Multiple sequence alignment - TraesCS4B01G151500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G151500 chr4B 100.000 3869 0 0 1 3869 243641935 243645803 0.000000e+00 7145
1 TraesCS4B01G151500 chr4B 90.625 352 31 1 3518 3869 630803793 630803444 2.110000e-127 466
2 TraesCS4B01G151500 chr6B 92.984 3549 198 23 1 3507 322070109 322073648 0.000000e+00 5127
3 TraesCS4B01G151500 chr2A 93.952 3092 157 19 1 3074 554434152 554431073 0.000000e+00 4647
4 TraesCS4B01G151500 chr2A 92.441 807 35 8 2499 3300 778138764 778139549 0.000000e+00 1129
5 TraesCS4B01G151500 chr2A 91.955 808 39 8 2499 3300 71076172 71076959 0.000000e+00 1109
6 TraesCS4B01G151500 chr2A 89.807 363 35 1 3507 3869 281216780 281216420 7.570000e-127 464
7 TraesCS4B01G151500 chr2A 86.914 405 44 8 3112 3509 554431087 554430685 2.740000e-121 446
8 TraesCS4B01G151500 chr6A 93.786 3090 163 18 1 3074 189411380 189408304 0.000000e+00 4615
9 TraesCS4B01G151500 chr6A 93.499 3092 172 19 1 3074 130943377 130940297 0.000000e+00 4569
10 TraesCS4B01G151500 chr6A 90.659 364 29 4 3507 3867 32182466 32182827 2.700000e-131 479
11 TraesCS4B01G151500 chr6A 85.644 404 47 9 3112 3507 189408318 189407918 7.730000e-112 414
12 TraesCS4B01G151500 chr6A 85.644 404 38 12 3112 3508 130940311 130939921 1.290000e-109 407
13 TraesCS4B01G151500 chr1A 93.683 3087 167 18 1 3071 522911478 522914552 0.000000e+00 4595
14 TraesCS4B01G151500 chr1A 85.360 403 50 8 3112 3507 522914541 522914941 3.600000e-110 409
15 TraesCS4B01G151500 chr5D 90.087 2744 241 24 1 2725 80810720 80813451 0.000000e+00 3531
16 TraesCS4B01G151500 chr5D 87.599 2653 295 24 1 2631 32805634 32808274 0.000000e+00 3046
17 TraesCS4B01G151500 chr5D 87.051 2703 317 27 1 2681 62075266 62072575 0.000000e+00 3022
18 TraesCS4B01G151500 chr4A 86.627 2707 323 32 1 2681 177528063 177525370 0.000000e+00 2957
19 TraesCS4B01G151500 chr4A 90.104 192 18 1 3317 3507 4007788 4007597 8.300000e-62 248
20 TraesCS4B01G151500 chr3A 92.680 806 35 8 2499 3300 694113078 694112293 0.000000e+00 1140
21 TraesCS4B01G151500 chr3A 92.079 808 36 10 2499 3300 502266293 502265508 0.000000e+00 1112
22 TraesCS4B01G151500 chr3A 90.859 361 30 2 3507 3867 355682143 355682500 7.520000e-132 481
23 TraesCS4B01G151500 chr3A 89.076 238 7 3 3064 3300 9919699 9919480 1.060000e-70 278
24 TraesCS4B01G151500 chr3A 91.753 194 15 1 3317 3509 694112311 694112118 6.370000e-68 268
25 TraesCS4B01G151500 chr3A 90.625 192 17 1 3317 3507 502265526 502265335 1.780000e-63 254
26 TraesCS4B01G151500 chr7A 92.565 807 35 8 2499 3300 679006409 679005623 0.000000e+00 1134
27 TraesCS4B01G151500 chr7A 91.945 807 39 9 2499 3300 714679741 714680526 0.000000e+00 1107
28 TraesCS4B01G151500 chr7A 91.453 351 27 2 3507 3857 143257392 143257739 2.700000e-131 479
29 TraesCS4B01G151500 chr7A 86.486 370 41 8 3144 3507 63482463 63482829 7.790000e-107 398
30 TraesCS4B01G151500 chr7A 91.146 192 16 1 3317 3507 714680508 714680699 3.830000e-65 259
31 TraesCS4B01G151500 chr1D 90.634 363 32 1 3507 3869 455471468 455471828 7.520000e-132 481
32 TraesCS4B01G151500 chr1D 90.659 364 27 5 3507 3869 92419764 92419407 9.730000e-131 477
33 TraesCS4B01G151500 chr2B 90.358 363 33 1 3507 3869 200849369 200849009 3.500000e-130 475
34 TraesCS4B01G151500 chr2D 89.751 361 34 2 3507 3867 392393603 392393246 3.520000e-125 459
35 TraesCS4B01G151500 chr5A 90.206 194 18 1 3317 3509 77755911 77756104 6.420000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G151500 chr4B 243641935 243645803 3868 False 7145.0 7145 100.0000 1 3869 1 chr4B.!!$F1 3868
1 TraesCS4B01G151500 chr6B 322070109 322073648 3539 False 5127.0 5127 92.9840 1 3507 1 chr6B.!!$F1 3506
2 TraesCS4B01G151500 chr2A 554430685 554434152 3467 True 2546.5 4647 90.4330 1 3509 2 chr2A.!!$R2 3508
3 TraesCS4B01G151500 chr2A 778138764 778139549 785 False 1129.0 1129 92.4410 2499 3300 1 chr2A.!!$F2 801
4 TraesCS4B01G151500 chr2A 71076172 71076959 787 False 1109.0 1109 91.9550 2499 3300 1 chr2A.!!$F1 801
5 TraesCS4B01G151500 chr6A 189407918 189411380 3462 True 2514.5 4615 89.7150 1 3507 2 chr6A.!!$R2 3506
6 TraesCS4B01G151500 chr6A 130939921 130943377 3456 True 2488.0 4569 89.5715 1 3508 2 chr6A.!!$R1 3507
7 TraesCS4B01G151500 chr1A 522911478 522914941 3463 False 2502.0 4595 89.5215 1 3507 2 chr1A.!!$F1 3506
8 TraesCS4B01G151500 chr5D 80810720 80813451 2731 False 3531.0 3531 90.0870 1 2725 1 chr5D.!!$F2 2724
9 TraesCS4B01G151500 chr5D 32805634 32808274 2640 False 3046.0 3046 87.5990 1 2631 1 chr5D.!!$F1 2630
10 TraesCS4B01G151500 chr5D 62072575 62075266 2691 True 3022.0 3022 87.0510 1 2681 1 chr5D.!!$R1 2680
11 TraesCS4B01G151500 chr4A 177525370 177528063 2693 True 2957.0 2957 86.6270 1 2681 1 chr4A.!!$R2 2680
12 TraesCS4B01G151500 chr3A 694112118 694113078 960 True 704.0 1140 92.2165 2499 3509 2 chr3A.!!$R3 1010
13 TraesCS4B01G151500 chr3A 502265335 502266293 958 True 683.0 1112 91.3520 2499 3507 2 chr3A.!!$R2 1008
14 TraesCS4B01G151500 chr7A 679005623 679006409 786 True 1134.0 1134 92.5650 2499 3300 1 chr7A.!!$R1 801
15 TraesCS4B01G151500 chr7A 714679741 714680699 958 False 683.0 1107 91.5455 2499 3507 2 chr7A.!!$F3 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.923358 AAACCACACCTCCCACTGAA 59.077 50.0 0.0 0.0 0.0 3.02 F
1573 1598 0.741915 TCGGGTTGTTGGCTGTTTTC 59.258 50.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2436 3.181423 ACCCCAGCAATTCAAGACCTTTA 60.181 43.478 0.0 0.0 0.0 1.85 R
3532 3616 0.175073 GGGTCTCAATAAGTCGCCGT 59.825 55.000 0.0 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 149 6.654161 CCCAAACCTGCAATTTAAATCATCAA 59.346 34.615 0.10 0.00 0.00 2.57
180 181 4.652822 ACACATTCAAAGTTCCTAGGACC 58.347 43.478 12.22 4.05 0.00 4.46
184 185 6.040391 CACATTCAAAGTTCCTAGGACCAAAA 59.960 38.462 12.22 2.03 0.00 2.44
242 243 3.500448 TGCTAACTGTCCCAACAATCA 57.500 42.857 0.00 0.00 34.24 2.57
334 335 9.809096 TCTCTGAACATAACTAGCTCTAATTTG 57.191 33.333 0.00 0.00 0.00 2.32
383 384 3.206150 TCTTTCGAAGAGCTTGCTTGTT 58.794 40.909 0.00 0.00 38.43 2.83
418 419 6.329496 TGTGAAGACATCAAGTTGAAAAACC 58.671 36.000 10.14 0.00 40.50 3.27
433 434 0.923358 AAACCACACCTCCCACTGAA 59.077 50.000 0.00 0.00 0.00 3.02
613 624 6.429385 ACAAAATTTTGCTTTCCACTGTTCAA 59.571 30.769 26.94 0.00 41.79 2.69
786 801 6.541278 TCATTGATGCTGAACTGGATAAAGAG 59.459 38.462 0.00 0.00 0.00 2.85
813 828 6.074409 TGTTGCTTGATGAAAATTTAGTTGCG 60.074 34.615 0.00 0.00 0.00 4.85
817 832 6.363357 GCTTGATGAAAATTTAGTTGCGTCTT 59.637 34.615 0.00 0.00 0.00 3.01
864 879 1.137675 GCCAATTCAAATGGAGAGGCC 59.862 52.381 0.00 0.00 40.56 5.19
887 902 5.394224 CCGGTACAGTCACTCAATATGAAGT 60.394 44.000 0.00 0.00 0.00 3.01
991 1006 2.818432 CAGTTCAGCCTCTCAGCAAATT 59.182 45.455 0.00 0.00 34.23 1.82
1008 1023 6.584942 CAGCAAATTAGTATAGCATGCATTGG 59.415 38.462 21.98 7.53 34.89 3.16
1028 1049 1.207570 GCATGCCAATCCCAATGTTCA 59.792 47.619 6.36 0.00 0.00 3.18
