Multiple sequence alignment - TraesCS4B01G152500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G152500 chr4B 100.000 4038 0 0 1 4038 252982192 252978155 0.000000e+00 7457.0
1 TraesCS4B01G152500 chr4B 100.000 1344 0 0 4405 5748 252977788 252976445 0.000000e+00 2483.0
2 TraesCS4B01G152500 chr4B 89.486 428 37 8 1622 2048 11724506 11724926 8.480000e-148 534.0
3 TraesCS4B01G152500 chr4B 79.372 446 66 15 2214 2636 300802222 300802664 2.030000e-74 291.0
4 TraesCS4B01G152500 chr4B 92.593 54 2 2 1181 1233 252980959 252980907 6.180000e-10 76.8
5 TraesCS4B01G152500 chr4B 92.593 54 2 2 1234 1286 252981012 252980960 6.180000e-10 76.8
6 TraesCS4B01G152500 chr4D 94.400 1607 42 22 1316 2886 244612694 244611100 0.000000e+00 2425.0
7 TraesCS4B01G152500 chr4D 94.956 1368 39 12 4405 5748 244609660 244608299 0.000000e+00 2117.0
8 TraesCS4B01G152500 chr4D 98.043 1073 19 2 2966 4038 244611103 244610033 0.000000e+00 1864.0
9 TraesCS4B01G152500 chr4D 98.250 857 14 1 462 1317 244613677 244612821 0.000000e+00 1498.0
10 TraesCS4B01G152500 chr4D 91.059 425 33 4 1625 2048 430818076 430817656 2.320000e-158 569.0
11 TraesCS4B01G152500 chr4D 79.596 446 65 15 2214 2636 242939520 242939962 4.350000e-76 296.0
12 TraesCS4B01G152500 chr4D 92.593 54 2 2 1234 1286 244612957 244612905 6.180000e-10 76.8
13 TraesCS4B01G152500 chr4A 96.494 1141 36 3 4405 5545 389989048 389987912 0.000000e+00 1882.0
14 TraesCS4B01G152500 chr4A 96.930 1075 25 6 2966 4038 389990185 389989117 0.000000e+00 1796.0
15 TraesCS4B01G152500 chr4A 97.226 829 20 3 2060 2886 389991009 389990182 0.000000e+00 1400.0
16 TraesCS4B01G152500 chr4A 93.554 574 14 5 487 1057 389992203 389991650 0.000000e+00 833.0
17 TraesCS4B01G152500 chr4A 93.178 557 29 2 1043 1590 389991611 389991055 0.000000e+00 809.0
18 TraesCS4B01G152500 chr4A 88.739 444 37 8 1 440 559507571 559508005 1.100000e-146 531.0
19 TraesCS4B01G152500 chr4A 78.876 445 68 15 2217 2639 237096597 237096157 1.580000e-70 278.0
20 TraesCS4B01G152500 chr4A 80.488 287 44 9 151 436 570454979 570454704 5.840000e-50 209.0
21 TraesCS4B01G152500 chr4A 92.593 54 2 2 1234 1286 389991473 389991421 6.180000e-10 76.8
22 TraesCS4B01G152500 chr3D 87.143 700 66 15 2061 2743 395032084 395031392 0.000000e+00 773.0
23 TraesCS4B01G152500 chr3D 91.315 426 32 4 1625 2049 372625437 372625016 1.390000e-160 577.0
24 TraesCS4B01G152500 chr3D 95.833 96 4 0 2883 2978 30979381 30979286 7.710000e-34 156.0
25 TraesCS4B01G152500 chr3D 100.000 28 0 0 5550 5577 29696689 29696716 1.000000e-02 52.8
26 TraesCS4B01G152500 chr3A 86.299 708 73 14 2053 2743 514452976 514452276 0.000000e+00 749.0
27 TraesCS4B01G152500 chr3A 87.952 415 30 10 5 417 647684213 647684609 6.740000e-129 472.0
28 TraesCS4B01G152500 chr3A 88.013 317 25 7 124 436 186745213 186745520 4.230000e-96 363.0
29 TraesCS4B01G152500 chr3A 95.699 93 3 1 2877 2968 727583995 727583903 1.290000e-31 148.0
30 TraesCS4B01G152500 chr3A 92.105 38 2 1 5540 5576 15804145 15804182 1.000000e-02 52.8
31 TraesCS4B01G152500 chr6D 93.197 441 20 3 1 440 387604188 387604619 1.750000e-179 640.0
32 TraesCS4B01G152500 chr6D 90.261 421 32 5 1626 2046 63133600 63134011 5.070000e-150 542.0
33 TraesCS4B01G152500 chr1D 90.531 433 32 9 1622 2049 460919097 460919525 1.080000e-156 564.0
34 TraesCS4B01G152500 chr1D 89.671 426 35 8 1626 2049 204886549 204886967 8.480000e-148 534.0
35 TraesCS4B01G152500 chr1D 91.429 105 7 2 2883 2987 85191513 85191615 6.000000e-30 143.0
36 TraesCS4B01G152500 chr1D 100.000 28 0 0 5549 5576 124343589 124343562 1.000000e-02 52.8
37 TraesCS4B01G152500 chr1D 100.000 28 0 0 5549 5576 228806342 228806369 1.000000e-02 52.8
38 TraesCS4B01G152500 chr2D 89.977 429 39 4 1621 2047 547148183 547148609 8.420000e-153 551.0
39 TraesCS4B01G152500 chr2D 76.141 679 124 22 2212 2853 77381823 77381146 7.180000e-84 322.0
40 TraesCS4B01G152500 chr3B 88.453 433 45 5 1619 2049 176923943 176924372 8.540000e-143 518.0
41 TraesCS4B01G152500 chr7B 83.389 301 38 5 152 450 619432112 619431822 9.490000e-68 268.0
42 TraesCS4B01G152500 chr7B 81.100 291 43 9 151 440 444462896 444462617 7.500000e-54 222.0
43 TraesCS4B01G152500 chr7B 87.395 119 14 1 2878 2996 389007183 389007066 1.000000e-27 135.0
44 TraesCS4B01G152500 chr2B 84.706 255 29 3 184 436 773101335 773101089 4.450000e-61 246.0
45 TraesCS4B01G152500 chr2B 96.809 94 3 0 2882 2975 49649133 49649226 2.140000e-34 158.0
46 TraesCS4B01G152500 chr2B 92.157 102 6 2 2868 2967 440212043 440212144 6.000000e-30 143.0
47 TraesCS4B01G152500 chr2B 100.000 28 0 0 5549 5576 487234058 487234085 1.000000e-02 52.8
48 TraesCS4B01G152500 chr1B 80.836 287 43 5 151 436 12563655 12563380 1.250000e-51 215.0
49 TraesCS4B01G152500 chr7D 95.876 97 4 0 2883 2979 4013602 4013506 2.140000e-34 158.0
50 TraesCS4B01G152500 chr5B 95.833 96 2 2 2874 2969 559465841 559465934 2.770000e-33 154.0
51 TraesCS4B01G152500 chr5B 90.000 110 9 1 2869 2978 183255748 183255855 2.160000e-29 141.0
52 TraesCS4B01G152500 chr5B 100.000 28 0 0 5549 5576 275056705 275056732 1.000000e-02 52.8
53 TraesCS4B01G152500 chr6A 90.517 116 8 3 2883 2998 172113266 172113154 3.590000e-32 150.0
54 TraesCS4B01G152500 chr2A 93.878 98 6 0 2879 2976 750532480 750532383 1.290000e-31 148.0
55 TraesCS4B01G152500 chr2A 91.346 104 7 2 2868 2969 407739283 407739180 2.160000e-29 141.0
56 TraesCS4B01G152500 chr2A 94.505 91 5 0 2883 2973 686654617 686654527 2.160000e-29 141.0
57 TraesCS4B01G152500 chr2A 96.774 31 1 0 5549 5579 692642023 692641993 1.000000e-02 52.8
58 TraesCS4B01G152500 chr7A 93.000 100 4 2 2870 2967 208050260 208050358 6.000000e-30 143.0
59 TraesCS4B01G152500 chr7A 93.182 44 3 0 397 440 725802644 725802687 1.340000e-06 65.8
60 TraesCS4B01G152500 chr6B 88.785 107 10 2 2861 2967 42774555 42774659 4.670000e-26 130.0
61 TraesCS4B01G152500 chr6B 100.000 28 0 0 5582 5609 43070921 43070948 1.000000e-02 52.8
62 TraesCS4B01G152500 chr1A 100.000 28 0 0 5549 5576 296923083 296923110 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G152500 chr4B 252976445 252982192 5747 True 2523.40 7457 96.296500 1 5748 4 chr4B.!!$R1 5747
1 TraesCS4B01G152500 chr4D 244608299 244613677 5378 True 1596.16 2425 95.648400 462 5748 5 chr4D.!!$R2 5286
2 TraesCS4B01G152500 chr4A 389987912 389992203 4291 True 1132.80 1882 94.995833 487 5545 6 chr4A.!!$R3 5058
3 TraesCS4B01G152500 chr3D 395031392 395032084 692 True 773.00 773 87.143000 2061 2743 1 chr3D.!!$R3 682
4 TraesCS4B01G152500 chr3A 514452276 514452976 700 True 749.00 749 86.299000 2053 2743 1 chr3A.!!$R1 690
5 TraesCS4B01G152500 chr2D 77381146 77381823 677 True 322.00 322 76.141000 2212 2853 1 chr2D.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.107017 GTGCCCATGCCAGTATGTCT 60.107 55.000 0.00 0.0 36.33 3.41 F
1590 1784 0.328258 ACCGGCAACAAAGCTAGGAT 59.672 50.000 0.00 0.0 36.57 3.24 F
1860 2082 0.474466 CTATCCATCCTCCCAGGCCA 60.474 60.000 5.01 0.0 34.61 5.36 F
2893 3165 1.214673 TGCTACATCTACTCCCTCCGT 59.785 52.381 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2251 0.106149 AGAACGGTCGTTTGGCTCTT 59.894 50.000 10.15 0.0 38.6 2.85 R
3299 3571 2.140065 TGTCGACTTGTCTGCTTCAG 57.860 50.000 17.92 0.0 0.0 3.02 R
3594 3867 5.884232 TGAATAAGAGCAACAATGATGAGCT 59.116 36.000 0.00 0.0 41.6 4.09 R
4753 5033 2.744760 AGGAGCTGCTGAGTCTCAATA 58.255 47.619 7.07 0.0 0.0 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.738975 TCTCGTATCTGCTGGAACCG 59.261 55.000 0.00 0.00 0.00 4.44
21 22 0.738975 CTCGTATCTGCTGGAACCGA 59.261 55.000 0.00 0.00 0.00 4.69
22 23 0.738975 TCGTATCTGCTGGAACCGAG 59.261 55.000 0.00 0.00 0.00 4.63
23 24 0.872021 CGTATCTGCTGGAACCGAGC 60.872 60.000 0.00 0.00 36.95 5.03
24 25 0.872021 GTATCTGCTGGAACCGAGCG 60.872 60.000 0.00 0.00 39.47 5.03
25 26 1.320344 TATCTGCTGGAACCGAGCGT 61.320 55.000 0.00 0.00 39.47 5.07
26 27 2.842394 ATCTGCTGGAACCGAGCGTG 62.842 60.000 0.00 0.00 39.47 5.34
