	134
19	TraesCS4B01G153600	chr4D	89.565	1150	113	7	882	2027	329726766	329727912	0.000000e+00	1452
20	TraesCS4B01G153600	chr4D	91.040	904	59	12	1	887	329698811	329699709	0.000000e+00	1201
21	TraesCS4B01G153600	chr2B	86.066	1342	126	24	485	1809	406502343	406501046	0.000000e+00	1386
22	TraesCS4B01G153600	chr2B	83.841	328	35	9	226	535	640044423	640044096	1.910000e-76	296
23	TraesCS4B01G153600	chr2B	97.479	119	3	0	2419	2537	374573300	374573418	1.190000e-48	204
24	TraesCS4B01G153600	chr2B	95.935	123	4	1	2415	2537	484645099	484645220	5.540000e-47	198
25	TraesCS4B01G153600	chr2B	82.564	195	28	5	1898	2087	640031310	640031117	1.560000e-37	167
26	TraesCS4B01G153600	chr2B	84.496	129	15	3	2164	2288	530253801	530253928	3.430000e-24	122
27	TraesCS4B01G153600	chr1D	90.377	1060	89	9	760	1809	361788548	361789604	0.000000e+00	1380
28	TraesCS4B01G153600	chr1D	84.181	708	81	21	1	680	361786987	361787691	0.000000e+00	658
29	TraesCS4B01G153600	chr1D	83.046	755	80	27	1	722	367651906	367652645	2.130000e-180	641
30	TraesCS4B01G153600	chr1D	85.593	236	29	5	1927	2158	367654017	367654251	2.520000e-60	243
31	TraesCS4B01G153600	chr1D	85.650	223	22	9	2164	2377	367654293	367654514	2.540000e-55	226
32	TraesCS4B01G153600	chr1D	93.939	132	4	4	2409	2537	363771516	363771386	1.990000e-46	196
33	TraesCS4B01G153600	chr1D	84.375	192	25	5	1898	2084	367653689	367653880	1.550000e-42	183
34	TraesCS4B01G153600	chr1D	82.990	194	25	6	1898	2084	361789603	361789795	4.340000e-38	169
35	TraesCS4B01G153600	chr7A	89.070	1107	102	13	996	2090	661036421	661037520	0.000000e+00	1356
36	TraesCS4B01G153600	chr6A	85.591	1277	137	30	557	1809	436870355	436871608	0.000000e+00	1295
37	TraesCS4B01G153600	chr4A	88.920	1056	100	9	760	1809	207498252	207499296	0.000000e+00	1286
38	TraesCS4B01G153600	chr4A	87.051	641	63	14	9	629	207397126	207397766	0.000000e+00	706
39	TraesCS4B01G153600	chr2D	88.555	1031	107	8	787	1809	151456083	151457110	0.000000e+00	1240
40	TraesCS4B01G153600	chr2D	88.188	999	106	9	817	1808	474731482	474730489	0.000000e+00	1181
41	TraesCS4B01G153600	chr2D	83.333	192	26	5	1898	2084	151457109	151457299	3.360000e-39	172
42	TraesCS4B01G153600	chr3B	87.670	1030	113	8	789	1809	603612795	603613819	0.000000e+00	1186
43	TraesCS4B01G153600	chr3B	84.418	937	103	29	164	1079	527018145	527019059	0.000000e+00	881
44	TraesCS4B01G153600	chr3B	84.733	131	14	4	2164	2289	603614422	603614551	2.650000e-25	126