1036 1057 2.988636 TCCCAATGTTCATGGAACCA 57.011 45.000 6.64 0.00 41.35 3.67
1044 1065 1.075601 TTCATGGAACCAAGAGCCCT 58.924 50.000 0.00 0.00 0.00 5.19
1086 1107 4.569719 ATCACCGAAACTCTACCCAAAT 57.430 40.909 0.00 0.00 0.00 2.32
1097 1118 8.782137 AAACTCTACCCAAATAATATTGCCAT 57.218 30.769 0.00 0.00 0.00 4.40
1099 1120 9.520515 AACTCTACCCAAATAATATTGCCATAG 57.479 33.333 0.00 0.00 0.00 2.23
1327 1348 6.072119 GGTTGGACTACTTCCCAAATTAACTG 60.072 42.308 0.00 0.00 45.17 3.16
1348 1369 5.825679 ACTGTCAGGTATGTACAAAAAGCAA 59.174 36.000 0.00 0.00 0.00 3.91
1355 1376 8.863049 CAGGTATGTACAAAAAGCAAATGAATC 58.137 33.333 0.00 0.00 0.00 2.52
1387 1408 8.483218 GTGATATGTTCTACATGATTCGAACAG 58.517 37.037 19.72 0.00 45.91 3.16
1460 1485 9.730705 TCACTTTTCTTCATGATATTCTTCTGT 57.269 29.630 0.00 0.00 0.00 3.41
1515 1540 3.888930 GAGTTTGGGTGGATCAGAAAACA 59.111 43.478 0.00 0.00 31.53 2.83
1573 1598 0.741915 TCGGGTTGTTGGCTGTTTTC 59.258 50.000 0.00 0.00 0.00 2.29
1772 1802 3.069443 GGGAAACAAACATGCAGGAGAAA 59.931 43.478 4.84 0.00 0.00 2.52
1808 1838 3.811497 TGCTAAATCATTCAGATCCTGCG 59.189 43.478 0.00 0.00 35.39 5.18
2396 2436 7.275183 TCATTCTGCAGTATGTTAGCAAGTAT 58.725 34.615 26.55 0.00 39.31 2.12
2413 2453 6.660949 AGCAAGTATAAAGGTCTTGAATTGCT 59.339 34.615 15.76 15.76 40.35 3.91
2494 2537 7.989826 ACATATCAGGAATTAAACTGCACTTC 58.010 34.615 0.00 0.00 34.76 3.01
2582 2625 6.647334 TGCAAGGACAATGAAATTCAACTA 57.353 33.333 0.00 0.00 31.22 2.24
2620 2663 2.232696 TCCTGCAGCGACATGTAAGTTA 59.767 45.455 8.66 0.00 0.00 2.24
2671 2719 9.897744 CAAAAGAGATGTTATTTTCTTACAGCA 57.102 29.630 0.00 0.00 31.00 4.41
2778 2826 8.398665 GGTCTCATTAATATTGTCACCTTCAAC 58.601 37.037 0.00 0.00 0.00 3.18
2939 2992 8.947055 AAAACAGCTGAAACAGTTATGAAAAT 57.053 26.923 23.35 0.00 33.43 1.82
3134 3189 7.458397 AGTTGAATCAATAGGAACAACACCTA 58.542 34.615 0.00 0.00 43.16 3.08
3284 3358 7.829706 AGGAAAACAGAAGAAACAGTAGAAACT 59.170 33.333 0.00 0.00 35.91 2.66
3343 3426 2.099756 AGAAACAGTGGAAAACAGCAGC 59.900 45.455 0.00 0.00 0.00 5.25
3349 3432 0.463654 TGGAAAACAGCAGCGACAGT 60.464 50.000 0.00 0.00 0.00 3.55
3366 3449 3.668447 ACAGTAATCAGTGGAACAGCTG 58.332 45.455 13.48 13.48 41.80 4.24
3398 3482 4.333372 AGAAAAACGAAGCGGTAGAAACAA 59.667 37.500 0.00 0.00 0.00 2.83
3409 3493 5.010617 AGCGGTAGAAACAATTCAAAACCAT 59.989 36.000 0.00 0.00 38.06 3.55
3489 3573 2.930887 GCACCTACTTGACGCAGAATGA 60.931 50.000 0.00 0.00 39.69 2.57
3490 3574 3.325870 CACCTACTTGACGCAGAATGAA 58.674 45.455 0.00 0.00 39.69 2.57
3492 3576 3.935203 ACCTACTTGACGCAGAATGAATG 59.065 43.478 0.00 0.00 39.69 2.67
3509 3593 4.890988 TGAATGACATAGGAGTTCCCCTA 58.109 43.478 0.00 0.00 42.51 3.53
3511 3595 5.544176 TGAATGACATAGGAGTTCCCCTATC 59.456 44.000 0.00 0.00 45.27 2.08
3512 3596 3.858135 TGACATAGGAGTTCCCCTATCC 58.142 50.000 0.00 0.00 45.27 2.59
3513 3597 2.826725 GACATAGGAGTTCCCCTATCCG 59.173 54.545 0.00 0.00 45.27 4.18
3514 3598 2.180276 CATAGGAGTTCCCCTATCCGG 58.820 57.143 0.00 0.00 45.27 5.14
3515 3599 0.178941 TAGGAGTTCCCCTATCCGGC 60.179 60.000 0.00 0.00 38.20 6.13
3516 3600 1.764854 GGAGTTCCCCTATCCGGCA 60.765 63.158 0.00 0.00 0.00 5.69
3517 3601 1.128188 GGAGTTCCCCTATCCGGCAT 61.128 60.000 0.00 0.00 0.00 4.40
3518 3602 0.321996 GAGTTCCCCTATCCGGCATC 59.678 60.000 0.00 0.00 0.00 3.91
3519 3603 0.399949 AGTTCCCCTATCCGGCATCA 60.400 55.000 0.00 0.00 0.00 3.07
3520 3604 0.472471 GTTCCCCTATCCGGCATCAA 59.528 55.000 0.00 0.00 0.00 2.57
3521 3605 0.764890 TTCCCCTATCCGGCATCAAG 59.235 55.000 0.00 0.00 0.00 3.02
3522 3606 1.302832 CCCCTATCCGGCATCAAGC 60.303 63.158 0.00 0.00 44.65 4.01
3523 3607 1.757306 CCCTATCCGGCATCAAGCT 59.243 57.895 0.00 0.00 44.79 3.74
3524 3608 0.976641 CCCTATCCGGCATCAAGCTA 59.023 55.000 0.00 0.00 44.79 3.32
3525 3609 1.347707 CCCTATCCGGCATCAAGCTAA 59.652 52.381 0.00 0.00 44.79 3.09
3526 3610 2.026822 CCCTATCCGGCATCAAGCTAAT 60.027 50.000 0.00 0.00 44.79 1.73
3527 3611 3.197766 CCCTATCCGGCATCAAGCTAATA 59.802 47.826 0.00 0.00 44.79 0.98
3528 3612 4.141620 CCCTATCCGGCATCAAGCTAATAT 60.142 45.833 0.00 0.00 44.79 1.28
3529 3613 5.070446 CCCTATCCGGCATCAAGCTAATATA 59.930 44.000 0.00 0.00 44.79 0.86
3530 3614 6.239714 CCCTATCCGGCATCAAGCTAATATAT 60.240 42.308 0.00 0.00 44.79 0.86
3531 3615 7.220030 CCTATCCGGCATCAAGCTAATATATT 58.780 38.462 0.00 2.97 44.79 1.28
3532 3616 8.367911 CCTATCCGGCATCAAGCTAATATATTA 58.632 37.037 0.00 5.10 44.79 0.98
3533 3617 9.197694 CTATCCGGCATCAAGCTAATATATTAC 57.802 37.037 0.00 0.16 44.79 1.89
3534 3618 6.040247 TCCGGCATCAAGCTAATATATTACG 58.960 40.000 0.00 1.21 44.79 3.18
3535 3619 5.234329 CCGGCATCAAGCTAATATATTACGG 59.766 44.000 0.81 6.14 44.79 4.02
3536 3620 5.276868 CGGCATCAAGCTAATATATTACGGC 60.277 44.000 0.81 5.07 44.79 5.68
3537 3621 5.276868 GGCATCAAGCTAATATATTACGGCG 60.277 44.000 4.80 4.80 44.79 6.46
3538 3622 5.518847 GCATCAAGCTAATATATTACGGCGA 59.481 40.000 16.62 0.00 41.15 5.54
3539 3623 6.508088 GCATCAAGCTAATATATTACGGCGAC 60.508 42.308 16.62 0.00 41.15 5.19
3540 3624 6.263516 TCAAGCTAATATATTACGGCGACT 57.736 37.500 16.62 0.00 0.00 4.18
3541 3625 6.684686 TCAAGCTAATATATTACGGCGACTT 58.315 36.000 16.62 0.00 0.00 3.01
3542 3626 7.819644 TCAAGCTAATATATTACGGCGACTTA 58.180 34.615 16.62 1.50 0.00 2.24
3543 3627 8.464404 TCAAGCTAATATATTACGGCGACTTAT 58.536 33.333 16.62 9.50 0.00 1.73
3544 3628 9.084164 CAAGCTAATATATTACGGCGACTTATT 57.916 33.333 16.62 11.40 0.00 1.40
3545 3629 8.630278 AGCTAATATATTACGGCGACTTATTG 57.370 34.615 16.62 6.08 0.00 1.90
3546 3630 8.464404 AGCTAATATATTACGGCGACTTATTGA 58.536 33.333 16.62 0.00 0.00 2.57
3547 3631 8.744011 GCTAATATATTACGGCGACTTATTGAG 58.256 37.037 16.62 1.99 0.00 3.02
3548 3632 9.999009 CTAATATATTACGGCGACTTATTGAGA 57.001 33.333 16.62 0.00 0.00 3.27
3549 3633 8.684973 AATATATTACGGCGACTTATTGAGAC 57.315 34.615 16.62 0.00 0.00 3.36
3550 3634 2.857592 TACGGCGACTTATTGAGACC 57.142 50.000 16.62 0.00 0.00 3.85
3551 3635 0.175073 ACGGCGACTTATTGAGACCC 59.825 55.000 16.62 0.00 0.00 4.46
3552 3636 0.460311 CGGCGACTTATTGAGACCCT 59.540 55.000 0.00 0.00 0.00 4.34
3553 3637 1.536284 CGGCGACTTATTGAGACCCTC 60.536 57.143 0.00 0.00 0.00 4.30
3554 3638 1.757699 GGCGACTTATTGAGACCCTCT 59.242 52.381 0.00 0.00 0.00 3.69
3555 3639 2.223852 GGCGACTTATTGAGACCCTCTC 60.224 54.545 0.00 0.00 43.65 3.20
3556 3640 2.691011 GCGACTTATTGAGACCCTCTCT 59.309 50.000 1.14 0.00 43.73 3.10
3557 3641 3.243267 GCGACTTATTGAGACCCTCTCTC 60.243 52.174 1.14 0.00 43.73 3.20
3567 3651 2.685380 CCTCTCTCAAGGGCCCGT 60.685 66.667 18.44 11.44 32.35 5.28
3568 3652 2.726351 CCTCTCTCAAGGGCCCGTC 61.726 68.421 18.44 0.00 32.35 4.79
3569 3653 2.683933 TCTCTCAAGGGCCCGTCC 60.684 66.667 18.44 0.00 0.00 4.79
3570 3654 2.685380 CTCTCAAGGGCCCGTCCT 60.685 66.667 18.44 0.00 39.17 3.85
3571 3655 2.683933 TCTCAAGGGCCCGTCCTC 60.684 66.667 18.44 0.00 35.80 3.71
3572 3656 3.787001 CTCAAGGGCCCGTCCTCC 61.787 72.222 18.44 0.00 35.80 4.30