27 28 3.573772 CTGCTGGAACCGAGCGTGA 62.574 63.158 0.00 0.00 39.47 4.35
28 29 2.125512 GCTGGAACCGAGCGTGAT 60.126 61.111 0.00 0.00 0.00 3.06
29 30 2.167861 GCTGGAACCGAGCGTGATC 61.168 63.158 0.00 0.00 0.00 2.92
30 31 1.513158 CTGGAACCGAGCGTGATCT 59.487 57.895 0.00 0.00 0.00 2.75
31 32 0.108615 CTGGAACCGAGCGTGATCTT 60.109 55.000 0.00 0.00 0.00 2.40
32 33 0.108804 TGGAACCGAGCGTGATCTTC 60.109 55.000 0.00 0.00 0.00 2.87
33 34 0.806492 GGAACCGAGCGTGATCTTCC 60.806 60.000 0.00 0.00 0.00 3.46
34 35 0.173708 GAACCGAGCGTGATCTTCCT 59.826 55.000 0.00 0.00 0.00 3.36
35 36 1.404391 GAACCGAGCGTGATCTTCCTA 59.596 52.381 0.00 0.00 0.00 2.94
36 37 1.471119 ACCGAGCGTGATCTTCCTAA 58.529 50.000 0.00 0.00 0.00 2.69
37 38 2.032620 ACCGAGCGTGATCTTCCTAAT 58.967 47.619 0.00 0.00 0.00 1.73
38 39 3.220110 ACCGAGCGTGATCTTCCTAATA 58.780 45.455 0.00 0.00 0.00 0.98
39 40 3.827302 ACCGAGCGTGATCTTCCTAATAT 59.173 43.478 0.00 0.00 0.00 1.28
40 41 4.169508 CCGAGCGTGATCTTCCTAATATG 58.830 47.826 0.00 0.00 0.00 1.78
41 42 3.610242 CGAGCGTGATCTTCCTAATATGC 59.390 47.826 0.00 0.00 0.00 3.14
42 43 3.929610 GAGCGTGATCTTCCTAATATGCC 59.070 47.826 0.00 0.00 0.00 4.40
43 44 3.324846 AGCGTGATCTTCCTAATATGCCA 59.675 43.478 0.00 0.00 0.00 4.92
44 45 4.019860 AGCGTGATCTTCCTAATATGCCAT 60.020 41.667 0.00 0.00 0.00 4.40
45 46 5.187772 AGCGTGATCTTCCTAATATGCCATA 59.812 40.000 0.00 0.00 0.00 2.74
46 47 5.521735 GCGTGATCTTCCTAATATGCCATAG 59.478 44.000 0.00 0.00 0.00 2.23
47 48 6.628175 GCGTGATCTTCCTAATATGCCATAGA 60.628 42.308 0.00 0.00 0.00 1.98
48 49 7.495901 CGTGATCTTCCTAATATGCCATAGAT 58.504 38.462 0.00 0.00 0.00 1.98
49 50 7.984050 CGTGATCTTCCTAATATGCCATAGATT 59.016 37.037 0.00 0.00 0.00 2.40
50 51 9.323985 GTGATCTTCCTAATATGCCATAGATTC 57.676 37.037 0.00 0.00 0.00 2.52
51 52 9.050154 TGATCTTCCTAATATGCCATAGATTCA 57.950 33.333 0.00 0.00 0.00 2.57
52 53 9.545105 GATCTTCCTAATATGCCATAGATTCAG 57.455 37.037 0.00 0.00 0.00 3.02
53 54 7.855375 TCTTCCTAATATGCCATAGATTCAGG 58.145 38.462 0.00 0.00 0.00 3.86
54 55 6.566079 TCCTAATATGCCATAGATTCAGGG 57.434 41.667 0.00 0.00 0.00 4.45
55 56 6.032039 TCCTAATATGCCATAGATTCAGGGT 58.968 40.000 0.00 0.00 0.00 4.34
56 57 7.196187 TCCTAATATGCCATAGATTCAGGGTA 58.804 38.462 0.00 0.00 0.00 3.69
57 58 7.345653 TCCTAATATGCCATAGATTCAGGGTAG 59.654 40.741 0.00 0.00 0.00 3.18
58 59 6.959606 AATATGCCATAGATTCAGGGTAGT 57.040 37.500 0.00 0.00 0.00 2.73
59 60 4.630644 ATGCCATAGATTCAGGGTAGTG 57.369 45.455 0.00 0.00 0.00 2.74
60 61 3.384168 TGCCATAGATTCAGGGTAGTGT 58.616 45.455 0.00 0.00 0.00 3.55
61 62 3.134623 TGCCATAGATTCAGGGTAGTGTG 59.865 47.826 0.00 0.00 0.00 3.82
62 63 3.134804 GCCATAGATTCAGGGTAGTGTGT 59.865 47.826 0.00 0.00 0.00 3.72
63 64 4.697514 CCATAGATTCAGGGTAGTGTGTG 58.302 47.826 0.00 0.00 0.00 3.82
64 65 4.443457 CCATAGATTCAGGGTAGTGTGTGG 60.443 50.000 0.00 0.00 0.00 4.17
65 66 1.909302 AGATTCAGGGTAGTGTGTGGG 59.091 52.381 0.00 0.00 0.00 4.61
66 67 0.991920 ATTCAGGGTAGTGTGTGGGG 59.008 55.000 0.00 0.00 0.00 4.96
67 68 0.400815 TTCAGGGTAGTGTGTGGGGT 60.401 55.000 0.00 0.00 0.00 4.95
68 69 0.400815 TCAGGGTAGTGTGTGGGGTT 60.401 55.000 0.00 0.00 0.00 4.11
69 70 0.476771 CAGGGTAGTGTGTGGGGTTT 59.523 55.000 0.00 0.00 0.00 3.27
70 71 1.133606 CAGGGTAGTGTGTGGGGTTTT 60.134 52.381 0.00 0.00 0.00 2.43
71 72 1.144298 AGGGTAGTGTGTGGGGTTTTC 59.856 52.381 0.00 0.00 0.00 2.29
72 73 1.133730 GGGTAGTGTGTGGGGTTTTCA 60.134 52.381 0.00 0.00 0.00 2.69
73 74 2.657143 GGTAGTGTGTGGGGTTTTCAA 58.343 47.619 0.00 0.00 0.00 2.69
74 75 3.227614 GGTAGTGTGTGGGGTTTTCAAT 58.772 45.455 0.00 0.00 0.00 2.57
75 76 4.400120 GGTAGTGTGTGGGGTTTTCAATA 58.600 43.478 0.00 0.00 0.00 1.90
76 77 4.457949 GGTAGTGTGTGGGGTTTTCAATAG 59.542 45.833 0.00 0.00 0.00 1.73
77 78 4.447138 AGTGTGTGGGGTTTTCAATAGA 57.553 40.909 0.00 0.00 0.00 1.98
78 79 4.798882 AGTGTGTGGGGTTTTCAATAGAA 58.201 39.130 0.00 0.00 0.00 2.10
79 80 5.205056 AGTGTGTGGGGTTTTCAATAGAAA 58.795 37.500 0.00 0.00 41.78 2.52
80 81 5.301805 AGTGTGTGGGGTTTTCAATAGAAAG 59.698 40.000 0.00 0.00 44.03 2.62
81 82 5.068591 GTGTGTGGGGTTTTCAATAGAAAGT 59.931 40.000 0.00 0.00 44.03 2.66
82 83 6.263617 GTGTGTGGGGTTTTCAATAGAAAGTA 59.736 38.462 0.00 0.00 44.03 2.24
83 84 6.488683 TGTGTGGGGTTTTCAATAGAAAGTAG 59.511 38.462 0.00 0.00 44.03 2.57
84 85 5.475564 TGTGGGGTTTTCAATAGAAAGTAGC 59.524 40.000 0.00 0.00 44.03 3.58
85 86 5.710567 GTGGGGTTTTCAATAGAAAGTAGCT 59.289 40.000 0.00 0.00 44.03 3.32
86 87 6.208797 GTGGGGTTTTCAATAGAAAGTAGCTT 59.791 38.462 0.00 0.00 44.03 3.74
87 88 6.433093 TGGGGTTTTCAATAGAAAGTAGCTTC 59.567 38.462 0.00 0.00 44.03 3.86
88 89 6.433093 GGGGTTTTCAATAGAAAGTAGCTTCA 59.567 38.462 0.00 0.00 44.03 3.02
89 90 7.362142 GGGGTTTTCAATAGAAAGTAGCTTCAG 60.362 40.741 0.00 0.00 44.03 3.02
90 91 7.390718 GGGTTTTCAATAGAAAGTAGCTTCAGA 59.609 37.037 0.00 0.00 44.03 3.27
91 92 8.447053 GGTTTTCAATAGAAAGTAGCTTCAGAG 58.553 37.037 0.00 0.00 44.03 3.35
92 93 9.209175 GTTTTCAATAGAAAGTAGCTTCAGAGA 57.791 33.333 0.00 0.00 44.03 3.10
93 94 9.950496 TTTTCAATAGAAAGTAGCTTCAGAGAT 57.050 29.630 0.00 0.00 44.03 2.75
94 95 8.939201 TTCAATAGAAAGTAGCTTCAGAGATG 57.061 34.615 0.00 0.00 0.00 2.90
95 96 7.495901 TCAATAGAAAGTAGCTTCAGAGATGG 58.504 38.462 0.00 0.00 0.00 3.51
96 97 4.135747 AGAAAGTAGCTTCAGAGATGGC 57.864 45.455 0.00 0.00 0.00 4.40
97 98 3.774216 AGAAAGTAGCTTCAGAGATGGCT 59.226 43.478 0.00 0.00 38.62 4.75
98 99 3.817709 AAGTAGCTTCAGAGATGGCTC 57.182 47.619 0.00 0.00 41.62 4.70
108 109 0.179153 GAGATGGCTCTTTTTGGCGC 60.179 55.000 0.00 0.00 38.16 6.53
109 110 1.153765 GATGGCTCTTTTTGGCGCC 60.154 57.895 22.73 22.73 42.78 6.53
111 112 2.049156 GGCTCTTTTTGGCGCCAC 60.049 61.111 32.95 16.21 42.06 5.01
112 113 2.564721 GGCTCTTTTTGGCGCCACT 61.565 57.895 32.95 0.00 42.06 4.00
113 114 1.241315 GGCTCTTTTTGGCGCCACTA 61.241 55.000 32.95 18.37 42.06 2.74
114 115 0.811281 GCTCTTTTTGGCGCCACTAT 59.189 50.000 32.95 0.00 0.00 2.12
115 116 1.202188 GCTCTTTTTGGCGCCACTATC 60.202 52.381 32.95 11.00 0.00 2.08
116 117 2.359900 CTCTTTTTGGCGCCACTATCT 58.640 47.619 32.95 0.00 0.00 1.98
117 118 2.352960 CTCTTTTTGGCGCCACTATCTC 59.647 50.000 32.95 0.00 0.00 2.75
118 119 2.027192 TCTTTTTGGCGCCACTATCTCT 60.027 45.455 32.95 0.00 0.00 3.10
119 120 2.489938 TTTTGGCGCCACTATCTCTT 57.510 45.000 32.95 0.00 0.00 2.85
120 121 1.737838 TTTGGCGCCACTATCTCTTG 58.262 50.000 32.95 0.00 0.00 3.02
121 122 0.613260 TTGGCGCCACTATCTCTTGT 59.387 50.000 32.95 0.00 0.00 3.16
122 123 0.108186 TGGCGCCACTATCTCTTGTG 60.108 55.000 29.03 0.00 0.00 3.33
123 124 0.108138 GGCGCCACTATCTCTTGTGT 60.108 55.000 24.80 0.00 32.76 3.72
124 125 1.002366 GCGCCACTATCTCTTGTGTG 58.998 55.000 0.00 0.00 32.76 3.82
129 130 3.577649 CACTATCTCTTGTGTGGACGT 57.422 47.619 0.00 0.00 0.00 4.34
130 131 3.502920 CACTATCTCTTGTGTGGACGTC 58.497 50.000 7.13 7.13 0.00 4.34
131 132 2.492484 ACTATCTCTTGTGTGGACGTCC 59.508 50.000 28.17 28.17 0.00 4.79
132 133 1.633774 ATCTCTTGTGTGGACGTCCT 58.366 50.000 33.39 8.02 36.82 3.85
133 134 1.410004 TCTCTTGTGTGGACGTCCTT 58.590 50.000 33.39 0.00 36.82 3.36
134 135 1.068588 TCTCTTGTGTGGACGTCCTTG 59.931 52.381 33.39 16.83 36.82 3.61
135 136 0.531974 TCTTGTGTGGACGTCCTTGC 60.532 55.000 33.39 22.90 36.82 4.01
136 137 0.532862 CTTGTGTGGACGTCCTTGCT 60.533 55.000 33.39 0.00 36.82 3.91
137 138 0.813610 TTGTGTGGACGTCCTTGCTG 60.814 55.000 33.39 0.00 36.82 4.41
138 139 1.227556 GTGTGGACGTCCTTGCTGT 60.228 57.895 33.39 0.00 36.82 4.40
139 140 1.227527 TGTGGACGTCCTTGCTGTG 60.228 57.895 33.39 0.00 36.82 3.66
140 141 2.280797 TGGACGTCCTTGCTGTGC 60.281 61.111 33.39 5.94 36.82 4.57
141 142 3.050275 GGACGTCCTTGCTGTGCC 61.050 66.667 27.64 0.00 0.00 5.01
142 143 3.050275 GACGTCCTTGCTGTGCCC 61.050 66.667 3.51 0.00 0.00 5.36
143 144 3.825160 GACGTCCTTGCTGTGCCCA 62.825 63.158 3.51 0.00 0.00 5.36
144 145 2.360350 CGTCCTTGCTGTGCCCAT 60.360 61.111 0.00 0.00 0.00 4.00
145 146 2.693762 CGTCCTTGCTGTGCCCATG 61.694 63.158 0.00 0.00 0.00 3.66
146 147 2.677524 TCCTTGCTGTGCCCATGC 60.678 61.111 0.00 0.00 38.26 4.06