45	TraesCS4B01G153600	chr5B	83.349	1033	126	22	790	1808	679848670	679847670	0.000000e+00	913
46	TraesCS4B01G153600	chr5B	95.200	125	5	1	2414	2537	444850655	444850531	1.990000e-46	196
47	TraesCS4B01G153600	chr5B	82.946	129	17	3	2164	2288	57448793	57448920	7.420000e-21	111
48	TraesCS4B01G153600	chr1A	92.593	135	5	4	2405	2537	395167230	395167099	3.330000e-44	189
49	TraesCS4B01G153600	chr3A	88.889	153	10	6	2388	2537	150112838	150112986	5.580000e-42	182
50	TraesCS4B01G153600	chr6D	90.977	133	8	4	2408	2537	113383336	113383205	2.590000e-40	176
51	TraesCS4B01G153600	chr7D	85.606	132	12	5	2164	2289	84186392	84186522	5.690000e-27	132

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G153600	chr4B	265288839	265291375	2536	False	4686.000000	4686	100.000000	1	2537	1	chr4B.!!$F1	2536
1	TraesCS4B01G153600	chr2A	614380540	614382652	2112	True	2355.000000	2355	87.095000	1	2088	1	chr2A.!!$R1	2087
2	TraesCS4B01G153600	chr5D	63846587	63848356	1769	False	2324.000000	2324	90.426000	1	1773	1	chr5D.!!$F1	1772
3	TraesCS4B01G153600	chr5D	362598652	362600703	2051	True	441.800000	1363	86.493200	557	2377	5	chr5D.!!$R1	1820
4	TraesCS4B01G153600	chr5D	63856928	63857627	699	False	420.500000	499	89.747000	1764	2424	2	chr5D.!!$F2	660
5	TraesCS4B01G153600	chr5D	217426470	217429482	3012	False	252.400000	479	85.010200	1	2424	5	chr5D.!!$F3	2423
6	TraesCS4B01G153600	chr1B	344323839	344325444	1605	True	1548.000000	1548	84.474000	1	1595	1	chr1B.!!$R1	1594
7	TraesCS4B01G153600	chr4D	329726766	329727912	1146	False	1452.000000	1452	89.565000	882	2027	1	chr4D.!!$F2	1145
8	TraesCS4B01G153600	chr4D	329698811	329699709	898	False	1201.000000	1201	91.040000	1	887	1	chr4D.!!$F1	886
9	TraesCS4B01G153600	chr2B	406501046	406502343	1297	True	1386.000000	1386	86.066000	485	1809	1	chr2B.!!$R1	1324
10	TraesCS4B01G153600	chr1D	361786987	361789795	2808	False	735.666667	1380	85.849333	1	2084	3	chr1D.!!$F1	2083
11	TraesCS4B01G153600	chr1D	367651906	367654514	2608	False	323.250000	641	84.666000	1	2377	4	chr1D.!!$F2	2376
12	TraesCS4B01G153600	chr7A	661036421	661037520	1099	False	1356.000000	1356	89.070000	996	2090	1	chr7A.!!$F1	1094
13	TraesCS4B01G153600	chr6A	436870355	436871608	1253	False	1295.000000	1295	85.591000	557	1809	1	chr6A.!!$F1	1252
14	TraesCS4B01G153600	chr4A	207498252	207499296	1044	False	1286.000000	1286	88.920000	760	1809	1	chr4A.!!$F2	1049