3573 3657 4.649705 TCAAGGGCCCGTCCTCCA 62.650 66.667 18.44 0.00 35.80 3.86
3574 3658 3.646715 CAAGGGCCCGTCCTCCAA 61.647 66.667 18.44 0.00 35.80 3.53
3575 3659 2.614013 AAGGGCCCGTCCTCCAAT 60.614 61.111 18.44 0.00 35.80 3.16
3576 3660 2.680370 AAGGGCCCGTCCTCCAATC 61.680 63.158 18.44 0.00 35.80 2.67
3577 3661 3.407967 GGGCCCGTCCTCCAATCA 61.408 66.667 5.69 0.00 34.39 2.57
3578 3662 2.124695 GGCCCGTCCTCCAATCAC 60.125 66.667 0.00 0.00 0.00 3.06
3579 3663 2.670148 GGCCCGTCCTCCAATCACT 61.670 63.158 0.00 0.00 0.00 3.41
3580 3664 1.335132 GGCCCGTCCTCCAATCACTA 61.335 60.000 0.00 0.00 0.00 2.74
3581 3665 0.179081 GCCCGTCCTCCAATCACTAC 60.179 60.000 0.00 0.00 0.00 2.73
3582 3666 0.464452 CCCGTCCTCCAATCACTACC 59.536 60.000 0.00 0.00 0.00 3.18
3583 3667 1.486211 CCGTCCTCCAATCACTACCT 58.514 55.000 0.00 0.00 0.00 3.08
3584 3668 1.409427 CCGTCCTCCAATCACTACCTC 59.591 57.143 0.00 0.00 0.00 3.85
3585 3669 1.409427 CGTCCTCCAATCACTACCTCC 59.591 57.143 0.00 0.00 0.00 4.30
3586 3670 2.753247 GTCCTCCAATCACTACCTCCT 58.247 52.381 0.00 0.00 0.00 3.69
3587 3671 2.696187 GTCCTCCAATCACTACCTCCTC 59.304 54.545 0.00 0.00 0.00 3.71
3588 3672 2.587777 TCCTCCAATCACTACCTCCTCT 59.412 50.000 0.00 0.00 0.00 3.69
3589 3673 3.792114 TCCTCCAATCACTACCTCCTCTA 59.208 47.826 0.00 0.00 0.00 2.43
3590 3674 4.232122 TCCTCCAATCACTACCTCCTCTAA 59.768 45.833 0.00 0.00 0.00 2.10
3591 3675 5.103043 TCCTCCAATCACTACCTCCTCTAAT 60.103 44.000 0.00 0.00 0.00 1.73
3592 3676 5.011533 CCTCCAATCACTACCTCCTCTAATG 59.988 48.000 0.00 0.00 0.00 1.90
3593 3677 5.529289 TCCAATCACTACCTCCTCTAATGT 58.471 41.667 0.00 0.00 0.00 2.71
3594 3678 5.363868 TCCAATCACTACCTCCTCTAATGTG 59.636 44.000 0.00 0.00 0.00 3.21
3595 3679 4.946478 ATCACTACCTCCTCTAATGTGC 57.054 45.455 0.00 0.00 0.00 4.57
3596 3680 3.708451 TCACTACCTCCTCTAATGTGCA 58.292 45.455 0.00 0.00 0.00 4.57
3597 3681 4.290093 TCACTACCTCCTCTAATGTGCAT 58.710 43.478 0.00 0.00 0.00 3.96
3598 3682 4.342378 TCACTACCTCCTCTAATGTGCATC 59.658 45.833 0.00 0.00 0.00 3.91
3599 3683 4.343526 CACTACCTCCTCTAATGTGCATCT 59.656 45.833 0.00 0.00 0.00 2.90
3600 3684 4.965532 ACTACCTCCTCTAATGTGCATCTT 59.034 41.667 0.00 0.00 0.00 2.40
3601 3685 4.148128 ACCTCCTCTAATGTGCATCTTG 57.852 45.455 0.00 0.00 0.00 3.02
3602 3686 3.118112 ACCTCCTCTAATGTGCATCTTGG 60.118 47.826 0.00 0.00 0.00 3.61
3603 3687 3.135348 CCTCCTCTAATGTGCATCTTGGA 59.865 47.826 0.00 0.00 0.00 3.53
3604 3688 4.202440 CCTCCTCTAATGTGCATCTTGGAT 60.202 45.833 0.00 0.00 0.00 3.41
3605 3689 5.374921 CTCCTCTAATGTGCATCTTGGATT 58.625 41.667 0.00 0.00 0.00 3.01
3606 3690 5.759059 TCCTCTAATGTGCATCTTGGATTT 58.241 37.500 0.00 0.00 0.00 2.17
3607 3691 6.189859 TCCTCTAATGTGCATCTTGGATTTT 58.810 36.000 0.00 0.00 0.00 1.82
3608 3692 7.345691 TCCTCTAATGTGCATCTTGGATTTTA 58.654 34.615 0.00 0.00 0.00 1.52
3609 3693 7.500227 TCCTCTAATGTGCATCTTGGATTTTAG 59.500 37.037 0.00 0.00 0.00 1.85
3610 3694 7.255381 CCTCTAATGTGCATCTTGGATTTTAGG 60.255 40.741 0.00 0.00 0.00 2.69
3611 3695 4.660789 ATGTGCATCTTGGATTTTAGGC 57.339 40.909 0.00 0.00 0.00 3.93
3612 3696 3.700538 TGTGCATCTTGGATTTTAGGCT 58.299 40.909 0.00 0.00 0.00 4.58
3613 3697 3.444742 TGTGCATCTTGGATTTTAGGCTG 59.555 43.478 0.00 0.00 0.00 4.85
3614 3698 3.696051 GTGCATCTTGGATTTTAGGCTGA 59.304 43.478 0.00 0.00 0.00 4.26
3615 3699 3.696051 TGCATCTTGGATTTTAGGCTGAC 59.304 43.478 0.00 0.00 0.00 3.51
3616 3700 3.696051 GCATCTTGGATTTTAGGCTGACA 59.304 43.478 0.00 0.00 0.00 3.58
3617 3701 4.439289 GCATCTTGGATTTTAGGCTGACAC 60.439 45.833 0.00 0.00 0.00 3.67
3618 3702 4.365514 TCTTGGATTTTAGGCTGACACA 57.634 40.909 0.00 0.00 0.00 3.72
3619 3703 4.072131 TCTTGGATTTTAGGCTGACACAC 58.928 43.478 0.00 0.00 0.00 3.82
3620 3704 3.500448 TGGATTTTAGGCTGACACACA 57.500 42.857 0.00 0.00 0.00 3.72
3621 3705 3.146066 TGGATTTTAGGCTGACACACAC 58.854 45.455 0.00 0.00 0.00 3.82
3622 3706 3.146066 GGATTTTAGGCTGACACACACA 58.854 45.455 0.00 0.00 0.00 3.72
3623 3707 3.058224 GGATTTTAGGCTGACACACACAC 60.058 47.826 0.00 0.00 0.00 3.82
3624 3708 2.700722 TTTAGGCTGACACACACACA 57.299 45.000 0.00 0.00 0.00 3.72
3625 3709 1.948104 TTAGGCTGACACACACACAC 58.052 50.000 0.00 0.00 0.00 3.82
3626 3710 0.105964 TAGGCTGACACACACACACC 59.894 55.000 0.00 0.00 0.00 4.16
3627 3711 1.153168 GGCTGACACACACACACCT 60.153 57.895 0.00 0.00 0.00 4.00
3628 3712 0.748005 GGCTGACACACACACACCTT 60.748 55.000 0.00 0.00 0.00 3.50
3629 3713 0.378257 GCTGACACACACACACCTTG 59.622 55.000 0.00 0.00 0.00 3.61
3630 3714 2.011548 GCTGACACACACACACCTTGA 61.012 52.381 0.00 0.00 0.00 3.02
3631 3715 1.935873 CTGACACACACACACCTTGAG 59.064 52.381 0.00 0.00 0.00 3.02
3632 3716 1.299541 GACACACACACACCTTGAGG 58.700 55.000 0.00 0.00 42.17 3.86
3633 3717 0.107214 ACACACACACACCTTGAGGG 60.107 55.000 1.54 0.00 40.27 4.30
3634 3718 1.152963 ACACACACACCTTGAGGGC 60.153 57.895 1.54 0.00 40.27 5.19
3635 3719 1.149174 CACACACACCTTGAGGGCT 59.851 57.895 1.54 0.00 40.27 5.19
3636 3720 0.396435 CACACACACCTTGAGGGCTA 59.604 55.000 1.54 0.00 40.27 3.93
3637 3721 1.136828 ACACACACCTTGAGGGCTAA 58.863 50.000 1.54 0.00 40.27 3.09
3638 3722 1.705186 ACACACACCTTGAGGGCTAAT 59.295 47.619 1.54 0.00 40.27 1.73
3639 3723 2.086869 CACACACCTTGAGGGCTAATG 58.913 52.381 1.54 0.00 40.27 1.90
3640 3724 1.004745 ACACACCTTGAGGGCTAATGG 59.995 52.381 1.54 0.00 40.27 3.16
3641 3725 0.034089 ACACCTTGAGGGCTAATGGC 60.034 55.000 1.54 0.00 40.27 4.40
3642 3726 0.257039 CACCTTGAGGGCTAATGGCT 59.743 55.000 1.54 0.00 41.46 4.75
3643 3727 1.490490 CACCTTGAGGGCTAATGGCTA 59.510 52.381 1.54 0.00 41.46 3.93
3644 3728 2.107204 CACCTTGAGGGCTAATGGCTAT 59.893 50.000 1.54 0.00 41.46 2.97
3645 3729 3.327757 CACCTTGAGGGCTAATGGCTATA 59.672 47.826 1.54 0.00 41.46 1.31
3646 3730 4.018960 CACCTTGAGGGCTAATGGCTATAT 60.019 45.833 1.54 0.00 41.46 0.86
3647 3731 5.189736 CACCTTGAGGGCTAATGGCTATATA 59.810 44.000 1.54 0.00 41.46 0.86
3648 3732 5.973124 ACCTTGAGGGCTAATGGCTATATAT 59.027 40.000 1.54 0.00 41.46 0.86
3649 3733 6.100424 ACCTTGAGGGCTAATGGCTATATATC 59.900 42.308 1.54 0.00 41.46 1.63
3650 3734 6.328672 CCTTGAGGGCTAATGGCTATATATCT 59.671 42.308 0.00 0.00 41.46 1.98
3651 3735 6.985653 TGAGGGCTAATGGCTATATATCTC 57.014 41.667 0.00 0.00 41.46 2.75
3652 3736 5.536538 TGAGGGCTAATGGCTATATATCTCG 59.463 44.000 0.00 0.00 41.46 4.04
3653 3737 5.459505 AGGGCTAATGGCTATATATCTCGT 58.540 41.667 0.00 0.00 41.46 4.18
3654 3738 5.536916 AGGGCTAATGGCTATATATCTCGTC 59.463 44.000 0.00 0.00 41.46 4.20
3655 3739 5.302059 GGGCTAATGGCTATATATCTCGTCA 59.698 44.000 0.00 0.00 41.46 4.35
3656 3740 6.442952 GGCTAATGGCTATATATCTCGTCAG 58.557 44.000 0.00 0.00 41.46 3.51
3657 3741 6.039941 GGCTAATGGCTATATATCTCGTCAGT 59.960 42.308 0.00 0.00 41.46 3.41
3658 3742 7.228906 GGCTAATGGCTATATATCTCGTCAGTA 59.771 40.741 0.00 0.00 41.46 2.74
3659 3743 8.622157 GCTAATGGCTATATATCTCGTCAGTAA 58.378 37.037 0.00 0.00 38.06 2.24
3671 3755 6.887376 TCTCGTCAGTAAATAAGTTGCATC 57.113 37.500 0.00 0.00 0.00 3.91