147 148 3.766691 CCTTGCTGTGCCCATGCC 61.767 66.667 0.00 0.00 36.33 4.40
148 149 2.992689 CTTGCTGTGCCCATGCCA 60.993 61.111 0.00 0.00 36.33 4.92
149 150 2.992689 TTGCTGTGCCCATGCCAG 60.993 61.111 0.00 0.00 38.23 4.85
150 151 3.813606 TTGCTGTGCCCATGCCAGT 62.814 57.895 0.00 0.00 37.79 4.00
151 152 2.045045 GCTGTGCCCATGCCAGTA 60.045 61.111 0.00 0.00 37.79 2.74
152 153 1.454479 GCTGTGCCCATGCCAGTAT 60.454 57.895 0.00 0.00 37.79 2.12
153 154 1.731433 GCTGTGCCCATGCCAGTATG 61.731 60.000 0.00 0.00 37.79 2.39
154 155 0.394762 CTGTGCCCATGCCAGTATGT 60.395 55.000 0.00 0.00 36.33 2.29
155 156 0.394216 TGTGCCCATGCCAGTATGTC 60.394 55.000 0.00 0.00 36.33 3.06
156 157 0.107017 GTGCCCATGCCAGTATGTCT 60.107 55.000 0.00 0.00 36.33 3.41
157 158 0.625316 TGCCCATGCCAGTATGTCTT 59.375 50.000 0.00 0.00 36.33 3.01
158 159 1.005805 TGCCCATGCCAGTATGTCTTT 59.994 47.619 0.00 0.00 36.33 2.52
159 160 2.102578 GCCCATGCCAGTATGTCTTTT 58.897 47.619 0.00 0.00 0.00 2.27
160 161 2.497273 GCCCATGCCAGTATGTCTTTTT 59.503 45.455 0.00 0.00 0.00 1.94
199 200 9.476202 AATAAATGAAAAACTAGAAAGTGTGCC 57.524 29.630 0.00 0.00 35.62 5.01
200 201 6.715347 AATGAAAAACTAGAAAGTGTGCCT 57.285 33.333 0.00 0.00 35.62 4.75
201 202 6.715347 ATGAAAAACTAGAAAGTGTGCCTT 57.285 33.333 0.00 0.00 35.62 4.35
202 203 6.131544 TGAAAAACTAGAAAGTGTGCCTTC 57.868 37.500 0.00 0.00 35.62 3.46
203 204 5.885912 TGAAAAACTAGAAAGTGTGCCTTCT 59.114 36.000 0.00 0.00 35.62 2.85
204 205 7.051623 TGAAAAACTAGAAAGTGTGCCTTCTA 58.948 34.615 0.00 0.00 35.62 2.10
205 206 7.554835 TGAAAAACTAGAAAGTGTGCCTTCTAA 59.445 33.333 0.00 0.00 35.62 2.10
206 207 7.875327 AAAACTAGAAAGTGTGCCTTCTAAA 57.125 32.000 0.00 0.00 35.62 1.85
207 208 8.465273 AAAACTAGAAAGTGTGCCTTCTAAAT 57.535 30.769 0.00 0.00 35.62 1.40
208 209 8.465273 AAACTAGAAAGTGTGCCTTCTAAATT 57.535 30.769 0.00 0.00 35.62 1.82
209 210 8.465273 AACTAGAAAGTGTGCCTTCTAAATTT 57.535 30.769 0.00 0.00 35.62 1.82
210 211 7.875971 ACTAGAAAGTGTGCCTTCTAAATTTG 58.124 34.615 0.00 0.00 33.57 2.32
211 212 6.089249 AGAAAGTGTGCCTTCTAAATTTGG 57.911 37.500 0.00 0.00 31.27 3.28
212 213 5.598417 AGAAAGTGTGCCTTCTAAATTTGGT 59.402 36.000 0.00 0.00 31.27 3.67
213 214 5.869649 AAGTGTGCCTTCTAAATTTGGTT 57.130 34.783 0.00 0.00 0.00 3.67
214 215 5.453567 AGTGTGCCTTCTAAATTTGGTTC 57.546 39.130 0.00 0.00 0.00 3.62
215 216 4.892934 AGTGTGCCTTCTAAATTTGGTTCA 59.107 37.500 0.00 0.00 0.00 3.18
216 217 5.539955 AGTGTGCCTTCTAAATTTGGTTCAT 59.460 36.000 0.00 0.00 0.00 2.57
217 218 5.634859 GTGTGCCTTCTAAATTTGGTTCATG 59.365 40.000 0.00 0.00 0.00 3.07
218 219 4.627035 GTGCCTTCTAAATTTGGTTCATGC 59.373 41.667 0.00 0.03 0.00 4.06
219 220 4.183865 GCCTTCTAAATTTGGTTCATGCC 58.816 43.478 0.00 0.00 0.00 4.40
220 221 4.322650 GCCTTCTAAATTTGGTTCATGCCA 60.323 41.667 0.00 0.00 36.62 4.92
221 222 5.627503 GCCTTCTAAATTTGGTTCATGCCAT 60.628 40.000 0.00 0.00 38.48 4.40
222 223 6.406849 GCCTTCTAAATTTGGTTCATGCCATA 60.407 38.462 0.00 0.00 38.48 2.74
223 224 6.980397 CCTTCTAAATTTGGTTCATGCCATAC 59.020 38.462 0.00 0.00 38.48 2.39
224 225 7.363705 CCTTCTAAATTTGGTTCATGCCATACA 60.364 37.037 0.00 0.00 38.48 2.29
225 226 7.473735 TCTAAATTTGGTTCATGCCATACAA 57.526 32.000 0.00 0.00 38.48 2.41
226 227 7.901029 TCTAAATTTGGTTCATGCCATACAAA 58.099 30.769 0.00 0.00 38.48 2.83
227 228 8.370940 TCTAAATTTGGTTCATGCCATACAAAA 58.629 29.630 0.00 0.00 38.48 2.44
228 229 7.999450 AAATTTGGTTCATGCCATACAAAAT 57.001 28.000 0.00 0.00 38.48 1.82
230 231 9.512588 AAATTTGGTTCATGCCATACAAAATAA 57.487 25.926 0.00 0.00 38.48 1.40
231 232 9.683870 AATTTGGTTCATGCCATACAAAATAAT 57.316 25.926 0.00 0.00 38.48 1.28
288 289 6.998802 TCAAATTGGTTAATTGGTTAGGTGG 58.001 36.000 0.00 0.00 36.65 4.61
289 290 6.782988 TCAAATTGGTTAATTGGTTAGGTGGA 59.217 34.615 0.00 0.00 36.65 4.02
290 291 7.290248 TCAAATTGGTTAATTGGTTAGGTGGAA 59.710 33.333 0.00 0.00 36.65 3.53
291 292 7.619512 AATTGGTTAATTGGTTAGGTGGAAA 57.380 32.000 0.00 0.00 35.26 3.13
292 293 6.408107 TTGGTTAATTGGTTAGGTGGAAAC 57.592 37.500 0.00 0.00 0.00 2.78
293 294 5.455872 TGGTTAATTGGTTAGGTGGAAACA 58.544 37.500 0.00 0.00 38.70 2.83
294 295 6.078664 TGGTTAATTGGTTAGGTGGAAACAT 58.921 36.000 0.00 0.00 46.14 2.71
295 296 7.239438 TGGTTAATTGGTTAGGTGGAAACATA 58.761 34.615 0.00 0.00 46.14 2.29
296 297 7.896496 TGGTTAATTGGTTAGGTGGAAACATAT 59.104 33.333 0.00 0.00 46.14 1.78
297 298 8.755028 GGTTAATTGGTTAGGTGGAAACATATT 58.245 33.333 0.00 0.00 46.14 1.28
343 344 8.721019 TTTTTGTTTCTTTCATGCTTCAATCT 57.279 26.923 0.00 0.00 0.00 2.40
344 345 8.721019 TTTTGTTTCTTTCATGCTTCAATCTT 57.279 26.923 0.00 0.00 0.00 2.40
345 346 7.703298 TTGTTTCTTTCATGCTTCAATCTTG 57.297 32.000 0.00 0.00 0.00 3.02
346 347 7.041635 TGTTTCTTTCATGCTTCAATCTTGA 57.958 32.000 0.00 0.00 34.92 3.02
347 348 7.490840 TGTTTCTTTCATGCTTCAATCTTGAA 58.509 30.769 5.33 5.33 44.31 2.69
348 349 7.980662 TGTTTCTTTCATGCTTCAATCTTGAAA 59.019 29.630 6.79 3.18 45.61 2.69
349 350 8.985805 GTTTCTTTCATGCTTCAATCTTGAAAT 58.014 29.630 6.79 0.00 45.61 2.17
350 351 8.528917 TTCTTTCATGCTTCAATCTTGAAATG 57.471 30.769 6.79 8.36 45.61 2.32
351 352 7.888424 TCTTTCATGCTTCAATCTTGAAATGA 58.112 30.769 12.66 12.66 45.61 2.57
352 353 8.361889 TCTTTCATGCTTCAATCTTGAAATGAA 58.638 29.630 19.32 19.32 44.42 2.57
353 354 9.151471 CTTTCATGCTTCAATCTTGAAATGAAT 57.849 29.630 21.68 6.59 44.88 2.57
354 355 9.496873 TTTCATGCTTCAATCTTGAAATGAATT 57.503 25.926 21.68 0.00 44.88 2.17
355 356 8.474006 TCATGCTTCAATCTTGAAATGAATTG 57.526 30.769 13.67 5.25 45.61 2.32
356 357 8.092068 TCATGCTTCAATCTTGAAATGAATTGT 58.908 29.630 13.67 0.00 45.61 2.71
357 358 8.717821 CATGCTTCAATCTTGAAATGAATTGTT 58.282 29.630 10.00 0.00 45.61 2.83
358 359 8.301730 TGCTTCAATCTTGAAATGAATTGTTC 57.698 30.769 6.79 0.00 45.61 3.18
359 360 7.927092 TGCTTCAATCTTGAAATGAATTGTTCA 59.073 29.630 6.79 0.00 45.61 3.18
360 361 8.767085 GCTTCAATCTTGAAATGAATTGTTCAA 58.233 29.630 6.79 7.81 45.61 2.69
363 364 9.984190 TCAATCTTGAAATGAATTGTTCAATGA 57.016 25.926 8.30 7.35 41.57 2.57
366 367 8.821147 TCTTGAAATGAATTGTTCAATGAAGG 57.179 30.769 0.00 0.36 43.95 3.46
367 368 8.640651 TCTTGAAATGAATTGTTCAATGAAGGA 58.359 29.630 0.00 0.00 43.95 3.36
368 369 9.431887 CTTGAAATGAATTGTTCAATGAAGGAT 57.568 29.630 0.00 0.00 43.95 3.24
369 370 8.766000 TGAAATGAATTGTTCAATGAAGGATG 57.234 30.769 0.00 0.00 43.95 3.51
370 371 7.332430 TGAAATGAATTGTTCAATGAAGGATGC 59.668 33.333 0.00 0.00 43.95 3.91
371 372 5.725325 TGAATTGTTCAATGAAGGATGCA 57.275 34.783 0.00 0.00 36.59 3.96
372 373 5.472148 TGAATTGTTCAATGAAGGATGCAC 58.528 37.500 0.00 0.00 36.59 4.57
373 374 5.010820 TGAATTGTTCAATGAAGGATGCACA 59.989 36.000 0.00 0.00 36.59 4.57
374 375 5.670792 ATTGTTCAATGAAGGATGCACAT 57.329 34.783 0.00 0.00 0.00 3.21
375 376 4.443913 TGTTCAATGAAGGATGCACATG 57.556 40.909 0.00 0.00 0.00 3.21
376 377 3.827876 TGTTCAATGAAGGATGCACATGT 59.172 39.130 0.00 0.00 0.00 3.21
377 378 4.171005 GTTCAATGAAGGATGCACATGTG 58.829 43.478 21.83 21.83 0.00 3.21
378 379 3.688235 TCAATGAAGGATGCACATGTGA 58.312 40.909 29.80 14.54 0.00 3.58
379 380 4.274978 TCAATGAAGGATGCACATGTGAT 58.725 39.130 29.80 18.46 0.00 3.06
380 381 4.337274 TCAATGAAGGATGCACATGTGATC 59.663 41.667 29.80 24.27 0.00 2.92
381 382 3.353370 TGAAGGATGCACATGTGATCA 57.647 42.857 29.80 18.40 0.00 2.92
382 383 3.688235 TGAAGGATGCACATGTGATCAA 58.312 40.909 29.80 11.35 0.00 2.57
383 384 4.274978 TGAAGGATGCACATGTGATCAAT 58.725 39.130 29.80 18.09 0.00 2.57
384 385 4.337274 TGAAGGATGCACATGTGATCAATC 59.663 41.667 29.80 23.49 0.00 2.67
385 386 4.166246 AGGATGCACATGTGATCAATCT 57.834 40.909 29.80 15.49 0.00 2.40
386 387 4.533815 AGGATGCACATGTGATCAATCTT 58.466 39.130 29.80 17.23 0.00 2.40
387 388 4.338400 AGGATGCACATGTGATCAATCTTG 59.662 41.667 29.80 0.00 0.00 3.02
388 389 4.337274 GGATGCACATGTGATCAATCTTGA 59.663 41.667 29.80 0.00 42.14 3.02
389 390 5.163591 GGATGCACATGTGATCAATCTTGAA 60.164 40.000 29.80 0.00 41.13 2.69
390 391 5.708877 TGCACATGTGATCAATCTTGAAA 57.291 34.783 29.80 0.00 41.13 2.69