15	TraesCS4B01G153600	chr4A	207397126	207397766	640	False	706.000000	706	87.051000	9	629	1	chr4A.!!$F1	620
16	TraesCS4B01G153600	chr2D	474730489	474731482	993	True	1181.000000	1181	88.188000	817	1808	1	chr2D.!!$R1	991
17	TraesCS4B01G153600	chr2D	151456083	151457299	1216	False	706.000000	1240	85.944000	787	2084	2	chr2D.!!$F1	1297
18	TraesCS4B01G153600	chr3B	527018145	527019059	914	False	881.000000	881	84.418000	164	1079	1	chr3B.!!$F1	915
19	TraesCS4B01G153600	chr3B	603612795	603614551	1756	False	656.000000	1186	86.201500	789	2289	2	chr3B.!!$F2	1500
20	TraesCS4B01G153600	chr5B	679847670	679848670	1000	True	913.000000	913	83.349000	790	1808	1	chr5B.!!$R2	1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
643	1161	0.104671	ACACTTGCACCCAAACATGC	59.895	50.0	0.0	0.0	42.4	4.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2180	4081	0.381801	CACAAAACGCTTCTGCCTGT	59.618	50.0	0.0	0.0	35.36	4.0	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
162	166	2.729882	GTGTTCGTAGTCGCATTGTTCT	59.270	45.455	0.00	0.00	36.96	3.01
187	194	1.485480	GGTGAGGAAGTAGGGGTAAGC	59.515	57.143	0.00	0.00	0.00	3.09
399	423	5.473039	CGAAAGGAAAAGGCAAATCATCTT	58.527	37.500	0.00	0.00	0.00	2.40
537	668	4.324267	AGTATACACTTGGCAGTTGTTCC	58.676	43.478	5.50	0.00	0.00	3.62
541	673	2.427095	ACACTTGGCAGTTGTTCCTTTC	59.573	45.455	0.00	0.00	0.00	2.62
610	1127	7.763985	CCTACTTTGTCAAATTTGAAAGTTGGT	59.236	33.333	32.04	23.47	39.75	3.67
643	1161	0.104671	ACACTTGCACCCAAACATGC	59.895	50.000	0.00	0.00	42.40	4.06
959	2310	2.357952	GGAGGTTTGTGAAGGTGAACAC	59.642	50.000	0.00	0.00	37.51	3.32
960	2311	3.013921	GAGGTTTGTGAAGGTGAACACA	58.986	45.455	7.25	0.00	43.73	3.72
1008	2359	5.537300	TCCTGTATGAGAAGATGTTAGGC	57.463	43.478	0.00	0.00	0.00	3.93
1015	2366	1.555075	AGAAGATGTTAGGCGGCTTGA	59.445	47.619	19.76	3.28	0.00	3.02
1079	2430	0.957395	GTCCAGTCGTACGACCCAGA	60.957	60.000	37.43	28.95	45.59	3.86
1280	2631	2.283617	CCGAATTCAGCAAGACGATGAG	59.716	50.000	6.22	0.00	42.01	2.90
1334	2686	1.079405	CTGGCTGGCTTGCAATTGG	60.079	57.895	7.72	0.00	34.04	3.16
1425	2777	4.696479	ACCTGATGTTCTGTTGAAGAGT	57.304	40.909	0.00	0.00	35.91	3.24
1445	2797	7.986085	AGAGTAATGTGAGCTTATTTGTTGT	57.014	32.000	0.00	0.00	0.00	3.32
1572	2927	9.825972	CTGTTAAACATAGTTTTCTACATGGTG	57.174	33.333	0.00	0.00	35.02	4.17
1617	2982	7.524698	GCTCATATGTTGTTTTCCCCTTTTGTA	60.525	37.037	1.90	0.00	0.00	2.41