3672 3756 6.394809 TCTCGTCAGTAAATAAGTTGCATCA 58.605 36.000 0.00 0.00 0.00 3.07
3673 3757 6.871492 TCTCGTCAGTAAATAAGTTGCATCAA 59.129 34.615 0.00 0.00 0.00 2.57
3674 3758 7.549134 TCTCGTCAGTAAATAAGTTGCATCAAT 59.451 33.333 0.00 0.00 0.00 2.57
3675 3759 7.684670 TCGTCAGTAAATAAGTTGCATCAATC 58.315 34.615 0.00 0.00 0.00 2.67
3676 3760 6.624917 CGTCAGTAAATAAGTTGCATCAATCG 59.375 38.462 0.00 0.00 0.00 3.34
3677 3761 7.464045 CGTCAGTAAATAAGTTGCATCAATCGA 60.464 37.037 0.00 0.00 0.00 3.59
3678 3762 8.175069 GTCAGTAAATAAGTTGCATCAATCGAA 58.825 33.333 0.00 0.00 0.00 3.71
3679 3763 8.726068 TCAGTAAATAAGTTGCATCAATCGAAA 58.274 29.630 0.00 0.00 0.00 3.46
3680 3764 9.340695 CAGTAAATAAGTTGCATCAATCGAAAA 57.659 29.630 0.00 0.00 0.00 2.29
3688 3772 8.411318 AGTTGCATCAATCGAAAATAAAATCC 57.589 30.769 0.00 0.00 0.00 3.01
3689 3773 7.220683 AGTTGCATCAATCGAAAATAAAATCCG 59.779 33.333 0.00 0.00 0.00 4.18
3690 3774 5.458452 TGCATCAATCGAAAATAAAATCCGC 59.542 36.000 0.00 0.00 0.00 5.54
3691 3775 5.458452 GCATCAATCGAAAATAAAATCCGCA 59.542 36.000 0.00 0.00 0.00 5.69
3692 3776 6.019961 GCATCAATCGAAAATAAAATCCGCAA 60.020 34.615 0.00 0.00 0.00 4.85
3693 3777 7.463913 GCATCAATCGAAAATAAAATCCGCAAA 60.464 33.333 0.00 0.00 0.00 3.68
3694 3778 7.271936 TCAATCGAAAATAAAATCCGCAAAC 57.728 32.000 0.00 0.00 0.00 2.93
3695 3779 6.863645 TCAATCGAAAATAAAATCCGCAAACA 59.136 30.769 0.00 0.00 0.00 2.83
3696 3780 7.382488 TCAATCGAAAATAAAATCCGCAAACAA 59.618 29.630 0.00 0.00 0.00 2.83
3697 3781 7.826260 ATCGAAAATAAAATCCGCAAACAAT 57.174 28.000 0.00 0.00 0.00 2.71
3698 3782 7.271936 TCGAAAATAAAATCCGCAAACAATC 57.728 32.000 0.00 0.00 0.00 2.67
3699 3783 6.863645 TCGAAAATAAAATCCGCAAACAATCA 59.136 30.769 0.00 0.00 0.00 2.57
3700 3784 7.061673 TCGAAAATAAAATCCGCAAACAATCAG 59.938 33.333 0.00 0.00 0.00 2.90
3701 3785 6.407475 AAATAAAATCCGCAAACAATCAGC 57.593 33.333 0.00 0.00 0.00 4.26
3702 3786 2.368655 AAATCCGCAAACAATCAGCC 57.631 45.000 0.00 0.00 0.00 4.85
3703 3787 0.171007 AATCCGCAAACAATCAGCCG 59.829 50.000 0.00 0.00 0.00 5.52
3704 3788 0.676466 ATCCGCAAACAATCAGCCGA 60.676 50.000 0.00 0.00 0.00 5.54
3705 3789 0.886938 TCCGCAAACAATCAGCCGAA 60.887 50.000 0.00 0.00 0.00 4.30
3706 3790 0.454957 CCGCAAACAATCAGCCGAAG 60.455 55.000 0.00 0.00 0.00 3.79
3707 3791 1.067199 CGCAAACAATCAGCCGAAGC 61.067 55.000 0.00 0.00 40.32 3.86
3708 3792 0.733909 GCAAACAATCAGCCGAAGCC 60.734 55.000 0.00 0.00 41.25 4.35
3709 3793 0.109132 CAAACAATCAGCCGAAGCCC 60.109 55.000 0.00 0.00 41.25 5.19
3710 3794 1.586154 AAACAATCAGCCGAAGCCCG 61.586 55.000 0.00 0.00 41.25 6.13
3711 3795 2.125147 CAATCAGCCGAAGCCCGA 60.125 61.111 0.00 0.00 41.25 5.14
3712 3796 2.176273 CAATCAGCCGAAGCCCGAG 61.176 63.158 0.00 0.00 41.25 4.63
3713 3797 3.391665 AATCAGCCGAAGCCCGAGG 62.392 63.158 0.00 0.00 41.25 4.63
3718 3802 4.760047 CCGAAGCCCGAGGTGGTG 62.760 72.222 0.00 0.00 41.76 4.17
3720 3804 4.329545 GAAGCCCGAGGTGGTGCA 62.330 66.667 0.00 0.00 36.65 4.57
3721 3805 3.628646 GAAGCCCGAGGTGGTGCAT 62.629 63.158 0.00 0.00 36.65 3.96
3722 3806 3.628646 AAGCCCGAGGTGGTGCATC 62.629 63.158 0.00 0.00 36.65 3.91
3723 3807 4.408821 GCCCGAGGTGGTGCATCA 62.409 66.667 0.00 0.00 34.94 3.07
3724 3808 2.436646 CCCGAGGTGGTGCATCAC 60.437 66.667 22.26 22.26 35.15 3.06
3733 3817 3.490890 GTGCATCACCTCGGAAGC 58.509 61.111 0.00 0.00 32.43 3.86
3734 3818 1.375908 GTGCATCACCTCGGAAGCA 60.376 57.895 0.00 0.00 38.98 3.91
3735 3819 1.078918 TGCATCACCTCGGAAGCAG 60.079 57.895 0.00 0.00 36.67 4.24
3736 3820 1.078848 GCATCACCTCGGAAGCAGT 60.079 57.895 0.00 0.00 32.11 4.40
3737 3821 1.364626 GCATCACCTCGGAAGCAGTG 61.365 60.000 0.00 0.00 35.85 3.66
3738 3822 1.078848 ATCACCTCGGAAGCAGTGC 60.079 57.895 7.13 7.13 34.93 4.40
3739 3823 2.842394 ATCACCTCGGAAGCAGTGCG 62.842 60.000 10.00 0.00 43.49 5.34
3741 3825 2.811317 CCTCGGAAGCAGTGCGAC 60.811 66.667 10.00 7.73 46.07 5.19
3742 3826 2.049156 CTCGGAAGCAGTGCGACA 60.049 61.111 10.00 0.00 46.07 4.35
3743 3827 1.446792 CTCGGAAGCAGTGCGACAT 60.447 57.895 10.00 0.00 46.07 3.06
3744 3828 0.179137 CTCGGAAGCAGTGCGACATA 60.179 55.000 10.00 0.00 46.07 2.29
3745 3829 0.245266 TCGGAAGCAGTGCGACATAA 59.755 50.000 10.00 0.00 46.07 1.90
3746 3830 1.075542 CGGAAGCAGTGCGACATAAA 58.924 50.000 10.00 0.00 45.26 1.40
3747 3831 1.061131 CGGAAGCAGTGCGACATAAAG 59.939 52.381 10.00 0.00 45.26 1.85
3748 3832 1.202076 GGAAGCAGTGCGACATAAAGC 60.202 52.381 10.00 0.00 0.00 3.51
3749 3833 1.734465 GAAGCAGTGCGACATAAAGCT 59.266 47.619 10.00 0.00 0.00 3.74
3750 3834 1.363744 AGCAGTGCGACATAAAGCTC 58.636 50.000 10.00 0.00 0.00 4.09
3751 3835 0.025513 GCAGTGCGACATAAAGCTCG 59.974 55.000 0.00 0.00 32.79 5.03
3752 3836 0.647410 CAGTGCGACATAAAGCTCGG 59.353 55.000 0.00 0.00 32.79 4.63
3753 3837 0.530744 AGTGCGACATAAAGCTCGGA 59.469 50.000 0.00 0.00 32.79 4.55
3754 3838 1.137086 AGTGCGACATAAAGCTCGGAT 59.863 47.619 0.00 0.00 32.60 4.18
3755 3839 1.258982 GTGCGACATAAAGCTCGGATG 59.741 52.381 0.00 0.00 32.60 3.51
3756 3840 0.233332 GCGACATAAAGCTCGGATGC 59.767 55.000 0.00 0.00 0.00 3.91
3757 3841 1.570813 CGACATAAAGCTCGGATGCA 58.429 50.000 0.00 0.00 34.99 3.96
3758 3842 1.933181 CGACATAAAGCTCGGATGCAA 59.067 47.619 0.00 0.00 34.99 4.08
3759 3843 2.033407 CGACATAAAGCTCGGATGCAAG 60.033 50.000 0.00 0.00 34.99 4.01
3760 3844 2.939103 GACATAAAGCTCGGATGCAAGT 59.061 45.455 0.00 0.00 34.99 3.16
3761 3845 2.679837 ACATAAAGCTCGGATGCAAGTG 59.320 45.455 0.00 0.00 34.99 3.16
3762 3846 1.737838 TAAAGCTCGGATGCAAGTGG 58.262 50.000 0.00 0.00 34.99 4.00
3763 3847 0.250901 AAAGCTCGGATGCAAGTGGT 60.251 50.000 0.00 0.00 34.99 4.16
3764 3848 0.250901 AAGCTCGGATGCAAGTGGTT 60.251 50.000 0.00 0.00 34.99 3.67
3765 3849 0.957395 AGCTCGGATGCAAGTGGTTG 60.957 55.000 0.00 0.00 36.67 3.77
3766 3850 1.926511 GCTCGGATGCAAGTGGTTGG 61.927 60.000 0.00 0.00 33.87 3.77
3767 3851 1.926511 CTCGGATGCAAGTGGTTGGC 61.927 60.000 0.00 0.00 33.87 4.52
3768 3852 1.973281 CGGATGCAAGTGGTTGGCT 60.973 57.895 0.00 0.00 33.87 4.75
3769 3853 1.885871 GGATGCAAGTGGTTGGCTC 59.114 57.895 0.00 0.00 33.87 4.70
3770 3854 0.610232 GGATGCAAGTGGTTGGCTCT 60.610 55.000 0.00 0.00 33.87 4.09
3771 3855 1.340017 GGATGCAAGTGGTTGGCTCTA 60.340 52.381 0.00 0.00 33.87 2.43
3772 3856 2.648059 GATGCAAGTGGTTGGCTCTAT 58.352 47.619 0.00 0.00 33.87 1.98
3773 3857 3.433598 GGATGCAAGTGGTTGGCTCTATA 60.434 47.826 0.00 0.00 33.87 1.31
3774 3858 3.266510 TGCAAGTGGTTGGCTCTATAG 57.733 47.619 0.00 0.00 33.87 1.31
3775 3859 2.837591 TGCAAGTGGTTGGCTCTATAGA 59.162 45.455 1.69 1.69 33.87 1.98
3776 3860 3.118629 TGCAAGTGGTTGGCTCTATAGAG 60.119 47.826 23.20 23.20 38.40 2.43
3777 3861 3.742640 GCAAGTGGTTGGCTCTATAGAGG 60.743 52.174 27.21 12.08 37.11 3.69
3778 3862 2.683768 AGTGGTTGGCTCTATAGAGGG 58.316 52.381 27.21 8.11 42.29 4.30
3788 3872 3.936564 CTCTATAGAGGGCATTTCTGGC 58.063 50.000 20.37 0.00 46.82 4.85
3797 3881 3.531934 GGCATTTCTGGCATTAAAGCT 57.468 42.857 2.30 0.00 46.77 3.74