391 392 6.275494 TGCACATGTGATCAATCTTGAAAT 57.725 33.333 29.80 0.00 41.13 2.17
392 393 7.393841 TGCACATGTGATCAATCTTGAAATA 57.606 32.000 29.80 0.00 41.13 1.40
393 394 7.828712 TGCACATGTGATCAATCTTGAAATAA 58.171 30.769 29.80 0.00 41.13 1.40
394 395 8.305317 TGCACATGTGATCAATCTTGAAATAAA 58.695 29.630 29.80 0.00 41.13 1.40
395 396 9.309516 GCACATGTGATCAATCTTGAAATAAAT 57.690 29.630 29.80 0.00 41.13 1.40
412 413 9.378551 TGAAATAAATAGCATTAGTTGAGACGT 57.621 29.630 0.00 0.00 0.00 4.34
413 414 9.638300 GAAATAAATAGCATTAGTTGAGACGTG 57.362 33.333 0.00 0.00 0.00 4.49
414 415 5.470845 AAATAGCATTAGTTGAGACGTGC 57.529 39.130 0.00 0.00 35.34 5.34
415 416 2.455674 AGCATTAGTTGAGACGTGCA 57.544 45.000 0.00 0.00 36.59 4.57
416 417 2.977914 AGCATTAGTTGAGACGTGCAT 58.022 42.857 0.00 0.00 36.59 3.96
417 418 3.338249 AGCATTAGTTGAGACGTGCATT 58.662 40.909 0.00 0.00 36.59 3.56
418 419 3.125829 AGCATTAGTTGAGACGTGCATTG 59.874 43.478 0.00 0.00 36.59 2.82
419 420 3.419915 CATTAGTTGAGACGTGCATTGC 58.580 45.455 0.46 0.46 0.00 3.56
420 421 2.162319 TAGTTGAGACGTGCATTGCA 57.838 45.000 7.38 7.38 35.60 4.08
439 440 4.530094 GCACGTGCATGCTTACTATTAA 57.470 40.909 34.52 0.00 42.62 1.40
440 441 4.518217 GCACGTGCATGCTTACTATTAAG 58.482 43.478 34.52 0.30 42.62 1.85
441 442 4.270084 GCACGTGCATGCTTACTATTAAGA 59.730 41.667 34.52 0.00 42.62 2.10
442 443 5.220586 GCACGTGCATGCTTACTATTAAGAA 60.221 40.000 34.52 0.00 42.62 2.52
443 444 6.511767 GCACGTGCATGCTTACTATTAAGAAT 60.512 38.462 34.52 0.00 42.62 2.40
444 445 7.409697 CACGTGCATGCTTACTATTAAGAATT 58.590 34.615 20.33 0.00 37.49 2.17
445 446 8.547894 CACGTGCATGCTTACTATTAAGAATTA 58.452 33.333 20.33 0.00 37.49 1.40
446 447 9.104965 ACGTGCATGCTTACTATTAAGAATTAA 57.895 29.630 20.33 0.00 45.80 1.40
447 448 9.929722 CGTGCATGCTTACTATTAAGAATTAAA 57.070 29.630 20.33 0.00 44.76 1.52
609 610 2.716017 GCGGAGACAGACCAGGAGG 61.716 68.421 0.00 0.00 42.21 4.30
610 611 2.716017 CGGAGACAGACCAGGAGGC 61.716 68.421 0.00 0.00 39.06 4.70
611 612 1.610673 GGAGACAGACCAGGAGGCA 60.611 63.158 0.00 0.00 39.06 4.75
612 613 1.612395 GGAGACAGACCAGGAGGCAG 61.612 65.000 0.00 0.00 39.06 4.85
787 791 4.467107 GAGGAGGAGGCGGAGGGT 62.467 72.222 0.00 0.00 0.00 4.34
1080 1137 9.403110 CTTCATGGTTCTTGATACAAAGAAAAG 57.597 33.333 1.19 0.00 45.30 2.27
1140 1197 3.889196 TTTTTCGAGAACAATCACGGG 57.111 42.857 0.00 0.00 39.67 5.28
1303 1360 6.585695 AAAGCATGAGATTTCAGACAATGT 57.414 33.333 0.00 0.00 36.61 2.71
1358 1543 4.287238 CAAAACTAGACAGGCGTTTTGT 57.713 40.909 15.02 0.00 45.98 2.83
1376 1570 6.020678 CGTTTTGTCCAGAATGAAAAGACAAC 60.021 38.462 3.54 0.00 39.69 3.32
1390 1584 3.290308 AGACAACGTGCAAAAACACAA 57.710 38.095 0.00 0.00 40.73 3.33
1468 1662 7.658167 TGTACTTGGTCAAACGAGAATTAATGA 59.342 33.333 0.00 0.00 0.00 2.57
1469 1663 7.504924 ACTTGGTCAAACGAGAATTAATGAA 57.495 32.000 0.00 0.00 0.00 2.57
1497 1691 4.454728 TTGCAATTTGATGGCTTAGACC 57.545 40.909 0.00 0.00 0.00 3.85
1576 1770 3.090219 AACTAGGCATCCGACCGGC 62.090 63.158 0.00 0.00 34.68 6.13
1586 1780 1.669760 CCGACCGGCAACAAAGCTA 60.670 57.895 0.00 0.00 34.17 3.32
1590 1784 0.328258 ACCGGCAACAAAGCTAGGAT 59.672 50.000 0.00 0.00 36.57 3.24
1592 1786 2.213499 CCGGCAACAAAGCTAGGATAG 58.787 52.381 0.00 0.00 43.09 2.08
1655 1877 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
1656 1878 4.247380 GGAGGCCGAGCTCCATGG 62.247 72.222 4.97 4.97 39.45 3.66
1657 1879 3.157252 GAGGCCGAGCTCCATGGA 61.157 66.667 15.27 15.27 0.00 3.41
1658 1880 3.160047 AGGCCGAGCTCCATGGAG 61.160 66.667 33.73 33.73 44.56 3.86
1834 2056 6.524734 AGAAAAATCTGGGGCTTTTTAACAG 58.475 36.000 0.00 0.00 35.34 3.16
1844 2066 7.582719 TGGGGCTTTTTAACAGATGATACTAT 58.417 34.615 0.00 0.00 0.00 2.12
1845 2067 7.719633 TGGGGCTTTTTAACAGATGATACTATC 59.280 37.037 0.00 0.00 0.00 2.08
1860 2082 0.474466 CTATCCATCCTCCCAGGCCA 60.474 60.000 5.01 0.00 34.61 5.36
1868 2090 2.213310 TCCTCCCAGGCCATGAATTTA 58.787 47.619 5.01 0.00 34.61 1.40
1952 2176 5.590530 AACATCCTTGTTTACTTGCACAA 57.409 34.783 0.00 0.00 43.57 3.33
2042 2266 2.966309 GCCAAGAGCCAAACGACCG 61.966 63.158 0.00 0.00 34.35 4.79
2055 2279 4.452733 GACCGTTCTCCCAGCCCG 62.453 72.222 0.00 0.00 0.00 6.13
2153 2378 7.915293 TGTGGTTTTTCATTGACGATATAGT 57.085 32.000 0.00 0.00 0.00 2.12
2154 2379 7.747888 TGTGGTTTTTCATTGACGATATAGTG 58.252 34.615 0.00 0.00 0.00 2.74
2175 2400 4.922206 TGGAATGCCATGTCTTTCTAACT 58.078 39.130 0.00 0.00 39.92 2.24
2239 2473 1.950954 GCAGTAGGAAAGCAAGGACCC 60.951 57.143 0.00 0.00 0.00 4.46
2446 2706 6.470557 AGTTACAATTCACATGCAATTTGC 57.529 33.333 14.49 14.49 45.29 3.68
2852 3124 4.043435 AGCTAACCAAAAGAAGGTCAGGAT 59.957 41.667 0.00 0.00 38.76 3.24
2884 3156 9.277783 AGATATTTGGTTTCATGCTACATCTAC 57.722 33.333 0.00 0.00 0.00 2.59
2885 3157 9.277783 GATATTTGGTTTCATGCTACATCTACT 57.722 33.333 0.00 0.00 0.00 2.57
2886 3158 6.985188 TTTGGTTTCATGCTACATCTACTC 57.015 37.500 0.00 0.00 0.00 2.59
2887 3159 5.023533 TGGTTTCATGCTACATCTACTCC 57.976 43.478 0.00 0.00 0.00 3.85
2888 3160 4.141711 TGGTTTCATGCTACATCTACTCCC 60.142 45.833 0.00 0.00 0.00 4.30
2889 3161 4.101741 GGTTTCATGCTACATCTACTCCCT 59.898 45.833 0.00 0.00 0.00 4.20
2890 3162 5.293560 GTTTCATGCTACATCTACTCCCTC 58.706 45.833 0.00 0.00 0.00 4.30
2891 3163 3.501349 TCATGCTACATCTACTCCCTCC 58.499 50.000 0.00 0.00 0.00 4.30
2892 3164 1.982660 TGCTACATCTACTCCCTCCG 58.017 55.000 0.00 0.00 0.00 4.63
2893 3165 1.214673 TGCTACATCTACTCCCTCCGT 59.785 52.381 0.00 0.00 0.00 4.69
2894 3166 2.440627 TGCTACATCTACTCCCTCCGTA 59.559 50.000 0.00 0.00 0.00 4.02
2895 3167 3.117776 TGCTACATCTACTCCCTCCGTAA 60.118 47.826 0.00 0.00 0.00 3.18
2896 3168 3.887716 GCTACATCTACTCCCTCCGTAAA 59.112 47.826 0.00 0.00 0.00 2.01
2897 3169 4.261530 GCTACATCTACTCCCTCCGTAAAC 60.262 50.000 0.00 0.00 0.00 2.01
2898 3170 3.978610 ACATCTACTCCCTCCGTAAACT 58.021 45.455 0.00 0.00 0.00 2.66
2899 3171 5.121380 ACATCTACTCCCTCCGTAAACTA 57.879 43.478 0.00 0.00 0.00 2.24
2900 3172 5.513233 ACATCTACTCCCTCCGTAAACTAA 58.487 41.667 0.00 0.00 0.00 2.24
2901 3173 6.134754 ACATCTACTCCCTCCGTAAACTAAT 58.865 40.000 0.00 0.00 0.00 1.73
2902 3174 7.293073 ACATCTACTCCCTCCGTAAACTAATA 58.707 38.462 0.00 0.00 0.00 0.98
2903 3175 7.949006 ACATCTACTCCCTCCGTAAACTAATAT 59.051 37.037 0.00 0.00 0.00 1.28
2904 3176 9.458727 CATCTACTCCCTCCGTAAACTAATATA 57.541 37.037 0.00 0.00 0.00 0.86
2906 3178 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
2907 3179 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
2908 3180 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2909 3181 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2910 3182 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2911 3183 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2912 3184 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2913 3185 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2914 3186 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2915 3187 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2916 3188 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2925 3197 6.963083 ATAAGAGCGTTTAGATCACTACCT 57.037 37.500 0.00 0.00 37.82 3.08
2926 3198 5.662674 AAGAGCGTTTAGATCACTACCTT 57.337 39.130 0.00 0.00 37.82 3.50
2927 3199 6.770746 AAGAGCGTTTAGATCACTACCTTA 57.229 37.500 0.00 0.00 37.82 2.69
2928 3200 6.380095 AGAGCGTTTAGATCACTACCTTAG 57.620 41.667 0.00 0.00 37.82 2.18
2929 3201 5.887035 AGAGCGTTTAGATCACTACCTTAGT 59.113 40.000 0.00 0.00 37.82 2.24
2943 3215 7.964666 ACTACCTTAGTGATCTAAAAGCTCT 57.035 36.000 0.00 0.00 37.69 4.09
2944 3216 8.368962 ACTACCTTAGTGATCTAAAAGCTCTT 57.631 34.615 0.00 0.00 37.69 2.85
2945 3217 9.476928 ACTACCTTAGTGATCTAAAAGCTCTTA 57.523 33.333 0.00 0.00 37.69 2.10
2963 3235 9.435570 AAGCTCTTATATTAGTTTACAGAGGGA 57.564 33.333 0.00 0.00 0.00 4.20
2964 3236 9.084533 AGCTCTTATATTAGTTTACAGAGGGAG 57.915 37.037 0.00 0.00 0.00 4.30