1644	3016	1.602323	GGGGATGGTGCGTGAACAA	60.602	57.895	0.00	0.00	0.00	2.83
1648	3020	2.490115	GGGATGGTGCGTGAACAAATTA	59.510	45.455	0.00	0.00	0.00	1.40
1657	3029	8.297426	TGGTGCGTGAACAAATTATTTACATTA	58.703	29.630	0.00	0.00	0.00	1.90
1824	3196	7.094634	TGCTCAAAGTCAAATGATACCTTCTTC	60.095	37.037	0.00	0.00	0.00	2.87
1962	3490	6.346919	GCACAAGTCTATATTGATAGTTGGCG	60.347	42.308	9.78	0.00	37.03	5.69
1985	3513	4.872691	GCACAGACTTATGATAGTTGCACT	59.127	41.667	0.00	0.00	32.36	4.40
2162	4063	9.519905	CTAAATGATTTTTCTTTTTGTGCATCG	57.480	29.630	0.00	0.00	0.00	3.84
2168	4069	3.988379	TCTTTTTGTGCATCGCTCTTT	57.012	38.095	0.00	0.00	0.00	2.52
2172	4073	5.412594	TCTTTTTGTGCATCGCTCTTTAGAT	59.587	36.000	0.00	0.00	0.00	1.98
2180	4081	6.018751	GTGCATCGCTCTTTAGATGATTGTTA	60.019	38.462	9.32	0.00	45.08	2.41
2193	4094	2.076863	GATTGTTACAGGCAGAAGCGT	58.923	47.619	0.00	0.00	43.41	5.07
2395	4309	3.815962	TGTCGGTTGCAACATAGCTTTTA	59.184	39.130	29.55	4.41	34.99	1.52
2405	4319	6.526325	TGCAACATAGCTTTTATTTACTTGCG	59.474	34.615	0.00	0.00	34.38	4.85
2439	4353	6.079712	ACTTTAGTGAAGGAAATATGCCCT	57.920	37.500	0.00	0.00	39.79	5.19
2440	4354	7.208064	ACTTTAGTGAAGGAAATATGCCCTA	57.792	36.000	0.00	0.00	39.79	3.53
2441	4355	7.283329	ACTTTAGTGAAGGAAATATGCCCTAG	58.717	38.462	0.00	0.00	39.79	3.02
2442	4356	7.127339	ACTTTAGTGAAGGAAATATGCCCTAGA	59.873	37.037	0.00	0.00	39.79	2.43
2443	4357	5.559148	AGTGAAGGAAATATGCCCTAGAG	57.441	43.478	0.00	0.00	31.36	2.43
2444	4358	5.219739	AGTGAAGGAAATATGCCCTAGAGA	58.780	41.667	0.00	0.00	31.36	3.10
2445	4359	5.071115	AGTGAAGGAAATATGCCCTAGAGAC	59.929	44.000	0.00	0.00	31.36	3.36
2446	4360	4.968719	TGAAGGAAATATGCCCTAGAGACA	59.031	41.667	0.00	0.00	31.36	3.41
2447	4361	5.428457	TGAAGGAAATATGCCCTAGAGACAA	59.572	40.000	0.00	0.00	31.36	3.18
2448	4362	6.101734	TGAAGGAAATATGCCCTAGAGACAAT	59.898	38.462	0.00	0.00	31.36	2.71
2449	4363	7.292356	TGAAGGAAATATGCCCTAGAGACAATA	59.708	37.037	0.00	0.00	31.36	1.90
2450	4364	7.633018	AGGAAATATGCCCTAGAGACAATAA	57.367	36.000	0.00	0.00	0.00	1.40
2451	4365	8.224620	AGGAAATATGCCCTAGAGACAATAAT	57.775	34.615	0.00	0.00	0.00	1.28
2452	4366	9.338968	AGGAAATATGCCCTAGAGACAATAATA	57.661	33.333	0.00	0.00	0.00	0.98
2453	4367	9.959721	GGAAATATGCCCTAGAGACAATAATAA	57.040	33.333	0.00	0.00	0.00	1.40
2523	4437	9.725019	ATTCATGCTAGAATTGTATTAATCGGA	57.275	29.630	0.00	0.00	34.70	4.55