3798 3882 3.451526 GGCATTTCTGGCATTAAAGCTC 58.548 45.455 2.30 0.00 46.77 4.09
3799 3883 3.111098 GCATTTCTGGCATTAAAGCTCG 58.889 45.455 2.30 0.00 34.17 5.03
3800 3884 3.699067 CATTTCTGGCATTAAAGCTCGG 58.301 45.455 2.30 0.00 34.17 4.63
3801 3885 1.750193 TTCTGGCATTAAAGCTCGGG 58.250 50.000 2.30 0.00 34.17 5.14
3802 3886 0.618458 TCTGGCATTAAAGCTCGGGT 59.382 50.000 2.30 0.00 34.17 5.28
3803 3887 1.834896 TCTGGCATTAAAGCTCGGGTA 59.165 47.619 2.30 0.00 34.17 3.69
3804 3888 2.237643 TCTGGCATTAAAGCTCGGGTAA 59.762 45.455 2.30 0.00 34.17 2.85
3805 3889 3.013921 CTGGCATTAAAGCTCGGGTAAA 58.986 45.455 2.30 0.00 34.17 2.01
3806 3890 2.750712 TGGCATTAAAGCTCGGGTAAAC 59.249 45.455 2.30 0.00 34.17 2.01
3807 3891 3.014623 GGCATTAAAGCTCGGGTAAACT 58.985 45.455 2.30 0.00 34.17 2.66
3808 3892 3.064958 GGCATTAAAGCTCGGGTAAACTC 59.935 47.826 2.30 0.00 34.17 3.01
3809 3893 3.064958 GCATTAAAGCTCGGGTAAACTCC 59.935 47.826 0.00 0.00 0.00 3.85
3811 3895 0.683412 AAAGCTCGGGTAAACTCCGT 59.317 50.000 2.42 0.00 46.82 4.69
3812 3896 0.683412 AAGCTCGGGTAAACTCCGTT 59.317 50.000 2.42 0.00 46.82 4.44
3813 3897 0.037605 AGCTCGGGTAAACTCCGTTG 60.038 55.000 2.42 0.00 46.82 4.10
3814 3898 0.037975 GCTCGGGTAAACTCCGTTGA 60.038 55.000 2.42 0.00 46.82 3.18
3815 3899 1.706443 CTCGGGTAAACTCCGTTGAC 58.294 55.000 2.42 0.00 46.82 3.18
3816 3900 1.271656 CTCGGGTAAACTCCGTTGACT 59.728 52.381 2.42 0.00 46.82 3.41
3817 3901 1.688197 TCGGGTAAACTCCGTTGACTT 59.312 47.619 2.42 0.00 46.82 3.01
3818 3902 2.102925 TCGGGTAAACTCCGTTGACTTT 59.897 45.455 2.42 0.00 46.82 2.66
3819 3903 2.874086 CGGGTAAACTCCGTTGACTTTT 59.126 45.455 0.00 0.00 42.33 2.27
3820 3904 3.313249 CGGGTAAACTCCGTTGACTTTTT 59.687 43.478 0.00 0.00 42.33 1.94
3841 3925 7.630242 TTTTTGATCCAAGGTGATCTATGAC 57.370 36.000 0.00 0.00 41.42 3.06
3842 3926 5.955961 TTGATCCAAGGTGATCTATGACA 57.044 39.130 0.00 0.00 41.42 3.58
3843 3927 5.282055 TGATCCAAGGTGATCTATGACAC 57.718 43.478 0.00 0.00 41.42 3.67
3852 3936 5.049398 GTGATCTATGACACCTCGGATAC 57.951 47.826 0.00 0.00 0.00 2.24
3853 3937 4.519350 GTGATCTATGACACCTCGGATACA 59.481 45.833 0.00 0.00 0.00 2.29
3854 3938 4.762251 TGATCTATGACACCTCGGATACAG 59.238 45.833 0.00 0.00 0.00 2.74
3855 3939 4.166246 TCTATGACACCTCGGATACAGT 57.834 45.455 0.00 0.00 0.00 3.55
3856 3940 4.135306 TCTATGACACCTCGGATACAGTC 58.865 47.826 0.00 0.00 0.00 3.51
3857 3941 2.509166 TGACACCTCGGATACAGTCT 57.491 50.000 0.00 0.00 0.00 3.24
3858 3942 2.366533 TGACACCTCGGATACAGTCTC 58.633 52.381 0.00 0.00 0.00 3.36
3859 3943 1.331138 GACACCTCGGATACAGTCTCG 59.669 57.143 0.00 0.00 0.00 4.04
3860 3944 1.339824 ACACCTCGGATACAGTCTCGT 60.340 52.381 0.00 0.00 0.00 4.18
3861 3945 1.064208 CACCTCGGATACAGTCTCGTG 59.936 57.143 0.00 0.00 0.00 4.35
3862 3946 1.339824 ACCTCGGATACAGTCTCGTGT 60.340 52.381 0.00 0.00 34.21 4.49
3863 3947 1.743958 CCTCGGATACAGTCTCGTGTT 59.256 52.381 0.00 0.00 31.46 3.32
3864 3948 2.478031 CCTCGGATACAGTCTCGTGTTG 60.478 54.545 0.00 0.00 31.46 3.33
3865 3949 1.471287 TCGGATACAGTCTCGTGTTGG 59.529 52.381 0.00 0.00 31.46 3.77
3866 3950 1.471287 CGGATACAGTCTCGTGTTGGA 59.529 52.381 0.00 0.00 31.46 3.53
3867 3951 2.731341 CGGATACAGTCTCGTGTTGGAC 60.731 54.545 0.00 0.00 31.46 4.02
3868 3952 2.492484 GGATACAGTCTCGTGTTGGACT 59.508 50.000 0.00 0.00 42.67 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 5.559148 TGATTTAAATTGCAGGTTTGGGT 57.441 34.783 1.43 0.00 0.00 4.51
148 149 9.533831 AGGAACTTTGAATGTGTTATCCTAAAT 57.466 29.630 1.62 0.00 27.25 1.40
152 153 7.037586 TCCTAGGAACTTTGAATGTGTTATCCT 60.038 37.037 9.71 7.18 41.75 3.24
184 185 7.619302 TGGAGGTGATTCTATAGCCAAAAATTT 59.381 33.333 0.00 0.00 0.00 1.82
189 190 5.708736 TTGGAGGTGATTCTATAGCCAAA 57.291 39.130 0.00 0.00 31.81 3.28
383 384 7.390440 ACTTGATGTCTTCACAAATAATTCCGA 59.610 33.333 0.00 0.00 35.64 4.55
418 419 2.222027 GAAACTTCAGTGGGAGGTGTG 58.778 52.381 0.00 0.00 35.76 3.82
463 464 6.917217 ACATGCTTAGAAGAGCTATGAAAC 57.083 37.500 12.70 0.00 43.11 2.78
613 624 7.286316 CCAAATGCTCTCCTGGTAATAAGAATT 59.714 37.037 0.00 0.00 0.00 2.17
688 700 8.902540 TTAACAACTCAGTTCATCTACATGTT 57.097 30.769 2.30 0.00 33.07 2.71
746 758 8.195436 CAGCATCAATGAAATCTGGTAGAAAAT 58.805 33.333 0.00 0.00 0.00 1.82
747 759 7.394077 TCAGCATCAATGAAATCTGGTAGAAAA 59.606 33.333 8.92 0.00 0.00 2.29
752 767 6.094464 CAGTTCAGCATCAATGAAATCTGGTA 59.906 38.462 8.92 0.00 38.34 3.25
786 801 7.583762 GCAACTAAATTTTCATCAAGCAACAAC 59.416 33.333 0.00 0.00 0.00 3.32
817 832 9.836864 ATGCATTGTATTGTTGAGAGTATTCTA 57.163 29.630 0.00 0.00 32.53 2.10
864 879 5.651530 ACTTCATATTGAGTGACTGTACCG 58.348 41.667 0.00 0.00 0.00 4.02
887 902 5.356190 GCATCAAATGAAGGAGAATCTGTGA 59.644 40.000 0.00 0.00 33.73 3.58
1008 1023 1.207570 TGAACATTGGGATTGGCATGC 59.792 47.619 9.90 9.90 0.00 4.06
1028 1049 3.395941 CCTTATAGGGCTCTTGGTTCCAT 59.604 47.826 0.00 0.00 0.00 3.41
1036 1057 7.837359 AATCCATTATCCTTATAGGGCTCTT 57.163 36.000 0.00 0.00 35.59 2.85
1132 1153 4.099881 ACTGGAATGTGCTTCATGTTGTTT 59.900 37.500 0.00 0.00 36.81 2.83
1327 1348 7.367285 TCATTTGCTTTTTGTACATACCTGAC 58.633 34.615 0.00 0.00 0.00 3.51
1387 1408 9.409949 GCATCGATAGCGTATATAAATTGTTTC 57.590 33.333 0.00 0.00 38.98 2.78
1402 1425 5.574443 TCATGAGAAAATAGCATCGATAGCG 59.426 40.000 0.00 0.00 37.01 4.26
1460 1485 9.631257 TCTCAAATATTCTTTGGCTATTGATGA 57.369 29.630 0.00 0.00 0.00 2.92
1515 1540 6.769822 CACCAGGCTTGAATGATAGAGTTATT 59.230 38.462 0.00 0.00 0.00 1.40
1573 1598 5.748630 GCTGGTCTTTGTTCTTTAGTTTTGG 59.251 40.000 0.00 0.00 0.00 3.28
1689 1715 9.264719 GATGTGAAAATGAAAACAGAGGAAAAT 57.735 29.630 0.00 0.00 0.00 1.82
1772 1802 7.902920 ATGATTTAGCATTGGGTTCATTAGT 57.097 32.000 0.00 0.00 0.00 2.24
2042 2074 5.909621 AATGTATCACCACTGTAGTACGT 57.090 39.130 0.00 0.00 0.00 3.57
2396 2436 3.181423 ACCCCAGCAATTCAAGACCTTTA 60.181 43.478 0.00 0.00 0.00 1.85
2413 2453 7.924358 TTATAGCTTACATTAGAGAACCCCA 57.076 36.000 0.00 0.00 0.00 4.96
2582 2625 4.202284 TGCAGGAAAGAAGTTACTAACGGT 60.202 41.667 0.00 0.00 36.23 4.83
2634 2682 5.904362 ACATCTCTTTTGTTTCCATAGGC 57.096 39.130 0.00 0.00 0.00 3.93
2778 2826 0.877071 AATCTTGCAGTGCACTTCCG 59.123 50.000 19.58 7.55 38.71 4.30
2939 2992 7.744087 AAAAATGTACATGTCTTACTGCTCA 57.256 32.000 9.63 0.00 0.00 4.26
3016 3070 9.379791 ACTATCATAAAAGTGGTAAGCTTACAC 57.620 33.333 31.98 26.17 35.37 2.90
3134 3189 7.507616 TGGTTGTAGGTTCCATTTTATGAAACT 59.492 33.333 0.00 0.00 0.00 2.66
3201 3258 2.223479 CCACTGTTTCAACTGTTTCCCG 60.223 50.000 0.00 0.00 38.76 5.14
3284 3358 4.792068 AGAATGGTTCCACTGTTTCTTCA 58.208 39.130 0.00 0.00 0.00 3.02
3343 3426 2.668457 GCTGTTCCACTGATTACTGTCG 59.332 50.000 0.00 0.00 0.00 4.35
3349 3432 1.725641 CGCAGCTGTTCCACTGATTA 58.274 50.000 16.64 0.00 35.90 1.75
3366 3449 0.656205 TTCGTTTTTCTGCTTCGCGC 60.656 50.000 0.00 0.00 39.77 6.86
3398 3482 3.181471 TGCGTGTTTCCATGGTTTTGAAT 60.181 39.130 12.58 0.00 0.00 2.57
3409 3493 2.970324 GCGAGGTGCGTGTTTCCA 60.970 61.111 0.00 0.00 43.41 3.53