2965 3237 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3299 3571 6.540189 TCAGCTAATCCAGAAGTTAAATCTGC 59.460 38.462 12.08 2.94 42.36 4.26
3647 3920 2.159585 TGTAATGCATGCACGTGCTAAC 60.160 45.455 37.59 26.34 45.27 2.34
3827 4101 2.636830 GATGCAGCAACATCTGTAGGT 58.363 47.619 0.00 0.00 42.63 3.08
3953 4227 2.027285 AGGCCATATTTTGTTGCAACCC 60.027 45.455 26.14 15.97 0.00 4.11
3981 4255 9.739276 TCATTTGTCCATTCCCTTCATATATAC 57.261 33.333 0.00 0.00 0.00 1.47
4683 4963 7.550906 GTCTATTTCAGCAGTAGATCCAAAACT 59.449 37.037 0.00 0.00 0.00 2.66
4720 5000 9.123709 CGCTTTAAAGATTTTGTATACAAAGCA 57.876 29.630 25.62 15.86 45.34 3.91
4753 5033 7.251321 AGACAAGGTAGACATCTGAAAAGAT 57.749 36.000 0.00 0.00 0.00 2.40
4860 5140 3.633235 CTCGATGCCTCTACATGTACAC 58.367 50.000 0.08 0.00 0.00 2.90
4909 5189 2.569404 AGAAAGAGCTTGAGAATCGGGT 59.431 45.455 0.00 0.00 38.61 5.28
5066 5346 5.181433 GCCTTTCTACAGGTACTTTTTCAGG 59.819 44.000 0.00 0.00 34.60 3.86
5159 5439 5.722021 TGTTAGTGTAGATGCTGACTTGA 57.278 39.130 0.00 0.00 0.00 3.02
5253 5533 8.908903 TGTAAATGTTTTACCTGAGTTGACATT 58.091 29.630 7.47 0.00 35.16 2.71
5315 5595 7.862372 TGTTTTCTTTGTATCTGAATTGCTGAC 59.138 33.333 0.00 0.00 0.00 3.51
5373 5653 4.344679 TGACCAATTTGAATTGCTGGACTT 59.655 37.500 10.26 0.00 43.38 3.01
5374 5654 4.634199 ACCAATTTGAATTGCTGGACTTG 58.366 39.130 10.26 0.00 43.38 3.16
5376 5656 4.927425 CCAATTTGAATTGCTGGACTTGAG 59.073 41.667 10.26 0.00 43.38 3.02
5517 5797 3.574614 AGTTTTATGATTTGGCGTGTGC 58.425 40.909 0.00 0.00 41.71 4.57
5545 5825 3.376918 GCTTTGAGGCACCCCTGC 61.377 66.667 0.00 0.00 43.12 4.85
5547 5827 2.203480 TTTGAGGCACCCCTGCAC 60.203 61.111 0.00 0.00 46.28 4.57
5548 5828 3.808218 TTTGAGGCACCCCTGCACC 62.808 63.158 0.00 0.00 46.28 5.01
5554 5834 2.035626 CACCCCTGCACCGGAAAT 59.964 61.111 9.46 0.00 0.00 2.17
5555 5835 1.301623 CACCCCTGCACCGGAAATA 59.698 57.895 9.46 0.00 0.00 1.40
5556 5836 0.322997 CACCCCTGCACCGGAAATAA 60.323 55.000 9.46 0.00 0.00 1.40
5557 5837 0.323087 ACCCCTGCACCGGAAATAAC 60.323 55.000 9.46 0.00 0.00 1.89
5558 5838 0.034477 CCCCTGCACCGGAAATAACT 60.034 55.000 9.46 0.00 0.00 2.24
5559 5839 1.094785 CCCTGCACCGGAAATAACTG 58.905 55.000 9.46 0.00 0.00 3.16
5560 5840 1.339631 CCCTGCACCGGAAATAACTGA 60.340 52.381 9.46 0.00 0.00 3.41
5561 5841 1.737793 CCTGCACCGGAAATAACTGAC 59.262 52.381 9.46 0.00 0.00 3.51
5562 5842 1.393539 CTGCACCGGAAATAACTGACG 59.606 52.381 9.46 0.00 0.00 4.35
5563 5843 1.270412 TGCACCGGAAATAACTGACGT 60.270 47.619 9.46 0.00 0.00 4.34
5564 5844 1.127951 GCACCGGAAATAACTGACGTG 59.872 52.381 9.46 0.00 0.00 4.49
5589 5892 7.094549 TGGTTTTAGTTCATCAGTTATTTCCGG 60.095 37.037 0.00 0.00 0.00 5.14
5608 5911 1.104630 GACGGAGGGAGTACAAGAGG 58.895 60.000 0.00 0.00 0.00 3.69
5643 5946 6.179756 TCTGAAGCTTTGTGCATAGGATTTA 58.820 36.000 0.00 0.00 45.94 1.40
5678 5981 3.190439 AGTGCTTGGGTAGGTTTAGGAT 58.810 45.455 0.00 0.00 0.00 3.24
5723 6026 9.178758 GATCATAGAACAAAGTTGGGTAGATTT 57.821 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.338337 CGGTTCCAGCAGATACGAGAT 59.662 52.381 0.00 0.00 0.00 2.75
1 2 0.738975 CGGTTCCAGCAGATACGAGA 59.261 55.000 0.00 0.00 0.00 4.04
2 3 0.738975 TCGGTTCCAGCAGATACGAG 59.261 55.000 0.00 0.00 31.74 4.18
3 4 0.738975 CTCGGTTCCAGCAGATACGA 59.261 55.000 0.00 0.00 33.60 3.43
4 5 0.872021 GCTCGGTTCCAGCAGATACG 60.872 60.000 7.87 0.00 36.82 3.06
5 6 0.872021 CGCTCGGTTCCAGCAGATAC 60.872 60.000 11.51 0.00 36.61 2.24
6 7 1.320344 ACGCTCGGTTCCAGCAGATA 61.320 55.000 11.51 0.00 36.61 1.98
7 8 2.185350 CGCTCGGTTCCAGCAGAT 59.815 61.111 11.51 0.00 36.61 2.90
8 9 3.303135 ACGCTCGGTTCCAGCAGA 61.303 61.111 11.51 0.00 36.61 4.26
9 10 2.842394 ATCACGCTCGGTTCCAGCAG 62.842 60.000 11.51 7.96 36.61 4.24
10 11 2.835701 GATCACGCTCGGTTCCAGCA 62.836 60.000 11.51 0.00 36.61 4.41
11 12 2.125512 ATCACGCTCGGTTCCAGC 60.126 61.111 0.00 4.16 0.00 4.85
12 13 0.108615 AAGATCACGCTCGGTTCCAG 60.109 55.000 0.00 0.00 0.00 3.86
13 14 0.108804 GAAGATCACGCTCGGTTCCA 60.109 55.000 0.00 0.00 0.00 3.53
14 15 0.806492 GGAAGATCACGCTCGGTTCC 60.806 60.000 0.00 0.00 0.00 3.62
15 16 0.173708 AGGAAGATCACGCTCGGTTC 59.826 55.000 0.00 0.00 0.00 3.62
16 17 1.471119 TAGGAAGATCACGCTCGGTT 58.529 50.000 0.00 0.00 0.00 4.44
17 18 1.471119 TTAGGAAGATCACGCTCGGT 58.529 50.000 0.00 0.00 0.00 4.69
18 19 2.802787 ATTAGGAAGATCACGCTCGG 57.197 50.000 0.00 0.00 0.00 4.63
19 20 3.610242 GCATATTAGGAAGATCACGCTCG 59.390 47.826 0.00 0.00 0.00 5.03
20 21 3.929610 GGCATATTAGGAAGATCACGCTC 59.070 47.826 0.00 0.00 0.00 5.03
21 22 3.324846 TGGCATATTAGGAAGATCACGCT 59.675 43.478 0.00 0.00 0.00 5.07
22 23 3.664107 TGGCATATTAGGAAGATCACGC 58.336 45.455 0.00 0.00 0.00 5.34
23 24 6.867550 TCTATGGCATATTAGGAAGATCACG 58.132 40.000 7.81 0.00 0.00 4.35
24 25 9.323985 GAATCTATGGCATATTAGGAAGATCAC 57.676 37.037 7.81 2.54 0.00 3.06
25 26 9.050154 TGAATCTATGGCATATTAGGAAGATCA 57.950 33.333 7.81 5.96 0.00 2.92
26 27 9.545105 CTGAATCTATGGCATATTAGGAAGATC 57.455 37.037 7.81 3.77 0.00 2.75
27 28 8.492782 CCTGAATCTATGGCATATTAGGAAGAT 58.507 37.037 7.81 4.31 0.00 2.40
28 29 7.092712 CCCTGAATCTATGGCATATTAGGAAGA 60.093 40.741 15.37 7.46 0.00 2.87
29 30 7.052873 CCCTGAATCTATGGCATATTAGGAAG 58.947 42.308 15.37 2.64 0.00 3.46
30 31 6.505344 ACCCTGAATCTATGGCATATTAGGAA 59.495 38.462 15.37 0.00 0.00 3.36
31 32 6.032039 ACCCTGAATCTATGGCATATTAGGA 58.968 40.000 15.37 7.56 0.00 2.94
32 33 6.319048 ACCCTGAATCTATGGCATATTAGG 57.681 41.667 7.81 8.77 0.00 2.69
33 34 7.984050 CACTACCCTGAATCTATGGCATATTAG 59.016 40.741 7.81 0.00 0.00 1.73
34 35 7.457852 ACACTACCCTGAATCTATGGCATATTA 59.542 37.037 7.81 0.00 0.00 0.98
35 36 6.273260 ACACTACCCTGAATCTATGGCATATT 59.727 38.462 7.81 1.02 0.00 1.28
36 37 5.787494 ACACTACCCTGAATCTATGGCATAT 59.213 40.000 7.81 0.00 0.00 1.78
37 38 5.012046 CACACTACCCTGAATCTATGGCATA 59.988 44.000 7.06 7.06 0.00 3.14
38 39 3.976654 ACACTACCCTGAATCTATGGCAT 59.023 43.478 4.88 4.88 0.00 4.40
39 40 3.134623 CACACTACCCTGAATCTATGGCA 59.865 47.826 0.00 0.00 0.00 4.92
40 41 3.134804 ACACACTACCCTGAATCTATGGC 59.865 47.826 0.00 0.00 0.00 4.40
41 42 4.443457 CCACACACTACCCTGAATCTATGG 60.443 50.000 0.00 0.00 0.00 2.74
42 43 4.443457 CCCACACACTACCCTGAATCTATG 60.443 50.000 0.00 0.00 0.00 2.23
43 44 3.711704 CCCACACACTACCCTGAATCTAT 59.288 47.826 0.00 0.00 0.00 1.98
44 45 3.104512 CCCACACACTACCCTGAATCTA 58.895 50.000 0.00 0.00 0.00 1.98
45 46 1.909302 CCCACACACTACCCTGAATCT 59.091 52.381 0.00 0.00 0.00 2.40
46 47 1.065418 CCCCACACACTACCCTGAATC 60.065 57.143 0.00 0.00 0.00 2.52
47 48 0.991920 CCCCACACACTACCCTGAAT 59.008 55.000 0.00 0.00 0.00 2.57
48 49 0.400815 ACCCCACACACTACCCTGAA 60.401 55.000 0.00 0.00 0.00 3.02
49 50 0.400815 AACCCCACACACTACCCTGA 60.401 55.000 0.00 0.00 0.00 3.86
50 51 0.476771 AAACCCCACACACTACCCTG 59.523 55.000 0.00 0.00 0.00 4.45
51 52 1.144298 GAAAACCCCACACACTACCCT 59.856 52.381 0.00 0.00 0.00 4.34
52 53 1.133730 TGAAAACCCCACACACTACCC 60.134 52.381 0.00 0.00 0.00 3.69
53 54 2.351706 TGAAAACCCCACACACTACC 57.648 50.000 0.00 0.00 0.00 3.18
54 55 5.310451 TCTATTGAAAACCCCACACACTAC 58.690 41.667 0.00 0.00 0.00 2.73
55 56 5.570205 TCTATTGAAAACCCCACACACTA 57.430 39.130 0.00 0.00 0.00 2.74
56 57 4.447138 TCTATTGAAAACCCCACACACT 57.553 40.909 0.00 0.00 0.00 3.55
57 58 5.068591 ACTTTCTATTGAAAACCCCACACAC 59.931 40.000 3.95 0.00 41.09 3.82
58 59 5.205056 ACTTTCTATTGAAAACCCCACACA 58.795 37.500 3.95 0.00 41.09 3.72
59 60 5.784578 ACTTTCTATTGAAAACCCCACAC 57.215 39.130 3.95 0.00 41.09 3.82
60 61 5.475564 GCTACTTTCTATTGAAAACCCCACA 59.524 40.000 3.95 0.00 41.09 4.17
61 62 5.710567 AGCTACTTTCTATTGAAAACCCCAC 59.289 40.000 3.95 0.00 41.09 4.61
62 63 5.887754 AGCTACTTTCTATTGAAAACCCCA 58.112 37.500 3.95 0.00 41.09 4.96
63 64 6.433093 TGAAGCTACTTTCTATTGAAAACCCC 59.567 38.462 3.95 0.00 41.09 4.95
64 65 7.390718 TCTGAAGCTACTTTCTATTGAAAACCC 59.609 37.037 3.95 0.00 41.09 4.11
65 66 8.324163 TCTGAAGCTACTTTCTATTGAAAACC 57.676 34.615 3.95 0.00 41.09 3.27
66 67 9.209175 TCTCTGAAGCTACTTTCTATTGAAAAC 57.791 33.333 3.95 0.00 41.09 2.43