2524	4438	9.554395	TTCATGCTAGAATTGTATTAATCGGAA	57.446	29.630	0.00	0.00	0.00	4.30
2525	4439	9.554395	TCATGCTAGAATTGTATTAATCGGAAA	57.446	29.630	0.00	0.00	0.00	3.13
2526	4440	9.599322	CATGCTAGAATTGTATTAATCGGAAAC	57.401	33.333	0.00	0.00	0.00	2.78
2527	4441	8.958119	TGCTAGAATTGTATTAATCGGAAACT	57.042	30.769	0.00	0.00	0.00	2.66
2528	4442	9.391006	TGCTAGAATTGTATTAATCGGAAACTT	57.609	29.630	0.00	0.00	0.00	2.66
2529	4443	9.651718	GCTAGAATTGTATTAATCGGAAACTTG	57.348	33.333	0.00	0.00	0.00	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	75	1.649664	CTCTGCATGGGTCGAAAGAG	58.350	55.000	0.00	0.00	43.49	2.85
140	144	2.143008	ACAATGCGACTACGAACACA	57.857	45.000	0.00	0.00	42.66	3.72
162	166	2.196595	CCCCTACTTCCTCACCATCAA	58.803	52.381	0.00	0.00	0.00	2.57
187	194	7.078228	AGAAATGTTAAAGTCTGCGCTAAAAG	58.922	34.615	9.73	0.00	0.00	2.27
457	528	4.897140	TGGTACCAACATACTGTACAACC	58.103	43.478	13.60	0.00	37.24	3.77
489	560	2.364632	TGTGCAACACTAAACAGCAGT	58.635	42.857	0.00	0.00	45.67	4.40
537	668	8.128582	TCTTAAAACAGTTATGCACACAGAAAG	58.871	33.333	0.00	0.00	0.00	2.62
541	673	8.935844	TCTATCTTAAAACAGTTATGCACACAG	58.064	33.333	0.00	0.00	0.00	3.66
610	1127	2.621055	GCAAGTGTGTGTTGAATGGGTA	59.379	45.455	0.00	0.00	0.00	3.69
674	2004	9.283768	CTATTATCCCTTATTGCATGTACACAA	57.716	33.333	0.00	0.00	0.00	3.33
736	2076	2.040359	GGAGGGGGAGGAGAAGGG	60.040	72.222	0.00	0.00	0.00	3.95
781	2126	7.049754	ACATATGTCTGCAACTGATCATACAA	58.950	34.615	1.41	0.00	0.00	2.41
898	2249	0.666274	CCAGCTTGTGAACGTCGCTA	60.666	55.000	0.00	0.00	0.00	4.26
959	2310	1.679139	TTGAACAGGTGCCAGTTCTG	58.321	50.000	21.46	1.41	41.19	3.02
960	2311	2.301346	CTTTGAACAGGTGCCAGTTCT	58.699	47.619	21.46	0.00	41.19	3.01
1015	2366	3.000727	GCAGTGTGTCGGCTAAGTTTAT	58.999	45.455	0.00	0.00	34.56	1.40
1079	2430	4.469657	TGGAAATACCAAAGCTGAACTGT	58.530	39.130	0.00	0.00	46.75	3.55
1280	2631	4.207891	TCAGTTGTTCCCTTCATAGCTC	57.792	45.455	0.00	0.00	0.00	4.09
1334	2686	5.515797	AGGAGCTAAAAAGGTGTTGAAAC	57.484	39.130	0.00	0.00	0.00	2.78
1425	2777	7.083858	GCTCAACAACAAATAAGCTCACATTA	58.916	34.615	0.00	0.00	0.00	1.90
1445	2797	5.229423	GGAATGCTTTGTTTATGTGCTCAA	58.771	37.500	0.00	0.00	0.00	3.02
1552	2904	6.003950	AGCACACCATGTAGAAAACTATGTT	58.996	36.000	0.00	0.00	0.00	2.71
1570	2925	6.351321	GAGCACATTGGTGATAAAAGCACAC	61.351	44.000	0.00	0.00	45.14	3.82
1572	2927	4.168760	GAGCACATTGGTGATAAAAGCAC	58.831	43.478	0.00	0.00	45.14	4.40