3475 3559 4.611310 ATGTCATTCATTCTGCGTCAAG 57.389 40.909 0.00 0.00 32.08 3.02
3489 3573 4.846940 GGATAGGGGAACTCCTATGTCATT 59.153 45.833 16.82 0.00 46.84 2.57
3490 3574 4.430441 GGATAGGGGAACTCCTATGTCAT 58.570 47.826 16.82 0.00 46.84 3.06
3492 3576 2.826725 CGGATAGGGGAACTCCTATGTC 59.173 54.545 16.82 5.56 46.84 3.06
3509 3593 6.701841 CGTAATATATTAGCTTGATGCCGGAT 59.298 38.462 5.05 0.00 44.23 4.18
3510 3594 6.040247 CGTAATATATTAGCTTGATGCCGGA 58.960 40.000 5.05 0.00 44.23 5.14
3511 3595 5.234329 CCGTAATATATTAGCTTGATGCCGG 59.766 44.000 5.39 0.00 44.23 6.13
3512 3596 5.276868 GCCGTAATATATTAGCTTGATGCCG 60.277 44.000 5.39 3.07 44.23 5.69
3513 3597 5.276868 CGCCGTAATATATTAGCTTGATGCC 60.277 44.000 5.39 0.00 44.23 4.40
3514 3598 5.518847 TCGCCGTAATATATTAGCTTGATGC 59.481 40.000 5.39 1.49 43.29 3.91
3515 3599 6.752351 AGTCGCCGTAATATATTAGCTTGATG 59.248 38.462 5.39 0.00 0.00 3.07
3516 3600 6.864342 AGTCGCCGTAATATATTAGCTTGAT 58.136 36.000 5.39 0.00 0.00 2.57
3517 3601 6.263516 AGTCGCCGTAATATATTAGCTTGA 57.736 37.500 5.39 0.44 0.00 3.02
3518 3602 6.946229 AAGTCGCCGTAATATATTAGCTTG 57.054 37.500 5.39 0.00 0.00 4.01
3519 3603 9.084164 CAATAAGTCGCCGTAATATATTAGCTT 57.916 33.333 5.39 6.53 0.00 3.74
3520 3604 8.464404 TCAATAAGTCGCCGTAATATATTAGCT 58.536 33.333 5.39 0.00 0.00 3.32
3521 3605 8.624701 TCAATAAGTCGCCGTAATATATTAGC 57.375 34.615 5.39 6.11 0.00 3.09
3522 3606 9.999009 TCTCAATAAGTCGCCGTAATATATTAG 57.001 33.333 5.39 0.00 0.00 1.73
3523 3607 9.778993 GTCTCAATAAGTCGCCGTAATATATTA 57.221 33.333 0.81 0.81 0.00 0.98
3524 3608 7.758528 GGTCTCAATAAGTCGCCGTAATATATT 59.241 37.037 2.97 2.97 0.00 1.28
3525 3609 7.256286 GGTCTCAATAAGTCGCCGTAATATAT 58.744 38.462 0.00 0.00 0.00 0.86
3526 3610 6.349611 GGGTCTCAATAAGTCGCCGTAATATA 60.350 42.308 0.00 0.00 0.00 0.86
3527 3611 5.467705 GGTCTCAATAAGTCGCCGTAATAT 58.532 41.667 0.00 0.00 0.00 1.28
3528 3612 4.261741 GGGTCTCAATAAGTCGCCGTAATA 60.262 45.833 0.00 0.00 0.00 0.98
3529 3613 3.492137 GGGTCTCAATAAGTCGCCGTAAT 60.492 47.826 0.00 0.00 0.00 1.89
3530 3614 2.159198 GGGTCTCAATAAGTCGCCGTAA 60.159 50.000 0.00 0.00 0.00 3.18
3531 3615 1.406539 GGGTCTCAATAAGTCGCCGTA 59.593 52.381 0.00 0.00 0.00 4.02
3532 3616 0.175073 GGGTCTCAATAAGTCGCCGT 59.825 55.000 0.00 0.00 0.00 5.68
3533 3617 0.460311 AGGGTCTCAATAAGTCGCCG 59.540 55.000 0.00 0.00 0.00 6.46
3534 3618 1.757699 AGAGGGTCTCAATAAGTCGCC 59.242 52.381 0.00 0.00 32.06 5.54
3535 3619 2.691011 AGAGAGGGTCTCAATAAGTCGC 59.309 50.000 6.70 0.00 45.73 5.19
3550 3634 2.685380 ACGGGCCCTTGAGAGAGG 60.685 66.667 22.43 2.61 36.52 3.69
3551 3635 2.726351 GGACGGGCCCTTGAGAGAG 61.726 68.421 22.43 3.46 0.00 3.20
3552 3636 2.683933 GGACGGGCCCTTGAGAGA 60.684 66.667 22.43 0.00 0.00 3.10
3553 3637 2.685380 AGGACGGGCCCTTGAGAG 60.685 66.667 22.43 5.20 37.37 3.20
3554 3638 2.683933 GAGGACGGGCCCTTGAGA 60.684 66.667 22.43 0.00 36.49 3.27
3555 3639 3.787001 GGAGGACGGGCCCTTGAG 61.787 72.222 22.43 6.52 36.49 3.02
3556 3640 4.649705 TGGAGGACGGGCCCTTGA 62.650 66.667 22.43 0.00 36.49 3.02
3557 3641 2.893682 GATTGGAGGACGGGCCCTTG 62.894 65.000 22.43 7.85 36.49 3.61
3558 3642 2.614013 ATTGGAGGACGGGCCCTT 60.614 61.111 22.43 11.59 36.49 3.95
3559 3643 3.090532 GATTGGAGGACGGGCCCT 61.091 66.667 22.43 6.87 39.77 5.19
3560 3644 3.407967 TGATTGGAGGACGGGCCC 61.408 66.667 13.57 13.57 37.37 5.80
3561 3645 1.335132 TAGTGATTGGAGGACGGGCC 61.335 60.000 0.00 0.00 0.00 5.80
3562 3646 0.179081 GTAGTGATTGGAGGACGGGC 60.179 60.000 0.00 0.00 0.00 6.13
3563 3647 0.464452 GGTAGTGATTGGAGGACGGG 59.536 60.000 0.00 0.00 0.00 5.28
3564 3648 1.409427 GAGGTAGTGATTGGAGGACGG 59.591 57.143 0.00 0.00 0.00 4.79
3565 3649 1.409427 GGAGGTAGTGATTGGAGGACG 59.591 57.143 0.00 0.00 0.00 4.79
3566 3650 2.696187 GAGGAGGTAGTGATTGGAGGAC 59.304 54.545 0.00 0.00 0.00 3.85
3567 3651 2.587777 AGAGGAGGTAGTGATTGGAGGA 59.412 50.000 0.00 0.00 0.00 3.71
3568 3652 3.039252 AGAGGAGGTAGTGATTGGAGG 57.961 52.381 0.00 0.00 0.00 4.30
3569 3653 5.600484 ACATTAGAGGAGGTAGTGATTGGAG 59.400 44.000 0.00 0.00 0.00 3.86
3570 3654 5.363868 CACATTAGAGGAGGTAGTGATTGGA 59.636 44.000 0.00 0.00 0.00 3.53
3571 3655 5.605534 CACATTAGAGGAGGTAGTGATTGG 58.394 45.833 0.00 0.00 0.00 3.16
3572 3656 5.053145 GCACATTAGAGGAGGTAGTGATTG 58.947 45.833 0.00 0.00 0.00 2.67
3573 3657 4.716784 TGCACATTAGAGGAGGTAGTGATT 59.283 41.667 0.00 0.00 0.00 2.57
3574 3658 4.290093 TGCACATTAGAGGAGGTAGTGAT 58.710 43.478 0.00 0.00 0.00 3.06
3575 3659 3.708451 TGCACATTAGAGGAGGTAGTGA 58.292 45.455 0.00 0.00 0.00 3.41
3576 3660 4.343526 AGATGCACATTAGAGGAGGTAGTG 59.656 45.833 0.00 0.00 0.00 2.74
3577 3661 4.551671 AGATGCACATTAGAGGAGGTAGT 58.448 43.478 0.00 0.00 0.00 2.73
3578 3662 5.295950 CAAGATGCACATTAGAGGAGGTAG 58.704 45.833 0.00 0.00 0.00 3.18
3579 3663 4.101585 CCAAGATGCACATTAGAGGAGGTA 59.898 45.833 0.00 0.00 0.00 3.08
3580 3664 3.118112 CCAAGATGCACATTAGAGGAGGT 60.118 47.826 0.00 0.00 0.00 3.85
3581 3665 3.135348 TCCAAGATGCACATTAGAGGAGG 59.865 47.826 0.00 0.00 0.00 4.30
3582 3666 4.412796 TCCAAGATGCACATTAGAGGAG 57.587 45.455 0.00 0.00 0.00 3.69
3583 3667 5.378230 AATCCAAGATGCACATTAGAGGA 57.622 39.130 0.00 0.00 0.00 3.71
3584 3668 6.461110 AAAATCCAAGATGCACATTAGAGG 57.539 37.500 0.00 0.00 0.00 3.69
3585 3669 7.646314 CCTAAAATCCAAGATGCACATTAGAG 58.354 38.462 0.00 0.00 0.00 2.43
3586 3670 6.039717 GCCTAAAATCCAAGATGCACATTAGA 59.960 38.462 0.00 0.00 0.00 2.10
3587 3671 6.040166 AGCCTAAAATCCAAGATGCACATTAG 59.960 38.462 0.00 0.00 0.00 1.73
3588 3672 5.893255 AGCCTAAAATCCAAGATGCACATTA 59.107 36.000 0.00 0.00 0.00 1.90
3589 3673 4.713321 AGCCTAAAATCCAAGATGCACATT 59.287 37.500 0.00 0.00 0.00 2.71
3590 3674 4.098960 CAGCCTAAAATCCAAGATGCACAT 59.901 41.667 0.00 0.00 0.00 3.21
3591 3675 3.444742 CAGCCTAAAATCCAAGATGCACA 59.555 43.478 0.00 0.00 0.00 4.57
3592 3676 3.696051 TCAGCCTAAAATCCAAGATGCAC 59.304 43.478 0.00 0.00 0.00 4.57
3593 3677 3.696051 GTCAGCCTAAAATCCAAGATGCA 59.304 43.478 0.00 0.00 0.00 3.96
3594 3678 3.696051 TGTCAGCCTAAAATCCAAGATGC 59.304 43.478 0.00 0.00 0.00 3.91
3595 3679 4.701651 TGTGTCAGCCTAAAATCCAAGATG 59.298 41.667 0.00 0.00 0.00 2.90
3596 3680 4.702131 GTGTGTCAGCCTAAAATCCAAGAT 59.298 41.667 0.00 0.00 0.00 2.40
3597 3681 4.072131 GTGTGTCAGCCTAAAATCCAAGA 58.928 43.478 0.00 0.00 0.00 3.02
3598 3682 3.820467 TGTGTGTCAGCCTAAAATCCAAG 59.180 43.478 0.00 0.00 0.00 3.61
3599 3683 3.568007 GTGTGTGTCAGCCTAAAATCCAA 59.432 43.478 0.00 0.00 0.00 3.53
3600 3684 3.146066 GTGTGTGTCAGCCTAAAATCCA 58.854 45.455 0.00 0.00 0.00 3.41
3601 3685 3.058224 GTGTGTGTGTCAGCCTAAAATCC 60.058 47.826 0.00 0.00 0.00 3.01
3602 3686 3.563808 TGTGTGTGTGTCAGCCTAAAATC 59.436 43.478 0.00 0.00 0.00 2.17
3603 3687 3.315191 GTGTGTGTGTGTCAGCCTAAAAT 59.685 43.478 0.00 0.00 0.00 1.82
3604 3688 2.680841 GTGTGTGTGTGTCAGCCTAAAA 59.319 45.455 0.00 0.00 0.00 1.52
3605 3689 2.285083 GTGTGTGTGTGTCAGCCTAAA 58.715 47.619 0.00 0.00 0.00 1.85