67 68 9.950496 ATCTCTGAAGCTACTTTCTATTGAAAA 57.050 29.630 3.95 0.00 41.09 2.29
68 69 9.376075 CATCTCTGAAGCTACTTTCTATTGAAA 57.624 33.333 2.38 2.38 39.59 2.69
69 70 7.984050 CCATCTCTGAAGCTACTTTCTATTGAA 59.016 37.037 0.00 0.00 0.00 2.69
70 71 7.495901 CCATCTCTGAAGCTACTTTCTATTGA 58.504 38.462 0.00 0.00 0.00 2.57
71 72 6.202570 GCCATCTCTGAAGCTACTTTCTATTG 59.797 42.308 0.00 0.00 0.00 1.90
72 73 6.099557 AGCCATCTCTGAAGCTACTTTCTATT 59.900 38.462 0.00 0.00 32.73 1.73
73 74 5.602145 AGCCATCTCTGAAGCTACTTTCTAT 59.398 40.000 0.00 0.00 32.73 1.98
74 75 4.959210 AGCCATCTCTGAAGCTACTTTCTA 59.041 41.667 0.00 0.00 32.73 2.10
75 76 3.774216 AGCCATCTCTGAAGCTACTTTCT 59.226 43.478 0.00 0.00 32.73 2.52
76 77 4.119136 GAGCCATCTCTGAAGCTACTTTC 58.881 47.826 0.00 0.00 35.23 2.62
77 78 4.135747 GAGCCATCTCTGAAGCTACTTT 57.864 45.455 0.00 0.00 35.23 2.66
78 79 3.817709 GAGCCATCTCTGAAGCTACTT 57.182 47.619 0.00 0.00 35.23 2.24
89 90 0.179153 GCGCCAAAAAGAGCCATCTC 60.179 55.000 0.00 0.00 39.65 2.75
90 91 1.885871 GCGCCAAAAAGAGCCATCT 59.114 52.632 0.00 0.00 37.39 2.90
91 92 4.483711 GCGCCAAAAAGAGCCATC 57.516 55.556 0.00 0.00 0.00 3.51
95 96 0.811281 ATAGTGGCGCCAAAAAGAGC 59.189 50.000 34.66 17.47 0.00 4.09
96 97 2.352960 GAGATAGTGGCGCCAAAAAGAG 59.647 50.000 34.66 0.00 0.00 2.85
97 98 2.027192 AGAGATAGTGGCGCCAAAAAGA 60.027 45.455 34.66 15.17 0.00 2.52
98 99 2.359900 AGAGATAGTGGCGCCAAAAAG 58.640 47.619 34.66 0.00 0.00 2.27
99 100 2.487762 CAAGAGATAGTGGCGCCAAAAA 59.512 45.455 34.66 20.17 0.00 1.94
100 101 2.083774 CAAGAGATAGTGGCGCCAAAA 58.916 47.619 34.66 23.07 0.00 2.44
101 102 1.003118 ACAAGAGATAGTGGCGCCAAA 59.997 47.619 34.66 23.48 0.00 3.28
102 103 0.613260 ACAAGAGATAGTGGCGCCAA 59.387 50.000 34.66 18.73 0.00 4.52
103 104 0.108186 CACAAGAGATAGTGGCGCCA 60.108 55.000 29.03 29.03 32.24 5.69
104 105 0.108138 ACACAAGAGATAGTGGCGCC 60.108 55.000 22.73 22.73 39.99 6.53
105 106 1.002366 CACACAAGAGATAGTGGCGC 58.998 55.000 0.00 0.00 39.99 6.53
106 107 1.645034 CCACACAAGAGATAGTGGCG 58.355 55.000 0.00 0.00 44.25 5.69
109 110 3.502920 GACGTCCACACAAGAGATAGTG 58.497 50.000 3.51 0.00 41.40 2.74
110 111 2.492484 GGACGTCCACACAAGAGATAGT 59.508 50.000 29.75 0.00 35.64 2.12
111 112 2.755655 AGGACGTCCACACAAGAGATAG 59.244 50.000 35.00 0.00 38.89 2.08
112 113 2.803956 AGGACGTCCACACAAGAGATA 58.196 47.619 35.00 0.00 38.89 1.98
113 114 1.633774 AGGACGTCCACACAAGAGAT 58.366 50.000 35.00 8.65 38.89 2.75
114 115 1.068588 CAAGGACGTCCACACAAGAGA 59.931 52.381 35.00 0.00 38.89 3.10
115 116 1.502231 CAAGGACGTCCACACAAGAG 58.498 55.000 35.00 11.96 38.89 2.85
116 117 0.531974 GCAAGGACGTCCACACAAGA 60.532 55.000 35.00 0.00 38.89 3.02
117 118 0.532862 AGCAAGGACGTCCACACAAG 60.533 55.000 35.00 18.11 38.89 3.16
118 119 0.813610 CAGCAAGGACGTCCACACAA 60.814 55.000 35.00 0.00 38.89 3.33
119 120 1.227527 CAGCAAGGACGTCCACACA 60.228 57.895 35.00 0.00 38.89 3.72
120 121 1.227556 ACAGCAAGGACGTCCACAC 60.228 57.895 35.00 22.58 38.89 3.82
121 122 1.227527 CACAGCAAGGACGTCCACA 60.228 57.895 35.00 0.00 38.89 4.17
122 123 2.607892 GCACAGCAAGGACGTCCAC 61.608 63.158 35.00 23.29 38.89 4.02
123 124 2.280797 GCACAGCAAGGACGTCCA 60.281 61.111 35.00 0.00 38.89 4.02
124 125 3.050275 GGCACAGCAAGGACGTCC 61.050 66.667 27.67 27.67 0.00 4.79
125 126 3.050275 GGGCACAGCAAGGACGTC 61.050 66.667 7.13 7.13 0.00 4.34
126 127 3.196207 ATGGGCACAGCAAGGACGT 62.196 57.895 0.00 0.00 0.00 4.34
127 128 2.360350 ATGGGCACAGCAAGGACG 60.360 61.111 0.00 0.00 0.00 4.79
128 129 2.998279 GCATGGGCACAGCAAGGAC 61.998 63.158 0.00 0.00 40.72 3.85
129 130 2.677524 GCATGGGCACAGCAAGGA 60.678 61.111 0.00 0.00 40.72 3.36
130 131 3.766691 GGCATGGGCACAGCAAGG 61.767 66.667 11.64 0.00 43.71 3.61
131 132 2.992689 TGGCATGGGCACAGCAAG 60.993 61.111 11.64 0.00 43.71 4.01
132 133 2.423382 TACTGGCATGGGCACAGCAA 62.423 55.000 11.64 0.66 43.71 3.91
133 134 2.214122 ATACTGGCATGGGCACAGCA 62.214 55.000 11.64 0.00 43.71 4.41
134 135 1.454479 ATACTGGCATGGGCACAGC 60.454 57.895 0.00 0.00 43.71 4.40
135 136 0.394762 ACATACTGGCATGGGCACAG 60.395 55.000 0.00 0.00 43.71 3.66
136 137 0.394216 GACATACTGGCATGGGCACA 60.394 55.000 0.00 0.00 43.71 4.57
137 138 0.107017 AGACATACTGGCATGGGCAC 60.107 55.000 0.00 0.00 43.71 5.01
138 139 0.625316 AAGACATACTGGCATGGGCA 59.375 50.000 0.00 0.00 43.71 5.36
139 140 1.767759 AAAGACATACTGGCATGGGC 58.232 50.000 0.00 0.00 40.13 5.36
173 174 9.476202 GGCACACTTTCTAGTTTTTCATTTATT 57.524 29.630 0.00 0.00 30.26 1.40
174 175 8.860088 AGGCACACTTTCTAGTTTTTCATTTAT 58.140 29.630 0.00 0.00 30.26 1.40
175 176 8.232913 AGGCACACTTTCTAGTTTTTCATTTA 57.767 30.769 0.00 0.00 30.26 1.40
176 177 7.112452 AGGCACACTTTCTAGTTTTTCATTT 57.888 32.000 0.00 0.00 30.26 2.32
177 178 6.715347 AGGCACACTTTCTAGTTTTTCATT 57.285 33.333 0.00 0.00 30.26 2.57
178 179 6.547510 AGAAGGCACACTTTCTAGTTTTTCAT 59.452 34.615 0.00 0.00 40.21 2.57
179 180 5.885912 AGAAGGCACACTTTCTAGTTTTTCA 59.114 36.000 0.00 0.00 40.21 2.69
180 181 6.378710 AGAAGGCACACTTTCTAGTTTTTC 57.621 37.500 0.00 0.00 40.21 2.29
181 182 7.875327 TTAGAAGGCACACTTTCTAGTTTTT 57.125 32.000 0.00 0.00 40.21 1.94
182 183 7.875327 TTTAGAAGGCACACTTTCTAGTTTT 57.125 32.000 0.00 0.00 40.21 2.43
183 184 8.465273 AATTTAGAAGGCACACTTTCTAGTTT 57.535 30.769 0.00 0.00 40.21 2.66
184 185 8.352942 CAAATTTAGAAGGCACACTTTCTAGTT 58.647 33.333 0.00 0.00 40.21 2.24
185 186 7.040409 CCAAATTTAGAAGGCACACTTTCTAGT 60.040 37.037 0.00 0.00 40.21 2.57
186 187 7.040409 ACCAAATTTAGAAGGCACACTTTCTAG 60.040 37.037 0.00 0.00 40.21 2.43
187 188 6.775629 ACCAAATTTAGAAGGCACACTTTCTA 59.224 34.615 0.00 0.00 40.21 2.10
188 189 5.598417 ACCAAATTTAGAAGGCACACTTTCT 59.402 36.000 0.00 0.00 40.21 2.52
189 190 5.842907 ACCAAATTTAGAAGGCACACTTTC 58.157 37.500 0.00 0.00 40.21 2.62
190 191 5.869649 ACCAAATTTAGAAGGCACACTTT 57.130 34.783 0.00 0.00 40.21 2.66
191 192 5.362430 TGAACCAAATTTAGAAGGCACACTT 59.638 36.000 0.00 0.00 43.65 3.16
192 193 4.892934 TGAACCAAATTTAGAAGGCACACT 59.107 37.500 0.00 0.00 0.00 3.55
193 194 5.195001 TGAACCAAATTTAGAAGGCACAC 57.805 39.130 0.00 0.00 0.00 3.82
194 195 5.782047 CATGAACCAAATTTAGAAGGCACA 58.218 37.500 0.00 0.00 0.00 4.57
195 196 4.627035 GCATGAACCAAATTTAGAAGGCAC 59.373 41.667 0.00 0.00 0.00 5.01
196 197 4.322650 GGCATGAACCAAATTTAGAAGGCA 60.323 41.667 0.00 0.00 0.00 4.75
197 198 4.183865 GGCATGAACCAAATTTAGAAGGC 58.816 43.478 0.00 0.00 0.00 4.35
198 199 5.404466 TGGCATGAACCAAATTTAGAAGG 57.596 39.130 0.00 0.00 36.55 3.46
199 200 7.546358 TGTATGGCATGAACCAAATTTAGAAG 58.454 34.615 10.98 0.00 44.65 2.85
200 201 7.473735 TGTATGGCATGAACCAAATTTAGAA 57.526 32.000 10.98 0.00 44.65 2.10
201 202 7.473735 TTGTATGGCATGAACCAAATTTAGA 57.526 32.000 10.98 0.00 44.65 2.10
202 203 8.545229 TTTTGTATGGCATGAACCAAATTTAG 57.455 30.769 10.98 0.00 44.65 1.85
204 205 7.999450 ATTTTGTATGGCATGAACCAAATTT 57.001 28.000 10.98 3.05 44.65 1.82
205 206 9.683870 ATTATTTTGTATGGCATGAACCAAATT 57.316 25.926 10.98 11.57 44.65 1.82
262 263 8.100164 CCACCTAACCAATTAACCAATTTGAAT 58.900 33.333 0.00 0.00 31.82 2.57
263 264 7.290248 TCCACCTAACCAATTAACCAATTTGAA 59.710 33.333 0.00 0.00 31.82 2.69
264 265 6.782988 TCCACCTAACCAATTAACCAATTTGA 59.217 34.615 0.00 0.00 31.82 2.69
265 266 6.998802 TCCACCTAACCAATTAACCAATTTG 58.001 36.000 0.00 0.00 31.82 2.32
266 267 7.619512 TTCCACCTAACCAATTAACCAATTT 57.380 32.000 0.00 0.00 31.82 1.82
267 268 7.071321 TGTTTCCACCTAACCAATTAACCAATT 59.929 33.333 0.00 0.00 34.60 2.32
268 269 6.555360 TGTTTCCACCTAACCAATTAACCAAT 59.445 34.615 0.00 0.00 0.00 3.16
269 270 5.897824 TGTTTCCACCTAACCAATTAACCAA 59.102 36.000 0.00 0.00 0.00 3.67
270 271 5.455872 TGTTTCCACCTAACCAATTAACCA 58.544 37.500 0.00 0.00 0.00 3.67
271 272 6.599356 ATGTTTCCACCTAACCAATTAACC 57.401 37.500 0.00 0.00 0.00 2.85
318 319 8.721019 AGATTGAAGCATGAAAGAAACAAAAA 57.279 26.923 0.00 0.00 0.00 1.94
319 320 8.605746 CAAGATTGAAGCATGAAAGAAACAAAA 58.394 29.630 0.00 0.00 0.00 2.44