1617	2982	1.560505	GCACCATCCCCAAAAGACAT	58.439	50.000	0.00	0.00	0.00	3.06
1644	3016	9.748708	ACATCAAGCGCATTAATGTAAATAATT	57.251	25.926	16.61	0.97	0.00	1.40
1648	3020	7.257003	TCAACATCAAGCGCATTAATGTAAAT	58.743	30.769	16.61	0.00	30.71	1.40
1657	3029	2.871133	CACATCAACATCAAGCGCATT	58.129	42.857	11.47	0.00	0.00	3.56
1925	3453	4.682778	AGACTTGTGCAACTACCTACAA	57.317	40.909	0.00	0.00	38.04	2.41
1962	3490	5.149054	GTGCAACTATCATAAGTCTGTGC	57.851	43.478	0.00	0.00	33.37	4.57
1985	3513	9.624697	GTAACAGAAAATATGAAACAAGCATGA	57.375	29.630	0.00	0.00	0.00	3.07
2162	4063	5.586243	TGCCTGTAACAATCATCTAAAGAGC	59.414	40.000	0.00	0.00	0.00	4.09
2168	4069	5.118990	GCTTCTGCCTGTAACAATCATCTA	58.881	41.667	0.00	0.00	0.00	1.98
2172	4073	2.076100	CGCTTCTGCCTGTAACAATCA	58.924	47.619	0.00	0.00	35.36	2.57
2180	4081	0.381801	CACAAAACGCTTCTGCCTGT	59.618	50.000	0.00	0.00	35.36	4.00
2193	4094	1.135333	GGAACCTTTGACGCCACAAAA	59.865	47.619	0.00	0.00	38.90	2.44
2320	4229	6.145338	TGGGTGCGAAAAGTAACAAAAATA	57.855	33.333	0.00	0.00	0.00	1.40
2321	4230	5.012328	TGGGTGCGAAAAGTAACAAAAAT	57.988	34.783	0.00	0.00	0.00	1.82
2322	4231	4.451629	TGGGTGCGAAAAGTAACAAAAA	57.548	36.364	0.00	0.00	0.00	1.94
2377	4291	8.647226	CAAGTAAATAAAAGCTATGTTGCAACC	58.353	33.333	26.14	11.07	34.99	3.77
2395	4309	4.277423	AGTGTAAGTTTGGCGCAAGTAAAT	59.723	37.500	10.83	0.00	41.68	1.40
2405	4319	5.529800	TCCTTCACTAAAGTGTAAGTTTGGC	59.470	40.000	9.81	0.00	40.92	4.52
2424	4338	5.552870	TGTCTCTAGGGCATATTTCCTTC	57.447	43.478	0.00	0.00	34.75	3.46
2425	4339	5.975988	TTGTCTCTAGGGCATATTTCCTT	57.024	39.130	0.00	0.00	34.75	3.36
2426	4340	7.633018	TTATTGTCTCTAGGGCATATTTCCT	57.367	36.000	0.00	0.00	37.18	3.36
2427	4341	9.959721	TTATTATTGTCTCTAGGGCATATTTCC	57.040	33.333	0.00	0.00	0.00	3.13
2497	4411	9.725019	TCCGATTAATACAATTCTAGCATGAAT	57.275	29.630	0.00	0.00	38.19	2.57
2498	4412	9.554395	TTCCGATTAATACAATTCTAGCATGAA	57.446	29.630	0.00	0.00	0.00	2.57
2499	4413	9.554395	TTTCCGATTAATACAATTCTAGCATGA	57.446	29.630	0.00	0.00	0.00	3.07
2500	4414	9.599322	GTTTCCGATTAATACAATTCTAGCATG	57.401	33.333	0.00	0.00	0.00	4.06
2501	4415	9.561069	AGTTTCCGATTAATACAATTCTAGCAT	57.439	29.630	0.00	0.00	0.00	3.79
2502	4416	8.958119	AGTTTCCGATTAATACAATTCTAGCA	57.042	30.769	0.00	0.00	0.00	3.49
2503	4417	9.651718	CAAGTTTCCGATTAATACAATTCTAGC	57.348	33.333	0.00	0.00	0.00	3.42

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.