3606 3690 1.474320 GGTGTGTGTGTGTCAGCCTAA 60.474 52.381 0.00 0.00 0.00 2.69
3607 3691 0.105964 GGTGTGTGTGTGTCAGCCTA 59.894 55.000 0.00 0.00 0.00 3.93
3608 3692 1.153168 GGTGTGTGTGTGTCAGCCT 60.153 57.895 0.00 0.00 0.00 4.58
3609 3693 0.748005 AAGGTGTGTGTGTGTCAGCC 60.748 55.000 0.00 0.00 0.00 4.85
3610 3694 0.378257 CAAGGTGTGTGTGTGTCAGC 59.622 55.000 0.00 0.00 0.00 4.26
3611 3695 1.935873 CTCAAGGTGTGTGTGTGTCAG 59.064 52.381 0.00 0.00 0.00 3.51
3612 3696 1.406751 CCTCAAGGTGTGTGTGTGTCA 60.407 52.381 0.00 0.00 0.00 3.58
3613 3697 1.299541 CCTCAAGGTGTGTGTGTGTC 58.700 55.000 0.00 0.00 0.00 3.67
3614 3698 0.107214 CCCTCAAGGTGTGTGTGTGT 60.107 55.000 0.00 0.00 0.00 3.72
3615 3699 1.447317 GCCCTCAAGGTGTGTGTGTG 61.447 60.000 0.00 0.00 38.26 3.82
3616 3700 1.152963 GCCCTCAAGGTGTGTGTGT 60.153 57.895 0.00 0.00 38.26 3.72
3617 3701 0.396435 TAGCCCTCAAGGTGTGTGTG 59.604 55.000 0.00 0.00 38.26 3.82
3618 3702 1.136828 TTAGCCCTCAAGGTGTGTGT 58.863 50.000 0.00 0.00 38.26 3.72
3619 3703 2.086869 CATTAGCCCTCAAGGTGTGTG 58.913 52.381 0.00 0.00 38.26 3.82
3620 3704 1.004745 CCATTAGCCCTCAAGGTGTGT 59.995 52.381 0.00 0.00 38.26 3.72
3621 3705 1.755179 CCATTAGCCCTCAAGGTGTG 58.245 55.000 0.00 0.00 38.26 3.82
3622 3706 0.034089 GCCATTAGCCCTCAAGGTGT 60.034 55.000 0.00 0.00 38.26 4.16
3623 3707 0.257039 AGCCATTAGCCCTCAAGGTG 59.743 55.000 0.00 0.00 45.47 4.00
3624 3708 1.893315 TAGCCATTAGCCCTCAAGGT 58.107 50.000 0.00 0.00 45.47 3.50
3625 3709 4.851639 ATATAGCCATTAGCCCTCAAGG 57.148 45.455 0.00 0.00 45.47 3.61
3626 3710 7.372260 AGATATATAGCCATTAGCCCTCAAG 57.628 40.000 0.00 0.00 45.47 3.02
3627 3711 6.040955 CGAGATATATAGCCATTAGCCCTCAA 59.959 42.308 0.00 0.00 45.47 3.02
3628 3712 5.536538 CGAGATATATAGCCATTAGCCCTCA 59.463 44.000 0.00 0.00 45.47 3.86
3629 3713 5.536916 ACGAGATATATAGCCATTAGCCCTC 59.463 44.000 0.00 0.00 45.47 4.30
3630 3714 5.459505 ACGAGATATATAGCCATTAGCCCT 58.540 41.667 0.00 0.00 45.47 5.19
3631 3715 5.302059 TGACGAGATATATAGCCATTAGCCC 59.698 44.000 0.00 0.00 45.47 5.19
3632 3716 6.039941 ACTGACGAGATATATAGCCATTAGCC 59.960 42.308 0.00 0.00 45.47 3.93
3633 3717 7.033530 ACTGACGAGATATATAGCCATTAGC 57.966 40.000 0.00 0.00 44.25 3.09
3645 3729 9.197694 GATGCAACTTATTTACTGACGAGATAT 57.802 33.333 0.00 0.00 0.00 1.63
3646 3730 8.194769 TGATGCAACTTATTTACTGACGAGATA 58.805 33.333 0.00 0.00 0.00 1.98
3647 3731 7.041721 TGATGCAACTTATTTACTGACGAGAT 58.958 34.615 0.00 0.00 0.00 2.75
3648 3732 6.394809 TGATGCAACTTATTTACTGACGAGA 58.605 36.000 0.00 0.00 0.00 4.04
3649 3733 6.647212 TGATGCAACTTATTTACTGACGAG 57.353 37.500 0.00 0.00 0.00 4.18
3650 3734 7.464045 CGATTGATGCAACTTATTTACTGACGA 60.464 37.037 0.00 0.00 0.00 4.20
3651 3735 6.624917 CGATTGATGCAACTTATTTACTGACG 59.375 38.462 0.00 0.00 0.00 4.35
3652 3736 7.684670 TCGATTGATGCAACTTATTTACTGAC 58.315 34.615 0.00 0.00 0.00 3.51
3653 3737 7.841915 TCGATTGATGCAACTTATTTACTGA 57.158 32.000 0.00 0.00 0.00 3.41
3654 3738 8.894409 TTTCGATTGATGCAACTTATTTACTG 57.106 30.769 0.00 0.00 0.00 2.74
3662 3746 8.872845 GGATTTTATTTTCGATTGATGCAACTT 58.127 29.630 0.00 0.00 0.00 2.66
3663 3747 7.220683 CGGATTTTATTTTCGATTGATGCAACT 59.779 33.333 0.00 0.00 0.00 3.16
3664 3748 7.329582 CGGATTTTATTTTCGATTGATGCAAC 58.670 34.615 0.00 0.00 0.00 4.17
3665 3749 6.019961 GCGGATTTTATTTTCGATTGATGCAA 60.020 34.615 0.00 0.00 0.00 4.08
3666 3750 5.458452 GCGGATTTTATTTTCGATTGATGCA 59.542 36.000 0.00 0.00 0.00 3.96
3667 3751 5.458452 TGCGGATTTTATTTTCGATTGATGC 59.542 36.000 0.00 0.00 0.00 3.91
3668 3752 7.448588 TTGCGGATTTTATTTTCGATTGATG 57.551 32.000 0.00 0.00 0.00 3.07
3669 3753 7.543868 TGTTTGCGGATTTTATTTTCGATTGAT 59.456 29.630 0.00 0.00 0.00 2.57
3670 3754 6.863645 TGTTTGCGGATTTTATTTTCGATTGA 59.136 30.769 0.00 0.00 0.00 2.57
3671 3755 7.043454 TGTTTGCGGATTTTATTTTCGATTG 57.957 32.000 0.00 0.00 0.00 2.67
3672 3756 7.644986 TTGTTTGCGGATTTTATTTTCGATT 57.355 28.000 0.00 0.00 0.00 3.34
3673 3757 7.543868 TGATTGTTTGCGGATTTTATTTTCGAT 59.456 29.630 0.00 0.00 0.00 3.59
3674 3758 6.863645 TGATTGTTTGCGGATTTTATTTTCGA 59.136 30.769 0.00 0.00 0.00 3.71
3675 3759 7.043454 TGATTGTTTGCGGATTTTATTTTCG 57.957 32.000 0.00 0.00 0.00 3.46
3676 3760 6.955407 GCTGATTGTTTGCGGATTTTATTTTC 59.045 34.615 0.00 0.00 0.00 2.29
3677 3761 6.128309 GGCTGATTGTTTGCGGATTTTATTTT 60.128 34.615 0.00 0.00 0.00 1.82
3678 3762 5.351189 GGCTGATTGTTTGCGGATTTTATTT 59.649 36.000 0.00 0.00 0.00 1.40
3679 3763 4.869861 GGCTGATTGTTTGCGGATTTTATT 59.130 37.500 0.00 0.00 0.00 1.40
3680 3764 4.432712 GGCTGATTGTTTGCGGATTTTAT 58.567 39.130 0.00 0.00 0.00 1.40
3681 3765 3.671971 CGGCTGATTGTTTGCGGATTTTA 60.672 43.478 0.00 0.00 0.00 1.52
3682 3766 2.687370 GGCTGATTGTTTGCGGATTTT 58.313 42.857 0.00 0.00 0.00 1.82
3683 3767 1.402720 CGGCTGATTGTTTGCGGATTT 60.403 47.619 0.00 0.00 0.00 2.17
3684 3768 0.171007 CGGCTGATTGTTTGCGGATT 59.829 50.000 0.00 0.00 0.00 3.01
3685 3769 0.676466 TCGGCTGATTGTTTGCGGAT 60.676 50.000 0.00 0.00 32.55 4.18
3686 3770 0.886938 TTCGGCTGATTGTTTGCGGA 60.887 50.000 0.00 0.00 34.97 5.54
3687 3771 0.454957 CTTCGGCTGATTGTTTGCGG 60.455 55.000 0.00 0.00 0.00 5.69
3688 3772 1.067199 GCTTCGGCTGATTGTTTGCG 61.067 55.000 0.00 0.00 38.08 4.85
3689 3773 0.733909 GGCTTCGGCTGATTGTTTGC 60.734 55.000 0.00 0.00 41.44 3.68
3690 3774 0.109132 GGGCTTCGGCTGATTGTTTG 60.109 55.000 0.00 0.00 41.44 2.93
3691 3775 1.586154 CGGGCTTCGGCTGATTGTTT 61.586 55.000 0.00 0.00 41.44 2.83
3692 3776 2.040544 CGGGCTTCGGCTGATTGTT 61.041 57.895 0.00 0.00 41.44 2.83
3693 3777 2.436646 CGGGCTTCGGCTGATTGT 60.437 61.111 0.00 0.00 41.44 2.71
3694 3778 2.125147 TCGGGCTTCGGCTGATTG 60.125 61.111 0.00 0.00 38.58 2.67
3695 3779 2.187946 CTCGGGCTTCGGCTGATT 59.812 61.111 0.00 0.00 42.48 2.57
3696 3780 3.854669 CCTCGGGCTTCGGCTGAT 61.855 66.667 0.00 0.00 42.48 2.90
3701 3785 4.760047 CACCACCTCGGGCTTCGG 62.760 72.222 0.75 0.00 40.22 4.30
3703 3787 3.628646 ATGCACCACCTCGGGCTTC 62.629 63.158 0.00 0.00 40.22 3.86
3704 3788 3.628646 GATGCACCACCTCGGGCTT 62.629 63.158 0.00 0.00 40.22 4.35
3705 3789 4.101448 GATGCACCACCTCGGGCT 62.101 66.667 0.00 0.00 40.22 5.19
3706 3790 4.408821 TGATGCACCACCTCGGGC 62.409 66.667 0.00 0.00 40.22 6.13
3707 3791 2.436646 GTGATGCACCACCTCGGG 60.437 66.667 0.00 0.00 40.22 5.14
3716 3800 1.364626 CTGCTTCCGAGGTGATGCAC 61.365 60.000 0.00 0.00 39.59 4.57
3717 3801 1.078918 CTGCTTCCGAGGTGATGCA 60.079 57.895 0.00 0.00 41.45 3.96
3718 3802 1.078848 ACTGCTTCCGAGGTGATGC 60.079 57.895 0.00 0.00 36.31 3.91
3719 3803 1.364626 GCACTGCTTCCGAGGTGATG 61.365 60.000 0.00 0.00 32.12 3.07
3720 3804 1.078848 GCACTGCTTCCGAGGTGAT 60.079 57.895 0.00 0.00 32.12 3.06
3721 3805 2.343758 GCACTGCTTCCGAGGTGA 59.656 61.111 0.00 0.00 32.12 4.02
3722 3806 3.114616 CGCACTGCTTCCGAGGTG 61.115 66.667 0.00 0.00 0.00 4.00
3723 3807 3.303135 TCGCACTGCTTCCGAGGT 61.303 61.111 0.00 0.00 0.00 3.85
3724 3808 2.811317 GTCGCACTGCTTCCGAGG 60.811 66.667 0.00 0.00 0.00 4.63