320 321 7.980662 TCAAGATTGAAGCATGAAAGAAACAAA 59.019 29.630 0.00 0.00 33.55 2.83
321 322 7.490840 TCAAGATTGAAGCATGAAAGAAACAA 58.509 30.769 0.00 0.00 33.55 2.83
322 323 7.041635 TCAAGATTGAAGCATGAAAGAAACA 57.958 32.000 0.00 0.00 33.55 2.83
323 324 7.935338 TTCAAGATTGAAGCATGAAAGAAAC 57.065 32.000 0.00 0.00 41.88 2.78
324 325 8.984764 CATTTCAAGATTGAAGCATGAAAGAAA 58.015 29.630 16.90 0.00 46.68 2.52
325 326 8.361889 TCATTTCAAGATTGAAGCATGAAAGAA 58.638 29.630 16.90 6.95 46.68 2.52
326 327 7.888424 TCATTTCAAGATTGAAGCATGAAAGA 58.112 30.769 16.90 12.09 46.68 2.52
327 328 8.528917 TTCATTTCAAGATTGAAGCATGAAAG 57.471 30.769 21.73 10.45 43.84 2.62
328 329 9.496873 AATTCATTTCAAGATTGAAGCATGAAA 57.503 25.926 24.83 14.76 46.47 2.69
329 330 8.931775 CAATTCATTTCAAGATTGAAGCATGAA 58.068 29.630 24.01 24.01 46.89 2.57
330 331 8.092068 ACAATTCATTTCAAGATTGAAGCATGA 58.908 29.630 14.39 14.39 46.68 3.07
331 332 8.251750 ACAATTCATTTCAAGATTGAAGCATG 57.748 30.769 7.95 9.87 46.68 4.06
332 333 8.842358 AACAATTCATTTCAAGATTGAAGCAT 57.158 26.923 7.95 0.00 46.68 3.79
333 334 7.927092 TGAACAATTCATTTCAAGATTGAAGCA 59.073 29.630 7.95 0.00 40.34 3.91
334 335 8.301730 TGAACAATTCATTTCAAGATTGAAGC 57.698 30.769 7.95 0.00 40.34 3.86
337 338 9.984190 TCATTGAACAATTCATTTCAAGATTGA 57.016 25.926 10.56 7.77 43.21 2.57
340 341 9.431887 CCTTCATTGAACAATTCATTTCAAGAT 57.568 29.630 10.56 0.00 43.21 2.40
341 342 8.640651 TCCTTCATTGAACAATTCATTTCAAGA 58.359 29.630 10.56 6.94 43.21 3.02
342 343 8.821147 TCCTTCATTGAACAATTCATTTCAAG 57.179 30.769 10.56 5.43 43.21 3.02
343 344 9.210329 CATCCTTCATTGAACAATTCATTTCAA 57.790 29.630 8.23 8.23 43.89 2.69
344 345 7.332430 GCATCCTTCATTGAACAATTCATTTCA 59.668 33.333 0.00 0.00 39.84 2.69
345 346 7.332430 TGCATCCTTCATTGAACAATTCATTTC 59.668 33.333 0.00 0.00 39.84 2.17
346 347 7.118680 GTGCATCCTTCATTGAACAATTCATTT 59.881 33.333 0.00 0.00 39.84 2.32
347 348 6.592607 GTGCATCCTTCATTGAACAATTCATT 59.407 34.615 0.00 0.00 39.84 2.57
348 349 6.103997 GTGCATCCTTCATTGAACAATTCAT 58.896 36.000 0.00 0.00 39.84 2.57
349 350 5.010820 TGTGCATCCTTCATTGAACAATTCA 59.989 36.000 0.00 0.00 38.04 2.57
350 351 5.472148 TGTGCATCCTTCATTGAACAATTC 58.528 37.500 0.00 0.00 28.29 2.17
351 352 5.471556 TGTGCATCCTTCATTGAACAATT 57.528 34.783 0.00 0.00 28.29 2.32
352 353 5.046878 ACATGTGCATCCTTCATTGAACAAT 60.047 36.000 0.00 0.00 35.09 2.71
353 354 4.281435 ACATGTGCATCCTTCATTGAACAA 59.719 37.500 0.00 0.00 35.09 2.83
354 355 3.827876 ACATGTGCATCCTTCATTGAACA 59.172 39.130 0.00 0.00 35.88 3.18
355 356 4.082625 TCACATGTGCATCCTTCATTGAAC 60.083 41.667 21.38 0.00 0.00 3.18
356 357 4.080687 TCACATGTGCATCCTTCATTGAA 58.919 39.130 21.38 0.00 0.00 2.69
357 358 3.688235 TCACATGTGCATCCTTCATTGA 58.312 40.909 21.38 0.00 0.00 2.57
358 359 4.097286 TGATCACATGTGCATCCTTCATTG 59.903 41.667 21.38 0.00 0.00 2.82
359 360 4.274978 TGATCACATGTGCATCCTTCATT 58.725 39.130 21.38 0.00 0.00 2.57
360 361 3.893521 TGATCACATGTGCATCCTTCAT 58.106 40.909 21.38 6.54 0.00 2.57
361 362 3.353370 TGATCACATGTGCATCCTTCA 57.647 42.857 21.38 12.63 0.00 3.02
362 363 4.579340 AGATTGATCACATGTGCATCCTTC 59.421 41.667 21.38 18.96 0.00 3.46
363 364 4.533815 AGATTGATCACATGTGCATCCTT 58.466 39.130 21.38 13.13 0.00 3.36
364 365 4.166246 AGATTGATCACATGTGCATCCT 57.834 40.909 21.38 13.03 0.00 3.24
365 366 4.337274 TCAAGATTGATCACATGTGCATCC 59.663 41.667 21.38 9.80 31.01 3.51
366 367 5.494632 TCAAGATTGATCACATGTGCATC 57.505 39.130 21.38 21.51 31.01 3.91
367 368 5.907866 TTCAAGATTGATCACATGTGCAT 57.092 34.783 21.38 14.65 37.00 3.96
368 369 5.708877 TTTCAAGATTGATCACATGTGCA 57.291 34.783 21.38 11.38 37.00 4.57
369 370 8.692110 TTTATTTCAAGATTGATCACATGTGC 57.308 30.769 21.38 8.71 37.00 4.57
386 387 9.378551 ACGTCTCAACTAATGCTATTTATTTCA 57.621 29.630 0.00 0.00 0.00 2.69
387 388 9.638300 CACGTCTCAACTAATGCTATTTATTTC 57.362 33.333 0.00 0.00 0.00 2.17
388 389 8.122952 GCACGTCTCAACTAATGCTATTTATTT 58.877 33.333 0.00 0.00 0.00 1.40
389 390 7.279981 TGCACGTCTCAACTAATGCTATTTATT 59.720 33.333 0.00 0.00 34.18 1.40
390 391 6.761242 TGCACGTCTCAACTAATGCTATTTAT 59.239 34.615 0.00 0.00 34.18 1.40
391 392 6.103330 TGCACGTCTCAACTAATGCTATTTA 58.897 36.000 0.00 0.00 34.18 1.40
392 393 4.935205 TGCACGTCTCAACTAATGCTATTT 59.065 37.500 0.00 0.00 34.18 1.40
393 394 4.503910 TGCACGTCTCAACTAATGCTATT 58.496 39.130 0.00 0.00 34.18 1.73
394 395 4.123497 TGCACGTCTCAACTAATGCTAT 57.877 40.909 0.00 0.00 34.18 2.97
395 396 3.586100 TGCACGTCTCAACTAATGCTA 57.414 42.857 0.00 0.00 34.18 3.49
396 397 2.455674 TGCACGTCTCAACTAATGCT 57.544 45.000 0.00 0.00 34.18 3.79
397 398 3.419915 CAATGCACGTCTCAACTAATGC 58.580 45.455 0.00 0.00 0.00 3.56
398 399 3.120234 TGCAATGCACGTCTCAACTAATG 60.120 43.478 2.72 0.00 31.71 1.90
399 400 3.073678 TGCAATGCACGTCTCAACTAAT 58.926 40.909 2.72 0.00 31.71 1.73
400 401 2.488952 TGCAATGCACGTCTCAACTAA 58.511 42.857 2.72 0.00 31.71 2.24
401 402 2.162319 TGCAATGCACGTCTCAACTA 57.838 45.000 2.72 0.00 31.71 2.24
402 403 3.005205 TGCAATGCACGTCTCAACT 57.995 47.368 2.72 0.00 31.71 3.16
418 419 4.270084 TCTTAATAGTAAGCATGCACGTGC 59.730 41.667 33.11 33.11 45.38 5.34
419 420 5.966636 TCTTAATAGTAAGCATGCACGTG 57.033 39.130 21.98 12.28 37.27 4.49
420 421 7.553881 AATTCTTAATAGTAAGCATGCACGT 57.446 32.000 21.98 7.14 37.27 4.49
421 422 9.929722 TTTAATTCTTAATAGTAAGCATGCACG 57.070 29.630 21.98 0.00 37.27 5.34
443 444 8.455682 CCGTTTCTATATGCAAGTCCTTTTTAA 58.544 33.333 0.00 0.00 0.00 1.52
444 445 7.825270 TCCGTTTCTATATGCAAGTCCTTTTTA 59.175 33.333 0.00 0.00 0.00 1.52
445 446 6.657541 TCCGTTTCTATATGCAAGTCCTTTTT 59.342 34.615 0.00 0.00 0.00 1.94
446 447 6.177610 TCCGTTTCTATATGCAAGTCCTTTT 58.822 36.000 0.00 0.00 0.00 2.27
447 448 5.741011 TCCGTTTCTATATGCAAGTCCTTT 58.259 37.500 0.00 0.00 0.00 3.11
448 449 5.353394 TCCGTTTCTATATGCAAGTCCTT 57.647 39.130 0.00 0.00 0.00 3.36
449 450 5.104900 AGTTCCGTTTCTATATGCAAGTCCT 60.105 40.000 0.00 0.00 0.00 3.85
450 451 5.116882 AGTTCCGTTTCTATATGCAAGTCC 58.883 41.667 0.00 0.00 0.00 3.85
451 452 6.092259 ACAAGTTCCGTTTCTATATGCAAGTC 59.908 38.462 0.00 0.00 0.00 3.01
452 453 5.938125 ACAAGTTCCGTTTCTATATGCAAGT 59.062 36.000 0.00 0.00 0.00 3.16
453 454 6.422776 ACAAGTTCCGTTTCTATATGCAAG 57.577 37.500 0.00 0.00 0.00 4.01
454 455 5.062934 CGACAAGTTCCGTTTCTATATGCAA 59.937 40.000 0.00 0.00 0.00 4.08
455 456 4.565166 CGACAAGTTCCGTTTCTATATGCA 59.435 41.667 0.00 0.00 0.00 3.96
456 457 4.550255 GCGACAAGTTCCGTTTCTATATGC 60.550 45.833 0.00 0.00 0.00 3.14
457 458 4.804139 AGCGACAAGTTCCGTTTCTATATG 59.196 41.667 0.00 0.00 0.00 1.78
458 459 5.007385 AGCGACAAGTTCCGTTTCTATAT 57.993 39.130 0.00 0.00 0.00 0.86
459 460 4.445452 AGCGACAAGTTCCGTTTCTATA 57.555 40.909 0.00 0.00 0.00 1.31
460 461 3.314541 AGCGACAAGTTCCGTTTCTAT 57.685 42.857 0.00 0.00 0.00 1.98
609 610 2.409651 CTACGAGCCGAGGTCTGC 59.590 66.667 1.50 0.00 0.00 4.26
610 611 2.482333 CCCTACGAGCCGAGGTCTG 61.482 68.421 1.50 0.00 0.00 3.51
611 612 2.124236 CCCTACGAGCCGAGGTCT 60.124 66.667 1.50 0.00 0.00 3.85
612 613 3.902086 GCCCTACGAGCCGAGGTC 61.902 72.222 1.50 0.00 0.00 3.85
858 862 2.203182 TCCTCCACCCTCACCGTT 59.797 61.111 0.00 0.00 0.00 4.44
978 982 4.899352 AAGCTCATAGTTCTTGTGACCT 57.101 40.909 0.00 0.00 0.00 3.85
1080 1137 3.585862 TCTGATTCTTAGACAACCGCAC 58.414 45.455 0.00 0.00 0.00 5.34
1278 1335 6.208007 ACATTGTCTGAAATCTCATGCTTTCA 59.792 34.615 13.65 13.65 38.64 2.69
1303 1360 8.788806 AGAAACACGAATATACATTTGTTGGAA 58.211 29.630 0.00 0.00 36.75 3.53
1358 1543 3.003275 GCACGTTGTCTTTTCATTCTGGA 59.997 43.478 0.00 0.00 0.00 3.86
1376 1570 1.917303 GTGGAGTTGTGTTTTTGCACG 59.083 47.619 0.00 0.00 41.94 5.34
1390 1584 0.905337 GGGTGCTCTAGGTGTGGAGT 60.905 60.000 0.00 0.00 33.81 3.85
1468 1662 4.080751 AGCCATCAAATTGCAATTAGCCTT 60.081 37.500 24.35 6.29 44.83 4.35
1469 1663 3.453353 AGCCATCAAATTGCAATTAGCCT 59.547 39.130 24.35 6.68 44.83 4.58
1592 1786 4.225984 CGAGATGAAGTACAGCTATCTGC 58.774 47.826 0.00 0.00 45.71 4.26