3725 3809 0.179137 TATGTCGCACTGCTTCCGAG 60.179 55.000 0.00 0.00 0.00 4.63
3726 3810 0.245266 TTATGTCGCACTGCTTCCGA 59.755 50.000 0.00 0.00 0.00 4.55
3727 3811 1.061131 CTTTATGTCGCACTGCTTCCG 59.939 52.381 0.00 0.00 0.00 4.30
3728 3812 1.202076 GCTTTATGTCGCACTGCTTCC 60.202 52.381 0.00 0.00 0.00 3.46
3729 3813 1.734465 AGCTTTATGTCGCACTGCTTC 59.266 47.619 0.00 0.00 0.00 3.86
3730 3814 1.734465 GAGCTTTATGTCGCACTGCTT 59.266 47.619 0.00 0.00 0.00 3.91
3731 3815 1.363744 GAGCTTTATGTCGCACTGCT 58.636 50.000 0.00 0.00 0.00 4.24
3732 3816 0.025513 CGAGCTTTATGTCGCACTGC 59.974 55.000 0.00 0.00 0.00 4.40
3733 3817 0.647410 CCGAGCTTTATGTCGCACTG 59.353 55.000 0.00 0.00 34.78 3.66
3734 3818 0.530744 TCCGAGCTTTATGTCGCACT 59.469 50.000 0.00 0.00 34.78 4.40
3735 3819 1.258982 CATCCGAGCTTTATGTCGCAC 59.741 52.381 0.00 0.00 34.78 5.34
3736 3820 1.570813 CATCCGAGCTTTATGTCGCA 58.429 50.000 0.00 0.00 34.78 5.10
3737 3821 0.233332 GCATCCGAGCTTTATGTCGC 59.767 55.000 0.00 0.00 34.78 5.19
3738 3822 1.570813 TGCATCCGAGCTTTATGTCG 58.429 50.000 0.00 0.00 35.91 4.35
3739 3823 2.939103 ACTTGCATCCGAGCTTTATGTC 59.061 45.455 0.00 0.00 34.99 3.06
3740 3824 2.679837 CACTTGCATCCGAGCTTTATGT 59.320 45.455 0.00 0.00 34.99 2.29
3741 3825 2.032550 CCACTTGCATCCGAGCTTTATG 59.967 50.000 0.00 0.00 34.99 1.90
3742 3826 2.292267 CCACTTGCATCCGAGCTTTAT 58.708 47.619 0.00 0.00 34.99 1.40
3743 3827 1.003118 ACCACTTGCATCCGAGCTTTA 59.997 47.619 0.00 0.00 34.99 1.85
3744 3828 0.250901 ACCACTTGCATCCGAGCTTT 60.251 50.000 0.00 0.00 34.99 3.51
3745 3829 0.250901 AACCACTTGCATCCGAGCTT 60.251 50.000 0.00 0.00 34.99 3.74
3746 3830 0.957395 CAACCACTTGCATCCGAGCT 60.957 55.000 0.00 0.00 34.99 4.09
3747 3831 1.503542 CAACCACTTGCATCCGAGC 59.496 57.895 0.00 0.00 0.00 5.03
3748 3832 1.926511 GCCAACCACTTGCATCCGAG 61.927 60.000 0.00 0.00 0.00 4.63
3749 3833 1.971167 GCCAACCACTTGCATCCGA 60.971 57.895 0.00 0.00 0.00 4.55
3750 3834 1.926511 GAGCCAACCACTTGCATCCG 61.927 60.000 0.00 0.00 0.00 4.18
3751 3835 0.610232 AGAGCCAACCACTTGCATCC 60.610 55.000 0.00 0.00 0.00 3.51
3752 3836 2.113860 TAGAGCCAACCACTTGCATC 57.886 50.000 0.00 0.00 0.00 3.91
3753 3837 2.814805 ATAGAGCCAACCACTTGCAT 57.185 45.000 0.00 0.00 0.00 3.96
3754 3838 2.837591 TCTATAGAGCCAACCACTTGCA 59.162 45.455 0.00 0.00 0.00 4.08
3755 3839 3.462021 CTCTATAGAGCCAACCACTTGC 58.538 50.000 16.68 0.00 35.13 4.01
3756 3840 3.181461 CCCTCTATAGAGCCAACCACTTG 60.181 52.174 22.33 6.34 40.75 3.16
3757 3841 3.041946 CCCTCTATAGAGCCAACCACTT 58.958 50.000 22.33 0.00 40.75 3.16
3758 3842 2.683768 CCCTCTATAGAGCCAACCACT 58.316 52.381 22.33 0.00 40.75 4.00
3759 3843 1.070914 GCCCTCTATAGAGCCAACCAC 59.929 57.143 22.33 4.22 40.75 4.16
3760 3844 1.343985 TGCCCTCTATAGAGCCAACCA 60.344 52.381 22.33 11.58 40.75 3.67
3761 3845 1.424638 TGCCCTCTATAGAGCCAACC 58.575 55.000 22.33 9.48 40.75 3.77
3762 3846 3.778954 AATGCCCTCTATAGAGCCAAC 57.221 47.619 22.33 11.96 40.75 3.77
3763 3847 3.976654 AGAAATGCCCTCTATAGAGCCAA 59.023 43.478 22.33 10.75 40.75 4.52
3764 3848 3.326006 CAGAAATGCCCTCTATAGAGCCA 59.674 47.826 22.33 19.90 40.75 4.75
3765 3849 3.307339 CCAGAAATGCCCTCTATAGAGCC 60.307 52.174 22.33 15.58 40.75 4.70
3766 3850 3.867984 GCCAGAAATGCCCTCTATAGAGC 60.868 52.174 22.33 14.43 40.75 4.09
3767 3851 3.326006 TGCCAGAAATGCCCTCTATAGAG 59.674 47.826 21.04 21.04 41.71 2.43
3768 3852 3.317406 TGCCAGAAATGCCCTCTATAGA 58.683 45.455 1.69 1.69 0.00 1.98
3769 3853 3.777106 TGCCAGAAATGCCCTCTATAG 57.223 47.619 0.00 0.00 0.00 1.31
3770 3854 4.729552 AATGCCAGAAATGCCCTCTATA 57.270 40.909 0.00 0.00 0.00 1.31
3771 3855 3.607490 AATGCCAGAAATGCCCTCTAT 57.393 42.857 0.00 0.00 0.00 1.98
3772 3856 4.518278 TTAATGCCAGAAATGCCCTCTA 57.482 40.909 0.00 0.00 0.00 2.43
3773 3857 3.386932 TTAATGCCAGAAATGCCCTCT 57.613 42.857 0.00 0.00 0.00 3.69
3774 3858 3.739209 GCTTTAATGCCAGAAATGCCCTC 60.739 47.826 1.93 0.00 0.00 4.30
3775 3859 2.169144 GCTTTAATGCCAGAAATGCCCT 59.831 45.455 1.93 0.00 0.00 5.19
3776 3860 2.169144 AGCTTTAATGCCAGAAATGCCC 59.831 45.455 9.56 0.00 0.00 5.36
3777 3861 3.451526 GAGCTTTAATGCCAGAAATGCC 58.548 45.455 9.56 0.00 0.00 4.40
3778 3862 3.111098 CGAGCTTTAATGCCAGAAATGC 58.889 45.455 9.56 0.00 0.00 3.56
3779 3863 3.489738 CCCGAGCTTTAATGCCAGAAATG 60.490 47.826 9.56 0.00 0.00 2.32
3780 3864 2.689983 CCCGAGCTTTAATGCCAGAAAT 59.310 45.455 9.56 0.00 0.00 2.17
3781 3865 2.091541 CCCGAGCTTTAATGCCAGAAA 58.908 47.619 9.56 0.00 0.00 2.52
3782 3866 1.004277 ACCCGAGCTTTAATGCCAGAA 59.996 47.619 9.56 0.00 0.00 3.02
3783 3867 0.618458 ACCCGAGCTTTAATGCCAGA 59.382 50.000 9.56 0.00 0.00 3.86
3784 3868 2.325583 TACCCGAGCTTTAATGCCAG 57.674 50.000 9.56 4.56 0.00 4.85
3785 3869 2.750712 GTTTACCCGAGCTTTAATGCCA 59.249 45.455 9.56 0.00 0.00 4.92
3786 3870 3.014623 AGTTTACCCGAGCTTTAATGCC 58.985 45.455 9.56 1.60 0.00 4.40
3787 3871 3.064958 GGAGTTTACCCGAGCTTTAATGC 59.935 47.826 5.22 5.22 0.00 3.56
3788 3872 4.877323 GGAGTTTACCCGAGCTTTAATG 57.123 45.455 0.00 0.00 0.00 1.90
3817 3901 7.121168 GTGTCATAGATCACCTTGGATCAAAAA 59.879 37.037 6.01 0.00 44.89 1.94
3818 3902 6.599244 GTGTCATAGATCACCTTGGATCAAAA 59.401 38.462 6.01 0.00 44.89 2.44
3819 3903 6.115446 GTGTCATAGATCACCTTGGATCAAA 58.885 40.000 6.01 0.00 44.89 2.69
3820 3904 5.674525 GTGTCATAGATCACCTTGGATCAA 58.325 41.667 6.01 0.00 44.89 2.57
3821 3905 5.282055 GTGTCATAGATCACCTTGGATCA 57.718 43.478 6.01 0.00 44.89 2.92
3830 3914 4.519350 TGTATCCGAGGTGTCATAGATCAC 59.481 45.833 0.00 0.00 0.00 3.06
3831 3915 4.725490 TGTATCCGAGGTGTCATAGATCA 58.275 43.478 0.00 0.00 0.00 2.92
3832 3916 4.762765 ACTGTATCCGAGGTGTCATAGATC 59.237 45.833 0.00 0.00 0.00 2.75
3833 3917 4.730966 ACTGTATCCGAGGTGTCATAGAT 58.269 43.478 0.00 0.00 0.00 1.98
3834 3918 4.135306 GACTGTATCCGAGGTGTCATAGA 58.865 47.826 0.00 0.00 0.00 1.98
3835 3919 4.138290 AGACTGTATCCGAGGTGTCATAG 58.862 47.826 0.00 0.00 0.00 2.23
3836 3920 4.135306 GAGACTGTATCCGAGGTGTCATA 58.865 47.826 0.00 0.00 0.00 2.15
3837 3921 2.952978 GAGACTGTATCCGAGGTGTCAT 59.047 50.000 0.00 0.00 0.00 3.06
3838 3922 2.366533 GAGACTGTATCCGAGGTGTCA 58.633 52.381 0.00 0.00 0.00 3.58
3839 3923 1.331138 CGAGACTGTATCCGAGGTGTC 59.669 57.143 0.00 0.00 0.00 3.67
3840 3924 1.339824 ACGAGACTGTATCCGAGGTGT 60.340 52.381 0.00 0.00 0.00 4.16
3841 3925 1.064208 CACGAGACTGTATCCGAGGTG 59.936 57.143 0.00 0.00 0.00 4.00
3842 3926 1.339824 ACACGAGACTGTATCCGAGGT 60.340 52.381 0.00 0.00 0.00 3.85
3843 3927 1.380524 ACACGAGACTGTATCCGAGG 58.619 55.000 0.00 0.00 0.00 4.63
3844 3928 2.478031 CCAACACGAGACTGTATCCGAG 60.478 54.545 0.00 0.00 0.00 4.63
3845 3929 1.471287 CCAACACGAGACTGTATCCGA 59.529 52.381 0.00 0.00 0.00 4.55
3846 3930 1.471287 TCCAACACGAGACTGTATCCG 59.529 52.381 0.00 0.00 0.00 4.18
3847 3931 2.492484 AGTCCAACACGAGACTGTATCC 59.508 50.000 0.00 0.00 41.74 2.59
3848 3932 3.851976 AGTCCAACACGAGACTGTATC 57.148 47.619 0.00 0.00 41.74 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.