1593 1787 4.320861 CCCGAGATGAAGTACAGCTATCTG 60.321 50.000 0.00 0.00 45.71 2.90
1594 1788 3.823873 CCCGAGATGAAGTACAGCTATCT 59.176 47.826 0.00 0.00 45.71 1.98
1595 1789 3.612955 GCCCGAGATGAAGTACAGCTATC 60.613 52.174 0.00 0.00 45.71 2.08
1596 1790 2.297597 GCCCGAGATGAAGTACAGCTAT 59.702 50.000 0.00 0.00 45.71 2.97
1727 1949 9.672673 GTTATGCCTCCATGTATATCTGTATTT 57.327 33.333 0.00 0.00 32.85 1.40
1762 1984 6.643360 ACGTATTTTGCCCTGAAAATTTACAC 59.357 34.615 0.00 0.00 36.94 2.90
1769 1991 4.920640 TCAACGTATTTTGCCCTGAAAA 57.079 36.364 0.00 0.00 0.00 2.29
1770 1992 4.920640 TTCAACGTATTTTGCCCTGAAA 57.079 36.364 0.00 0.00 0.00 2.69
1813 2035 6.269769 TCATCTGTTAAAAAGCCCCAGATTTT 59.730 34.615 0.00 0.00 43.19 1.82
1830 2052 5.723887 GGGAGGATGGATAGTATCATCTGTT 59.276 44.000 12.19 4.42 39.57 3.16
1834 2056 4.653341 CCTGGGAGGATGGATAGTATCATC 59.347 50.000 12.19 11.64 37.67 2.92
1844 2066 2.080536 CATGGCCTGGGAGGATGGA 61.081 63.158 3.32 0.00 37.67 3.41
1845 2067 1.648302 TTCATGGCCTGGGAGGATGG 61.648 60.000 3.32 0.00 37.67 3.51
2027 2251 0.106149 AGAACGGTCGTTTGGCTCTT 59.894 50.000 10.15 0.00 38.60 2.85
2042 2266 3.628646 ATGTGCGGGCTGGGAGAAC 62.629 63.158 0.00 0.00 0.00 3.01
2154 2379 5.904362 AAGTTAGAAAGACATGGCATTCC 57.096 39.130 12.82 0.00 0.00 3.01
2239 2473 5.521372 TGATGACTTCAGATCAAGCGTAATG 59.479 40.000 0.00 0.00 0.00 1.90
2446 2706 4.459390 TGTCCTGCAATTCATTTCATGG 57.541 40.909 0.00 0.00 0.00 3.66
2884 3156 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2885 3157 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2886 3158 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2887 3159 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2888 3160 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2889 3161 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2890 3162 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2899 3171 9.080097 AGGTAGTGATCTAAACGCTCTTATATT 57.920 33.333 0.00 0.00 0.00 1.28
2900 3172 8.638629 AGGTAGTGATCTAAACGCTCTTATAT 57.361 34.615 0.00 0.00 0.00 0.86
2901 3173 8.461249 AAGGTAGTGATCTAAACGCTCTTATA 57.539 34.615 0.00 0.00 0.00 0.98
2902 3174 6.963083 AGGTAGTGATCTAAACGCTCTTAT 57.037 37.500 0.00 0.00 0.00 1.73
2903 3175 6.770746 AAGGTAGTGATCTAAACGCTCTTA 57.229 37.500 0.00 0.00 0.00 2.10
2904 3176 5.662674 AAGGTAGTGATCTAAACGCTCTT 57.337 39.130 0.00 0.00 0.00 2.85
2905 3177 5.887035 ACTAAGGTAGTGATCTAAACGCTCT 59.113 40.000 0.00 0.00 37.69 4.09
2906 3178 6.134040 ACTAAGGTAGTGATCTAAACGCTC 57.866 41.667 0.00 0.00 37.69 5.03
2919 3191 7.964666 AGAGCTTTTAGATCACTAAGGTAGT 57.035 36.000 0.00 0.00 39.36 2.73
2937 3209 9.435570 TCCCTCTGTAAACTAATATAAGAGCTT 57.564 33.333 0.00 0.00 0.00 3.74
2938 3210 9.084533 CTCCCTCTGTAAACTAATATAAGAGCT 57.915 37.037 0.00 0.00 0.00 4.09
2939 3211 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2945 3217 9.710818 TCAAGTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
2946 3218 9.710818 ATCAAGTACTCCCTCTGTAAACTAATA 57.289 33.333 0.00 0.00 0.00 0.98
2947 3219 8.611051 ATCAAGTACTCCCTCTGTAAACTAAT 57.389 34.615 0.00 0.00 0.00 1.73
2948 3220 9.537852 TTATCAAGTACTCCCTCTGTAAACTAA 57.462 33.333 0.00 0.00 0.00 2.24
2949 3221 9.186837 CTTATCAAGTACTCCCTCTGTAAACTA 57.813 37.037 0.00 0.00 0.00 2.24
2950 3222 7.363968 GCTTATCAAGTACTCCCTCTGTAAACT 60.364 40.741 0.00 0.00 0.00 2.66
2951 3223 6.757478 GCTTATCAAGTACTCCCTCTGTAAAC 59.243 42.308 0.00 0.00 0.00 2.01
2952 3224 6.668283 AGCTTATCAAGTACTCCCTCTGTAAA 59.332 38.462 0.00 0.00 0.00 2.01
2953 3225 6.195700 AGCTTATCAAGTACTCCCTCTGTAA 58.804 40.000 0.00 0.00 0.00 2.41
2954 3226 5.767670 AGCTTATCAAGTACTCCCTCTGTA 58.232 41.667 0.00 0.00 0.00 2.74
2955 3227 4.615513 AGCTTATCAAGTACTCCCTCTGT 58.384 43.478 0.00 0.00 0.00 3.41
2956 3228 5.105146 ACAAGCTTATCAAGTACTCCCTCTG 60.105 44.000 0.00 0.00 0.00 3.35
2957 3229 5.026790 ACAAGCTTATCAAGTACTCCCTCT 58.973 41.667 0.00 0.00 0.00 3.69
2958 3230 5.346181 ACAAGCTTATCAAGTACTCCCTC 57.654 43.478 0.00 0.00 0.00 4.30
2959 3231 6.869206 TTACAAGCTTATCAAGTACTCCCT 57.131 37.500 0.00 0.00 0.00 4.20
2960 3232 7.048512 ACATTACAAGCTTATCAAGTACTCCC 58.951 38.462 0.00 0.00 0.00 4.30
2961 3233 9.765795 ATACATTACAAGCTTATCAAGTACTCC 57.234 33.333 0.00 0.00 0.00 3.85
2963 3235 9.046296 GCATACATTACAAGCTTATCAAGTACT 57.954 33.333 0.00 0.00 0.00 2.73
2964 3236 8.283291 GGCATACATTACAAGCTTATCAAGTAC 58.717 37.037 0.00 0.00 0.00 2.73
2965 3237 8.210946 AGGCATACATTACAAGCTTATCAAGTA 58.789 33.333 0.00 0.61 0.00 2.24
2966 3238 7.012704 CAGGCATACATTACAAGCTTATCAAGT 59.987 37.037 0.00 0.00 0.00 3.16
3262 3534 8.319057 TCTGGATTAGCTGAGGAGTAAAAATA 57.681 34.615 0.00 0.00 0.00 1.40
3274 3546 6.540189 GCAGATTTAACTTCTGGATTAGCTGA 59.460 38.462 13.72 0.00 40.77 4.26
3299 3571 2.140065 TGTCGACTTGTCTGCTTCAG 57.860 50.000 17.92 0.00 0.00 3.02
3588 3861 7.166691 AGAGCAACAATGATGAGCTTTTAAT 57.833 32.000 0.00 0.00 39.98 1.40
3590 3863 6.579666 AAGAGCAACAATGATGAGCTTTTA 57.420 33.333 0.00 0.00 39.98 1.52
3593 3866 6.376299 TGAATAAGAGCAACAATGATGAGCTT 59.624 34.615 0.00 0.00 39.98 3.74
3594 3867 5.884232 TGAATAAGAGCAACAATGATGAGCT 59.116 36.000 0.00 0.00 41.60 4.09
3595 3868 5.970023 GTGAATAAGAGCAACAATGATGAGC 59.030 40.000 0.00 0.00 0.00 4.26
3596 3869 7.080353 TGTGAATAAGAGCAACAATGATGAG 57.920 36.000 0.00 0.00 0.00 2.90
3597 3870 7.451501 TTGTGAATAAGAGCAACAATGATGA 57.548 32.000 0.00 0.00 0.00 2.92
3953 4227 5.864418 ATGAAGGGAATGGACAAATGATG 57.136 39.130 0.00 0.00 0.00 3.07
3981 4255 5.105023 AGCACCATATATCTCCAGCAGTATG 60.105 44.000 0.00 0.00 40.87 2.39
4683 4963 3.945346 TCTTTAAAGCGCCTGGAATACA 58.055 40.909 10.51 0.00 0.00 2.29
4720 5000 5.825593 TGTCTACCTTGTCTTCTTGGAAT 57.174 39.130 0.00 0.00 0.00 3.01
4753 5033 2.744760 AGGAGCTGCTGAGTCTCAATA 58.255 47.619 7.07 0.00 0.00 1.90
5066 5346 1.930100 CTGCGCTATGCTACACTGC 59.070 57.895 9.73 0.00 46.63 4.40
5159 5439 3.117131 AGGTGGTGGACAAAAGGATCTTT 60.117 43.478 0.00 0.00 0.00 2.52
5253 5533 0.460811 CAGCAGCATAGAAGCGTGGA 60.461 55.000 0.00 0.00 40.15 4.02
5391 5671 6.201517 CGTTTGTGATTAATTCAGCCATAGG 58.798 40.000 0.00 0.00 34.17 2.57
5397 5677 2.845967 CGGCGTTTGTGATTAATTCAGC 59.154 45.455 0.00 0.00 34.17 4.26
5517 5797 0.239347 CCTCAAAGCTCAGGTTTGCG 59.761 55.000 22.20 16.89 46.44 4.85
5545 5825 1.730064 CCACGTCAGTTATTTCCGGTG 59.270 52.381 0.00 0.00 0.00 4.94
5547 5827 2.088950 ACCACGTCAGTTATTTCCGG 57.911 50.000 0.00 0.00 0.00 5.14
5548 5828 4.477302 AAAACCACGTCAGTTATTTCCG 57.523 40.909 1.13 0.00 0.00 4.30
5550 5830 7.632721 TGAACTAAAACCACGTCAGTTATTTC 58.367 34.615 1.13 2.34 29.89 2.17
5551 5831 7.556733 TGAACTAAAACCACGTCAGTTATTT 57.443 32.000 1.13 0.00 29.89 1.40
5554 5834 6.282167 TGATGAACTAAAACCACGTCAGTTA 58.718 36.000 1.13 0.00 29.89 2.24
5555 5835 5.120399 TGATGAACTAAAACCACGTCAGTT 58.880 37.500 0.00 0.00 32.33 3.16
5556 5836 4.699637 TGATGAACTAAAACCACGTCAGT 58.300 39.130 0.00 0.00 0.00 3.41
5557 5837 4.750098 ACTGATGAACTAAAACCACGTCAG 59.250 41.667 0.00 0.00 44.81 3.51
5558 5838 4.699637 ACTGATGAACTAAAACCACGTCA 58.300 39.130 0.00 0.00 0.00 4.35
5559 5839 5.668558 AACTGATGAACTAAAACCACGTC 57.331 39.130 0.00 0.00 0.00 4.34
5560 5840 7.739498 AATAACTGATGAACTAAAACCACGT 57.261 32.000 0.00 0.00 0.00 4.49
5561 5841 7.749126 GGAAATAACTGATGAACTAAAACCACG 59.251 37.037 0.00 0.00 0.00 4.94
5562 5842 7.749126 CGGAAATAACTGATGAACTAAAACCAC 59.251 37.037 0.00 0.00 0.00 4.16
5563 5843 7.094549 CCGGAAATAACTGATGAACTAAAACCA 60.095 37.037 0.00 0.00 0.00 3.67
5564 5844 7.120138 TCCGGAAATAACTGATGAACTAAAACC 59.880 37.037 0.00 0.00 0.00 3.27
5589 5892 1.104630 CCTCTTGTACTCCCTCCGTC 58.895 60.000 0.00 0.00 0.00 4.79
5608 5911 4.816925 ACAAAGCTTCAGAAACCAGAGTAC 59.183 41.667 0.00 0.00 0.00 2.73
5661 5964 5.071923 CCTTCCTATCCTAAACCTACCCAAG 59.928 48.000 0.00 0.00 0.00 3.61
5678 5981 4.727332 TGATCTCACCTACTCTCCTTCCTA 59.273 45.833 0.00 0.00 0.00 2.94
5723 6026 2.592512 ACCCATTCTCCTTCCTCTCCTA 59.407 50.000 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.